RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14238
(203 letters)
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 261 bits (670), Expect = 6e-87
Identities = 121/169 (71%), Positives = 146/169 (86%)
Query: 29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60
Query: 89 GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LPS
Sbjct: 61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120
Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYI 197
HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE++
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFV 169
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 53.0 bits (128), Expect = 1e-08
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 37/162 (22%)
Query: 25 ATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLV----CE 80
AT + A + + V + RK G T D G C
Sbjct: 13 ATISVDGKSAEMPVLSGTLGPDVIDIRKLPAQL--GVFTFD---------PGYGETAACN 61
Query: 81 TSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPSEAQ 132
+ + +D ++G+ RG I L E + +LL+ G++P++AQ
Sbjct: 62 SKITFIDGDKGVLLHRGYPI--------------AQLAENASYEEVIYLLLNGELPNKAQ 107
Query: 133 VQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ + + L + N F HPM+ + AL
Sbjct: 108 YDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGAL 149
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 51.4 bits (124), Expect = 4e-08
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL + T++ +D E+GI R+RG +I + L EE +L++ G +
Sbjct: 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIED----LVNYGSYEE-----TIYLMLYGKL 56
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
P++ ++ L E+P V+ + P + AL
Sbjct: 57 PTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAAL 103
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 51.4 bits (124), Expect = 4e-08
Identities = 26/133 (19%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 45 ERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQ 101
+ + +T V + + G+ T++ + +RG I +
Sbjct: 14 SHMTDTTILQNNTHVIKPKKS---VALSGV--PAGNTALCTVGKSGNDLHYRGYDILD-- 66
Query: 102 KVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHL 161
L + EE + LL+ G +P+ ++ A + LP++V T+L P
Sbjct: 67 --LAEHCEFEE-----VAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAAS 119
Query: 162 HPMSQFSAAITAL 174
HPM ++AL
Sbjct: 120 HPMDVMRTGVSAL 132
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 51.1 bits (123), Expect = 6e-08
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 22/105 (20%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPS 129
CE+ + +D +G+ RG I E + + + L+ G++P+
Sbjct: 60 ACESKITYIDGGKGVLLHRGYPI--------------EEWTQKSNYRTLCYALIYGELPT 105
Query: 130 EAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ QV++ + ++ + HV + P H HPMS A + L
Sbjct: 106 DEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVL 150
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 50.7 bits (122), Expect = 7e-08
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 60 GEVTVDMMYGGMRGIKG-LVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLP 115
G++ + G++ L+ TS+ +D E+GI +RG I E L + EE
Sbjct: 12 GKILQSPCGPIIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEE----LARLSTYEE--- 64
Query: 116 EGLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ +L++ G +P++ +++ EL V ++ N HPM AA+ A
Sbjct: 65 --VSYLILYGRLPTKRELEDYINRMKKYRELHPATVEVIRNLAK-AHPMFALEAAVAAE 120
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 50.2 bits (121), Expect = 9e-08
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
+GL + T + +D GI R+RG I + L EE L L++ G++
Sbjct: 7 RGLENVIIKTTGLTYIDGINGILRYRGYDIND----LVNYASYEE-----LIHLMLYGEL 57
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
P+ Q+ + E+P V++ + + P + + A L
Sbjct: 58 PNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGIL 104
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 50.0 bits (120), Expect = 1e-07
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 22/105 (20%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE-GLF----WLLVTGDVPS 129
CE+ + +D +EGI RG I + L + ++L+ G+ P+
Sbjct: 51 SCESKITFIDGDEGILLHRGFPI--------------DQLATDSNYLEVCYILLNGEKPT 96
Query: 130 EAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ Q + + + + + F HPM+ AL
Sbjct: 97 QEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGAL 141
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 49.5 bits (119), Expect = 2e-07
Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 78 VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGG-EEPLPEGLFWLLVTGDVPSEAQV 133
+ T + +D +GI R+ G S+ + + + EE + +L + G++P+E ++
Sbjct: 16 IKWTRLTTIDGNKGILRYGGYSVED----IIASGAQDEE-----IQYLFLYGNLPTEQEL 66
Query: 134 QALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ ++ ++P V+ + P ++ AA+ A+
