Query psy14238
Match_columns 203
No_of_seqs 183 out of 1305
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01793 cit_synth_euk citrat 100.0 9.7E-48 2.1E-52 356.1 13.2 172 30-201 2-173 (427)
2 KOG2617|consensus 100.0 1.7E-47 3.8E-52 348.5 13.1 190 10-201 5-194 (458)
3 cd06105 ScCit1-2_like Saccharo 100.0 9.9E-47 2.1E-51 349.5 13.0 170 32-201 1-170 (427)
4 PRK09569 type I citrate syntha 100.0 3.2E-45 7E-50 340.2 13.1 171 31-201 2-173 (437)
5 cd06106 ScCit3_like Saccharomy 100.0 4.2E-43 9.2E-48 325.4 12.7 170 32-201 1-170 (428)
6 cd06103 ScCS-like Saccharomyce 100.0 1.5E-41 3.3E-46 314.9 12.3 170 32-201 1-171 (426)
7 PLN02456 citrate synthase 100.0 2.9E-38 6.3E-43 295.0 9.4 162 26-201 28-190 (455)
8 cd06115 AthCS_per_like Arabido 100.0 9E-32 1.9E-36 248.8 11.3 117 46-176 6-126 (410)
9 cd06107 EcCS_AthCS-per_like Es 100.0 9.6E-31 2.1E-35 240.1 11.1 121 60-195 1-122 (382)
10 TIGR01798 cit_synth_I citrate 100.0 1.7E-30 3.7E-35 240.4 11.5 121 42-176 12-133 (412)
11 PRK05614 gltA type II citrate 100.0 2.8E-30 6E-35 239.4 11.2 122 41-176 24-146 (419)
12 cd06116 CaCS_like Chloroflexus 100.0 2.2E-30 4.9E-35 237.8 10.3 110 60-181 1-111 (384)
13 cd06112 citrate_synt_like_1_1 99.9 4.4E-28 9.5E-33 221.8 9.6 106 64-181 1-107 (373)
14 cd06108 Ec2MCS_like Escherichi 99.9 1.3E-27 2.9E-32 218.1 12.0 98 70-176 2-100 (363)
15 cd06117 Ec2MCS_like_1 Subgroup 99.9 2.6E-27 5.7E-32 216.3 11.0 102 70-180 2-104 (366)
16 cd06114 EcCS_like Escherichia 99.9 3.6E-27 7.8E-32 217.6 11.4 118 46-177 11-129 (400)
17 PRK14036 citrate synthase; Pro 99.9 3.8E-27 8.1E-32 216.0 11.2 103 62-176 2-105 (377)
18 PF00285 Citrate_synt: Citrate 99.9 1.7E-27 3.8E-32 216.2 7.3 102 70-180 1-103 (356)
19 PRK12351 methylcitrate synthas 99.9 8E-27 1.7E-31 214.0 11.3 98 70-176 11-109 (378)
20 cd06109 BsCS-I_like Bacillus s 99.9 2.6E-26 5.6E-31 208.6 12.2 100 70-179 2-102 (349)
21 PRK14037 citrate synthase; Pro 99.9 3.2E-26 6.9E-31 209.9 11.4 100 69-177 6-106 (377)
22 PRK14034 citrate synthase; Pro 99.9 3.8E-26 8.1E-31 209.2 10.4 107 62-181 1-108 (372)
23 PRK14032 citrate synthase; Pro 99.9 6.1E-26 1.3E-30 212.0 11.8 113 63-179 28-154 (447)
24 PRK14035 citrate synthase; Pro 99.9 6.3E-26 1.4E-30 207.6 11.0 105 64-181 3-108 (371)
25 PRK12349 citrate synthase 3; P 99.9 8.9E-26 1.9E-30 206.4 11.4 107 62-180 3-110 (369)
26 cd06113 citrate_synt_like_1_2 99.9 1.5E-25 3.3E-30 207.2 10.2 117 73-201 10-138 (406)
27 cd06118 citrate_synt_like_1 Ci 99.9 3.4E-25 7.4E-30 201.5 9.6 103 70-181 2-105 (358)
28 COG0372 GltA Citrate synthase 99.9 1.9E-24 4.2E-29 198.8 10.9 105 60-176 12-117 (390)
29 TIGR01800 cit_synth_II 2-methy 99.9 4.4E-24 9.6E-29 195.1 11.0 102 70-180 2-104 (368)
30 cd06111 DsCS_like Cold-active 99.9 7.1E-24 1.5E-28 193.5 11.1 102 70-180 2-104 (362)
31 cd06110 BSuCS-II_like Bacillus 99.9 8.7E-24 1.9E-28 192.3 10.9 100 70-178 2-102 (356)
32 PRK14033 citrate synthase; Pro 99.9 2.9E-23 6.4E-28 190.3 11.4 105 64-180 9-114 (375)
33 PRK12350 citrate synthase 2; P 99.7 1E-18 2.2E-23 159.3 5.9 89 64-171 1-93 (353)
34 cd06101 citrate_synt Citrate s 99.6 2.9E-15 6.2E-20 131.8 10.9 97 70-175 2-116 (265)
35 PRK06224 citrate synthase; Pro 99.4 5.9E-13 1.3E-17 116.9 9.2 87 77-175 9-99 (263)
36 cd06102 citrate_synt_like_2 Ci 99.0 4.6E-09 1E-13 93.6 10.5 91 73-175 17-142 (282)
37 PLN02522 ATP citrate (pro-S)-l 98.7 1E-07 2.2E-12 92.8 9.9 88 76-175 352-445 (608)
38 cd06100 CCL_ACL-C Citryl-CoA l 98.5 5E-07 1.1E-11 77.7 7.8 73 94-175 1-77 (227)
39 cd06099 CS_ACL-C_CCL Citrate s 94.7 0.17 3.6E-06 43.4 7.8 62 114-175 1-64 (213)
40 PRK14037 citrate synthase; Pro 93.7 0.22 4.9E-06 46.3 7.1 64 112-175 149-214 (377)
41 PRK14034 citrate synthase; Pro 90.4 0.65 1.4E-05 43.2 6.0 61 113-175 150-214 (372)
42 PRK14035 citrate synthase; Pro 90.4 0.99 2.2E-05 42.0 7.1 62 112-175 149-214 (371)
43 cd06112 citrate_synt_like_1_1 90.4 0.72 1.6E-05 42.9 6.2 61 113-175 151-215 (373)
44 PRK12349 citrate synthase 3; P 89.7 1.6 3.5E-05 40.5 7.9 61 113-175 153-217 (369)
45 PRK14036 citrate synthase; Pro 89.6 0.89 1.9E-05 42.3 6.2 61 113-175 152-216 (377)
46 PRK14033 citrate synthase; Pro 86.9 2.7 6E-05 39.1 7.6 61 113-175 157-221 (375)
47 cd06111 DsCS_like Cold-active 86.7 3.1 6.7E-05 38.5 7.8 61 113-175 147-211 (362)
48 cd06113 citrate_synt_like_1_2 86.0 3.4 7.3E-05 38.9 7.7 61 113-175 174-240 (406)
49 KOG2617|consensus 85.4 0.032 6.9E-07 52.6 -5.9 161 35-200 229-410 (458)
50 PRK12351 methylcitrate synthas 85.3 3.7 8E-05 38.4 7.6 60 113-174 157-220 (378)
51 TIGR01800 cit_synth_II 2-methy 85.2 4.8 0.0001 37.3 8.2 63 111-175 145-211 (368)
52 PRK14032 citrate synthase; Pro 84.6 4.6 9.9E-05 38.6 8.0 60 113-174 204-269 (447)
53 cd06108 Ec2MCS_like Escherichi 84.3 3.8 8.3E-05 38.0 7.2 61 113-175 145-209 (363)
54 cd06118 citrate_synt_like_1 Ci 83.2 5 0.00011 36.9 7.4 61 113-175 147-211 (358)
55 PF00285 Citrate_synt: Citrate 82.9 6.5 0.00014 36.1 8.1 61 113-175 147-213 (356)
56 cd06110 BSuCS-II_like Bacillus 82.6 5.3 0.00011 36.8 7.3 61 113-175 147-211 (356)
57 cd06117 Ec2MCS_like_1 Subgroup 82.5 5.8 0.00013 36.8 7.6 61 113-175 148-212 (366)
58 cd06109 BsCS-I_like Bacillus s 81.8 6.2 0.00013 36.4 7.5 61 113-175 136-200 (349)
59 COG0372 GltA Citrate synthase 66.9 24 0.00052 33.3 7.4 62 113-174 162-226 (390)
60 PRK08558 adenine phosphoribosy 63.9 18 0.00039 31.5 5.6 56 95-158 24-80 (238)
61 PTZ00096 40S ribosomal protein 62.9 5.9 0.00013 32.5 2.2 22 91-122 16-37 (143)
62 PF07583 PSCyt2: Protein of un 61.2 8.5 0.00018 33.1 3.0 25 114-138 26-50 (208)
63 PRK12350 citrate synthase 2; P 61.2 34 0.00075 31.7 7.2 61 113-175 132-199 (353)
64 PRK04038 rps19p 30S ribosomal 60.5 7.2 0.00016 31.7 2.3 22 91-122 8-29 (134)
65 PRK13890 conjugal transfer pro 59.5 57 0.0012 25.3 7.2 43 91-141 15-58 (120)
66 cd04448 DEP_PIKfyve DEP (Dishe 57.0 19 0.0004 26.4 3.8 33 114-146 31-63 (81)
67 TIGR01025 rpsS_arch ribosomal 55.2 9.7 0.00021 31.0 2.2 22 91-122 6-27 (135)
68 KOG1741|consensus 50.7 47 0.001 25.8 5.2 36 138-173 30-69 (103)
69 cd06116 CaCS_like Chloroflexus 50.5 46 0.00099 31.2 6.2 61 113-175 154-223 (384)
70 cd06114 EcCS_like Escherichia 48.5 40 0.00086 31.7 5.5 61 113-175 176-245 (400)
71 PF09702 Cas_Csa5: CRISPR-asso 47.0 18 0.0004 28.2 2.5 25 122-146 67-91 (105)
72 TIGR01798 cit_synth_I citrate 42.1 34 0.00073 32.4 4.0 63 113-175 181-250 (412)
73 PF02885 Glycos_trans_3N: Glyc 40.5 68 0.0015 22.0 4.4 44 111-155 13-59 (66)
74 PF03461 TRCF: TRCF domain; I 40.2 45 0.00097 25.1 3.7 31 126-156 28-59 (101)
75 cd04450 DEP_RGS7-like DEP (Dis 39.2 47 0.001 24.3 3.6 32 115-146 32-63 (88)
76 cd06115 AthCS_per_like Arabido 38.5 89 0.0019 29.6 6.2 61 113-175 181-250 (410)
77 TIGR00673 cynS cyanate hydrata 36.5 1.5E+02 0.0033 24.4 6.5 54 93-158 20-74 (150)
78 cd04440 DEP_2_P-Rex DEP (Dishe 36.5 52 0.0011 25.0 3.5 46 91-147 28-73 (93)
79 cd04449 DEP_DEPDC5-like DEP (D 36.1 50 0.0011 24.0 3.3 34 114-147 32-66 (83)
80 KOG4720|consensus 35.3 1.2E+02 0.0026 28.6 6.2 85 59-166 257-350 (391)
81 PRK02866 cyanate hydratase; Va 35.2 1.8E+02 0.0039 23.9 6.7 56 93-160 17-73 (147)
82 PF13443 HTH_26: Cro/C1-type H 34.7 90 0.0019 20.5 4.2 41 93-141 9-51 (63)
83 PRK05614 gltA type II citrate 33.7 1.7E+02 0.0037 27.8 7.3 61 113-175 194-263 (419)
84 PF13946 DUF4214: Domain of un 33.0 1.2E+02 0.0025 21.6 4.8 31 114-144 23-53 (75)
85 cd04438 DEP_dishevelled DEP (D 32.0 87 0.0019 23.0 4.1 33 115-147 33-66 (84)
86 COG3167 PilO Tfp pilus assembl 29.8 98 0.0021 26.9 4.5 61 114-175 84-161 (211)
87 PF08427 DUF1741: Domain of un 29.0 1.5E+02 0.0033 26.1 5.7 54 95-158 84-139 (237)
88 PF00610 DEP: Domain found in 28.9 82 0.0018 21.6 3.3 31 116-146 22-54 (74)
89 cd06107 EcCS_AthCS-per_like Es 27.6 2.5E+02 0.0055 26.3 7.2 61 113-175 161-230 (382)
90 PF10805 DUF2730: Protein of u 27.6 1.2E+02 0.0027 23.0 4.4 62 114-177 18-80 (106)
91 cd04439 DEP_1_P-Rex DEP (Dishe 27.5 1E+02 0.0022 22.5 3.8 46 91-147 19-64 (81)
92 cd04441 DEP_2_DEP6 DEP (Dishev 26.6 1.2E+02 0.0026 22.6 4.0 34 114-147 35-68 (85)
93 PF07587 PSD1: Protein of unkn 26.4 82 0.0018 27.7 3.6 28 114-141 238-265 (266)
94 smart00049 DEP Domain found in 25.6 1.3E+02 0.0029 20.7 4.0 34 114-147 23-56 (77)
95 COG2166 sufE Cysteine desulfur 24.4 1.2E+02 0.0027 24.9 4.0 53 72-138 54-107 (144)
96 PRK09296 cysteine desufuration 24.3 2.2E+02 0.0048 22.9 5.5 75 46-137 26-101 (138)
97 KOG2384|consensus 23.0 67 0.0015 28.1 2.3 52 114-165 24-77 (223)
98 cd04444 DEP_PLEK2 DEP (Disheve 22.4 1.9E+02 0.004 22.7 4.5 35 116-150 36-70 (109)
99 PF01381 HTH_3: Helix-turn-hel 21.6 2.2E+02 0.0048 17.9 4.6 41 93-141 8-49 (55)
100 TIGR03613 RutR pyrimidine util 21.4 2E+02 0.0043 23.0 4.8 13 92-104 26-38 (202)
101 cd04442 DEP_1_DEP6 DEP (Dishev 20.9 1.8E+02 0.0039 21.4 4.0 46 91-147 19-64 (82)
102 cd04443 DEP_GPR155 DEP (Dishev 20.7 1.9E+02 0.0041 21.2 4.0 46 91-147 21-66 (83)
103 PRK00050 16S rRNA m(4)C1402 me 20.5 6E+02 0.013 23.0 8.0 68 92-171 127-204 (296)
104 PF11829 DUF3349: Protein of u 20.2 1E+02 0.0022 23.6 2.6 28 117-144 62-89 (96)
105 PF01756 ACOX: Acyl-CoA oxidas 20.2 63 0.0014 26.5 1.6 78 117-198 96-180 (187)
No 1
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=9.7e-48 Score=356.13 Aligned_cols=172 Identities=65% Similarity=1.116 Sum_probs=167.2
Q ss_pred hhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCC
Q psy14238 30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG 109 (203)
Q Consensus 30 ~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~ 109 (203)
++||++++++||.++++++.|++.||+++||++|+|+.++||||++++.|+||+|||++||+||||+|+||++.+|+.++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~l~~~~g~~~~~~~t~~~~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~~~~~ 81 (427)
T TIGR01793 2 LDLKEQLKEKIPEQQEKVKKLRAEHGKVVLGNITVDMVYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAKG 81 (427)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeeHhhccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhccCCc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999987777778
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCC
Q psy14238 110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189 (203)
Q Consensus 110 ~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~ 189 (203)
+++|.||||+||||+|+|||.+|+++|+++|.+++.+|++|.++|++||+++|||++|+++|++|+.+|.|+++|.+|++
T Consensus 82 ~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~ 161 (427)
T TIGR01793 82 GEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIH 161 (427)
T ss_pred cccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCC
Q psy14238 190 KSKYWEYIQQPL 201 (203)
Q Consensus 190 k~~yW~~~~eD~ 201 (203)
|.+||++.+||+
T Consensus 162 ~~~~~~~~~e~~ 173 (427)
T TIGR01793 162 KTKYWEYTYEDS 173 (427)
T ss_pred ccccHHHHHHHH
Confidence 999999999885
No 2
>KOG2617|consensus
Probab=100.00 E-value=1.7e-47 Score=348.48 Aligned_cols=190 Identities=48% Similarity=0.778 Sum_probs=178.0
Q ss_pred hhhhhhhhhhhhhccccccchhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCC
