Query psy14238
Match_columns 203
No_of_seqs 183 out of 1305
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:56:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 3.6E-45 1.2E-49 338.6 10.7 171 30-200 2-172 (435)
2 3msu_A Citrate synthase; helix 100.0 8.9E-34 3E-38 261.9 10.2 122 40-176 30-152 (427)
3 3l96_A Citrate synthase; quate 100.0 5.4E-34 1.8E-38 263.3 8.1 121 41-176 22-143 (426)
4 2ibp_A Citrate synthase; disul 100.0 2.2E-33 7.6E-38 258.1 7.8 137 53-200 9-150 (409)
5 2h12_A Citrate synthase; acido 100.0 1.5E-32 5.1E-37 254.3 8.1 122 41-176 29-151 (436)
6 3hwk_A Methylcitrate synthase; 100.0 8.4E-32 2.9E-36 247.9 9.3 124 46-178 25-152 (414)
7 3tqg_A 2-methylcitrate synthas 100.0 7.1E-32 2.4E-36 245.7 7.9 105 60-176 3-108 (375)
8 1vgm_A 378AA long hypothetical 100.0 2.1E-29 7.1E-34 229.6 9.6 103 62-176 3-106 (378)
9 1iom_A Citrate synthase; open 100.0 2.3E-29 7.7E-34 229.3 9.4 103 62-176 1-104 (377)
10 3o8j_A 2-methylcitrate synthas 100.0 4.1E-29 1.4E-33 229.4 10.7 102 63-176 32-134 (404)
11 1a59_A Citrate synthase; cold- 100.0 3.4E-29 1.2E-33 228.1 9.0 101 64-176 5-106 (378)
12 1aj8_A Citrate synthase; hyper 100.0 8.1E-29 2.8E-33 225.2 9.7 99 69-176 3-102 (371)
13 2ifc_A Citrate synthase; oxalo 100.0 9.7E-29 3.3E-33 225.6 10.1 116 64-200 7-124 (385)
14 1o7x_A Citrate synthase; lyase 100.0 1.5E-28 5.1E-33 223.9 11.0 103 62-176 2-105 (377)
15 2c6x_A Citrate synthase 1; tri 99.9 5.1E-28 1.8E-32 219.4 12.5 99 69-176 3-102 (363)
16 1vgp_A 373AA long hypothetical 99.9 5E-28 1.7E-32 220.1 11.4 101 64-176 3-104 (373)
17 2p2w_A Citrate synthase; trans 99.9 7.1E-28 2.4E-32 218.8 11.1 100 69-177 4-104 (367)
18 1a59_A Citrate synthase; cold- 87.8 1.3 4.5E-05 39.8 7.3 60 113-174 153-216 (378)
19 3tqg_A 2-methylcitrate synthas 86.3 3.4 0.00011 37.3 9.1 61 113-175 153-217 (375)
20 1aj8_A Citrate synthase; hyper 86.3 3.2 0.00011 37.3 9.0 60 113-174 150-213 (371)
21 2ifc_A Citrate synthase; oxalo 86.1 1.5 5.2E-05 39.6 6.8 60 113-174 155-218 (385)
22 1iom_A Citrate synthase; open 86.1 3.3 0.00011 37.2 9.0 60 113-174 151-214 (377)
23 1vgp_A 373AA long hypothetical 85.2 3.7 0.00013 36.9 8.8 60 113-174 147-210 (373)
24 2ibp_A Citrate synthase; disul 85.1 3.8 0.00013 37.3 8.9 60 113-174 181-244 (409)
25 1vgm_A 378AA long hypothetical 84.9 1.9 6.4E-05 38.9 6.8 61 113-175 151-215 (378)
26 3hwk_A Methylcitrate synthase; 83.8 2.4 8.3E-05 38.8 7.1 61 113-175 195-259 (414)
27 2c6x_A Citrate synthase 1; tri 81.8 2.5 8.5E-05 37.9 6.2 59 114-174 145-207 (363)
28 3o8j_A 2-methylcitrate synthas 81.7 5.7 0.0002 36.1 8.7 62 112-175 181-246 (404)
29 1o7x_A Citrate synthase; lyase 78.8 3.4 0.00012 37.2 6.1 61 113-175 150-214 (377)
30 3u5c_P 40S ribosomal protein S 64.0 3.1 0.00011 32.9 2.0 23 90-122 15-37 (142)
31 1wg8_A Predicted S-adenosylmet 60.3 49 0.0017 28.6 9.1 98 54-167 85-197 (285)
32 3j20_T 30S ribosomal protein S 60.0 3.1 0.0001 32.6 1.2 22 91-122 7-28 (132)
33 2xzm_S RPS15E; ribosome, trans 55.9 3.9 0.00013 32.4 1.2 32 90-122 11-42 (144)
34 3msu_A Citrate synthase; helix 51.4 36 0.0012 31.1 7.0 61 113-175 197-265 (427)
35 3iz6_R 40S ribosomal protein S 48.2 3.8 0.00013 32.8 0.0 36 90-141 24-59 (154)
36 3l96_A Citrate synthase; quate 47.4 29 0.001 31.7 5.8 61 112-174 190-259 (426)
37 1uhw_A Pleckstrin; three-helix 45.2 14 0.00047 27.7 2.7 53 84-147 16-73 (109)
38 2qsr_A Transcription-repair co 37.8 33 0.0011 27.2 4.1 31 126-156 39-70 (173)
39 2h12_A Citrate synthase; acido 37.5 1.3E+02 0.0044 27.4 8.5 60 113-174 199-267 (436)
40 3t76_A VANU, transcriptional r 37.1 56 0.0019 22.7 4.8 43 91-141 34-76 (88)
41 3omt_A Uncharacterized protein 36.9 69 0.0024 20.3 5.0 43 91-141 18-61 (73)
42 1csh_A Citrate synthase; lyase 29.1 2E+02 0.0069 26.1 8.3 59 113-175 205-268 (435)
43 2xi8_A Putative transcription 29.0 82 0.0028 19.1 4.2 41 92-140 12-53 (66)
44 3b7h_A Prophage LP1 protein 11 28.7 97 0.0033 19.6 4.7 42 92-141 18-61 (78)
45 2ga1_A Protein of unknown func 24.3 30 0.001 25.7 1.5 57 60-124 32-88 (106)
46 2cso_A Pleckstrin; DEP domain, 23.9 46 0.0016 25.4 2.6 31 116-146 52-82 (127)
47 3tka_A Ribosomal RNA small sub 23.5 3.2E+02 0.011 24.2 8.3 67 93-168 166-239 (347)
48 2b5a_A C.BCLI; helix-turn-heli 22.6 1.1E+02 0.0038 19.2 4.0 41 92-140 21-62 (77)
49 3qq6_A HTH-type transcriptiona 22.6 1.4E+02 0.0047 19.5 4.6 42 92-141 21-64 (78)
50 3loc_A HTH-type transcriptiona 22.2 88 0.003 22.9 3.9 63 92-171 36-98 (212)
51 2ysr_A DEP domain-containing p 22.0 1.3E+02 0.0044 21.8 4.7 32 115-146 44-82 (105)
52 3g0m_A Cysteine desulfuration 21.8 1.6E+02 0.0054 22.6 5.3 94 28-137 9-104 (141)
53 3f6w_A XRE-family like protein 20.7 1.5E+02 0.0052 19.0 4.5 42 92-141 25-67 (83)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=3.6e-45 Score=338.56 Aligned_cols=171 Identities=70% Similarity=1.201 Sum_probs=165.5
Q ss_pred hhHHHHHHhhCcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCC
Q psy14238 30 TDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKG 109 (203)
Q Consensus 30 ~~lk~~~~~~ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~ 109 (203)
++||++|+++||.++++++.+++.||+++||.+|+||.++|++|+.++.|+||+|||++||+||||+|+||++++||.++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCC
Q psy14238 110 GEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVH 189 (203)
Q Consensus 110 ~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~ 189 (203)
+.+++||||+||||+|+|||++|+++|+++|..++.+|+.+.++|++||+++|||++|+++|++|++.++|+.+|+.+.+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCC
Q psy14238 190 KSKYWEYIQQP 200 (203)
Q Consensus 190 k~~yW~~~~eD 200 (203)
+.+||++.+++
T Consensus 162 ~~~~~~~~~~~ 172 (435)
T 1csh_A 162 RTKYWEFVYED 172 (435)
T ss_dssp GGGHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99999988775
No 2
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=8.9e-34 Score=261.87 Aligned_cols=122 Identities=22% Similarity=0.348 Sum_probs=115.0
Q ss_pred CcccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHH
Q psy14238 40 IPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGL 118 (203)
Q Consensus 40 ip~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev 118 (203)
.++.++.++||+++++ + |.+|+||||.|+..| .|+||+|||++|+ +||||+|+||++++ +||||
T Consensus 30 ~~~~g~~~~d~~~l~~-~--G~~t~d~Gl~~~~~~---~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feev 94 (427)
T 3msu_A 30 SPSLGNDCIDVSSLVK-H--GIFTYDPGFMSTAAC---ESKITYIDGGKGVLLHRGYPIEEWTQKS---------NYRTL 94 (427)
T ss_dssp CCSSSCEEEECGGGGG-G--TEEEECTTCTTEEEE---EESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHH
T ss_pred eCCCCCceeeeHhhhh-C--CCEeeCCCcCCceEE---EEEeeEEeCCCCEEEECCeEHHHHhccC---------CHHHH
