Query psy1424
Match_columns 305
No_of_seqs 158 out of 272
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:57:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2889|consensus 100.0 1.1E-69 2.5E-74 480.6 9.9 201 1-201 1-201 (204)
2 PF03371 PRP38: PRP38 family; 100.0 1.2E-64 2.6E-69 446.2 13.6 169 8-177 2-172 (172)
3 KOG2888|consensus 100.0 1E-48 2.2E-53 373.6 11.3 171 9-181 46-237 (453)
4 PF12871 PRP38_assoc: Pre-mRNA 93.2 0.068 1.5E-06 43.6 2.5 18 179-196 1-18 (97)
5 KOG0835|consensus 89.9 2.6 5.7E-05 42.0 9.9 42 66-107 140-192 (367)
6 KOG1847|consensus 79.0 0.81 1.7E-05 49.0 0.8 42 235-276 748-790 (878)
7 KOG0796|consensus 78.9 1.5 3.2E-05 43.3 2.5 19 218-236 267-285 (319)
8 KOG0147|consensus 69.9 1.7 3.7E-05 45.5 0.5 11 254-264 111-121 (549)
9 KOG4368|consensus 68.2 1.9 4.2E-05 45.8 0.4 54 222-278 597-655 (757)
10 KOG0147|consensus 60.8 9.3 0.0002 40.2 3.7 10 144-153 5-14 (549)
11 KOG3263|consensus 52.8 14 0.0003 34.1 3.0 14 279-292 73-86 (196)
12 KOG4676|consensus 50.6 6.1 0.00013 40.5 0.5 12 42-53 71-82 (479)
13 KOG0835|consensus 44.9 14 0.00031 37.0 2.0 18 259-276 338-355 (367)
14 KOG0151|consensus 41.5 19 0.00041 39.4 2.5 16 98-113 561-576 (877)
15 PF08648 DUF1777: Protein of u 39.6 16 0.00034 32.2 1.3 6 259-264 73-78 (180)
16 KOG1567|consensus 39.5 25 0.00054 34.9 2.8 61 21-93 186-250 (344)
17 KOG4676|consensus 30.6 21 0.00045 36.8 0.7 14 243-256 351-364 (479)
18 KOG0151|consensus 29.0 28 0.0006 38.3 1.3 12 101-112 523-534 (877)
19 KOG0794|consensus 24.8 59 0.0013 31.5 2.5 37 95-131 191-228 (264)
20 smart00777 Mad3_BUB1_I Mad3/BU 23.8 1.9E+02 0.004 24.9 5.2 28 93-121 63-90 (125)
21 PTZ00398 phosphoenolpyruvate c 22.9 1.1E+02 0.0024 34.7 4.5 94 74-169 336-474 (974)
22 PRK00009 phosphoenolpyruvate c 22.7 1.3E+02 0.0029 33.8 5.1 87 81-169 301-411 (911)
23 PRK10072 putative transcriptio 21.0 74 0.0016 26.1 2.1 55 35-91 38-95 (96)
24 PF13646 HEAT_2: HEAT repeats; 21.0 1.9E+02 0.0042 21.1 4.2 39 87-126 4-42 (88)
25 KOG0113|consensus 20.1 91 0.002 31.2 2.8 9 159-167 176-184 (335)
No 1
>KOG2889|consensus
Probab=100.00 E-value=1.1e-69 Score=480.59 Aligned_cols=201 Identities=63% Similarity=1.016 Sum_probs=195.7
Q ss_pred CCCcccccccccCCCCCccchHHHHHHHccchhhHHHHhhhcchHHHHHHHhhccccccccCCCCCCCchhhhhhhhccc
Q psy1424 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQI 80 (305)
Q Consensus 1 man~T~~~a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~Lt~etvVDeiveV~~iGg~~ggn~~PS~F~CLL~KLlqL 80 (305)
|||+|.+.|+++||+|||++++||+|++|++|.|||++|||||++.|||.++++.|+||.||||++|+||+||.+|||||
T Consensus 1 manry~~~a~~~retnpq~lv~KiiRsri~~sv~wke~cfgl~aellvdkam~l~~lgg~yGgn~kpt~fKOG~lkmLqi 80 (204)