Sbjct: 67 RKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAM 107
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 49.0 bits (118), Expect = 2e-07
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 60 GEVTVDMMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPE 116
G+RG ETS+ + E +RG I + L EE
Sbjct: 3 AMTKTA---KGLRGQ--SAGETSIATVGKEGHGLTYRGYRIED----LAANATFEE---- 49
Query: 117 GLFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+ +LL+ +P+++++ A +K + LP + L P HPM + L
Sbjct: 50 -VAYLLLKNKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSML 106
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 49.1 bits (118), Expect = 2e-07
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ +V T++ + P+ +RG + + L E+ + +LL G+
Sbjct: 52 GLAGV--VVDTTAISKVVPQTNSLTYRGYPVQD----LAARCSFEQ-----VAFLLWRGE 100
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+P++A++ S+ + + ++++L P++ HPM AI+ L
Sbjct: 101 LPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYL 148
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 47.9 bits (115), Expect = 6e-07
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G++GI ETS+ +D E+G +RG + + EE +L++ G
Sbjct: 4 GLKGI--TCVETSISHIDGEKGRLIYRGHHAKD----IALNHSFEE-----AAYLILFGK 52
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+PS ++Q A+ LP H+ ++ + PN++ MS ++AL
Sbjct: 53 LPSTEELQVFKDKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSAL 100
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 47.9 bits (115), Expect = 6e-07
Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ T++ ++ + +RG + E L E+ + +LL +
Sbjct: 8 GLAGV--TADVTAISKVNSDTNSLLYRGYPVQE----LAAKCSFEQ-----VAYLLWNSE 56
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
+P++++++A S +L +V ++ HPM A++ L
Sbjct: 57 LPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVL 104
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 46.4 bits (111), Expect = 2e-06
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL V ET + +D E G +RG SI + L + EE + +L++ G +
Sbjct: 5 KGLEDVYVKETEITYIDGELGRLYYRGYSIYD----LAEFSNFEE-----VSYLILYGKL 55
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
P+ ++ + LP ++ L PM A++ L
Sbjct: 56 PNREELNWFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLL 102
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 46.4 bits (111), Expect = 2e-06
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
KGL + +T++ +D +EG +RG S+ E L + EE + +LL G +
Sbjct: 3 KGLEDVYIDQTNICYIDGKEGKLYYRGYSVEE----LAELSTFEE-----VVYLLWWGKL 53
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
PS ++++ K A LP V+ ++ P + HPM I+ L
Sbjct: 54 PSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYL 100
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 46.0 bits (110), Expect = 2e-06
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 66 MMYGGMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLL 122
M+ G+ G+ +CE+S+ LD G +RG+ + E L + EE + L
Sbjct: 1 MIQKGLEGV--KICESSICYLDGINGRLYYRGIPVEE----LAEKSTFEE-----TAYFL 49
Query: 123 VTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
G +P++++++ + A ELP+ + +L + P +LH + ++
Sbjct: 50 WYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIH 101
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 46.0 bits (110), Expect = 3e-06
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 75 KGL----VCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDV 127
+GL E+ + +D ++G + G+ I E L + EE +LL+ G +
Sbjct: 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQE----LAEKSSFEE-----TTFLLLHGRL 55
Query: 128 PSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITAL 174
P +++ S + A R LP+H++ +P HPMS A++
Sbjct: 56 PRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEF 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 7e-06
Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 55/183 (30%)
Query: 34 AVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEEGIR-- 91
+++A I N+ K+ K+ ++ +VL+P E R
Sbjct: 331 SIIAESIRDGLATWDNW-KHVNCDKLTT-IIESSL-------------NVLEPAE-YRKM 374
Query: 92 FRGLSIPECQKVLPKAKGGEEPLPE---GLFWLLVTGDVPSEAQVQALSKSWA------S 142
F LS+ P +P L W V + S S
Sbjct: 375 FDRLSV------FPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 143 RAELPSHVVTMLNNFPN--HLHPMSQFSAAITALNSESKF-----AKAYNDGVHKSKYW- 194
+PS + + N LH + + N F Y D Y+
Sbjct: 425 TISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQ-----YFY 474
Query: 195 EYI 197
+I
Sbjct: 475 SHI 477
Score = 41.8 bits (97), Expect = 8e-05
Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 80/246 (32%)
Query: 13 DLHQISNFLRTFATDASTDLKAVLAAKIPSEQER-------------VKNF-----RKNY 54
D + + ++ + ++ ++ +K V+ F R NY