Q psy14238 10 SVADLHQISNFLRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEG 89 (203)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~G 89 (203)
++...+++.....|.+++...+||++|++.||.++++++.++++|| ++|.||+|+++|||||.+.++|+.|++|+++|
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~LK~~l~~~ip~~~~~~k~~~~ehG--~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~g 82 (458)
T KOG2617|consen 5 HLSVSQVLPAIENWCASISAATLKGNLAIVIPRTGDEYKKFVSEHG--TVGNVTLKKIYGGMRGKGLLLWETSVLDPEEG 82 (458)
T ss_pred hhccccccccccccccccccccHHHHHHhhChhhHHHhhhhHhhcC--cccceeHHHhhcccCCCCceeecCcccchhhC
Confidence 3444455555555556666677999999999999999999999999 56999999999999999999999999999999
Q ss_pred eeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHH
Q psy14238 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSA 169 (203)
Q Consensus 90 I~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~ 169 (203)
|+|||++|+||+..+|+.+++.|++||+++|||+||++||++|+++|+.+|..|+.||++|.++|+++|+++|||+++++
T Consensus 83 I~frg~~i~e~q~~lp~~~~~~e~lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~ 162 (458)
T KOG2617|consen 83 IRFRGGDIPECQKRLPPAEEGAEPLPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAA 162 (458)
T ss_pred eeecCCCHHHHHhhCCCCccCCcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhCCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHhHHHhhccCCcccCcccccCCC
Q psy14238 170 AITALNSESKFAKAYNDGVHKSKYWEYIQQPL 201 (203)
Q Consensus 170 ~vsaL~~~s~f~~~y~~g~~k~~yW~~~~eD~ 201 (203)
+++||+..|+|+++|.+|+.|.+||+|+|||.
T Consensus 163 a~~al~~~s~fa~ay~~G~~k~~yw~~~~ed~ 194 (458)
T KOG2617|consen 163 AVLALKIFSPFAKAYLRGIGKYKYWQYTYEDC 194 (458)
T ss_pred HHHhccccccchhhhhhccchhhcccccHHHH
Confidence 99999999999999999999999999999984
No 3
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=9.9e-47 Score=349.49 Aligned_cols=170 Identities=78% Similarity=1.246 Sum_probs=165.7
Q ss_pred HHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCC
Q psy14238 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (203)
Q Consensus 32 lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~ 111 (203)
||+++++++|.+++++++|+++|++++||.+|+||+++||+||+++.|+||+|||++|++||||+|+||++++||+++++
T Consensus 1 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (427)
T cd06105 1 LKDRLAELIPKEQARIKKFRKEHGKTVVGEVTVDMVYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLLPKAPGGE 80 (427)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCcceeeeecCcccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhCccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCCcc
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKS 191 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~k~ 191 (203)
++.||||+||||+|+|||.+|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|++.+.|+.+|.+|.+|.
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~ 160 (427)
T cd06105 81 EPLPEGLFWLLLTGEVPTKEQVSALSKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKS 160 (427)
T ss_pred ccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCC
Q psy14238 192 KYWEYIQQPL 201 (203)
Q Consensus 192 ~yW~~~~eD~ 201 (203)
+||++.++|+
T Consensus 161 ~~~~~~~~~~ 170 (427)
T cd06105 161 KYWEYVYEDS 170 (427)
T ss_pred ccHHHHHHHH
Confidence 9999998875
No 4
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=3.2e-45 Score=340.21 Aligned_cols=171 Identities=42% Similarity=0.752 Sum_probs=165.7
Q ss_pred hHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCC
Q psy14238 31 DLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGG 110 (203)
Q Consensus 31 ~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~ 110 (203)
+||++++++||.+++++.+|+|.|++++||++|+|+..+||+|+.++.|+||+|||++|++||||+|+||++++|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~GL~gv~~~~t~IS~iDg~~Gl~YRGy~I~dL~~~~p~~~~~ 81 (437)
T PRK09569 2 QLKETLKQKIEEHRPRTTRLVKEFGSVVIDEVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPETFEALPKAPGS 81 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCeeeeeeeHhhhcccccCCeecceeceeecCCCceeECCccHHHHHhhCcccccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhcc-CC
Q psy14238 111 EEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VH 189 (203)
Q Consensus 111 ~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g-~~ 189 (203)
++++||||+||||+|+|||.+|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++|+|+..|.++ ..
T Consensus 82 ~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~ 161 (437)
T PRK09569 82 EYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN 161 (437)
T ss_pred CCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred cccCcccccCCC
Q psy14238 190 KSKYWEYIQQPL 201 (203)
Q Consensus 190 k~~yW~~~~eD~ 201 (203)
+.++|++.++|+
T Consensus 162 ~~~~~~~~~~~~ 173 (437)
T PRK09569 162 KMDAWEYMYEDA 173 (437)
T ss_pred ccccHHHHHHHH
Confidence 889999988764
No 5
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=4.2e-43 Score=325.38 Aligned_cols=170 Identities=49% Similarity=0.864 Sum_probs=161.5
Q ss_pred HHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCC
Q psy14238 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (203)
Q Consensus 32 lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~ 111 (203)
||+++++++|.++++++.|++.||+++||++|++++++||+|+.++.|+||+|||++|++||||+|+||++++||..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~t~~~~~~GL~gv~~~~t~is~idg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (428)
T cd06106 1 LKEALKEVIPAKREQLKKLKAEYGETVVGDVKVSNVLGGMRGLKSMLWEGSVLDAEEGIRFHGKTIPECQKELPKAPIGG 80 (428)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCeeeeeeHHHhcccccCCeeeeecCeEECCCCCeeECCCcHHHHHhhCccccccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998865555
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCCcc
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKS 191 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~k~ 191 (203)
.+.||||+||||+|+|||.+|+++|+++|.+++.||+.+.++|++||+++|||++|+++|++|+.++.|+.+|+.+..+.
T Consensus 81 ~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~ 160 (428)
T cd06106 81 EMLPESMLWLLLTGKVPTFEQARGLSKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKT 160 (428)
T ss_pred CccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccc
Confidence 55559999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cCcccccCCC
Q psy14238 192 KYWEYIQQPL 201 (203)
Q Consensus 192 ~yW~~~~eD~ 201 (203)
+||++.++++
T Consensus 161 ~~~~~~~~~~ 170 (428)
T cd06106 161 EYWEPTLEDS 170 (428)
T ss_pred cchHHHHHHH
Confidence 9999887654
No 6
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=1.5e-41 Score=314.85 Aligned_cols=170 Identities=66% Similarity=1.156 Sum_probs=162.9
Q ss_pred HHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCC
Q psy14238 32 LKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGE 111 (203)
Q Consensus 32 lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~ 111 (203)
|||+++++||.+++++..|++.||+++++++|+++..+|++|+.++.|+||+|||++|++||||+|+||++++|++++++
T Consensus 1 l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~gv~~~~t~Is~iDg~~Gl~YRGy~I~dLa~~~~~~~~~~ 80 (426)
T cd06103 1 LKDKLAELIPKKQARIKELRKKYGNTKLGQITVDQVIGGMRGMKGLVYETSVLDPDEGIRFRGKTIPECQELLPKADGGG 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCccccccchhhhccCcCCCeeeeeeCeeEcCCCCeEECCccHHHHHhhCccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhcc-CCc
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHK 190 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g-~~k 190 (203)
+++||||+||||+|+|||++|+++|+++|..++.+|+.|.++|++||+++|||++|+++|++|+..+.|+..|.++ +++
T Consensus 81 ~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~ 160 (426)
T cd06103 81 EPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINK 160 (426)
T ss_pred cCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccc
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999999887 889
Q ss_pred ccCcccccCCC
Q psy14238 191 SKYWEYIQQPL 201 (203)
Q Consensus 191 ~~yW~~~~eD~ 201 (203)
.++|++.++|+
T Consensus 161 ~~~~~~~~~~a 171 (426)
T cd06103 161 TTYWEYVYEDA 171 (426)
T ss_pred cccHHHHHHHH
Confidence 99999887764
No 7
>PLN02456 citrate synthase
Probab=100.00 E-value=2.9e-38 Score=295.03 Aligned_cols=162 Identities=31% Similarity=0.523 Sum_probs=149.8
Q ss_pred cccchhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhC
Q psy14238 26 TDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVL 104 (203)
Q Consensus 26 ~~~~~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~ 104 (203)
+.+.++++..+.+..+.++.++++|++ +++.+|.+|||||+.|+..| .|+||+|||++|+ +||||+|+||++++
T Consensus 28 ~r~g~~~~~~i~~~~~~~~~~~~~l~~--~~~~~g~~~~d~Gl~~~~~~---~s~IS~iDg~~G~L~YRGy~I~dLa~~~ 102 (455)
T PLN02456 28 NRTGKDYESPLSELGPVQAERLKKIKA--GKDDLGLKTVDPGYRNTAPV---LSEISLIDGDEGILRFRGYPIEELAEKS 102 (455)
T ss_pred CCCCcEEEEehhccCCcccchhhhccc--CcCccCCEecCcccCCceee---eeeceEEeCCCCEEEECCccHHHHHhcC
Confidence 345678899999888988888888888 66777999999988877665 6799999999999 99999999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHh
Q psy14238 105 PKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAY 184 (203)
Q Consensus 105 pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y 184 (203)
+||||+||||+|+|||++|+++|+++|..++.+|+.+.++|++||+++|||++|+++|++|++.+.|+..|
T Consensus 103 ---------~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~ 173 (455)
T PLN02456 103 ---------PFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAY 173 (455)
T ss_pred ---------CHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCcccCcccccCCC
Q psy14238 185 NDGVHKSKYWEYIQQPL 201 (203)
Q Consensus 185 ~~g~~k~~yW~~~~eD~ 201 (203)
.+|.++.++|++.++++
T Consensus 174 ~~g~~~~~~~~~~~~~a 190 (455)
T PLN02456 174 LRGQHKYKSWEVRDEDI 190 (455)
T ss_pred hcccCcccCHHHHHHHH
Confidence 99999999999987764
No 8
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=99.97 E-value=9e-32 Score=248.76 Aligned_cols=117 Identities=26% Similarity=0.460 Sum_probs=110.2
Q ss_pred HHHHHHHhhC---CcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHH
Q psy14238 46 RVKNFRKNYG---STKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWL 121 (203)
Q Consensus 46 ~~~di~~~~~---~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yL 121 (203)
.++||++++. ++ |.+++|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+||
T Consensus 6 ~~~d~~~~~~~~~~~--g~~~~~~Gl~~~~~~---~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feEv~~L 71 (410)
T cd06115 6 KATDFKKIKAGKDDK--GLRLYDPGYLNTAVV---RSKISYIDGDKGILRYRGYPIEELAEKS---------TFLEVAYL 71 (410)
T ss_pred ceeeHHHhcCCcccC--CCcccCCccCCceEE---EeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHH
Confidence 5678999988 77 999999999976665 6699999999999 99999999999987 89999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 122 LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 122 Ll~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
||+|+|||++|+++|+++|.+++.+|+.+.++|++||+++|||++|+++|++|+.