T KOG2889|consen 1 MANRYKKIARMTRETNPQFLVEKIIRSRIYDSVYWKEQCFGLTAELLVDKAMELLYLGGKYGGNSKPTPFLCLDLKMLQI 80 (204)
T ss_pred CcchhhhHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhhcchhHHHhcchHHHHHHHHHhcCCCCCccHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHHHHHHhhcCccccC
Q psy1424 81 QPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDV 160 (305)
Q Consensus 81 ~Pt~eqI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEfVd~LLtedr~~dt 160 (305)
+|+++|+.+||.+.+|||||||||||+||++...++|++|||+|+|||||++++.+|++.+||||||||+||+++++|+|
T Consensus 81 qpeK~i~~efi~~~~fkY~ralgafYlRLt~~~~~~y~ylepl~nDyRKir~~~~~g~~~l~ylDe~iDdLL~~~r~cdI 160 (204)
T KOG2889|consen 81 QPEKEIGSEFIMNHDFKYVRALGAFYLRLTGTDVDVYKYLEPLLNDYRKIRVVNGQGNRTLMYLDEVIDDLLNKSRICDI 160 (204)
T ss_pred CCCcccchHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhcCCCceeeeeHHHHHHHHhhhcceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhHhhhCCCcccccccccccccCCCCCccchhh
Q psy1424 161 ILPRIQKRHVLEENNEIEVKVSILDDDIDDGGSSSSEDENE 201 (305)
Q Consensus 161 iLPRIpkR~vLE~~~~LepR~S~Le~~~~~~~~~~~~~~~~ 201 (305)
.|||+++||+||++++|+||+|.|++|++|+++++++++.+
T Consensus 161 ~Lprl~kr~~le~~~~lep~~s~ld~d~~~~e~~~~~e~~d 201 (204)
T KOG2889|consen 161 HLPRLDKRWQLEELDLLEPRKSSLDEDDDDEESSEEEEEED 201 (204)
T ss_pred ccchhhhhhhhhhhccccccccccccchhhhhhhhhhhhhh
Confidence 99999999999999999999999999999988766555433
No 2
>PF03371 PRP38: PRP38 family; InterPro: IPR005037 Members of this family are related to the pre mRNA splicing factor PRP38 from yeast [], therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation [].
Probab=100.00 E-value=1.2e-64 Score=446.24 Aligned_cols=169 Identities=49% Similarity=0.952 Sum_probs=164.3
Q ss_pred cccccCCCCCccchHHHHHHHccchhhHHHHhhhcch-HHHHHHHhh-ccccccccCCCCCCCchhhhhhhhcccCCCHH
Q psy1424 8 DAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSA-ELLVDKAME-LRYIGGVFGGNIKPTPFLCLILKMLQIQPEKD 85 (305)
Q Consensus 8 ~a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~Lt~-etvVDeive-V~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt~e 85 (305)
+|+++||+|||+|||+|+|+||++|.|||+.||+++. ++|||+|++ |+|+|||+||+++||+|||||||||||+|+++
T Consensus 2 ~~~~~~g~~~~~~i~~ilr~~I~~S~Y~K~~l~~l~~~~~vvd~i~~~v~~ig~~~~g~~~Ps~f~CLL~KLl~l~pt~~ 81 (172)
T PF03371_consen 2 NALQIHGNNPTFNIEKILRQNIYNSEYYKENLFGLSTFETVVDEIYEIVRYIGPWYGGNRRPSPFFCLLYKLLQLRPTKE 81 (172)
T ss_pred CCcccCCCCchhcccHHHHHHHhcCHHHHHHhhcCCcHHHHHHHHHHHhhhhhcccCCCCCCchHHHHHHHHHhcccCHH
Confidence 5789999999999999999999999999999999988 999999988 99999999999999999999999999999999
Q ss_pred HHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHHHHHHhhcCccccCCCCCC
Q psy1424 86 IVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165 (305)
