BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1424
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2
SV=1
Length = 312
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 142/188 (75%), Positives = 169/188 (89%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+Y+GGV
Sbjct: 1 MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKYVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG++ DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTGTATDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+IDQLL EER+CDVILPR+QKR VLEE +++ +
Sbjct: 121 EPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1
Length = 312
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 142/188 (75%), Positives = 170/188 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1 MANRTVKDAHSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVRALGA YMRLTG++ DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+IDQLL EER+CDVILPR+QKR VLEE +++ +
Sbjct: 121 EPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRLQKRFVLEETEQLDPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1
Length = 312
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 170/188 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2
SV=1
Length = 312
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 170/188 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1
Length = 312
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 170/188 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q0P5I6|PR38A_BOVIN Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1
Length = 312
Score = 314 bits (804), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 170/188 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1
Length = 313
Score = 312 bits (799), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 168/188 (89%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1 MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGN+KPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+SVDCYKYL
Sbjct: 61 YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ERMCD+ILPR+QKR VLEE ++ +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180
Query: 181 VSILDDDI 188
+S L++D+
Sbjct: 181 ISALEEDL 188
>sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1
Length = 312
Score = 306 bits (785), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 136/188 (72%), Positives = 168/188 (89%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G F ++H+DE+I +LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 VSILDDDI 188
VS L++D+
Sbjct: 181 VSALEEDM 188
>sp|Q9UUD2|PRP38_SCHPO Pre-mRNA-splicing factor 38 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp38 PE=3 SV=1
Length = 210
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 17 PQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILK 76
P +LI KI+R RI DS YWKE+CF L+A LVD+A+ L YIGG +G N +PT F+CL+ K
Sbjct: 21 PTFLIGKILRERIVDSIYWKEQCFGLNACSLVDRAVRLEYIGGQYG-NQRPTEFICLLYK 79
Query: 77 MLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQ 136
+LQI PEK+I+ +++ EFKY+RAL A+Y+RLT V+ ++ LEPL D RKLR +
Sbjct: 80 LLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEVHQTLEPLLRDYRKLRIRT-N 138
Query: 137 GAFEVIHMDEYIDQLLREERMCDVILPRIQKR 168
+ ++DE +D LL E +CD+ LP ++ R
Sbjct: 139 SEIRLTYLDEVVDDLLNAEVVCDISLPPLRSR 170
>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1
Length = 542
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 71 LCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKL 130
CL+ K+ ++ + V+ I + + Y+RALG Y+R T D + + E D L
Sbjct: 130 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 189
Query: 131 RFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
+ G V+ + E + L + + PRI
Sbjct: 190 DV--KAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 222
>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=2
SV=1
Length = 542
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 71 LCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKL 130
CL+ K+ ++ + V+ I + + Y+RALG Y+R T D + + E D L
Sbjct: 129 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 188
Query: 131 RFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
+ G V+ + E + L + + PRI
Sbjct: 189 DV--KAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1
Length = 546
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 68 TPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADS 127
T F CL+ K+ ++ + V+ I + + Y+RALG Y+R T D + + E D
Sbjct: 127 TAF-CLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDE 185
Query: 128 RKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
L + G V+ + E + L + + PRI
Sbjct: 186 EDLDV--KAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 41/170 (24%)
Query: 71 LCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKL 130
CL+ K+ ++ + V+ I + + Y+RALG Y+R T D + + E D L
Sbjct: 129 FCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDL 188
Query: 131 RFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKVSILDDDIDD 190
+ G V+ + E + L + + PRI + +I+ + + D +
Sbjct: 189 DV--KAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKIKKDGKE 246
Query: 191 G---------------------------------------GSSSSEDENE 201
G GSSS + E E
Sbjct: 247 GAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELE 296
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
Length = 501
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 68 TPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADS 127
T F CL+ K+ ++ + V+ I + + +RALG Y+R T D + + D
Sbjct: 105 TAF-CLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDWYDEFLDDE 163
Query: 128 RKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
+L + G V+ + E + L + + PRI
Sbjct: 164 EELDV--KAGGGCVMTVGEMLRSFLTKLEWFSTLFPRI 199
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 233 RDRRYRSEKSTKERVRERS--RSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRS--- 287
++R +E KE ++E S R KERD+ ++ R + R+ DRDR +D EREK R+
Sbjct: 172 KERSSSAEHKQKEELKEDSKPREKERDKEKAKEADRDRHREPDRDRNRDGEREKARARAK 231
Query: 288 -DRDRGDR 294
DRDR ++
Sbjct: 232 QDRDRNNK 239
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 21/136 (15%)
Query: 179 VKVSILDDDIDDGG---SSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDR 235
VK + D +D G +S S+D+ G + ++R + S +DPD+ +D+
Sbjct: 125 VKRVLAGDKLDQKGKPSTSRSQDKENREGREHHRDREERKGIKESSGSREQKDPDQPKDQ 184
Query: 236 RYR---------SEKSTKERVRERSRSKERDR-----RHRSKSPRHKDRDYDRDRYKDYE 281
+ +E+S K R RER++ ++RD+ R + K+ R K+R+ ++DR ++ E
Sbjct: 185 ESKRDDKDRRRDAERSDKGRERERTKDRDRDKDKSRDREKDKT-REKEREREKDRNREKE 243
Query: 282 REKYRSDRDRGDRRDR 297
RE+ D+DR +++R
Sbjct: 244 RER---DKDRDKKKER 256
>sp|Q568R1|NSRP1_DANRE Nuclear speckle splicing regulatory protein 1 OS=Danio rerio
GN=nsrp1 PE=1 SV=2
Length = 516
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 233 RDRRYRSEKSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRG 292
RDRR S K RER R ERDRR S R +DR +RDR + +++ R RD+
Sbjct: 343 RDRRNSSPKD-----RERDRKGERDRRDNSPKDRERDRKGERDRRDNSPKDRERETRDKS 397
Query: 293 --DRRDRGDRDR 302
DRRD+ +DR
Sbjct: 398 PKDRRDKSPKDR 409
>sp|Q5RG44|K1211_DANRE Uncharacterized protein KIAA1211 homolog OS=Danio rerio
GN=si:dkeyp-117h8.2 PE=4 SV=3
Length = 1079
Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 166 QKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSH 225
K V +N + K + + S ++E E+ EV+D +R D H SK D
Sbjct: 117 HKLSVKPKNQRVSRKHRRFTQEFHEDDFSEIQEEFEKDEEVFDSSREDYGIIHGSKED-- 174
Query: 226 HRDPDKERDRRYRSEKSTKERVRERSRSKERD-RRHR 261
+ +K + +R+ E+ +++R + +ER +HR
Sbjct: 175 YEPTEKSQRQRFHEEEKEHLEIKKREQEEERKMEKHR 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,298,325
Number of Sequences: 539616
Number of extensions: 5321826
Number of successful extensions: 46465
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 1092
Number of HSP's that attempted gapping in prelim test: 26354
Number of HSP's gapped (non-prelim): 9881
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)