T Consensus 72 Ll~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~ 126 (410)
T cd06115 72 LIYGNLPTKSQLSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSA 126 (410)
T ss_pred HHcCCCcCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999985
No 9
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=99.97 E-value=9.6e-31 Score=240.06 Aligned_cols=121 Identities=23% Similarity=0.371 Sum_probs=106.0
Q ss_pred ceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 60 g~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
|.+++|||+.|+..| .|.||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|++
T Consensus 1 g~~~~~~GL~~v~~~---~t~Is~iDg~~G~L~YRGy~I~dLa~~~---------~feev~yLLl~G~LPt~~el~~f~~ 68 (382)
T cd06107 1 GLRVYDPGYLNTAVC---ESSITYIDGDKGILLYRGYPIEQLAESS---------TYEEVAYLLLWGELPTQEQYDEFQR 68 (382)
T ss_pred CCCCCCCCcCCeeeE---eeeCeeEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 566799988866555 7799999999999 99999999999997 8999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCCcccCcc
Q psy14238 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWE 195 (203)
Q Consensus 139 ~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~k~~yW~ 195 (203)
+|.+++.+|+.|.++|++||+++|||++|+++|++|+..+.-..-..+| +.||.
T Consensus 69 ~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~---~~~~~ 122 (382)
T cd06107 69 RLSEHMMVPESVHRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG---DLYQN 122 (382)
T ss_pred HHHHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc---ccccc
Confidence 9999999999999999999999999999999999999744322111344 67884
No 10
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=99.97 E-value=1.7e-30 Score=240.38 Aligned_cols=121 Identities=22% Similarity=0.372 Sum_probs=110.1
Q ss_pred ccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHH
Q psy14238 42 SEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFW 120 (203)
Q Consensus 42 ~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~y 120 (203)
+.+++++++++...++ |.+++|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+|
T Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~GL~~v~~~---~s~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~y 77 (412)
T TIGR01798 12 TLGPDVIDIRKLYKQT--GLFTFDPGFTSTASC---ESKITFIDGDKGILLYRGYPIDQLATKS---------DYLEVCY 77 (412)
T ss_pred cCCCcchhhHhhhhcC--CCCcCCCCCCCceeE---eeeCeeEeCCCCEEEECCccHHHHhccC---------CHHHHHH
Confidence 3445677888887766 677899999866665 6699999999999 99999999999987 8999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 121 LLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 121 LLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
|||+|+|||++|+++|+++|.+++.+|+.|.++|++||+++|||++|+++|++|+.
T Consensus 78 LLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~ 133 (412)
T TIGR01798 78 LLLNGELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSA 133 (412)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999974
No 11
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=99.96 E-value=2.8e-30 Score=239.44 Aligned_cols=122 Identities=22% Similarity=0.361 Sum_probs=113.1
Q ss_pred cccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHH
Q psy14238 41 PSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLF 119 (203)
Q Consensus 41 p~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~ 119 (203)
++.+++++|+++++.++ |.+++||||.|+..| .|+||+|||++|+ +||||+|+||+++. +||||+
T Consensus 24 ~t~~~~~~~~~~~~~~~--~~~~~~~Gl~~~~~~---~S~Is~iDg~~G~L~YRGy~i~dLa~~~---------~feEva 89 (419)
T PRK05614 24 GTLGPDVIDIRKLYGST--GYFTYDPGFTSTASC---ESKITYIDGDKGILLYRGYPIEQLAEKS---------DFLEVC 89 (419)
T ss_pred CCCCCcceehHhhhhcc--CCcccCCccCCceee---eeeceeEeCCCCEEEECCccHHHHHhcC---------CHHHHH
Confidence 34566788999998877 788999999977776 5699999999999 99999999999997 999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 120 yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
||||+|+||+.+|++.|+.+|..++.+|+.+.++|++||+++|||++|+++|++|+.
T Consensus 90 ~LLl~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~ 146 (419)
T PRK05614 90 YLLLYGELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSA 146 (419)
T ss_pred HHHHcCcCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999874
No 12
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=99.96 E-value=2.2e-30 Score=237.76 Aligned_cols=110 Identities=21% Similarity=0.332 Sum_probs=101.8
Q ss_pred ceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 60 g~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
|.+++|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||.+|+++|++
T Consensus 1 g~~~~~~Gl~~v~~~---~t~Is~iDg~~G~L~YRGy~I~dL~~~~---------~feEv~yLLl~G~lPt~~el~~f~~ 68 (384)
T cd06116 1 GLMTYDPAYLNTASC---KSAITYIDGEKGILRYRGYPIEQLAEQS---------SYLEVAYLLLHGELPTKERLAQWVY 68 (384)
T ss_pred CCCCCCCCcCCeeEE---eeEeeeEeCCCCeEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 566799998866665 6699999999999 99999999999997 8999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhH
Q psy14238 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFA 181 (203)
Q Consensus 139 ~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~ 181 (203)
+|..++.+|+.+.++|++||+++|||++|+++|++|+..+.++
T Consensus 69 ~L~~~~~lp~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~ 111 (384)
T cd06116 69 DITRHTMTHENLKKFMDGFRYDAHPMGILISSVAALSTFYPEA 111 (384)
T ss_pred HHHHccCCCHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCccc
Confidence 9999999999999999999999999999999999999766443
No 13
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=99.95 E-value=4.4e-28 Score=221.84 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=98.1
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS 142 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~ 142 (203)
+|||+. |+.++.|+||+|||++|+ +||||+|+||+++. +||||+||||+|++||.+|++.|+.+|..
T Consensus 1 ~~~Gl~---gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~~~~~L~~ 68 (373)
T cd06112 1 YIPGLA---GVPAAESSISYIDGKNGILEYRGYDIEELAEYS---------SFEEVALLLLDGDLPTAAELEEFDKELRQ 68 (373)
T ss_pred CCCccC---CCeeeeeeceEEeCCCCEEEECCccHHHHhcCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 466555 666668899999999998 99999999999986 99999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhH
Q psy14238 143 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFA 181 (203)
Q Consensus 143 ~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~ 181 (203)
++.+|+.+.++|++||+++|||++|+++|++|+..+.+.
T Consensus 69 ~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~ 107 (373)
T cd06112 69 HRRVKYNIRDMMKCFPETGHPMDMLQATVAALGMFYPKP 107 (373)
T ss_pred hcCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhccCccc
Confidence 999999999999999999999999999999999877664
No 14
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=99.95 E-value=1.3e-27 Score=218.10 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=93.5
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.+..|+||+|||++|+ +||||+|+||+++. +||||+||||+|+|||.+|+++|+.+|..++.+|+
T Consensus 2 GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~---------sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp~ 72 (363)
T cd06108 2 GLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENA---------TFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLPA 72 (363)
T ss_pred CCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCH
Confidence 677888889999999999987 99999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
++.++|++||+++|||++|+++|++|+.
T Consensus 73 ~v~~~i~~~p~~~hpm~~L~~~vs~l~~ 100 (363)
T cd06108 73 ALKTVLELIPKDSHPMDVMRTGCSMLGC 100 (363)
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHhhhh
Confidence 9999999999999999999999999874
No 15
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=99.94 E-value=2.6e-27 Score=216.32 Aligned_cols=102 Identities=22% Similarity=0.328 Sum_probs=96.9
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|+.|+.+..|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||.+|+++|+++|..++.+|+
T Consensus 2 GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~---------~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~ 72 (366)
T cd06117 2 ALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKC---------EFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPA 72 (366)
T ss_pred CCCCeeEecccCeeeecccCEEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 778888889999999999998 99999999999997 89999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
.+.++|++||+++|||++|+++|++|+..+.+
T Consensus 73 ~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~ 104 (366)
T cd06117 73 NVKTALEQLPAAAHPMDVMRTGVSVLGCVLPE 104 (366)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHhhhcccCcc
Confidence 99999999999999999999999999976543
No 16
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=99.94 E-value=3.6e-27 Score=217.59 Aligned_cols=118 Identities=25% Similarity=0.386 Sum_probs=103.2
Q ss_pred HHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHh
Q psy14238 46 RVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVT 124 (203)
Q Consensus 46 ~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~ 124 (203)
+..++.+...++ |..++|||+. |+.++.|+||+|||++|+ +||||+|+||+++. +||||+||||+
T Consensus 11 ~~~~~~~~~~~~--~~~~~~~GL~---gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~---------sfEEva~LL~~ 76 (400)
T cd06114 11 KVIDISSLRKKT--GVFTYDPGFM---NTASCESAITYIDGEKGILRYRGYPIEQLAEKS---------SFLEVCYLLLY 76 (400)
T ss_pred cceehHhhhhhc--CCccCCCCCC---CceeEeeeCeEEeCCCCEEEECCccHHHHHhcC---------CHHHHHHHHHc
Confidence 334455553333 4556888777 555567899999999999 99999999999987 89999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCC
Q psy14238 125 GDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177 (203)
Q Consensus 125 GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~ 177 (203)
|+||+.+|+++|+.+|..++.+|+.+.++|+++|+++|||++|+++|++|+..
T Consensus 77 G~lP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~ 129 (400)
T cd06114 77 GELPTAEQLQEFREEITRHTLVHEQMKRFFNGFPRDAHPMAILSAMVNALSAF 129 (400)
T ss_pred CcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcccCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999853
No 17
>PRK14036 citrate synthase; Provisional
Probab=99.94 E-value=3.8e-27 Score=216.04 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=96.1
Q ss_pred EEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L 140 (203)
++||||+. |+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|++||.+|++.|..+|
T Consensus 2 ~~~~~Gl~---gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~el~~f~~~L 69 (377)
T PRK14036 2 CEYRPGLE---GVPATQSSISYVDGQKGILEYRGYPIEELAEKS---------SFLETAYLLIWGELPTAEELEEFEQEV 69 (377)
T ss_pred CCCCCccC---CCeeeeeeceEEECCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45888766 555557899999999999 99999999999997 999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 141 ~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
..++.+|+.+.++|++||+++|||++|+++|++|+.
T Consensus 70 ~~~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~ 105 (377)
T PRK14036 70 RMHRRVKYRIRDMMKCFPETGHPMDALQASAAALGL 105 (377)
T ss_pred HHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999975
No 18
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=99.94 E-value=1.7e-27 Score=216.15 Aligned_cols=102 Identities=29% Similarity=0.525 Sum_probs=92.4
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.++.|+||+|||++|+ +||||+|+||+++. +||||+||||+|++||++|+++|+.+|.+++.+|+
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~---------sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe 71 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENA---------SFEEVAYLLWYGELPTAEELEEFSAELKERRALPE 71 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS---------BHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--H
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcC---------CHHHHHHHHHhccCCChhhhccchhHHHhhcchhH
Confidence 678998999999999999995 99999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
.+.+++.+||+++|||++|+++|++|+..+.+
T Consensus 72 ~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~ 103 (356)
T PF00285_consen 72 EVIEVIEALPRDAHPMDVLRAAVSALSAFDPD 103 (356)
T ss_dssp HHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc
Confidence 99999999999999999999999999876665
No 19
>PRK12351 methylcitrate synthase; Provisional
Probab=99.94 E-value=8e-27 Score=213.98 Aligned_cols=98 Identities=22% Similarity=0.363 Sum_probs=92.9
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.+..|.||+||++.|+ +||||+|+||++++ +||||+||||+|+|||.+|+++|+.+|..++.+|+
T Consensus 11 GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~---------~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp~ 81 (378)
T PRK12351 11 ALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLPA 81 (378)
T ss_pred CCCCeeeccccCeeEecCCCEEEECCccHHHHHhcC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCCH
Confidence 555777778899999999887 99999999999987 89999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
.+.++|++||+++|||++|+++|++|++
T Consensus 82 ~v~~~i~~~p~~~hPM~~L~~~vs~l~~ 109 (378)
T PRK12351 82 AVKTVLEAIPAAAHPMDVMRTGVSVLGC 109 (378)
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHhhcc
Confidence 9999999999999999999999999986
No 20
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=99.94 E-value=2.6e-26 Score=208.63 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=93.6
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+.+|..++.+|+
T Consensus 2 Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~---------~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp~ 72 (349)
T cd06109 2 GLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSA---------SFEDVAALLWNGFFPDLPELEEFRAALAAARALPD 72 (349)
T ss_pred CcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCH
Confidence 566777778999999999996 99999999999997 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcH
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESK 179 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~ 179 (203)
.+.++|++| +++|||++|+++|++++.+..
T Consensus 73 ~v~~~~~~~-~~~~pm~~l~~~~s~~~~~~~ 102 (349)
T cd06109 73 VVAALLPAL-AGLDPMDALRALLALLPDSPD 102 (349)
T ss_pred HHHHHHHhC-CCcCHHHHHHHHHHhcCchhH
Confidence 999999999 899999999999999986543
No 21
>PRK14037 citrate synthase; Provisional
Probab=99.93 E-value=3.2e-26 Score=209.93 Aligned_cols=100 Identities=24% Similarity=0.421 Sum_probs=94.0
Q ss_pred cccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 69 GGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 69 ~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.|++|+.+..|+||+|||++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..++.+|
T Consensus 6 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~---------~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~lp 76 (377)
T PRK14037 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGELPTKKELNDLKEKLNEEYEVP 76 (377)
T ss_pred CCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3455777778899999999998 99999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhCCC
Q psy14238 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSE 177 (203)
Q Consensus 148 e~v~~~i~~~P~~aHPM~~L~~~vsaL~~~ 177 (203)
+.+.++|++||+++|||++|+++|++|+..
T Consensus 77 ~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~ 106 (377)
T PRK14037 77 QEVIDSIYLMPRDSDAIGLMEAAFAALASI 106 (377)
T ss_pred HHHHHHHHhCCccCCcHHHHHHHHHhhhcc
Confidence 999999999999999999999999999864
No 22
>PRK14034 citrate synthase; Provisional
Probab=99.93 E-value=3.8e-26 Score=209.16 Aligned_cols=107 Identities=20% Similarity=0.337 Sum_probs=95.5
Q ss_pred EEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
+|+++|+. |+.+..|.||+||++ +++||||+|+||+++. +||||+||||+|+|||++|+++|+++|.