Q Consensus 86 qI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEfVd~LLtedr~~dtiLPRI 165 (305)
||.+||+|.+||||||||||||||+++|.++|+||||||+|||||++++.+|. ++|||||||++||++++||||+||||
T Consensus 82 ~v~~~l~~~d~kYiralg~lYlR~~~~p~~~~~~lep~l~D~rkl~~~~~~~~-~~~~~de~vd~LL~~~~~~~~~LPrl 160 (172)
T PF03371_consen 82 QVKELLNNDDFKYIRALGFLYLRYVGPPEELYKWLEPYLNDYRKLRVRNDGGD-KITHMDEFVDDLLTKDRYCGTILPRL 160 (172)
T ss_pred HHHHHHcCCCccHHHHHHHHHheeeCCHHHHHHHHHHHhccceeeeeecCCCc-eeEEHHHHHHHHhhhCcEecccCCCC
Confidence 99999999999999999999999999999999999999999999999887665 99999999999999999999999999
Q ss_pred CchhhHhhhCCC
Q psy1424 166 QKRHVLEENNEI 177 (305)
Q Consensus 166 pkR~vLE~~~~L 177 (305)
|+|.++|+.|+|
T Consensus 161 p~r~~~e~~~~~ 172 (172)
T PF03371_consen 161 PKRIVLEIDDEL 172 (172)
T ss_pred CchHHHHhhccC
Confidence 999999999986
No 3
>KOG2888|consensus
Probab=100.00 E-value=1e-48 Score=373.64 Aligned_cols=171 Identities=19% Similarity=0.397 Sum_probs=156.7
Q ss_pred ccccCCCCCccchHHHHHHHccchhhHHHHhhhc-chHHHHHHHh-hccccccccCCC-------------CCC------
Q psy1424 9 AKSVRGTNPQYLIEKIIRARIYDSKYWKEECFAL-SAELLVDKAM-ELRYIGGVFGGN-------------IKP------ 67 (305)
Q Consensus 9 a~~ihG~npq~lIekIlR~rI~~S~YwKe~cf~L-t~etvVDeiv-eV~~iGg~~ggn-------------~~P------ 67 (305)
.+++||+..++|||++|..||++|.|||.+||.| |+++|||+|+ +|+|++||.+|+ +.+
T Consensus 46 tlp~wGne~tmnLn~lil~NIlsS~YfKv~LyelktyhevideIyyqVkHvEPWekGsrkt~gqtgmCggvRGvgaggiv 125 (453)
T KOG2888|consen 46 TLPVWGNEVTMNLNTLILENILSSYYFKVNLYELKTYHEVIDEIYYQVKHVEPWEKGSRKTQGQTGMCGGVRGVGAGGIV 125 (453)
T ss_pred ccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccCchhcCCccccccccccccccccCcCcch
Confidence 4589999999999999999999999999999977 8999999995 599999997554 234
Q ss_pred CchhhhhhhhcccCCCHHHHHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhcchhhhhccCCCCeeeeeHHHH
Q psy1424 68 TPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEY 147 (305)
Q Consensus 68 S~F~CLL~KLlqL~Pt~eqI~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~DyRKLr~~~~~G~~~l~~mDEf 147 (305)
|+++|||||||+|++|.+||.+||+|.|++|||||||||||||.+|.+||.||||||+|.+.|.+++..| .+||||++
T Consensus 126 STAyCLLYklftlklTrKQ~~gllnhtdSpYIRalGFmYiRYtqpp~dLw~WyEpyldDdeeidpkaggG--~vmTiGqm 203 (453)
T KOG2888|consen 126 STAYCLLYKLFTLKLTRKQLIGLLNHTDSPYIRALGFMYIRYTQPPADLWDWYEPYLDDDEEIDPKAGGG--DVMTIGQM 203 (453)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHhhcCCchhhhhheeeEEeecCChhHHHHHhhhhccchhhcCCcCCCC--ceeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976444 89999999
Q ss_pred HHHHhhcCccccCCCCCCCchhhHhhhCCCcccc
Q psy1424 148 IDQLLREERMCDVILPRIQKRHVLEENNEIEVKV 181 (305)
Q Consensus 148 Vd~LLtedr~~dtiLPRIpkR~vLE~~~~LepR~ 181 (305)
|..||++..||+|.|||||++.+-.....|+.+.