Sbjct: 34 DCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 55 G---------------STKVGEVTVDMMYGG--------------MRGIKGLVCETSVLD 85
T++ D +Y ++ + E L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LR 148
Query: 86 PEEGIRFRGLSIPECQK-VLP----KAKGGEEPLPEGLFWLLVTGDVPSE----AQVQAL 136
P + + G+ K + + + + +FWL + + S +Q L
Sbjct: 149 PAKNVLIDGV--LGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKL 205
Query: 137 ----SKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYN--DGVHK 190
+W SR++ S N +H A + L + V
Sbjct: 206 LYQIDPNWTSRSDHSS-------NIKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 191 SKYWEY 196
+K W
Sbjct: 256 AKAWNA 261
Score = 32.9 bits (74), Expect = 0.075
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 22/106 (20%)
Query: 104 LPKAKGGEE-PLPEGLF----WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFP 158
L + E L +F +L E +++ S +W + + + + L +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFL--------EQKIRHDSTAWNASGSI-LNTLQQLKFYK 531
Query: 159 NHL---HPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQPL 201
++ P ++ + A+ F + + SKY + ++ L
Sbjct: 532 PYICDNDP--KYERLVNAI---LDFLPKIEENLICSKYTDLLRIAL 572
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 53/198 (26%)
Query: 14 LHQISNF-------------LRTFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKVG 60
+ Q++++ LR++ A+ + ++ A +E + ++F + K
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS--VRKAI 300
Query: 61 EVTVDMMYGGMRGIKGLVCETSVLDPEEGIRFRGLSIPECQKVLPKAKGGEEPLPEGLFW 120
V + + G+R + + S+P +L + E +P +
Sbjct: 301 TV---LFFIGVRCYE---------------AYPNTSLP--PSILEDSLENNEGVPSPM-- 338
Query: 121 LLVTGDVPSEAQVQALSKSWASRAELP--SHVVTMLNNFPNHL----HPMSQFSAAITAL 174
L ++ ++ QVQ + + LP V L N +L P S + L
Sbjct: 339 LSISN--LTQEQVQDYVN--KTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-----LYGL 389
Query: 175 NSESKFAKAYNDGVHKSK 192
N + AKA G+ +S+
Sbjct: 390 NLTLRKAKA-PSGLDQSR 406
Score = 38.9 bits (90), Expect = 7e-04
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 77 LVCETSVLDPEEGI---RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPS--EA 131
L V+ E + +RG+++ Q +P+ + G G+ + S +
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIAINPGRVAASFSQE 1824
Query: 132 QVQALSKSWASRAELPSHVVTMLN-NFPNHLHPMSQFSAA--ITALNSESKFAKA 183
+Q + + R +V ++N N N Q+ AA + AL++ +
Sbjct: 1825 ALQYVVERVGKRT---GWLVEIVNYNVEN-----QQYVAAGDLRALDTVTNVLNF 1871
Score = 31.6 bits (71), Expect = 0.17
Identities = 37/222 (16%), Positives = 62/222 (27%), Gaps = 96/222 (43%)
Query: 18 SNFLRTFATDASTDLKAVLAAKIPSEQE----RVKNFRKNY------------------- 54
+ +L D+ A LAAK+ E + + K KNY
Sbjct: 93 NCYLE------GNDIHA-LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 55 -GSTKVGEVTVDMMYGG----------MRGI----KGLV----------CETSVLDPEEG 89
+ G + ++GG +R + LV + +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 90 IRF--RGLSIPECQKVL--PKAKGGEE---------PL-------------------PEG 117
+ +GL+I + L P ++ PL P
Sbjct: 206 EKVFTQGLNI---LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 118 LFWLL--VTG---DVPSEAQVQALSKSWASRAELPSHVVTML 154
L L TG + + A A + SW S +T+L
Sbjct: 263 LRSYLKGATGHSQGLVT-AVAIAETDSWESFFVSVRKAITVL 303
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 27.9 bits (62), Expect = 1.7
Identities = 5/29 (17%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 30 TDLKAVLAAKIPSEQ-ERVKNFRKNYGST 57
+ L +I +E+ +++ + + YG++
Sbjct: 197 IHIITYLEGRITAEEKSKIEQYLQTYGAS 225
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural
genomics, center for structural genomics of infectious
diseases; 1.90A {Francisella tularensis}
Length = 232
Score = 27.8 bits (62), Expect = 2.0
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 30 TDLKAVLAAKIPSEQ-ERVKNFRKNYGS 56
+ + + ++ K +R+ YGS
Sbjct: 205 ESIFEYVKENLDETMIDKFKQYRQKYGS 232
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 28.1 bits (62), Expect = 2.3
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 122 LVTGDVPSEAQVQALSK-----SWASRAELPSHVVTMLNNFP 158
V Q+Q ++ +W S +T NN+P
Sbjct: 196 ANRAWVADSDQIQQIADFFFWTAWLSSTLRIGDEITYTNNWP 237
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 27.0 bits (60), Expect = 5.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 34 AVLAAKIPSEQERVKNFRKNYGSTKVGEVTV 64
A LA+K+ ER +VG V+V
Sbjct: 358 AYLASKLAEFYERAGRVVTLGSDYRVGSVSV 388
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 26.6 bits (59), Expect = 6.3
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 113 PLPEGLFWLLVTGDVP-SEAQVQALSKSWASRAELPSHVVTMLNNF 157
P + W + V S+ Q+ AL + M+NNF
Sbjct: 201 PCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNF 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,029,752
Number of extensions: 170304
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 30
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)