T Consensus 1 ~~~~~GL~---gv~~~~s~is~i~~~-~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~L~ 67 (372)
T PRK14034 1 MTVTRGLE---GVVATTSSVSSIIDD-TLTYVGYNIDDLAENA---------SFEEVVYLLWHRKLPNKQELAEFKEQLS 67 (372)
T ss_pred CCCCCCCC---CceEeeeEeeccCCC-eEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 36777666 555557799999964 6899999999999986 9999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHhcCCC-CCCHHHHHHHHHHHhCCCcHhH
Q psy14238 142 SRAELPSHVVTMLNNFPN-HLHPMSQFSAAITALNSESKFA 181 (203)
Q Consensus 142 ~~~~lpe~v~~~i~~~P~-~aHPM~~L~~~vsaL~~~s~f~ 181 (203)
.++.+|+.+.+++++||+ ++|||++|+++|++|+..+.+.
T Consensus 68 ~~~~lp~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~ 108 (372)
T PRK14034 68 ENAKVPGEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEA 108 (372)
T ss_pred HhcCCCHHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCccc
Confidence 999999999999999997 5999999999999998766443
No 23
>PRK14032 citrate synthase; Provisional
Probab=99.93 E-value=6.1e-26 Score=211.99 Aligned_cols=113 Identities=20% Similarity=0.251 Sum_probs=97.1
Q ss_pred EecccCcccc--cccceeeeeceecCC----------CCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCC
Q psy14238 63 TVDMMYGGMR--GIKGLVCETSVLDPE----------EGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPS 129 (203)
Q Consensus 63 T~d~g~~g~r--g~~~~~t~iS~IDg~----------~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt 129 (203)
++++|+.+-- |+.+..|+||+|||+ +|+ +||||+|+||++++||++ +++||||+||||+|+|||
T Consensus 28 ~~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~dLa~~~~~~~---~~~FeEv~~LLl~G~LPt 104 (447)
T PRK14032 28 DVKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIKDLVNGFLKEK---RFGFEEVAYLLLFGELPT 104 (447)
T ss_pred CCCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHHHHHhhccccc---CCCHHHHHHHHHcCCCCC
Confidence 3455554111 666668889888884 485 999999999999999874 469999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHH-HHHHHhcCCCCCCHHHHHHHHHHHhCCCcH
Q psy14238 130 EAQVQALSKSWASRAELPSH-VVTMLNNFPNHLHPMSQFSAAITALNSESK 179 (203)
Q Consensus 130 ~~el~~f~~~L~~~~~lpe~-v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~ 179 (203)
.+|++.|+++|.+++.+|+. +.++|+++| ++|||++|+++|++|+..+.
T Consensus 105 ~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~ 154 (447)
T PRK14032 105 KEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDD 154 (447)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCC
Confidence 99999999999999999999 899999999 79999999999999997443
No 24
>PRK14035 citrate synthase; Provisional
Probab=99.93 E-value=6.3e-26 Score=207.61 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=94.1
Q ss_pred ecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhh
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASR 143 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~ 143 (203)
+++|+.|+.. +.|+||+|||+ +++||||+|+||+++. +||||+||||+|+|||++|+++|+.+|..+
T Consensus 3 ~~~Gl~~v~~---~~s~Is~id~~-~L~YRGy~i~dLa~~~---------~Feeva~LLl~G~lP~~~el~~f~~~L~~~ 69 (371)
T PRK14035 3 LQRGLEGVIA---AETKISSIIDS-QLTYAGYDIDDLAENA---------SFEEVIFLLWNYRLPTEEELAHLKGKLRKY 69 (371)
T ss_pred CCCCCCCceE---eeeeeeEecCC-EeEECCccHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHHHHHHHc
Confidence 4677775554 47799999986 6899999999999986 999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCC-CCCCHHHHHHHHHHHhCCCcHhH
Q psy14238 144 AELPSHVVTMLNNFP-NHLHPMSQFSAAITALNSESKFA 181 (203)
Q Consensus 144 ~~lpe~v~~~i~~~P-~~aHPM~~L~~~vsaL~~~s~f~ 181 (203)
+.+|+.+.++|..+| +++|||++|+++|++|+..+.+.
T Consensus 70 ~~lp~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~ 108 (371)
T PRK14035 70 MTLNDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA 108 (371)
T ss_pred CCCCHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc
Confidence 999999999999976 69999999999999999766543
No 25
>PRK12349 citrate synthase 3; Provisional
Probab=99.93 E-value=8.9e-26 Score=206.40 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=98.4
Q ss_pred EEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L 140 (203)
-++|||+.|+. ++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|++.|+.+|
T Consensus 3 ~~~~~Gl~g~~---~~~S~IS~id~~~g~L~YRGydi~dLa~~~---------sFeeva~LL~~G~LP~~~e~~~f~~~L 70 (369)
T PRK12349 3 EKFSPGLDGVI---AAETKISFLDTVKGEIVIQGYDLIELSKTK---------EYLDIVHLLLEEHLPNEDEKATLEKKL 70 (369)
T ss_pred CcCCCccCCCe---eeeeeceeEeCCCCEEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 36888877555 557899999999886 99999999999987 999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 141 ~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
..++.+|+.+.++++.+|+++|||++|+++|++++..+.+
T Consensus 71 ~~~~~~p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~ 110 (369)
T PRK12349 71 KEEYAVPEGVFNILKALPKETHPMDGLRTGVSALAGYDND 110 (369)
T ss_pred HhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCcc
Confidence 9999999999999999999999999999999999976654
No 26
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=99.92 E-value=1.5e-25 Score=207.17 Aligned_cols=117 Identities=19% Similarity=0.236 Sum_probs=100.1
Q ss_pred cccceeeeecee------cCC----CCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 73 GIKGLVCETSVL------DPE----EGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 73 g~~~~~t~iS~I------Dg~----~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
|+.+..|+||+| ||+ +|+ +||||+|+||++++||+ ++++||||+||||+|+|||.+|+++|+++|.
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~---~~~sFEev~yLLl~G~LPt~~el~~f~~~L~ 86 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKE---NRFGFEETAYLLLFGYLPNKEELEEFCEILS 86 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccc---cCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344557788888 899 998 99999999999999886 4579999999999999999999999999999
Q ss_pred hhcCCCHHH-HHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCCcccCcccccCCC
Q psy14238 142 SRAELPSHV-VTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPL 201 (203)
Q Consensus 142 ~~~~lpe~v-~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~k~~yW~~~~eD~ 201 (203)
+++.+|+.+ .++++++| +.|||++|+++|++|+..+.. .+.++|++.++|+
T Consensus 87 ~~~~lp~~~~~~~i~~~p-~~hpM~~L~a~v~~l~~~~~~--------~~~~~~~~~~~~a 138 (406)
T cd06113 87 SYRTLPDNFVEDVILKAP-SKDIMNKLQRSVLALYSYDDK--------PDDISLENVLRQS 138 (406)
T ss_pred HhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhccccCCC--------cccCCHHHHHHHH
Confidence 999999975 77999999 599999999999999986432 2345677776653
No 27
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=99.92 E-value=3.4e-25 Score=201.51 Aligned_cols=103 Identities=36% Similarity=0.609 Sum_probs=97.0
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.++.|+||+||+++|. +||||+|+||+++. +||||+||||+|+||+.+|++.|..+|..++.+|+
T Consensus 2 Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p~ 72 (358)
T cd06118 2 GLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKS---------SFEEVAYLLLYGKLPTKEELAEFKKKLASHRALPE 72 (358)
T ss_pred CCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCH
Confidence 667888889999999999876 99999999999987 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhH
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFA 181 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~ 181 (203)
.+.++++.+|+++|||++|+++|++++..+.+.
T Consensus 73 ~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~ 105 (358)
T cd06118 73 HVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA 105 (358)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc
Confidence 999999999999999999999999999877554
No 28
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=99.91 E-value=1.9e-24 Score=198.82 Aligned_cols=105 Identities=30% Similarity=0.537 Sum_probs=96.9
Q ss_pred ceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 60 g~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
+..+|++|+.|... ..|+||+|||+.|+ +||||+|+||+++. +||||+||||+|+|||.+|++.|.+
T Consensus 12 ~~~~~~~Gl~~v~~---~~t~is~id~~~g~L~yrGy~i~dla~~~---------~feev~~LLl~G~lPt~~el~~~~~ 79 (390)
T COG0372 12 GRFTYDPGLEGVAA---CETAISYIDGDGGILRYRGYDIEDLAEKS---------SFEEVAYLLLYGELPTKAELAAFFA 79 (390)
T ss_pred cccccCCcccccce---eeeeeeEecCCCceEEECCccHHHHHhhc---------CHHHHHHHHHcCcCCChHHHHHHHH
Confidence 67788888875554 47799999999997 99999999999996 9999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 139 ~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
++..++.+|+++.+++..+|+++|||++|+++|++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~ 117 (390)
T COG0372 80 KLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSA 117 (390)
T ss_pred HHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999977764
No 29
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=99.91 E-value=4.4e-24 Score=195.08 Aligned_cols=102 Identities=25% Similarity=0.470 Sum_probs=97.0
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.++.|+||+||+++|+ +||||+|+||+++. +||||+||||+|++|+++|++.|...|..++.+|+
T Consensus 2 Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p~ 72 (368)
T TIGR01800 2 GLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHA---------SFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLPD 72 (368)
T ss_pred CCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCH
Confidence 788888889999999999996 99999999999987 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
++.++++.||+++|||++|+++|++++..+.+
T Consensus 73 ~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~ 104 (368)
T TIGR01800 73 EVIELIEALPAESHPMDALRTAVSYLGALDPE 104 (368)
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999876654
No 30
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=99.90 E-value=7.1e-24 Score=193.51 Aligned_cols=102 Identities=24% Similarity=0.428 Sum_probs=96.5
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.+..|+||+||+++|. +||||+|+||++++ +||||+||||+|++|+.+|++.|...|..++.+|+
T Consensus 2 Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp~ 72 (362)
T cd06111 2 GLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENC---------SFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLDR 72 (362)
T ss_pred CCCCceEecccceEEECCCCeEEECCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCCH
Confidence 778888889999999999875 99999999999987 89999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
.+.++++.||+++|||++|+++|++++..+.+
T Consensus 73 ~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~ 104 (362)
T cd06111 73 NLLSLIASLPKNCHPMDVLRTAVSVLGAEDSE 104 (362)
T ss_pred HHHHHHHhCCCCCChHHHHHHHHHHhhccCcc
Confidence 99999999999999999999999999976654
No 31
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=99.90 E-value=8.7e-24 Score=192.27 Aligned_cols=100 Identities=27% Similarity=0.514 Sum_probs=95.1
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe 148 (203)
|++|+.++.|+||+||+++|+ +||||+|+||+++. +||||+||||+|++|+++|++.|...|..++.+|+
T Consensus 2 Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~---------~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p~ 72 (356)
T cd06110 2 GLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENS---------TFEEVAYLLWNGELPTAEELDAFKAQLAAERELPA 72 (356)
T ss_pred CCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCCH
Confidence 778888889999999999997 99999999999986 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhCCCc
Q psy14238 149 HVVTMLNNFPNHLHPMSQFSAAITALNSES 178 (203)
Q Consensus 149 ~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s 178 (203)
.+.++++.||+++|||++|+++|++++..+
T Consensus 73 ~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~ 102 (356)
T cd06110 73 EIIDLLKLLPKDAHPMDVLRTAVSALALYD 102 (356)
T ss_pred HHHHHHHhCCCCCCchHHHHHHHHhhhhcC
Confidence 999999999999999999999999998654
No 32
>PRK14033 citrate synthase; Provisional
Probab=99.89 E-value=2.9e-23 Score=190.26 Aligned_cols=105 Identities=21% Similarity=0.356 Sum_probs=96.8
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS 142 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~ 142 (203)
+++|+. |+.++.|+||+||+++|+ +||||+|+||+++. +||||+||||+|++|+.+|++.|...|.+
T Consensus 9 ~~~GL~---gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~---------sfeeva~LL~~G~lP~~~el~~f~~~l~~ 76 (375)
T PRK14033 9 IKKGLA---GVVVDTTAISKVVPETNSLTYRGYPVQDLAARC---------SFEEVAYLLWNGELPTDAELALFSQRERA 76 (375)
T ss_pred CCCCCC---CceEeeccCeEEECCCCeEEECCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666665 666678899999999876 99999999999987 99999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHh
Q psy14238 143 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKF 180 (203)
Q Consensus 143 ~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f 180 (203)
++.+|+.+.+++..||+++|||++|+++|++++..+.+
T Consensus 77 ~~~~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~ 114 (375)
T PRK14033 77 YRRLDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPE 114 (375)
T ss_pred ccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999999976654
No 33
>PRK12350 citrate synthase 2; Provisional
Probab=99.75 E-value=1e-18 Score=159.31 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=67.2
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHH---HHHHH
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQ---ALSKS 139 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~---~f~~~ 139 (203)
+|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||+.+.+ .|+..