Confidence 3578889999999998 6 999999999977776 6699999999998 99999999999987 99999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 119 FWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 119 ~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
+||||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|++
T Consensus 95 ayLLl~G~LPt~~el~~f~~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~ 152 (427)
T 3msu_A 95 CYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAA 152 (427)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999963
No 3
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=5.4e-34 Score=263.27 Aligned_cols=121 Identities=18% Similarity=0.303 Sum_probs=114.6
Q ss_pred cccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHH
Q psy14238 41 PSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLF 119 (203)
Q Consensus 41 p~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~ 119 (203)
++.++.++||+++++ + |.+|+||||.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+
T Consensus 22 ~~~~~~~~d~~~l~~-~--g~~~~d~Gl~~~~~~---~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feeva 86 (426)
T 3l96_A 22 GTLGQDVIDIRTLGS-K--GVFTFDPGFTSTTSC---ESKITFIDGDEGILLHRGFPIDQLATDS---------NYLEVC 86 (426)
T ss_dssp CSSSCCEEECTTHHH-H--TCCEECTTSSSEEEE---EESSEEEEGGGTEEEETTEEHHHHHHHS---------CHHHHH
T ss_pred CCCCCceeeeeeccc-C--CcEEeCCCCCCceEE---eEEeEEEECCCCEEEECCeEHHHHHhcC---------CHHHHH
Confidence 577889999999998 5 999999999977776 6699999999998 99999999999997 999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 120 yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
||||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|++
T Consensus 87 yLLl~G~LPt~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~ 143 (426)
T 3l96_A 87 YILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAA 143 (426)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGG
T ss_pred HHHHCCcCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999974
No 4
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=99.98 E-value=2.2e-33 Score=258.06 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=123.8
Q ss_pred hhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH
Q psy14238 53 NYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEA 131 (203)
Q Consensus 53 ~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~ 131 (203)
.|+.++++.+|++ ...|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS---------TYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHH
Confidence 5677777777665 446667887889999999999996 99999999999997 999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhH----HHhhccCCcccCcccccCC
Q psy14238 132 QVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFA----KAYNDGVHKSKYWEYIQQP 200 (203)
Q Consensus 132 el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~----~~y~~g~~k~~yW~~~~eD 200 (203)
|+++|+++|..++.+|+.+.++|++||++ |||++|+++|++|++.+.++ ++|++|++|+++|++.+++
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~ 150 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRI 150 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHH
Confidence 99999999999999999999999999999 99999999999999877765 7899999999999987765
No 5
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=99.97 E-value=1.5e-32 Score=254.30 Aligned_cols=122 Identities=23% Similarity=0.401 Sum_probs=114.5
Q ss_pred cccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHH
Q psy14238 41 PSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLF 119 (203)
Q Consensus 41 p~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~ 119 (203)
++.++.++||+++++++ |.+|+|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+
T Consensus 29 ~~~~~~~~d~~~l~~~~--g~~t~~~Gl~g~~~~---~S~Is~idg~~G~L~YRGy~I~dLa~~~---------~feEva 94 (436)
T 2h12_A 29 GTLGPDVIDIRKLPAQL--GVFTFDPGYGETAAC---NSKITFIDGDKGVLLHRGYPIAQLAENA---------SYEEVI 94 (436)
T ss_dssp CSBSCCEEECTTHHHHH--SCEEECTTCTTEEEE---EESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHH
T ss_pred CCCCCceeeehhhcccC--CcEeeCCccCCCeee---eeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHH
Confidence 56788889999999888 999999888866655 7799999999999 99999999999997 999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 120 yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
||||+|+|||++|++.|+++|..++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 95 yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~ 151 (436)
T 2h12_A 95 YLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSA 151 (436)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGG
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999975
No 6
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=99.97 E-value=8.4e-32 Score=247.88 Aligned_cols=124 Identities=21% Similarity=0.351 Sum_probs=97.9
Q ss_pred HHHHHHHhhCCcccceEEecc---cCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHH
Q psy14238 46 RVKNFRKNYGSTKVGEVTVDM---MYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWL 121 (203)
Q Consensus 46 ~~~di~~~~~~~~ig~~T~d~---g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yL 121 (203)
..+..++.||.++++..|+|. ...|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~~---------~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARC---------SFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHH
Confidence 456778999999999999998 457889999999999999999996 99999999999997 99999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCc
Q psy14238 122 LVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSES 178 (203)
Q Consensus 122 Ll~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s 178 (203)
||+|+|||++|+++|+++|..++.||+++.++|++||+++|||++|+++|++|++.+
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~ 152 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAED 152 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999997543
No 7
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=99.97 E-value=7.1e-32 Score=245.71 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=88.1
Q ss_pred ceEEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q psy14238 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSK 138 (203)
Q Consensus 60 g~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~ 138 (203)
|.+|+|||+.|+..| .|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|++
T Consensus 3 ~~~~~~~Gl~gv~~~---~t~Is~idg~~g~L~YRGy~I~dLa~~~---------~feev~yLLl~G~lPt~~el~~f~~ 70 (375)
T 3tqg_A 3 AMTKTAKGLRGQSAG---ETSIATVGKEGHGLTYRGYRIEDLAANA---------TFEEVAYLLLKNKLPTKSELDAYTK 70 (375)
T ss_dssp -------------CC---EESSEEECTTSCCEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCcccCCccCCCeEe---eeeceEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCcCHHHHHHHHH
Confidence 789999999966665 7799999999886 99999999999997 9999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 139 SWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 139 ~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
+|.+++.||+++.++|++||+++|||++|+++|++|++
T Consensus 71 ~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~ 108 (375)
T 3tqg_A 71 KLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGN 108 (375)
T ss_dssp HHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999975
No 8
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=99.96 E-value=2.1e-29 Score=229.58 Aligned_cols=103 Identities=21% Similarity=0.339 Sum_probs=96.5
Q ss_pred EEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L 140 (203)
+|||+|+. |+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|
T Consensus 3 ~~~~~Gl~---gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l 70 (378)
T 1vgm_A 3 VEVSRGLE---NVIIKTTGLTYIDGINGILRYRGYDINDLVNYA---------SYEELIHLMLYGELPNRQQLNQIKGII 70 (378)
T ss_dssp CCCSGGGT---TCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred cccCCccC---CCeeeeeeceEEECCCCeEEEcCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 57897777 555568899999999996 99999999999997 999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 141 ~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
..++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 71 ~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 106 (378)
T 1vgm_A 71 NESFEVPEQVISTIFSMPRNCDAIGMMETAFGILAS 106 (378)
T ss_dssp HTCCCCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999976
No 9
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=99.96 E-value=2.3e-29 Score=229.27 Aligned_cols=103 Identities=23% Similarity=0.396 Sum_probs=94.6
Q ss_pred EEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L 140 (203)
+++|+|+.|+. ++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|
T Consensus 1 ~~~~~Gl~gv~---~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l 68 (377)
T 1iom_A 1 MEVARGLEGVL---FTESRMCYIDGQQGKLYYYGIPIQELAEKS---------SFEETTFLLLHGRLPRRQELEEFSAAL 68 (377)
T ss_dssp --CCGGGTTCC---CSCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred CCCCcccCCCe---eeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHH
Confidence 36787777554 557799999999996 99999999999997 999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 141 ~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
..++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 69 ~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 104 (377)
T 1iom_A 69 ARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGM 104 (377)
T ss_dssp HHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHhCCcCCCchhHHHHHHHHHhc
Confidence 999999999999999999999999999999999976
No 10
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=99.96 E-value=4.1e-29 Score=229.39 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=87.4
Q ss_pred EecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 63 TVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 63 T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
.+|||+.|+.. ..|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|.
T Consensus 32 ~~~~Gl~gv~~---~~T~Is~idg~~g~L~YRGy~I~dLa~~~---------~fEevayLLl~G~LPt~~el~~f~~~l~ 99 (404)
T 3o8j_A 32 KKSVALSGVPA---GNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLIHGKLPTRDELNAYKSKLK 99 (404)
T ss_dssp ---------CC---CEESSEEECC-CCCEEETTEEHHHHHHHC---------CHHHHHHHHHTSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCceE---eeeeceeeeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 47777775555 47799999999887 99999999999997 9999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 142 SRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 142 ~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
.++.||+++.++|++||+++|||++|+++|++|++
T Consensus 100 ~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~ 134 (404)
T 3o8j_A 100 ALRGLPANVRTVLEALPAASHPMDVMRTGVSALGC 134 (404)
T ss_dssp TTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999864
No 11
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=99.95 E-value=3.4e-29 Score=228.07 Aligned_cols=101 Identities=19% Similarity=0.307 Sum_probs=94.2
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS 142 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~ 142 (203)
+|+|+. |+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..
T Consensus 5 ~~~Gl~---gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~ 72 (378)
T 1a59_A 5 IHKGLA---GVTADVTAISKVNSDTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERS 72 (378)
T ss_dssp CCGGGT---TCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred CCCccC---CCeeeeeeceEEECCCCeEEEcCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666655 555668899999999996 99999999999997 99999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 143 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 143 ~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 73 ~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 106 (378)
T 1a59_A 73 HRKLDENVKGAIDLLSTACHPMDVARTAVSVLGA 106 (378)
T ss_dssp SCSCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999976
No 12
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=99.95 E-value=8.1e-29 Score=225.21 Aligned_cols=99 Identities=25% Similarity=0.446 Sum_probs=94.3
Q ss_pred cccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 69 GGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 69 ~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 3 ~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~lp 73 (371)
T 1aj8_A 3 KGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRGLP 73 (371)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 4667887889999999999996 99999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 148 SHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 148 e~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
+.+.++|++||+++|||++|+++|++|++
T Consensus 74 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 102 (371)
T 1aj8_A 74 KEVIEIMEALPKNTHPMGALRTIISYLGN 102 (371)
T ss_dssp HHHHHHHHHSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhc
Confidence 99999999999999999999999999976
No 13
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=99.95 E-value=9.7e-29 Score=225.63 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=101.4
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQK-VLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~-~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
+|+|+. |+.++.|+||+|||++|+ +||||+|+||++ ++ +||||+||||+|+|||++|+++|+++|.
