RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14238
(203 letters)
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 208 bits (530), Expect = 2e-66
Identities = 121/171 (70%), Positives = 147/171 (85%)
Query: 29 STDLKAVLAAKIPSEQERVKNFRKNYGSTKVGEVTVDMMYGGMRGIKGLVCETSVLDPEE 88
ST+LK VLA+ IP EQ R+K FR+ +G+T VG++TVDM YGGMRG+KGL+ ETSVLDP+E
Sbjct: 1 STNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDE 60
Query: 89 GIRFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGDVPSEAQVQALSKSWASRAELPS 148
GIRFRG SIPECQK+LPKA GGEEPLPEGLFWLLVTG +P+ QV +SK WA RA LPS
Sbjct: 61 GIRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPS 120
Query: 149 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYIQQ 199
HVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE++ +
Sbjct: 121 HVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYE 171
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 76.4 bits (187), Expect = 3e-17
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 66 MMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVT 124
++ G+ + V + +D E+GI R+RG +I + L EE +L++
Sbjct: 1 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIED----LVNYGSYEE-----TIYLMLY 51
Query: 125 GDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNS 176
G +P++ ++ L E+P V+ + P + AL S
Sbjct: 52 GKLPTKKELNDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALAS 103
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
[TaxId: 56673]}
Length = 377
Score = 71.8 bits (175), Expect = 2e-15
Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query: 61 EVTVDMMYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLF 119
E T+ + G+ G+ V S ++ + +RG + E L E+ +
Sbjct: 1 EPTI---HKGLAGVTADVTAISKVNSDTNSLLYRGYPVQE----LAAKCSFEQ-----VA 48
Query: 120 WLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESK 179
+LL ++P++++++A S +L +V ++ HPM A++ L +
Sbjct: 49 YLLWNSELPNDSELKAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGANHA 108
Query: 180 FAKAYNDGVHKSKYWEYIQQ 199
A+ + + K +
Sbjct: 109 RAQDSSPEANLEKAMSLLAT 128
>d1ioma_ a.103.1.1 (A:) Citrate synthase {Thermus thermophilus
[TaxId: 274]}
Length = 374
Score = 66.8 bits (162), Expect = 6e-14
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 70 GMRGIKGLVCETSV--LDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTGD 126
G+ G+ L E+ + +D ++G + G+ I E E+ E +LL+ G
Sbjct: 4 GLEGV--LFTESRMCYIDGQQGKLYYYGIPIQELA---------EKSSFEETTFLLLHGR 52
Query: 127 VPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYND 186
+P +++ S + A R LP+H++ +P HPMS A++ +
Sbjct: 53 LPRRQELEEFSAALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEGDISR 112
Query: 187 GVHKSKYWEYI 197
K + I
Sbjct: 113 EALYEKGLDLI 123
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 62.9 bits (152), Expect = 1e-12
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 67 MYGGMRGIKGLVCETSVLDPEEGI-RFRGLSIPECQKVLPKAKGGEEPLPEGLFWLLVTG 125
+ G+ + +D +EG +RG S+ E E E + +LL G
Sbjct: 1 LAKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELA---------ELSTFEEVVYLLWWG 51
Query: 126 DVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYN 185
+PS ++++ K A LP V+ ++ P + HPM I+ L +
Sbjct: 52 KLPSLSELENFKKELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPV 111
Query: 186 DGVHKSKY 193
+
Sbjct: 112 TPEEVYRI 119
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 130
Score = 27.9 bits (62), Expect = 0.47
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 122 LVTGDVPSEAQVQALSKSWASRAEL-PSHVVTMLNNFPNH 160
+V+G +P + V+ L +S SR E+ +HV+ L+ N
Sbjct: 48 MVSGFIPLKPTVKMLERSNVSRTEVSNNHVLIYLDKVTNE 87
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 213
Score = 26.6 bits (58), Expect = 1.8
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 30 TDLKAVLAAK--IPSEQERVKNFRKNYG 55
DL A L K + V+ +R+ +G
Sbjct: 185 KDLIAYLEEKPDMAEHLAAVRAYREEFG 212
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 26.8 bits (58), Expect = 2.0
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 113 PLPEGLFWLLVTGDVP-SEAQVQALSKSWASRAELPSHVVTMLNNF 157
P + W + V S+ Q+ AL + M+NNF
Sbjct: 199 PCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNF 244
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 26.2 bits (57), Expect = 2.8
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 16/141 (11%)
Query: 67 MYGGMRGIKGLVCETSV-LDPE--EGIRFRGLSIPECQKVLPKAKGGEEPLPE------G 117
+ G G GL + V LD + RG + + + G
Sbjct: 35 VMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRG 94
Query: 118 LFWLLVTGDVPSEAQVQALSKSWASRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSE 177
+ L+V G S + T+ N+ + + F TAL++
Sbjct: 95 IDALVVIGGDGS---YMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFF----TALSTV 147
Query: 178 SKFAKAYNDGVHKSKYWEYIQ 198
+ D + ++
Sbjct: 148 VEAIDRLRDTSSSHQRISVVE 168
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 25.5 bits (56), Expect = 5.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 50 FRKNYGSTKVGEVTVDMMYGGMRGIKGLVC 79
R++YG + G+ + GGM G + L
Sbjct: 154 GRQHYGGSLKGKWVLTAGLGGMGGAQPLAA 183
>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 23.7 bits (51), Expect = 9.2
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 23 TFATDASTDLKAVLAAKIPSEQERVKNFRKNYGSTKV-------GEVTVDMMYGGMRGIK 75
F + L+ I + + R+ V G + + YGG + I
Sbjct: 24 EFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIV 83
Query: 76 GLVCETSVLDPE 87
G + V P
Sbjct: 84 GSPFKAKVTGPR 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.386
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,544
Number of extensions: 30552
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 13
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)