T Consensus 1 ~~~GL~~v~~~---~s~Is~idg~~G~L~YRGy~i~dLa~~~---------sFeEva~LL~~G~LP~~~~~~~~~~~~~~ 68 (353)
T PRK12350 1 FVPGLEGVVAF---ETEIAEPDGDGGALRYRGVDIEDLVGRV---------TFEDVWALLVDGRFGPGLPPAEPFPLPVH 68 (353)
T ss_pred CCCCCCCceeE---eeeCcceeCCCCEEEECCccHHHHhccC---------CHHHHHHHHHCCCCCCcchhhhccchHHH
Confidence 47877766555 6799999999999 99999999999997 999999999999999988544 33332
Q ss_pred HHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHH
Q psy14238 140 WASRAELPSHVVTMLNNFPNHLHPMSQFSAAI 171 (203)
Q Consensus 140 L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~v 171 (203)
+. ..+..+...+.. .|||..|++++
T Consensus 69 ~~---~~~~~~~~~~~~----~~~~~~l~~~~ 93 (353)
T PRK12350 69 LG---DARVDVQAALAM----LAPVWGFRPLL 93 (353)
T ss_pred hh---ccchhhhhhHHH----hhHHHHHHhhc
Confidence 22 233333333333 57899888865
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=99.62 E-value=2.9e-15 Score=131.84 Aligned_cols=97 Identities=32% Similarity=0.418 Sum_probs=78.2
Q ss_pred ccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCC---------------CHHHH
Q psy14238 70 GMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVP---------------SEAQV 133 (203)
Q Consensus 70 g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLP---------------t~~el 133 (203)
|++|+.+..|+||+||+++|. +||||+|+||++++ +||||+||||+|+|| +++|.
T Consensus 2 gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~---------~f~ev~~LL~~G~lP~~~~nfl~m~~g~~p~~~~~ 72 (265)
T cd06101 2 GLRGVAALESEISVIDGDEGGLRYRGYPIEELAENS---------SFEEVAYLLLTGELPSYAENFLYMLGGEEPDPEFA 72 (265)
T ss_pred CCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCCCCcHHHHHHHHhcCCCCCHHHH
Confidence 566777778899999999987 99999999999997 999999999999997 89999
Q ss_pred HHHHHHHHhhcC--CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 134 QALSKSWASRAE--LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 134 ~~f~~~L~~~~~--lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
+.|...|.-+.. +...+....-.-...++|-..+.+++++|.
T Consensus 73 ~~l~~~Lvl~aDHg~naST~aaRv~aSt~ad~~~av~agl~al~ 116 (265)
T cd06101 73 KAMDLALILHADHEGNASTFTARVVGSTLSDPYSAIAAAIAALK 116 (265)
T ss_pred HHHHHHHhhhcCCCCchHHHHHHHHHccCCcHHHHHHHHHHhCC
Confidence 999998875442 344333322333356799999999999983
No 35
>PRK06224 citrate synthase; Provisional
Probab=99.42 E-value=5.9e-13 Score=116.90 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=71.5
Q ss_pred eeeeeceecCCCCeeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc---CCCHH-HHH
Q psy14238 77 LVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRA---ELPSH-VVT 152 (203)
Q Consensus 77 ~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~---~lpe~-v~~ 152 (203)
..|.||++|+++ +.||||+|.||+++. +|+|++||||+|++|+++|++.|...|..+. .-|.- ..+
T Consensus 9 ~~T~i~~~~~~~-l~yrG~~~~dL~~~~---------sf~e~~~lll~G~lP~~~e~r~f~a~Lv~~adHg~~~St~aar 78 (263)
T PRK06224 9 WRTSISDVTPEE-IYVRGYDLEDLIGKL---------SFTDMIFLLLRGRLPTPNEARLLDAVLVALVDHGLTPSAAAAR 78 (263)
T ss_pred CceeeeeecCCe-eEECCccHHHHhhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 356899999887 999999999999987 9999999999999999999999999998654 23322 333
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 153 MLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 153 ~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
+..+ ..++++..+++++++++
T Consensus 79 ~~as--t~~~l~~av~agl~a~G 99 (263)
T PRK06224 79 MTAS--GGESLQGAVAAGLLALG 99 (263)
T ss_pred HHHh--cCccHHHHHHHHHhhcc
Confidence 4433 24799999999998885
No 36
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=98.96 E-value=4.6e-09 Score=93.63 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=72.5
Q ss_pred cccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCC------------------------
Q psy14238 73 GIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVP------------------------ 128 (203)
Q Consensus 73 g~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLP------------------------ 128 (203)
|.+.+.|.||.|++ ++++||||++.||+++. +||+|++|||+|++|
T Consensus 17 g~~~~~t~It~i~~-~~~~yRG~da~~L~~~~---------~~e~va~LLw~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (282)
T cd06102 17 GEPVLESAITLITE-GRLFYRGRDAVELAETA---------TLEEVAALLWDGDEAARLLRLLAAALLGAAPSDAPVHRR 86 (282)
T ss_pred CCceEEeeeEEEeC-CeeEEcCccHHHHHhcC---------CHHHHHHHHHcCCchHHHHHHHHHHhccCCCCcccHHHH
Confidence 45567889999985 45899999999999997 999999999999999
Q ss_pred -------CHHHHHHHHHHHHh---hcC-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 129 -------SEAQVQALSKSWAS---RAE-LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 129 -------t~~el~~f~~~L~~---~~~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
++.+.+.|...|.- |.. .+.....+..+ ..++|-..+.+++++|.
T Consensus 87 ~~~~~~~~~~~~~~l~~~LVL~ADHgln~St~aaRv~AS--tgadl~~avaagl~al~ 142 (282)
T cd06102 87 LARAWGLDPAAADLLRRALVLLADHELNASTFAARVAAS--TGASLYAAVLAGLAALS 142 (282)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCcHHHHHHHHHHhCC
Confidence 88888999988864 332 22233444444 56789999999999983
No 37
>PLN02522 ATP citrate (pro-S)-lyase
Probab=98.67 E-value=1e-07 Score=92.79 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=70.2
Q ss_pred ceeeeeceecCCCCeeecCccHHHHHh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh---hcCCCHH--
Q psy14238 76 GLVCETSVLDPEEGIRFRGLSIPECQK-VLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS---RAELPSH-- 149 (203)
Q Consensus 76 ~~~t~iS~IDg~~GI~YRGy~I~eLa~-~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~---~~~lpe~-- 149 (203)
...|.||..++++ ++||||+|.||.+ +. +|.+|+||||+|+.|++.|.+.|...|.- |..-+..
T Consensus 352 ~~~t~I~~~~~~~-~~~rG~~i~dlig~~~---------~f~~~~~ll~~g~~p~~~~~~~ld~~Lvl~ADHG~~aSt~~ 421 (608)
T PLN02522 352 HIVSTISDDRGEE-PCYAGVPMSSIIEKDY---------GVGDVISLLWFKRSLPRYCTKFIEMCIMLCADHGPCVSGAH 421 (608)
T ss_pred ceEEEeecCCCCe-eEECCccHHHHhccCC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCccHHH
Confidence 3466888888776 8999999999998 46 89999999999999999999999988864 4443333
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 150 VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 150 v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
...+..+- ..++.+.+.+++++++
T Consensus 422 aarv~ASt--g~dl~savaaGl~alG 445 (608)
T PLN02522 422 NTIVTARA--GKDLVSSLVSGLLTIG 445 (608)
T ss_pred HHHHhhcc--CCcHHHHHHHHHHhcC
Confidence 34454443 4589999999999985
No 38
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=98.47 E-value=5e-07 Score=77.72 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=56.8
Q ss_pred CccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--C-CHHHHHHHhcCCCC-CCHHHHHHH
Q psy14238 94 GLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--L-PSHVVTMLNNFPNH-LHPMSQFSA 169 (203)
Q Consensus 94 Gy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--l-pe~v~~~i~~~P~~-aHPM~~L~~ 169 (203)
||+|.||+++. +|+|++|||++|++|+++|++.|...|..+.. + ...+....-.-... ++|-..+.+
T Consensus 1 G~~~~dL~~~~---------sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaa 71 (227)
T cd06100 1 GYDLSDLIGKI---------SFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAA 71 (227)
T ss_pred CCCHHHHHhCC---------CHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHH
Confidence 89999999987 89999999999999999999999999875442 3 33433222222233 788899999
Q ss_pred HHHHhC
Q psy14238 170 AITALN 175 (203)
Q Consensus 170 ~vsaL~ 175 (203)
++++++
T Consensus 72 g~~a~G 77 (227)
T cd06100 72 GLLGIG 77 (227)
T ss_pred HHhccC
Confidence 998885
No 39
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=94.67 E-value=0.17 Score=43.38 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=48.1
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
+|-+.+|++++|+.|++++.+.|...|.-+.. ++..+....-.-...++|-..+.++++++.
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aSt~ad~~~av~Agl~al~ 64 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHEGNASTFTARVVGSTGSDPYSAIAAAIGALK 64 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhccCCCHHHHHHHHHHHcC
Confidence 47799999999999999999999999875542 455444333333456799999999999983
No 40
>PRK14037 citrate synthase; Provisional
Probab=93.69 E-value=0.22 Score=46.30 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.-+|-+.+|++++|+.|++++.+.|...|.-+.. ++..+....-.-...++|-..++++|++|.
T Consensus 149 ~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~ 214 (377)
T PRK14037 149 SDSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALK 214 (377)
T ss_pred CCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhcc
Confidence 3489999999999999999999999999976552 676665443333467899999999999983
No 41
>PRK14034 citrate synthase; Provisional
Probab=90.40 E-value=0.65 Score=43.21 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--C--CHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--L--PSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--l--pe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.+|++++|+.|+..+.+.|...|.-+.. + +..+.+++.+ ..++|...+++++++|.
T Consensus 150 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aS--t~~d~ysav~agi~al~ 214 (372)
T PRK14034 150 LSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVA--TLSDVYSGITAAIGALK 214 (372)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhc--cCCcHHHHHHHHhcccC
Confidence 489999999999999999999999999975541 3 3344444444 46689999999998864
No 42
>PRK14035 citrate synthase; Provisional
Probab=90.37 E-value=0.99 Score=41.99 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc---C-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRA---E-LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~---~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
..+|-+.+|++++|+.|+..+.+.|...|.-+. . .+..+.+++-+ ..++|...+.+++++|.
T Consensus 149 ~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~ 214 (371)
T PRK14035 149 DLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLK 214 (371)
T ss_pred CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 358999999999999999999999999987554 2 33334444444 45689999999998874
No 43
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=90.36 E-value=0.72 Score=42.86 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~--~lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.+|++++|+.|++.+.+.|...|.-+. .+. ....+++.+ ..++|...+.+++++|.
T Consensus 151 ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaS--t~ad~~s~~~aai~al~ 215 (373)
T cd06112 151 LDYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGS--TLADPYAVISSAIGTLS 215 (373)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 48999999999999999999999999987554 233 344555554 35789999999998884
No 44
>PRK12349 citrate synthase 3; Provisional
Probab=89.69 E-value=1.6 Score=40.51 Aligned_cols=61 Identities=16% Similarity=0.320 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHHH--HHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHVV--TMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~--~lpe~v~--~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+|++++|+.|++.+.+.|...|.-+. .++..+. +++.+ ..++|-..+++++++|.
T Consensus 153 l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aS--t~ad~~~av~agl~al~ 217 (369)
T PRK12349 153 LSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIAS--TQSDLYGALTGAVASLK 217 (369)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHc--cCccHHHHHHHHHHhcc
Confidence 47899999999999999999999999997654 2555543 44444 56799999999999983
No 45
>PRK14036 citrate synthase; Provisional
Probab=89.59 E-value=0.89 Score=42.35 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+|++++|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|...+++++++|.
T Consensus 152 l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aS--t~ad~ys~v~agi~aL~ 216 (377)
T PRK14036 152 LDYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTAS--TLTDPYAVIASAVGTLA 216 (377)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 489999999999999999999999999975542 3333 3344333 45689999999998874
No 46
>PRK14033 citrate synthase; Provisional
Probab=86.88 E-value=2.7 Score=39.08 Aligned_cols=61 Identities=23% Similarity=0.214 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+|++++|+.|++.+.+.|...|.-+.. +... +.++..+ ..++|-..+++++++|.
T Consensus 157 ~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 157 LGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 379999999999999999999999988875431 3333 4445554 56799999999999984
No 47
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=86.66 E-value=3.1 Score=38.53 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~--~lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+|++++|+.|++++.+.|...|.-+. .+. ..+.++..+ ..++|-..+++++++|.
T Consensus 147 ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aS--t~ad~~~av~agl~aL~ 211 (362)
T cd06111 147 LGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITS--TLSDIYSAITGAIGALK 211 (362)
T ss_pred cCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHc--cCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999999876443 133 334455555 45789999999999874
No 48
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=86.01 E-value=3.4 Score=38.92 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhC-CCCCHHHHHHHHHHHHh---hcCCC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTG-DVPSEAQVQALSKSWAS---RAELP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~G-eLPt~~el~~f~~~L~~---~~~lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+|++++| +.|++++.+.|...|.- |..++ ..+.++..+ ..++|...++++|++|.