T Consensus 7 ~~~Gl~---g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~ 74 (385)
T 2ifc_A 7 ISKGLE---DVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGA---------QDEEIQYLFLYGNLPTEQELRKYKETVQ 74 (385)
T ss_dssp BCGGGT---TCEEEEESSEEEETTTTEEEETTEEHHHHHHTTC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred CCCCcC---CCeeeeeeCeEEECCCCEEEECCccHHHHHhcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHH
Confidence 666655 666668899999999996 999999999999 76 9999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCCCcHhHHHhhccCCcccCcccccCC
Q psy14238 142 SRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQP 200 (203)
Q Consensus 142 ~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~~s~f~~~y~~g~~k~~yW~~~~eD 200 (203)
.++.+|+.+.++|++||+++|||++|+++|++|++ | |.++ +++|++.+++
T Consensus 75 ~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~---~---~~~~---~~~~~~~~~~ 124 (385)
T 2ifc_A 75 KGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAA---S---ETKF---KWNKDTDRDV 124 (385)
T ss_dssp GGGCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHH---H---CTTC---CCCTTTHHHH
T ss_pred HccCCCHHHHHHHHhCCCCCCchHHHHHHHHHHHh---c---CCcc---cCCHHHHHHH
Confidence 99999999999999999999999999999999986 2 3333 1467766543
No 14
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=99.95 E-value=1.5e-28 Score=223.88 Aligned_cols=103 Identities=21% Similarity=0.353 Sum_probs=95.8
Q ss_pred EEecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy14238 62 VTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSW 140 (203)
Q Consensus 62 ~T~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L 140 (203)
+|||+|+. |+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|
T Consensus 2 ~~~~~Gl~---gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LL~~G~lPt~~el~~f~~~l 69 (377)
T 1o7x_A 2 SVVSKGLE---NVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGKLPTKKELNDLKAKL 69 (377)
T ss_dssp -CBCGGGT---TCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred CCCCcccC---CCeeeeeeCeEEECCCCEEEECCccHHHHHcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHH
Confidence 57887776 555568899999999996 99999999999997 999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 141 ASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 141 ~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
..++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 70 ~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 105 (377)
T 1o7x_A 70 NEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALAS 105 (377)
T ss_dssp HTCCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHhCcccCCcHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999975
No 15
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=99.95 E-value=5.1e-28 Score=219.44 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=94.6
Q ss_pred cccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 69 GGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 69 ~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 3 ~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp 73 (363)
T 2c6x_A 3 YGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNH---------SFEEAAYLILFGKLPSTEELQVFKDKLAAERNLP 73 (363)
T ss_dssp GGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSCC
T ss_pred CcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCCC
Confidence 4667777889999999999996 99999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 148 SHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 148 e~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
+.+.++|++||+++|||++|+++|++|++
T Consensus 74 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 102 (363)
T 2c6x_A 74 EHIERLIQSLPNNMDDMSVLRTVVSALGE 102 (363)
T ss_dssp HHHHHHHHHSCSSSCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCcccCCchHHHHHHHHhhcC
Confidence 99999999999999999999999999987
No 16
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=99.95 E-value=5e-28 Score=220.13 Aligned_cols=101 Identities=19% Similarity=0.311 Sum_probs=94.0
Q ss_pred ecccCcccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q psy14238 64 VDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWAS 142 (203)
Q Consensus 64 ~d~g~~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~ 142 (203)
+|+|+. |+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..
T Consensus 3 ~~~Gl~---g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~ 70 (373)
T 1vgp_A 3 IKKGLE---DVYVKETEITYIDGELGRLYYRGYSIYDLAEFS---------NFEEVSYLILYGKLPNREELNWFQEKLRE 70 (373)
T ss_dssp CCTTCT---TCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHH
T ss_pred CCCccC---CCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Confidence 566666 555568899999999996 99999999999997 99999999999999999999999999999
Q ss_pred hcCCCHHHHHHHhcCCCCCCHHHHHHHHHHHhCC
Q psy14238 143 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176 (203)
Q Consensus 143 ~~~lpe~v~~~i~~~P~~aHPM~~L~~~vsaL~~ 176 (203)
++.+|+.+.++|++||+++|||++|+++|++|++
T Consensus 71 ~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~ 104 (373)
T 1vgp_A 71 ERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGI 104 (373)
T ss_dssp TCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999976
No 17
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=99.95 E-value=7.1e-28 Score=218.75 Aligned_cols=100 Identities=22% Similarity=0.389 Sum_probs=92.7
Q ss_pred cccccccceeeeeceecCCCCe-eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 69 GGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 69 ~g~rg~~~~~t~iS~IDg~~GI-~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.|++|+.++.|+||+|||++|+ +||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 4 ~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LLl~G~lPt~~el~~f~~~l~~~~~lp 74 (367)
T 2p2w_A 4 KGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKS---------TFEETAYFLWYGKLPTKSELEEFKRKMADYRELP 74 (367)
T ss_dssp TTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCCC
T ss_pred CcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcCC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 5666777778999999999996 99999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhCCC
Q psy14238 148 SHVVTMLNNFPNHLHPMSQFSAAITALNSE 177 (203)
Q Consensus 148 e~v~~~i~~~P~~aHPM~~L~~~vsaL~~~ 177 (203)
+.+.++|++||+++|||++|+++|++|++.
T Consensus 75 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~ 104 (367)
T 2p2w_A 75 AEALGILYHLPKNLHYIDVLKIFLSIHGSM 104 (367)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHSCC---
T ss_pred HHHHHHHHhCccCCChHHHHHHHHHHHhcc
Confidence 999999999999999999999999999864
No 18
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=87.76 E-value=1.3 Score=39.83 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.+++|++|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-..++++|++|
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 216 (378)
T 1a59_A 153 LDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITS--TLADLHSAVTGAIGAL 216 (378)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 389999999999999999999999999986652 4443 3444444 4689999999999998
No 19
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=86.34 E-value=3.4 Score=37.27 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. ... ...++..+ ..++|-..+++++++|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaS--t~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSA--TLSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHc--cCCCHHHHHHHHHHhcc
Confidence 589999999999999999999999999876542 444 34455554 56899999999999983
No 20
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=86.29 E-value=3.2 Score=37.26 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-..++++|++|
T Consensus 150 ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL 213 (371)
T 1aj8_A 150 LSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGS--TLSDYYSAILAGIGAL 213 (371)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 479999999999999999999999999986652 4444 3444444 5689999999999998
No 21
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=86.12 E-value=1.5 Score=39.60 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHHH--HHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSHV--VTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~v--~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +...+ .+++-+ ..++|-..++++|++|
T Consensus 155 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 218 (385)
T 2ifc_A 155 DSYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVS--TLSDMYSGITAALAAL 218 (385)
T ss_dssp SCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHh--cCCcHHHHHHHHHHHc
Confidence 389999999999999999999999999986652 45443 444444 5679999999999998
No 22
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=86.08 E-value=3.3 Score=37.24 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-..++++|++|
T Consensus 151 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL 214 (377)
T 1iom_A 151 LSHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFS--TETDLYSAITAAVASL 214 (377)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 489999999999999999999999999986652 4444 3444444 4689999999999998
No 23
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=85.21 E-value=3.7 Score=36.87 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-..++++|++|
T Consensus 147 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~aL 210 (373)
T 1vgp_A 147 LSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVAS--TFSDLYSSIVAGISAL 210 (373)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCccHHHHHHHHHHhc
Confidence 379999999999999999999999999986552 4443 3444444 4689999999999999
No 24
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=85.08 E-value=3.8 Score=37.30 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-..++++|++|
T Consensus 181 ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aS--t~ad~~savaagi~aL 244 (409)
T 2ibp_A 181 LGHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVAS--TLSDLYSSVAAAIAAL 244 (409)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 379999999999999999999999999986552 4444 3444444 4689999999999999
No 25
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=84.89 E-value=1.9 Score=38.87 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHHH--HHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSHV--VTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~v--~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.++++|+|+.|++.+.+.|...|.-+.. +...+ .+++-+ ..++|-..++++|++|.
T Consensus 151 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 151 ESYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASS--TLSDMYSCIVAALAALK 215 (378)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 489999999999999999999999999986552 45443 444444 46799999999999983
No 26
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=83.84 E-value=2.4 Score=38.76 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
-+|-+.++.+|+|+.|++.+.+.|...|.-+.. +.. ...++..+ ..++|-..+++++++|.
T Consensus 195 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~ 259 (414)
T 3hwk_A 195 LGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALK 259 (414)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhc
Confidence 489999999999999999999999999876542 444 34455554 46789999999999983
No 27
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=81.77 E-value=2.5 Score=37.89 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc--CCCHHH--HHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 114 LPEGLFWLLVTGDVPSEAQVQALSKSWASRA--ELPSHV--VTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 114 ~fEev~yLLl~GeLPt~~el~~f~~~L~~~~--~lpe~v--~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
+|-+.++++|+|+.|++.+.+.|...|.-+. .+...+ .+++-+ ..++|-..++++|++|
T Consensus 145 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL 207 (363)
T 2c6x_A 145 GHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNASTFSARVTLS--TESDLVSAVTAALGTM 207 (363)
T ss_dssp CSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh--cCccHHHHHHHHHHHc
Confidence 7889999999999999999999999997554 245443 444444 4679999999999998
No 28
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=81.74 E-value=5.7 Score=36.13 Aligned_cols=62 Identities=23% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 112 EPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 112 ~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.-+|-+.++.+|+|+.|++.+.+.|...|.-+.. +.. ...++..+ ..++|-..+++++++|.
T Consensus 181 ~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaS--t~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 181 DDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAG--TGSDVYSAIIGAIGALR 246 (404)
T ss_dssp CSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHcc
Confidence 3489999999999999999999999999886552 344 34455555 46789999999999983
No 29
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=78.77 E-value=3.4 Score=37.19 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+.+..+|+|+.|++.+.+.|...|.-+.. +... ..+++-+ ..++|-+.++++|++|.
T Consensus 150 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~ad~~savaagi~aL~ 214 (377)
T 1o7x_A 150 DSFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPASTTAALVAAS--TLSDMYSSLTAALAALK 214 (377)
T ss_dssp SCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHH--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHh--cCCcHHHHHHHHHHhcC
Confidence 389999999999999999999999999986552 4443 3444444 45799999999999983
No 30
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=63.97 E-value=3.1 Score=32.92 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.3
Q ss_pred eeecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 90 I~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
..|||++++||.+- +.|+++=|+
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L~ 37 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKLA 37 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHHS
T ss_pred EEEccccHHHHHcC----------CHHHHHHHh
Confidence 38999999999986 788977664
No 31
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=60.35 E-value=49 Score=28.62 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=59.9
Q ss_pred hCCcccceEEecccCccc------ccccceeeeecee-cCCCCeee--cCccHHHHHhhCCCCCCCCCCCHHHHHHHHH-
Q psy14238 54 YGSTKVGEVTVDMMYGGM------RGIKGLVCETSVL-DPEEGIRF--RGLSIPECQKVLPKAKGGEEPLPEGLFWLLV- 123 (203)
Q Consensus 54 ~~~~~ig~~T~d~g~~g~------rg~~~~~t~iS~I-Dg~~GI~Y--RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl- 123 (203)
++...+.-|.+|.|+..+ || -||- ||---.|. .|.+..|+...+ +.++.+..|.
T Consensus 85 ~g~~~vDgIL~DLGvSS~Qld~~~RG-------FSf~~d~pLDMRMd~~~~tA~~~vn~~---------~~~~L~~i~~~ 148 (285)
T 1wg8_A 85 LGVERVDGILADLGVSSFHLDDPSRG-------FSYQKEGPLDMRMGLEGPTAKEVVNRL---------PLEALARLLRE 148 (285)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGGC-------CCSSSCCBSCCCSSSCSCCHHHHHHHS---------CHHHHHHHHHH
T ss_pred cCCCCcCEEEeCCccccccccccccC-------ccccCCCcchhhcCCCCCcHHHHHhhC---------CHHHHHHHHHH
Confidence 344445778899988643 33 2332 22111122 389999999987 7888888875
Q ss_pred hCCCCCHHHHHHHHHHHHhhcCCC--HHHHHHHhc-CC--CCCCHHHHH
Q psy14238 124 TGDVPSEAQVQALSKSWASRAELP--SHVVTMLNN-FP--NHLHPMSQF 167 (203)
Q Consensus 124 ~GeLPt~~el~~f~~~L~~~~~lp--e~v~~~i~~-~P--~~aHPM~~L 167 (203)
|||.+-.......--+-+....+. .++.++|.. +| +..||.+..