T Consensus 174 ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aS--t~ad~~~avaagi~al~ 240 (406)
T cd06113 174 LSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSLK 240 (406)
T ss_pred CCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHc--cCCCHHHHHHHHHHHcc
Confidence 3899999999999 59999999999999874 44233 344555555 45799999999999983
No 49
>KOG2617|consensus
Probab=85.43 E-value=0.032 Score=52.60 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=80.1
Q ss_pred HHHhhCcccchHHHHHHHhh----CCcccceEEecccCccccc------------ccceeeeeceecCCCCeeecCccHH
Q psy14238 35 VLAAKIPSEQERVKNFRKNY----GSTKVGEVTVDMMYGGMRG------------IKGLVCETSVLDPEEGIRFRGLSIP 98 (203)
Q Consensus 35 ~~~~~ip~~~~~~~di~~~~----~~~~ig~~T~d~g~~g~rg------------~~~~~t~iS~IDg~~GI~YRGy~I~ 98 (203)
-+....+..+++++++-++| .+.. ..+++.-.++++| +.++.-.+.-++.+++++|++.-++
T Consensus 229 Nf~~mlg~~~~~f~~lmrly~~iHadHE--~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~~~~ 306 (458)
T KOG2617|consen 229 NFARMLGSRQPDFAQLMRLYVGIHADHE--GGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGKLIE 306 (458)
T ss_pred hHHHHHccCChHHHHHHHHeeeeecccc--cCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHHhHH
Confidence 34445555566666666553 3332 3456666677766 4333445566666666666666666
Q ss_pred HHHhhCCCCCCCCCCCHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHH
Q psy14238 99 ECQKVLPKAKGGEEPLPEGLFWLLVT-----GDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITA 173 (203)
Q Consensus 99 eLa~~~pk~~~~~~~~fEev~yLLl~-----GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsa 173 (203)
|+-+..++.+..++.--+--.|+++. +-.+|..+....++...+| +|++ --+...++-.-++|.+|....-+
T Consensus 307 Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr~tDPR~~~~~efA~k~--~~~d-~l~~l~~~l~~~~p~vl~e~gk~ 383 (458)
T KOG2617|consen 307 EIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLRKTDPRYKVQREFALKH--LPDD-PLFLLVSALYKIAPGVLTEHGKV 383 (458)
T ss_pred HhccccchhhhhHhhHHhhcccccccccccccccCCCchhhHHHHHHHhc--CCCC-cchhhhHHHHHhChHHHHHhccc
Confidence 66655543332222211122233333 1224444444444444333 2221 11111222234566666666656
Q ss_pred hCCCcHhHHHhhccCCcccCcccccCC
Q psy14238 174 LNSESKFAKAYNDGVHKSKYWEYIQQP 200 (203)
Q Consensus 174 L~~~s~f~~~y~~g~~k~~yW~~~~eD 200 (203)
..+..-+...+.-++.-.-|||-.|++
T Consensus 384 knp~PNVD~~SGvll~~yGl~e~~fyT 410 (458)
T KOG2617|consen 384 KNPYPNVDAHSGVLLQYYGLPELFFYT 410 (458)
T ss_pred CCCCCcHHHHHHHHHHhcCCcHHHHHH
Confidence 666666766664445666666655543
No 50
>PRK12351 methylcitrate synthase; Provisional
Probab=85.33 E-value=3.7 Score=38.37 Aligned_cols=60 Identities=28% Similarity=0.315 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
-+|-+-+|++++|+.|++.+.+.|...|.-+.. +.. .+.++..+ ..++|-..++++|++|
T Consensus 157 ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL 220 (378)
T PRK12351 157 DSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGAL 220 (378)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhc
Confidence 378999999999999999999999999975542 333 34445554 5679999999999998
No 51
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=85.18 E-value=4.8 Score=37.31 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 111 EEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 111 ~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
...+|.+.+|++++|+.|++++.+.|...|.-+.. +. ..+.+++.+ ..++|-..+++++++|.
T Consensus 145 ~~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 145 EDDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred CCccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 44589999999999999999999999999875441 33 334555555 56799999999999984
No 52
>PRK14032 citrate synthase; Provisional
Probab=84.59 E-value=4.6 Score=38.58 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhCC-CCCHHHHHHHHHHHHh---hcCCCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGD-VPSEAQVQALSKSWAS---RAELPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-LPt~~el~~f~~~L~~---~~~lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++.|++|+ .|++.+.+.|...|.- |..++.. ..+++.+ ..++|-..+++||++|
T Consensus 204 ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aS--t~ad~ysavaagi~aL 269 (447)
T PRK14032 204 LSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSS--SGTDTYSAIAAAIGSL 269 (447)
T ss_pred CCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHc--cCCcHHHHHHHHHHhc
Confidence 38999999999999 9999999999999874 4434444 4455555 5679999999999998
No 53
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=84.26 E-value=3.8 Score=38.03 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.+|.+++|+.|++++.+.|...|.-+.. +. ....++..+ ..++|-..+++++++|.
T Consensus 145 ~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 145 DSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 489999999999999999999999999875441 33 334455554 56899999999999983
No 54
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=83.24 E-value=5 Score=36.94 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.++.+++|+.|++++.+.|...|.-+.. ++. .+.+++.+ ..++|-..+++++++|.
T Consensus 147 ~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aS--t~ad~~~av~agl~al~ 211 (358)
T cd06118 147 LSYAENFLYMLFGEEPDPEEAKAMDLALILHADHEGNASTFTARVVAS--TLSDMYSAIAAAIAALK 211 (358)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHc--cCCCHHHHHHHHHHHcc
Confidence 378899999999999999999999999875542 454 35556666 45799999999999983
No 55
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=82.93 E-value=6.5 Score=36.08 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCHHHHHHHHH--hCCCCCHHHHHHHHHHHHhhc--CCCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLV--TGDVPSEAQVQALSKSWASRA--ELPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl--~GeLPt~~el~~f~~~L~~~~--~lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-|.++.+| +|+-|++++.+.|...|.-+. .+... +.++..+ ..++|...++++++++.
T Consensus 147 ~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aS--t~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 147 LSYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAAS--TGADLYSAVAAGLAALS 213 (356)
T ss_dssp SSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT--TT--HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhc--cCcchhHHHHhhhhhcc
Confidence 37889999999 999999999999999998654 34444 4455544 67899999999999985
No 56
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=82.57 E-value=5.3 Score=36.79 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc---C-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA---E-LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~---~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.+|++++|+.|++++.+.|...|.-+. . .+..+.+++.+- .++|-..+.+++++|.
T Consensus 147 ~~~a~~~l~~l~g~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt--~ad~~~av~agl~al~ 211 (356)
T cd06110 147 LSHAANFLYMLTGEKPSEEAARAFDVALILHADHELNASTFAARVVAST--LSDMYSAVTAAIGALK 211 (356)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhc--CCCHHHHHHHHHhhcC
Confidence 47999999999999999999999999987544 2 333455667664 4789999999999983
No 57
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=82.47 E-value=5.8 Score=36.84 Aligned_cols=61 Identities=26% Similarity=0.282 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+-++.+++|+.|++++.+.|...|.-+.. +.. ...++..+ ..++|-..+++++++|.
T Consensus 148 ~s~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aS--t~ad~~sav~agi~aL~ 212 (366)
T cd06117 148 DSIGGHFLHLLHGEKPSESWEKAMHISLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 212 (366)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHc--cCCcHHHHHHHHHHhcc
Confidence 378899999999999999999999999975542 333 34455555 45789999999999873
No 58
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=81.82 E-value=6.2 Score=36.40 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc---C-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA---E-LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~---~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+-++.+++|+.|+.++.+.|...|.-+. . .+..+.++..+ ..++|...++++|++|.
T Consensus 136 ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~al~ 200 (349)
T cd06109 136 LSHAADYLRMLTGEPPSEAHVRALDAYLVTVADHGMNASTFTARVIAS--TEADLTSAVLGAIGALK 200 (349)
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 48999999999999999999999999997543 2 33344455555 56799999999999983
No 59
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=66.88 E-value=24 Score=33.26 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCCH-HHHHHHHHHHHhhcC--CCHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSE-AQVQALSKSWASRAE--LPSHVVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~-~el~~f~~~L~~~~~--lpe~v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
-++-+-+..+|+|+.|+. .+.+.|...|.-+.. ++..+....-.-...++|-+.+.+||++|
T Consensus 162 ~s~a~nfL~ml~g~~p~~~~~~~a~d~~LiL~ADHe~NASTftarvvaST~sd~ys~i~agi~aL 226 (390)
T COG0372 162 LSYAENFLYMLFGEPPSPPVEARAMDRALILHADHELNASTFTARVVASTGSDLYACIAAGIGAL 226 (390)
T ss_pred ccHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCcHHHHHHHHHHHc
Confidence 488899999999999994 999999999875542 55554433333346789999999999999
No 60
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=63.91 E-value=18 Score=31.53 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=44.4
Q ss_pred ccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCC
Q psy14238 95 LSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWASRAELPSHVVTMLNNFP 158 (203)
Q Consensus 95 y~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P 158 (203)
||-+||.+... .++.+.|==.+|+ +|+.++.++|-++|.....+.+.+.+-+.-.|
T Consensus 24 ~ty~el~~~~g--------~p~~~l~RYv~g~~~P~~~~a~~~~~~l~~~~~~~~~l~~ri~~~~ 80 (238)
T PRK08558 24 YTYEELSSITG--------LPESVLNRYVNGHVLPSVERAREIVEKLGPYYNLEEEVKARIKVDD 80 (238)
T ss_pred cCHHHHHHHHC--------CCHHHHHHHHcCCcCCCHHHHHHHHHHHHHhhhhHHHHHhhcccCC
Confidence 58888987763 7899999999999 69999999999999987766555555554344
No 61
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=62.86 E-value=5.9 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.7
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
.||||+++||.+- +.||++=||
T Consensus 16 ~yRG~~l~~L~~m----------~~~e~~~L~ 37 (143)
T PTZ00096 16 TYRGVELEKLLAL----------PEEELVELF 37 (143)
T ss_pred eeecCCHHHHHcC----------CHHHHHHHc
Confidence 8999999999985 678877665
No 62
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=61.19 E-value=8.5 Score=33.10 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
.|.-=+||=|+|.+||.+|++.|.+
T Consensus 26 ~~lRRv~LDL~G~~PT~eEv~~Fl~ 50 (208)
T PF07583_consen 26 TFLRRVYLDLTGLPPTPEEVRAFLA 50 (208)
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 5666789999999999999999965
No 63
>PRK12350 citrate synthase 2; Provisional
Probab=61.18 E-value=34 Score=31.73 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhhc---C-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD---VPSEAQVQALSKSWASRA---E-LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge---LPt~~el~~f~~~L~~~~---~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.++-+-++.+++|. .|++++.+.|...|.-+. . .+....++..+ ..++|-..++++|++|.
T Consensus 132 ls~a~nfl~ml~g~~~~~p~~~~~~~ld~~LiL~ADHg~naSTfaaRv~aS--t~adlysav~agi~aL~ 199 (353)
T PRK12350 132 IDHAATILERFMGRWRGEPDPAHVAALDAYWVSAAEHGMNASTFTARVIAS--TGADVAAALSGAIGALS 199 (353)
T ss_pred CCHHHHHHHHhccCccCCCCHHHHHHHHHHHHHhccCCCCcchHHHHHHhc--cCCcHHHHHHHHHhhcC
Confidence 47889999999999 999999999999997554 2 33344455554 56799999999999983
No 64
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=60.51 E-value=7.2 Score=31.67 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.5
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
.|||++++||.+- +.+|.+=||
T Consensus 8 ~yrG~~l~~L~~m----------~~~~~~~l~ 29 (134)
T PRK04038 8 TYRGYTLEELQEM----------SLEEFAELL 29 (134)
T ss_pred eecccCHHHHHcC----------CHHHHHHHc
Confidence 8999999999985 678877665
No 65
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=59.52 E-value=57 Score=25.35 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=24.4
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWA 141 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~ 141 (203)
.-||++.+||++.+.- + ...++-+..|+ -|+.+-+..+.+.|.
T Consensus 15 ~~~Glsq~eLA~~~Gi-------s-~~~is~iE~g~~~ps~~~l~kIa~aL~ 58 (120)
T PRK13890 15 DERHMTKKELSERSGV-------S-ISFLSDLTTGKANPSLKVMEAIADALE 58 (120)
T ss_pred HHcCCCHHHHHHHHCc-------C-HHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 4577888888877631 2 24444455554 466666655555543
No 66
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=56.98 E-value=19 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~l 146 (203)
..|-|-||+=.|+..+.+|.-.+-+.|.+...+
T Consensus 31 GselVdWL~~~~~~~~R~eAv~~gq~Ll~~g~i 63 (81)
T cd04448 31 GKELVNWLIRQGKAATRVQAIAIGQALLDAGWI 63 (81)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCE
Confidence 458899999999999999999999999987754
No 67
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=55.24 E-value=9.7 Score=30.97 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=17.8
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
.|||++++||.+- +.+|.+=||
T Consensus 6 ~yrG~~l~~L~~m----------~~~e~~~l~ 27 (135)
T TIGR01025 6 RYRGYTLEELQDM----------SLEELAKLL 27 (135)
T ss_pred eecccCHHHHHcC----------CHHHHHHHc
Confidence 7999999999975 567766665
No 68
>KOG1741|consensus
Probab=50.73 E-value=47 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHhhcCCCHHHHH----HHhcCCCCCCHHHHHHHHHHH
Q psy14238 138 KSWASRAELPSHVVT----MLNNFPNHLHPMSQFSAAITA 173 (203)
Q Consensus 138 ~~L~~~~~lpe~v~~----~i~~~P~~aHPM~~L~~~vsa 173 (203)
..+.....||+.+.+ =|.++|+++||--+...||..
T Consensus 30 k~i~knp~LP~~~r~ea~~kl~alPrns~ptrI~NRCv~T 69 (103)
T KOG1741|consen 30 KEISKNPILPEKLRDEAAEKLQALPRNSAPTRIKNRCVFT 69 (103)
T ss_pred HHHHhCCcccHHHHHHHHHHHhcCccccchHHHHHHHHhc
Confidence 556677789987653 479999999999999999865
No 69
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=50.47 E-value=46 Score=31.20 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-++-+-+.-+++|+ -|++++.+.|...|.-+.. +... +.+++.+ ..++|...+++++++|.
T Consensus 154 ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~STfaarv~aS--t~ad~ysav~agi~aL~ 223 (384)
T cd06116 154 LSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCSTSAMRSVGS--SRADPYTAVAAAVAALY 223 (384)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCchhHHHhhhhc--cCCCHHHHHHHHHHhcc
Confidence 37778888899998 8999999999999975542 3433 4444444 56799999999999965
No 70
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=48.51 E-value=40 Score=31.74 Aligned_cols=61 Identities=20% Similarity=0.117 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+-++.+++|+ -|++++.+.|...|.-+.. +. ....++..+ ..++|-..+++++++|.