T Consensus 149 yGee~~a~~iA~~Iv~~R~~~pi~tt~~L~~ii~~~~p~~~~~hpatr~ 197 (285)
T 1wg8_A 149 LGEEPQAYRIARAIVAAREKAPIETTTQLAEIVRKAVGFRRAGHPARKT 197 (285)
T ss_dssp HHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHHCCCSSSCTTHHH
T ss_pred hcCHhHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCCCCCCchHHH
Confidence 699988776655433333333444 456666654 56 456995543
No 32
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.03 E-value=3.1 Score=32.58 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.8
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
.|||++++||.+- +.||++=|+
T Consensus 7 tyrG~~ld~L~~m----------s~~~l~~L~ 28 (132)
T 3j20_T 7 RYRGYTLEQLMNM----------SLEELARLF 28 (132)
T ss_dssp CSSSSCHHHHHHH----------HHHHHHHHS
T ss_pred EEcCCcHHHHHcC----------CHHHHHHHh
Confidence 8999999999987 688877664
No 33
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=55.87 E-value=3.9 Score=32.40 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=19.6
Q ss_pred eeecCccHHHHHhhCCCCCCCCCCCHHHHHHHH
Q psy14238 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122 (203)
Q Consensus 90 I~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLL 122 (203)
..|||++++||.+..-+ ......+.||++=|+
T Consensus 11 ftyrG~~l~~L~~~~~~-~~~~~m~~~~~~~l~ 42 (144)
T 2xzm_S 11 FTFRGKGLEELTALASG-SNSEKLISDELAALF 42 (144)
T ss_dssp CCCCTTCHHHHHHHHSS-TTCCSSSCHHHHHHS
T ss_pred eeecCCcHHHHHhhhcc-cccccCCHHHHHHHh
Confidence 38999999999992211 111223667766553
No 34
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=51.38 E-value=36 Score=31.12 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhCC----CCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGD----VPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~Ge----LPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+-+..+++|+ .|++.+.+.|...|.-+.. ... .+.++..+ ..++|-..++++|++|.
T Consensus 197 ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST~taRvvaS--t~ad~ysavaAgi~aL~ 265 (427)
T 3msu_A 197 YGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHEQNASTSTVRLSGS--TGNSPYAAIIAGITALW 265 (427)
T ss_dssp SCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCCCChhHHHHHHHHc--cCCCHHHHHHHHHHHcc
Confidence 48889999999998 9999999999998876542 444 44555554 56899999999999983
No 35
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=48.15 E-value=3.8 Score=32.84 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=0.8
Q ss_pred eeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 90 IRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 90 I~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
..|||++++||.+- ++|+++=|+ |+ .|...|..-|.
T Consensus 24 FtYrG~~ld~Ll~m----------s~eel~~L~-----~a-R~RR~l~RGl~ 59 (154)
T 3iz6_R 24 YSYRGVDLDALLDM----------STDDLVQLF-----PA-RARRRFQRGLK 59 (154)
T ss_dssp --------------------------------------------------CC
T ss_pred EEEecCcHHHHHhC----------CHHHHHHHc-----cH-HHhhhhhcCCC
Confidence 38999999999986 678866654 43 44455544443
No 36
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=47.40 E-value=29 Score=31.67 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhhcC--CCH--HHHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 112 EPLPEGLFWLLVTGD-----VPSEAQVQALSKSWASRAE--LPS--HVVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 112 ~~~fEev~yLLl~Ge-----LPt~~el~~f~~~L~~~~~--lpe--~v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.-+|-+-++.+++|+ -|++.+.+.|...|.-+.. ... .+.++..+ ..++|-..++++|++|
T Consensus 190 ~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe~N~ST~taRvvaS--t~ad~ysaiaAgi~aL 259 (426)
T 3l96_A 190 DLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGS--SGANPFACIAAGIASL 259 (426)
T ss_dssp TSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHH--TTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHhc--cCCcHHHHHHHHHHhc
Confidence 348999999999998 8999999999999886552 444 44566655 5689999999999998
No 37
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=45.21 E-value=14 Score=27.70 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=39.5
Q ss_pred ecCCCCe-----eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCC
Q psy14238 84 LDPEEGI-----RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELP 147 (203)
Q Consensus 84 IDg~~GI-----~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lp 147 (203)
.|++.|| ++++..++.|.-. -|=|-||+=++.+.+.+|.-.+-+.|.+++.|.
T Consensus 16 qd~~~Gv~~~~r~~~~~~~~~cF~G-----------selVdWLi~~~~~~~R~EAv~lgq~Ll~~G~i~ 73 (109)
T 1uhw_A 16 KDPEKGIKELNLEKDKKVFNHCLTG-----------SGVIDWLVSNKLVRNRQEGLMISASLLSEGYLQ 73 (109)
T ss_dssp HCTTTSCCCEEEESSSCEEEEECCH-----------HHHHHHHHHHTSSSSHHHHHHHHHHHHHHTSSE
T ss_pred hCCCCCceeeeeEECCEEccccccc-----------hHHHHHHHHcCCCCCHHHHHHHHHHHHHCCeEE
Confidence 3556665 4555565555432 367999999999999999999999999988653
No 38
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=37.84 E-value=33 Score=27.20 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHhh-cCCCHHHHHHHhc
Q psy14238 126 DVPSEAQVQALSKSWASR-AELPSHVVTMLNN 156 (203)
Q Consensus 126 eLPt~~el~~f~~~L~~~-~~lpe~v~~~i~~ 156 (203)
.+-|.+|+++|..+|..| +.+|+.|.+++.-
T Consensus 39 ~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~v 70 (173)
T 2qsr_A 39 QIDNRVNYEELQEELIDRFGEYPDVVAYLLEI 70 (173)
T ss_dssp TCCSHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCCcHHHHHHHHH
Confidence 346899999999999876 5799999988763
No 39
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=37.51 E-value=1.3e+02 Score=27.41 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhCCC-----CCHHHHHHHHHHHHhhcC--CCHH--HHHHHhcCCCCCCHHHHHHHHHHHh
Q psy14238 113 PLPEGLFWLLVTGDV-----PSEAQVQALSKSWASRAE--LPSH--VVTMLNNFPNHLHPMSQFSAAITAL 174 (203)
Q Consensus 113 ~~fEev~yLLl~GeL-----Pt~~el~~f~~~L~~~~~--lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL 174 (203)
.++-+-+..+++|+- |++.+.+.|...|.-|.. +... ..+++.+ ..++|-+.++++|++|
T Consensus 199 ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe~NaSTftaRvvaS--t~ad~ysaiaAgi~aL 267 (436)
T 2h12_A 199 LNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTSTVRLAGS--TGANPFACIAAGIAAL 267 (436)
T ss_dssp SCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCCCchHHHHHHHHHh--cCccHHHHHHHHHHhc
Confidence 478888888899987 999999999999976552 4544 4455554 5689999999999998
No 40
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=37.08 E-value=56 Score=22.68 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=34.1
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWA 141 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~ 141 (203)
.-||++..||++.+. --...+.-+..|+-|+.+.+..+.+.|.