T Consensus 176 ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~~n~STfaaRv~aS--t~adl~sav~agl~al~ 245 (400)
T cd06114 176 LSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHEQNASTSTVRMVGS--SGANLFASISAGIAALW 245 (400)
T ss_pred cCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCCCcchHHHHHHHhc--cCCcHHHHHHHHHHhcc
Confidence 37889999999999 8899999999999875441 33 334455555 56789999999999983
No 71
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=46.96 E-value=18 Score=28.17 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcCC
Q psy14238 122 LVTGDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 122 Ll~GeLPt~~el~~f~~~L~~~~~l 146 (203)
.+.|.|||.+|++.|-....+.-.+
T Consensus 67 i~~g~lPt~~eVe~Fl~~v~~di~~ 91 (105)
T PF09702_consen 67 IIVGYLPTDEEVEDFLDDVERDIYY 91 (105)
T ss_pred EecCCCCChHHHHHHHHHHHHHHHH
Confidence 4679999999999998888764433
No 72
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=42.11 E-value=34 Score=32.43 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CCHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LPSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+-++.+++|+ -|++++.+.|...|.-++. +...+....-.-...++|-..+++++++|.
T Consensus 181 ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~STfaaRv~aSt~ad~ysav~agi~aL~ 250 (412)
T TIGR01798 181 LSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHEQNASTSTVRLAGSSGANPFACIAAGIAALW 250 (412)
T ss_pred CCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCCCCcccceeeeeecCCCCHHHHHHHHhhhcc
Confidence 48889999999998 8999999999999875542 333332222222345789999999998883
No 73
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=40.47 E-value=68 Score=22.05 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCCCHHHHHHH---HHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHh
Q psy14238 111 EEPLPEGLFWL---LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLN 155 (203)
Q Consensus 111 ~~~~fEev~yL---Ll~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~ 155 (203)
+..+++|+.++ ++.|++| +.|...|--.++-++.-++++.-+.+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s-~~qiaAfL~al~~kget~~Eiag~~~ 59 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVS-DAQIAAFLMALRMKGETPEEIAGFAK 59 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS--HHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 33466665544 5788875 78888888888877766666654443
No 74
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=40.24 E-value=45 Score=25.06 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhh-cCCCHHHHHHHhc
Q psy14238 126 DVPSEAQVQALSKSWASR-AELPSHVVTMLNN 156 (203)
Q Consensus 126 eLPt~~el~~f~~~L~~~-~~lpe~v~~~i~~ 156 (203)
.+-|.+|+.++..+|..+ +.+|+.|..++.-
T Consensus 28 ~~~~~~el~~l~~El~DRFG~~P~ev~~L~~~ 59 (101)
T PF03461_consen 28 SAESEEELEDLREELIDRFGPLPEEVENLLEL 59 (101)
T ss_dssp C--SHHHHHHHHHHHHHHH-S--HHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 446889999999999876 5799999988764
No 75
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=39.19 E-value=47 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q psy14238 115 PEGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 115 fEev~yLLl~GeLPt~~el~~f~~~L~~~~~l 146 (203)
-+-|-||+=+.++-+.+|..++-+.|.++..+
T Consensus 32 ~~~v~WL~~~~~~~~~~EA~~~~~~ll~~gli 63 (88)
T cd04450 32 KAIVQWLMDCTDVVDPSEALEIAALFVKYGLI 63 (88)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
Confidence 36799999999999999999999999988754
No 76
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=38.53 E-value=89 Score=29.60 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CC--HHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LP--SHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lp--e~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.++-+-+.-+++|+ -|++++.+.|...|.-+.. +. ....++..+ ..++|-+.++++|++|.
T Consensus 181 ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~~naSTfaarv~aS--t~ad~ysav~agi~aL~ 250 (410)
T cd06115 181 LSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHEMNCSTAAVRHLAS--SGVDVYTAVAGAVGALY 250 (410)
T ss_pred CCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccCCCchHHHHHHHHh--cCCCHHHHHHHHHhhcc
Confidence 47888888899997 8999999999999975542 33 344455544 56799999999999984
No 77
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=36.55 E-value=1.5e+02 Score=24.43 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=38.6
Q ss_pred cCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCC-CCHHHHHHHHHHHHhhcCCCHHHHHHHhcCC
Q psy14238 93 RGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV-PSEAQVQALSKSWASRAELPSHVVTMLNNFP 158 (203)
Q Consensus 93 RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeL-Pt~~el~~f~~~L~~~~~lpe~v~~~i~~~P 158 (203)
+|.+-+++++... .-+.-..=+++|.- |+.++.+...+.| .||+.....+..+|
T Consensus 20 KGLTwe~IAe~iG--------~sevwvaaa~lGQ~~ls~e~A~kla~lL----gL~~e~~~~l~~~P 74 (150)
T TIGR00673 20 KGLTFADIADGLG--------LAEVFVAAALYGQAAAPADEARLVGAKL----DLDEDSILELQMAP 74 (150)
T ss_pred cCCCHHHHHHHHC--------CCHHHHHHHHhCCCCCCHHHHHHHHHHh----CcCHHHHHHHhcCC
Confidence 5778888888763 22333444566864 7888888887777 68988887788888
No 78
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=36.54 E-value=52 Score=25.01 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=35.6
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
+|+..+-+.|.-. =|=|-||+-.|+.+|.+|.-.+-+.|-..+.+.
T Consensus 28 ~~~l~~y~~cFvG-----------sElVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~ 73 (93)
T cd04440 28 DYHLKTYKSVVPA-----------SKLVDWLLAQGDCRTREEAVILGVGLCNNGFMH 73 (93)
T ss_pred eeccEEcccccch-----------hHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4555555555432 367999999999999999999999998877554
No 79
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=36.13 E-value=50 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=28.9
Q ss_pred CHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCC
Q psy14238 114 LPEGLFWLLVTGD-VPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 114 ~fEev~yLLl~Ge-LPt~~el~~f~~~L~~~~~lp 147 (203)
..|-|-||+-+++ ..|.+|.-.+-+.|.+++.+.
T Consensus 32 G~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~I~ 66 (83)
T cd04449 32 GSEAVSWLINNFEDVDTREEAVELGQELMNEGLIE 66 (83)
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 5688999999977 899999999999998877543
No 80
>KOG4720|consensus
Probab=35.32 E-value=1.2e+02 Score=28.56 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=48.2
Q ss_pred cceEEecccCcccccccceeeeeceecCC-CCeeecCccHHH-HHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH-HHHH
Q psy14238 59 VGEVTVDMMYGGMRGIKGLVCETSVLDPE-EGIRFRGLSIPE-CQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEA-QVQA 135 (203)
Q Consensus 59 ig~~T~d~g~~g~rg~~~~~t~iS~IDg~-~GI~YRGy~I~e-La~~~pk~~~~~~~~fEev~yLLl~GeLPt~~-el~~ 135 (203)
.|.|.||.--+ .+-|||=+ .|--|++|+|-- ..|.+ ..+||=|=|. |+++ |++.
T Consensus 257 ~~Niiy~~~~~----------~v~fIDYEYa~yNY~afDIgNHFnE~a---------Gv~evDYSly----p~rE~Q~qw 313 (391)
T KOG4720|consen 257 CGNIIYDSEKG----------SVEFIDYEYAGYNYQAFDIGNHFNEYA---------GVEEVDYSLY----PTREEQLQW 313 (391)
T ss_pred hcceeeccccC----------cEEEEeecccccchhheehhhhHHhhc---------CCCccchhcC----CCHHHHHHH
Confidence 36677775554 67899966 455999999874 44544 4556555544 7876 5555
Q ss_pred HHHHHHhh--cCCC-HHHHHHH---hcCCCCCCHHHH
Q psy14238 136 LSKSWASR--AELP-SHVVTML---NNFPNHLHPMSQ 166 (203)
Q Consensus 136 f~~~L~~~--~~lp-e~v~~~i---~~~P~~aHPM~~ 166 (203)
++.-|... ..+. .+|..++ +.|--.+|-.-.
T Consensus 314 l~~YLq~~kg~evs~~eVe~lfvqvn~FalAsHlfWa 350 (391)
T KOG4720|consen 314 LRDYLQAYKGKEVSDTEVETLFVQVNQFALASHLFWA 350 (391)
T ss_pred HHHHHhhccCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555432 2233 3454443 334444454333
No 81
>PRK02866 cyanate hydratase; Validated
Probab=35.19 E-value=1.8e+02 Score=23.95 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=40.4
Q ss_pred cCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCC
Q psy14238 93 RGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNH 160 (203)
Q Consensus 93 RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~ 160 (203)
+|++-+++++... .-+...-=+++|. =|+.++.+...+.| .||+++...+..+|..
T Consensus 17 kGLTw~~IA~~iG--------~S~v~vaaa~lGQ~~ls~e~A~kla~~L----gL~~~~~~~l~~~P~r 73 (147)
T PRK02866 17 KGLTWADIAEAIG--------LSEVWVTAALLGQMTLPAEEAEKVAELL----GLDEDAVALLQEVPYR 73 (147)
T ss_pred cCCCHHHHHHHhC--------CCHHHHHHHHhCCCCCCHHHHHHHHHHh----CCCHHHHHHHhcCCcC
Confidence 5788888888763 2233344456675 47899988887766 6999999999988833
No 82
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=34.67 E-value=90 Score=20.51 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=27.4
Q ss_pred cCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC--CCCHHHHHHHHHHHH
Q psy14238 93 RGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD--VPSEAQVQALSKSWA 141 (203)
Q Consensus 93 RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge--LPt~~el~~f~~~L~ 141 (203)
||+++.+|++... --...++=+++|. -|+.+.+..+...|.
T Consensus 9 ~~it~~~La~~~g--------is~~tl~~~~~~~~~~~~~~~l~~ia~~l~ 51 (63)
T PF13443_consen 9 RGITQKDLARKTG--------ISRSTLSRILNGKPSNPSLDTLEKIAKALN 51 (63)
T ss_dssp TT--HHHHHHHHT----------HHHHHHHHTTT-----HHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHC--------cCHHHHHHHHhcccccccHHHHHHHHHHcC
Confidence 7889999999873 4567888899998 688888887776665
No 83
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=33.67 E-value=1.7e+02 Score=27.81 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--C--CHHHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--L--PSHVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--l--pe~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+-++.+++|+ -|+..+.+.|...|.-+.. + ...+.++..+ ..++|...++++|++|.
T Consensus 194 ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH~~n~STfa~RvvaS--t~adlysav~agi~aL~ 263 (419)
T PRK05614 194 LSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHEQNASTSTVRLAGS--SGANPFACIAAGIAALW 263 (419)
T ss_pred cCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccCCCCcchHHHhhhhc--cCCCHHHHHHHHHhhcC
Confidence 47889999999997 7888899999998875542 3 3444555555 56799999999999983
No 84
>PF13946 DUF4214: Domain of unknown function (DUF4214)
Probab=33.01 E-value=1.2e+02 Score=21.57 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRA 144 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~ 144 (203)
.|.+.+|..+.|+-|+.+.++-|...|..-.
T Consensus 23 ~fV~~lY~~~LgR~~D~~Gl~yw~~~L~~G~ 53 (75)
T PF13946_consen 23 AFVNSLYQNILGREPDPEGLAYWLNQLNSGA 53 (75)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 5788899999999999999999999998654
No 85
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=32.00 E-value=87 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHhhcCCC
Q psy14238 115 PEGLFWLLVTGD-VPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 115 fEev~yLLl~Ge-LPt~~el~~f~~~L~~~~~lp 147 (203)
-|-|-||+=+++ +-+.+|...+-+.|.+++.+.
T Consensus 33 sdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~ 66 (84)
T cd04438 33 SDLVDWLLSHVEGLTDRREARKYASSLLKLGYIR 66 (84)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 477999999886 789999999999999887543
No 86
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.84 E-value=98 Score=26.88 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc-----------CCCHHHHHHHhcCCCC------CCHHHHHHHHHHHhC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRA-----------ELPSHVVTMLNNFPNH------LHPMSQFSAAITALN 175 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~-----------~lpe~v~~~i~~~P~~------aHPM~~L~~~vsaL~ 175 (203)
.-||.+=.|+ -.||+..|...+-++++.-+ ..|+....++..+|-+ -|-|+.+.++|++|.
T Consensus 84 emee~~~~ll-rQLPs~tEmp~Ll~dv~q~Gl~sgL~fd~~~p~~~v~k~fy~elPisi~v~G~YHdia~F~~~VasLp 161 (211)
T COG3167 84 EMEERFDILL-RQLPSDTEMPNLLADVNQAGLSSGLTFDLFMPQPEVDKEFYAELPISISVTGSYHDIAQFVSDVASLP 161 (211)
T ss_pred HHHHHHHHHH-HhCCcccchhHHHHHHHHhhhccCceeeccCCCchhhhhhHhhcceEEEEcccHHHHHHHHHHHhhcc
Confidence 3466555555 47999999999999988632 3567788999999954 499999999999986
No 87
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=29.04 E-value=1.5e+02 Score=26.05 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=39.7
Q ss_pred ccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCC
Q psy14238 95 LSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD--VPSEAQVQALSKSWASRAELPSHVVTMLNNFP 158 (203)
Q Consensus 95 y~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge--LPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P 158 (203)
..|.+|++.. ..=+...+.+|+ ||++++..++--+|.+...+=+...++...-.