T Consensus 34 ~~~glTq~eLA~~~G--------iS~~tis~iE~G~~~s~~~l~kIa~~L~ 76 (88)
T 3t76_A 34 IDRDMKKGELREAVG--------VSKSTFAKLGKNENVSLTVLLAICEYLN 76 (88)
T ss_dssp HHTTCCHHHHHHHHT--------CCHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHC--------cCHHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 557899999999873 2346778888999999998888877764
No 41
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=36.85 E-value=69 Score=20.32 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=32.2
Q ss_pred eecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Q psy14238 91 RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWA 141 (203)
Q Consensus 91 ~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~ 141 (203)
.-+|++..||++.+. --...++-+..|+ -|+.+.+..+...|.
T Consensus 18 ~~~glsq~~lA~~~g--------is~~~is~~e~g~~~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 18 AEKGKTNLWLTETLD--------KNKTTVSKWCTNDVQPSLETLFDIAEALN 61 (73)
T ss_dssp HHHTCCHHHHHHHTT--------CCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHC--------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 347899999999873 2346677778886 699888888776664
No 42
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=29.11 E-value=2e+02 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc---CCCHH--HHHHHhcCCCCCCHHHHHHHHHHHhC
Q psy14238 113 PLPEGLFWLLVTGDVPSEAQVQALSKSWASRA---ELPSH--VVTMLNNFPNHLHPMSQFSAAITALN 175 (203)
Q Consensus 113 ~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~---~lpe~--v~~~i~~~P~~aHPM~~L~~~vsaL~ 175 (203)
.+|-+-+..+|+| |++.+.+.|...|.-+. ..... ..++.-+ ..++|-..++++|++|.
T Consensus 205 ls~a~nfl~ml~~--p~~~~~~~ld~~LiLhADHeg~N~STftaRvvaS--t~ad~ysavaagi~aL~ 268 (435)
T 1csh_A 205 LDWSHNFTNMLGY--TDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGS--ALSDPYLSFAAAMNGLA 268 (435)
T ss_dssp SCHHHHHHHHHTC--CCHHHHHHHHHHHHHTSCCCSCSHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcC--CChHHHHHHHHHHHHccCCCCCchHHHHHHHHHh--cCCCHHHHHHHHHHhcc
Confidence 3788888888888 99999999999887654 24443 4444444 46899999999999983
No 43
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.99 E-value=82 Score=19.06 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=27.9
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSW 140 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L 140 (203)
-+|++..||++.+. .+ ...+.-+..|+ -|+.+.+..+...+
T Consensus 12 ~~g~s~~~lA~~~g-------is-~~~i~~~e~g~~~~~~~~l~~i~~~l 53 (66)
T 2xi8_A 12 KKKISQSELAALLE-------VS-RQTINGIEKNKYNPSLQLALKIAYYL 53 (66)
T ss_dssp HTTCCHHHHHHHHT-------SC-HHHHHHHHTTSCCCCHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC-------cC-HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46899999998863 13 35566677776 67877776665544
No 44
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=28.70 E-value=97 Score=19.56 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=30.4
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCC--CCHHHHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV--PSEAQVQALSKSWA 141 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeL--Pt~~el~~f~~~L~ 141 (203)
-+|++..+|++.+. .+ ...+.-+..|+- |+.+.+..+...|.
T Consensus 18 ~~g~sq~~lA~~~g-------is-~~~i~~~e~g~~~~~~~~~l~~ia~~l~ 61 (78)
T 3b7h_A 18 QQNLTINRVATLAG-------LN-QSTVNAMFEGRSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HTTCCHHHHHHHHT-------CC-HHHHHHHHCTTCCCCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC-------cC-HHHHHHHHcCCCCCCCHHHHHHHHHHcC
Confidence 46899999999863 13 356666788874 99888877766653
No 45
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=24.30 E-value=30 Score=25.72 Aligned_cols=57 Identities=14% Similarity=-0.035 Sum_probs=31.6
Q ss_pred ceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHh
Q psy14238 60 GEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVT 124 (203)
Q Consensus 60 g~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~ 124 (203)
..||+||+..|-+-|.. -|.|+.-+ --+..-.|+|++|+++.+|. .+.|++.--|.+
T Consensus 32 ~~I~~dP~i~~G~P~I~-GTRI~V~~-Il~~l~~G~s~eeIl~~yP~------Lt~edI~aAL~Y 88 (106)
T 2ga1_A 32 NPIQITPGVCGGQARIR-NTRIPVWT-LVAYRQQGAPDKELLANYPG------LTAEDLSAAWHY 88 (106)
T ss_dssp CSEECCTTSGGGCCEET-TSCCBHHH-HHHHHHTTCCHHHHHHHSTT------CCHHHHHHHHHH
T ss_pred CCeEeCccccCCccEEe-cceeeHHH-HHHHHHcCCCHHHHHHHCCC------CCHHHHHHHHHH
Confidence 57999998765333311 12333211 01224468999999988762 355665444433
No 46
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=23.94 E-value=46 Score=25.42 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhcCC
Q psy14238 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 116 Eev~yLLl~GeLPt~~el~~f~~~L~~~~~l 146 (203)
|=|-||+=.+.+-+.+|...+-+.|.+++.|
T Consensus 52 dlVdWLl~~~~~~sR~EAv~lg~~Ll~~G~i 82 (127)
T 2cso_A 52 CVIDWLVSNQSVRNRQEGLMIASSLLNEGYL 82 (127)
T ss_dssp HHHHHHHHTTSCSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCeE
Confidence 6789999999989999999999999998854
No 47
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=23.54 E-value=3.2e+02 Score=24.23 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=45.7
Q ss_pred cCccHHHHHhhCCCCCCCCCCCHHHHHHHHH-hCCCCCHHHHHHHHHHHHhhcCCC--HHHHHHHhc-CCC---CCCHHH
Q psy14238 93 RGLSIPECQKVLPKAKGGEEPLPEGLFWLLV-TGDVPSEAQVQALSKSWASRAELP--SHVVTMLNN-FPN---HLHPMS 165 (203)
Q Consensus 93 RGy~I~eLa~~~pk~~~~~~~~fEev~yLLl-~GeLPt~~el~~f~~~L~~~~~lp--e~v~~~i~~-~P~---~aHPM~ 165 (203)
+|.+..|+...+ +.++.+..|. |||.+-.......--+-+....+- .++.++|.. +|. ..||.+
T Consensus 166 ~~~tAadvvn~~---------~e~eLa~Il~~YGEEr~a~rIA~aIv~~R~~~pi~tT~~La~ii~~a~p~~~~~~hpAt 236 (347)
T 3tka_A 166 RGQSAAEWLQTA---------EEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPAT 236 (347)
T ss_dssp SSCCHHHHHHHC---------CHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHHHHHHSCCC----CTTH
T ss_pred CCCCHHHHHhhC---------CHHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhCCccccCCCchH
Confidence 589999999998 8899999885 599988777665544334444554 356666654 663 469987
Q ss_pred HHH
Q psy14238 166 QFS 168 (203)
Q Consensus 166 ~L~ 168 (203)
..-
T Consensus 237 rtF 239 (347)
T 3tka_A 237 RTF 239 (347)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 48
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.65 E-value=1.1e+02 Score=19.18 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=27.3
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSW 140 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L 140 (203)
-+|++..||++.+. .+ ...+.-+..|+ -|+.+.+..+...+
T Consensus 21 ~~glsq~~lA~~~g-------is-~~~i~~~e~g~~~~~~~~l~~la~~l 62 (77)
T 2b5a_A 21 QKGVSQEELADLAG-------LH-RTYISEVERGDRNISLINIHKICAAL 62 (77)
T ss_dssp HTTCCHHHHHHHHT-------CC-HHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC-------CC-HHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 46889999998863 13 35566667776 57777766655444
No 49
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.59 E-value=1.4e+02 Score=19.48 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=31.0
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhC--CCCCHHHHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTG--DVPSEAQVQALSKSWA 141 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~G--eLPt~~el~~f~~~L~ 141 (203)
-+|++..||++.+. .-...+.-+..| ..|+.+.+..+.+.|.