T Consensus 84 ~~i~~L~~~v----------v~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~ 139 (237)
T PF08427_consen 84 PDIFQLAEQV----------VNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSS 139 (237)
T ss_pred cChHHHHHHH----------HHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhcc
Confidence 5677777763 445677888999 89999999999999887765555555555544
No 88
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=28.88 E-value=82 Score=21.61 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHH--hCCCCCHHHHHHHHHHHHhhcCC
Q psy14238 116 EGLFWLLV--TGDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 116 Eev~yLLl--~GeLPt~~el~~f~~~L~~~~~l 146 (203)
|-|-||+= .|...+.+|...+-++|.++..+
T Consensus 22 e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g~i 54 (74)
T PF00610_consen 22 EAVDWLMDNFEGFVRDREEAVQLGQELLDHGFI 54 (74)
T ss_dssp HHHHHHHHTSCTSTSSHHHHHHHHHHHHHCTSE
T ss_pred HHHHHHHHhccccccCHHHHHHHHHHHHHCCCE
Confidence 56888884 67799999999999999987753
No 89
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=27.62 E-value=2.5e+02 Score=26.29 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.++-+-+.-+++|+ .|++++.+.|...|.-+.. +... ..+++-+ ..++|...+++++++|.
T Consensus 161 ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST~aaRv~aS--t~ad~~s~v~aai~al~ 230 (382)
T cd06107 161 LSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHEMNCSTSAARHTGS--SLADPISCMAAAIAALY 230 (382)
T ss_pred CCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccCCcchhHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence 36777777788887 5999999999999875542 3333 3333333 56789999999998875
No 90
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.57 E-value=1.2e+02 Score=23.04 Aligned_cols=62 Identities=18% Similarity=0.425 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC-CCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRAE-LPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~-lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~ 177 (203)
.+-.++|+++.....+.++.+...+.+..+.. +. .+..-++.+| +.+-+..|...++-+..+
T Consensus 18 ~~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~-~lE~~l~~LP-t~~dv~~L~l~l~el~G~ 80 (106)
T PF10805_consen 18 IAGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQ-ALETKLEHLP-TRDDVHDLQLELAELRGE 80 (106)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HHHHHHHhCC-CHHHHHHHHHHHHHHHhH
Confidence 34578888899988889999999888876543 33 5778899999 667777777777666543
No 91
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=27.52 E-value=1e+02 Score=22.51 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=35.7
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
+|+-..++.|.- .-|-|-||+=.|.+.+.+|.-.+-+.|.+.+.+.
T Consensus 19 ~~~~~~~~~cF~-----------GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~i~ 64 (81)
T cd04439 19 RRKLSTFPKCFL-----------GNEFVSWLLEIGEISKPEEGVNLGQALLENGIIH 64 (81)
T ss_pred EECcEEcCceeE-----------hHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEE
Confidence 455555555542 3478999999999999999999999999887654
No 92
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=26.57 E-value=1.2e+02 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
..|-|-||+=+|++.|.+|.-.+-+.|-+...+.
T Consensus 35 GsElVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~ 68 (85)
T cd04441 35 GSEFIDWLLQEGEAESRREAVQLCRRLLEHGIIQ 68 (85)
T ss_pred chHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4588999999999999999999999998877554
No 93
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=26.42 E-value=82 Score=27.66 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=23.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
..-+-+||...+.-||.+|++.+.+-|.
T Consensus 238 ~~I~~lyl~~LsR~Pt~~E~~~~~~~l~ 265 (266)
T PF07587_consen 238 ERIEELYLRALSRPPTAAELAAAREFLQ 265 (266)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999877664
No 94
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=25.55 E-value=1.3e+02 Score=20.68 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.-|-|-||+-.+...+.+|...+-+.|.+.+.|.
T Consensus 23 G~e~v~wL~~~~~~~~r~eA~~l~~~ll~~g~i~ 56 (77)
T smart00049 23 GSELVDWLMDNLEIIDREEAVHLGQLLLDEGLIH 56 (77)
T ss_pred cHHHHHHHHHcCCcCCHHHHHHHHHHHHHCCCEE
Confidence 4578999999999999999999999998887543
No 95
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=1.2e+02 Score=24.86 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.6
Q ss_pred ccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 72 RGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 72 rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
.||.+-+|=.+..+.+ |+ .|.|++=.-+... .-.++.=++.|+ |.+|+..|.-
T Consensus 54 ~GC~S~vwL~~~~~~~-~~~~F~gdSdA~ivrG-----------L~aill~~~~G~--t~~eI~~~~~ 107 (144)
T COG2166 54 PGCQSQVWLVTEQNDD-GTLHFFGDSDARIVRG-----------LLAILLAAYSGK--TAAEILAFDP 107 (144)
T ss_pred CccccceeEEEeecCC-ceEEEeccchhHHHHH-----------HHHHHHHHHcCC--CHHHHHcCCH
Confidence 3898888866655533 76 9999998777764 356666667888 5677766644
No 96
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.30 E-value=2.2e+02 Score=22.87 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHh
Q psy14238 46 RVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVT 124 (203)
Q Consensus 46 ~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~ 124 (203)
.++++.+..+.-.-...|-+.- ..||.+-+|=...+|. +|. +|+|++=..+.+. +-.+.--++.
T Consensus 26 ~LI~lgk~Lp~lpe~~r~~~~~---V~GCqS~VWl~~~~~~-~g~~~f~~dSDa~ivkG-----------l~alL~~~~~ 90 (138)
T PRK09296 26 YIIELGQRLPPLTDEDRSPQNL---IQGCQSQVWIVMRQNA-QGIIELQGDSDAAIVKG-----------LIAVVFILYQ 90 (138)
T ss_pred HHHHHHhhCCCCCHHHcCcccc---CCCcccceeeeEeecC-CCEEEEEEecccHHHHH-----------HHHHHHHHHc
Confidence 4667766655543222222222 3499998886555664 466 9999985555543 4566666677
Q ss_pred CCCCCHHHHHHHH
Q psy14238 125 GDVPSEAQVQALS 137 (203)
Q Consensus 125 GeLPt~~el~~f~ 137 (203)
|. |.+|...|.
T Consensus 91 g~--tp~eIl~~d 101 (138)
T PRK09296 91 QM--TPQDIVNFD 101 (138)
T ss_pred CC--CHHHHHhCC
Confidence 87 457766654
No 97
>KOG2384|consensus
Probab=23.01 E-value=67 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhC-CCCCHHHHHHH-HHHHHhhcCCCHHHHHHHhcCCCCCCHHH
Q psy14238 114 LPEGLFWLLVTG-DVPSEAQVQAL-SKSWASRAELPSHVVTMLNNFPNHLHPMS 165 (203)
Q Consensus 114 ~fEev~yLLl~G-eLPt~~el~~f-~~~L~~~~~lpe~v~~~i~~~P~~aHPM~ 165 (203)
++|.|.|||=.| -.|...+.... ...|.+...-++.+..+++.+-.+.|||+
T Consensus 24 ~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 24 SNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred chhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 677788887777 33433322222 23445555555566666666666777765
No 98
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.42 E-value=1.9e+02 Score=22.71 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHH
Q psy14238 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHV 150 (203)
Q Consensus 116 Eev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v 150 (203)
|-|=||+=.+...+..|.-.+-+.|.++..+..-.
T Consensus 36 e~VDWLv~~~~~i~R~EAv~l~q~Lmd~gli~hV~ 70 (109)
T cd04444 36 ALVDWLISNSFAASRLEAVTLASMLMEENFLRPVG 70 (109)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCchhhHH
Confidence 56789999999999999999999999988765333
No 99
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.60 E-value=2.2e+02 Score=17.90 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=29.0
Q ss_pred cCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Q psy14238 93 RGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWA 141 (203)
Q Consensus 93 RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~ 141 (203)
+|++..||++... .-...++=+..|+ .|+.+.+..+...+.
T Consensus 8 ~gls~~~la~~~g--------is~~~i~~~~~g~~~~~~~~~~~ia~~l~ 49 (55)
T PF01381_consen 8 KGLSQKELAEKLG--------ISRSTISRIENGKRNPSLDTLKKIAKALG 49 (55)
T ss_dssp TTS-HHHHHHHHT--------S-HHHHHHHHTTSSTSBHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhC--------CCcchhHHHhcCCCCCCHHHHHHHHHHHC
Confidence 5789999999873 3346666677775 699998888876664
No 100
>TIGR03613 RutR pyrimidine utilization regulatory protein R. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).
Probab=21.38 E-value=2e+02 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=10.3
Q ss_pred ecCccHHHHHhhC
Q psy14238 92 FRGLSIPECQKVL 104 (203)
Q Consensus 92 YRGy~I~eLa~~~ 104 (203)
|.|-++.++++.+
T Consensus 26 ~~~~s~~~IA~~a 38 (202)
T TIGR03613 26 FHGTSLEQIAELA 38 (202)
T ss_pred cccCCHHHHHHHh
Confidence 7777888888876
No 101
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=20.89 E-value=1.8e+02 Score=21.39 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=36.1
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
+|+..+.+.|-- .-|-|-||+=+|+..|.+|.-.+-+.|.+.+.+.
T Consensus 19 ~~~~r~y~~cF~-----------GselVdWL~~~~~~~sR~eAv~lgq~Ll~~gvi~ 64 (82)
T cd04442 19 RHHLRTYPNCFV-----------GKELIDWLIEHKEASDRETAIKIMQKLLDHSIIH 64 (82)
T ss_pred EECCEEcCceeE-----------cHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEE
Confidence 555566555543 3588999999999999999999999998877544
No 102
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=20.69 E-value=1.9e+02 Score=21.25 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=35.8
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
+|+..+.+.+-- ..|-|-||+=.|..-|.+|.-.+-+.|.+.+.+.
T Consensus 21 ~~~~~~y~~cF~-----------GselVdWL~~~~~~~sR~eAv~lg~~Ll~~G~i~ 66 (83)
T cd04443 21 RCGLRTYKGVFC-----------GCDLVSWLIEVGLAQDRGEAVLYGRRLLQGGVLQ 66 (83)
T ss_pred eecceecccccc-----------HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCEE
Confidence 555555555532 4578999998899999999999999999887654
No 103
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.54 E-value=6e+02 Score=22.96 Aligned_cols=68 Identities=15% Similarity=0.306 Sum_probs=45.7
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHH-hCCCCCHHHHHHHHHHHHhhc---CC--CHHHHHHHhc-CC---CCC
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLV-TGDVPSEAQVQALSKSWASRA---EL--PSHVVTMLNN-FP---NHL 161 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl-~GeLPt~~el~~f~~~L~~~~---~l--pe~v~~~i~~-~P---~~a 161 (203)
-+|.+..|+.... +.++.+.+|. |||.|.... ....+.+++ .+ ..++.+++.. +| ...
T Consensus 127 ~~~~sA~~~ln~~---------~~~~L~~i~~~yGee~~a~~---iA~~Iv~~R~~~~~~tt~~L~~~i~~~~~~~~~~~ 194 (296)
T PRK00050 127 SQGLTAAEVVNTY---------SEEELARIFKEYGEERFARR---IARAIVEARPKKPITTTGELAEIIKSAVPPRRKGI 194 (296)
T ss_pred CCCCCHHHHHhhC---------CHHHHHHHHHHhcCcchHHH---HHHHHHHHhccCCCCCHHHHHHHHHHHcCccCCCC
Confidence 3578999999987 7899998885 599985544 444554443 33 3567777754 55 356
Q ss_pred CHHHHHHHHH
Q psy14238 162 HPMSQFSAAI 171 (203)
Q Consensus 162 HPM~~L~~~v 171 (203)
||.+..-.|+
T Consensus 195 hpatr~FQAl 204 (296)
T PRK00050 195 HPATRTFQAL 204 (296)
T ss_pred CchHHHHHHH
Confidence 9998654443
No 104
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.24 E-value=1e+02 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhhc
Q psy14238 117 GLFWLLVTGDVPSEAQVQALSKSWASRA 144 (203)
Q Consensus 117 ev~yLLl~GeLPt~~el~~f~~~L~~~~ 144 (203)
.++.-=+++++|+.++++...+.|...+
T Consensus 62 ~~~I~~vt~~~P~~~di~RV~~~Laa~G 89 (96)
T PF11829_consen 62 GVAITRVTDELPTPEDIERVRARLAAAG 89 (96)
T ss_dssp HHHHHHHCSS-S-HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHhCC
Confidence 4455567899999999999999988765
No 105
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=20.17 E-value=63 Score=26.47 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=46.9
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhhc-CCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC---CcHhHHHhhccC---C
Q psy14238 117 GLFWLLVTGDVPSEAQVQALSKSWASRA-ELPSHVVTMLNNFPNHLHPMSQFSAAITALNS---ESKFAKAYNDGV---H 189 (203)
Q Consensus 117 ev~yLLl~GeLPt~~el~~f~~~L~~~~-~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~---~s~f~~~y~~g~---~ 189 (203)
...|+|-+|-+ |.+|.+..++.+.+-- .|-++...++++|- .|=..|.++++.--. +.-|..+...-. .
T Consensus 96 ~~g~fl~~g~l-s~~~~~~l~~~i~~l~~~lrp~av~LVDAF~---~~D~~L~S~iG~~DG~vYe~l~~~a~~~~~n~~~ 171 (187)
T PF01756_consen 96 NAGDFLEHGYL-SPEQIKALRKAIEELCAELRPNAVALVDAFD---FPDFFLNSPIGRYDGDVYEALFEWAKKSPLNQTE 171 (187)
T ss_dssp THHHHHHTTSS--HHHHHHHHHHHHHHHHHHGGGHHHHHHTT------HHHHT-STT-TT--HHHHHHHHHHHSGGGCSS
T ss_pred HHHHHHhCCcC-CHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC---CCHHHHcChhccccchHHHHHHHHHHHCCCCCCC
Confidence 46788999988 8899998888777643 46668888999984 566677775554321 122444443323 3
Q ss_pred cccCccccc
Q psy14238 190 KSKYWEYIQ 198 (203)
Q Consensus 190 k~~yW~~~~ 198 (203)
...||+.++
T Consensus 172 ~~~~~~~~l 180 (187)
T PF01756_consen 172 VPPWWEEYL 180 (187)
T ss_dssp S-TTHHHHT
T ss_pred CCchHHHHH
Confidence 578887654
Done!