T Consensus 21 ~~gltq~elA~~~g--------is~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 21 EKGYSLSELAEKAG--------VAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp HTTCCHHHHHHHHT--------CCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC--------cCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 47899999999873 223566777788 5799888888766664
No 50
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=22.22 E-value=88 Score=22.94 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=31.3
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHhcCCCCCCHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAI 171 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~GeLPt~~el~~f~~~L~~~~~lpe~v~~~i~~~P~~aHPM~~L~~~v 171 (203)
|.|-++.++++.+. |.-=.+|-..||++++ |.+.+.... +.....+..+....+|...|...+
T Consensus 36 ~~~~s~~~IA~~aG------------vs~~tlY~~F~sKe~L--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~ 98 (212)
T 3loc_A 36 FHGTRLEQIAELAG------------VSKTNLLYYFPSKEAL--YIAVLRQIL---DIWLAPLKAFREDFAPLAAIKEYI 98 (212)
T ss_dssp HHHCCHHHHHHHHT------------SCHHHHHHHSSSHHHH--HHHHHHHHH---HHHHHHHHHCCTTSCHHHHHHHHH
T ss_pred cccCCHHHHHHHHC------------cCHHHHhhhCCCHHHH--HHHHHHHHH---HHHHHHHHHhccCCCHHHHHHHHH
Confidence 56678888888762 1111344455777765 333222211 223333444555555665554433
No 51
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.02 E-value=1.3e+02 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHHHHHHHh-------CCCCCHHHHHHHHHHHHhhcCC
Q psy14238 115 PEGLFWLLVT-------GDVPSEAQVQALSKSWASRAEL 146 (203)
Q Consensus 115 fEev~yLLl~-------GeLPt~~el~~f~~~L~~~~~l 146 (203)
-|-|-||+-. |...|.+|.-.+-+.|.++..+
T Consensus 44 sE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~gvi 82 (105)
T 2ysr_A 44 GEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHVI 82 (105)
T ss_dssp HHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHCCCe
Confidence 4789999998 9999999999999999887754
No 52
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=21.78 E-value=1.6e+02 Score=22.58 Aligned_cols=94 Identities=9% Similarity=0.028 Sum_probs=57.0
Q ss_pred cchhHHHHHHhhCc--ccchHHHHHHHhhCCcccceEEecccCcccccccceeeeeceecCCCCeeecCccHHHHHhhCC
Q psy14238 28 ASTDLKAVLAAKIP--SEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLP 105 (203)
Q Consensus 28 ~~~~lk~~~~~~ip--~~~~~~~di~~~~~~~~ig~~T~d~g~~g~rg~~~~~t~iS~IDg~~GI~YRGy~I~eLa~~~p 105 (203)
...++.+.|...-. .+-+.++++.+.-+.-.-...|=+. =..||.+-+|=...+|.+..+.|+|.+=..+.+.
T Consensus 9 ~~~~ii~~F~~~~~we~Ry~~LI~lgk~Lp~lpe~~k~~~~---~V~GCqS~VWl~~~~~~~g~l~f~adSDA~IvkG-- 83 (141)
T 3g0m_A 9 DKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNPQN---TIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKG-- 83 (141)
T ss_dssp CHHHHHHHHHTCCSHHHHHHHHHHHHHTSCCCCGGGCSGGG---BCCSSSSCEEEEEEECTTSBEEEEEEESSHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCHHHcCccC---cCCCCccCeeEEEEEcCCCEEEEEecCccHHHHH--
Confidence 34566666666544 2333577887776554322222222 2459998888666665433349999997777764
Q ss_pred CCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q psy14238 106 KAKGGEEPLPEGLFWLLVTGDVPSEAQVQALS 137 (203)
Q Consensus 106 k~~~~~~~~fEev~yLLl~GeLPt~~el~~f~ 137 (203)
+-.+.--++.|. |.+|...|.
T Consensus 84 ---------l~alL~~~~~G~--tp~eIl~~d 104 (141)
T 3g0m_A 84 ---------LMAVVFILYHQM--TAQDIVHFD 104 (141)
T ss_dssp ---------HHHHHHHHHTTC--BHHHHHHCC
T ss_pred ---------HHHHHHHHHcCC--CHHHHHhCC
Confidence 456666667787 567776553
No 53
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.67 E-value=1.5e+02 Score=18.96 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=28.8
Q ss_pred ecCccHHHHHhhCCCCCCCCCCCHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Q psy14238 92 FRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD-VPSEAQVQALSKSWA 141 (203)
Q Consensus 92 YRGy~I~eLa~~~pk~~~~~~~~fEev~yLLl~Ge-LPt~~el~~f~~~L~ 141 (203)
-+|++..||++.+. .+. ..+.-+..|+ -|+.+.+..+.+.+.
T Consensus 25 ~~gltq~elA~~~g-------is~-~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 25 AAGITQKELAARLG-------RPQ-SFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHTCCHHHHHHHHT-------SCH-HHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHC-------cCH-HHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 36889999998863 133 4555566777 688887777766553
Done!