T Consensus 204 vr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~ 237 (453)
T KOG2888|consen 204 VRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERK 237 (453)
T ss_pred HHHHHhhhhHHhccCCCCCchHHHHHHHHHHhcc
Confidence 9999999999999999999998776666665444
No 4
>PF12871 PRP38_assoc: Pre-mRNA-splicing factor 38-associated hydrophilic C-term; InterPro: IPR024767 This entry represents a hydrophilic domain found mainly at the C terminus of plant and metazoan pre-mRNA-splicing factor 38 proteins. The function of the domain is not known.
Probab=93.17 E-value=0.068 Score=43.57 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=14.6
Q ss_pred ccccccccccccCCCCCc
Q psy1424 179 VKVSILDDDIDDGGSSSS 196 (305)
Q Consensus 179 pR~S~Le~~~~~~~~~~~ 196 (305)
|++++|+++|+++++++|
T Consensus 1 p~~s~l~~d~~~~~~~~E 18 (97)
T PF12871_consen 1 PRVSALEEDLDDEESGEE 18 (97)
T ss_pred Cccccccccccccccccc
Confidence 789999999988876544
No 5
>KOG0835|consensus
Probab=89.87 E-value=2.6 Score=42.02 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCCchhhhhhhhcccCCCHHHHHH---HhhC--------CCchhHHHHHHhHH
Q psy1424 66 KPTPFLCLILKMLQIQPEKDIVVE---FIKN--------EEFKYVRALGAYYM 107 (305)
Q Consensus 66 ~PS~F~CLL~KLlqL~Pt~eqI~~---~L~~--------~d~KYIRALG~LYL 107 (305)
-|.-+|--.+.-||+-|..++++. |.+. -..+-+.|+|+.||
T Consensus 140 hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyL 192 (367)
T KOG0835|consen 140 HPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYL 192 (367)
T ss_pred ccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHH
Confidence 477888878888899999866654 3331 26788999999997
No 6
>KOG1847|consensus
Probab=79.04 E-value=0.81 Score=49.04 Aligned_cols=42 Identities=36% Similarity=0.549 Sum_probs=25.3
Q ss_pred hhcccccchHHHHhhhcCChHHHhhhhc-CCCCCCCcccchhh
Q psy1424 235 RRYRSEKSTKERVRERSRSKERDRRHRS-KSPRHKDRDYDRDR 276 (305)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 276 (305)
|.+-+|+|++.|-||--.+..+-+-|+| |--+|++++-|+|-
T Consensus 748 r~rsRsrSpr~r~re~~s~~k~~rhhRS~~~~r~R~sSrd~H~ 790 (878)
T KOG1847|consen 748 RGRSRSRSPRHRKREDYSKDKRSRHHRSRKHERHRDSSRDEHH 790 (878)
T ss_pred ccccccCCchhhhhhhhccccccccccCcccccccccccCchh
Confidence 5556666777766665444445555665 33457777777764
No 7
>KOG0796|consensus
Probab=78.88 E-value=1.5 Score=43.32 Aligned_cols=19 Identities=42% Similarity=0.636 Sum_probs=8.4
Q ss_pred ccccCCCCCCCCccchhhh
Q psy1424 218 HSSKYDSHHRDPDKERDRR 236 (305)
Q Consensus 218 ~~~~~~~~~~d~~~~~~~~ 236 (305)
+..-+++++||.+|.+|+.
T Consensus 267 r~rd~~rr~rd~~r~~~~~ 285 (319)
T KOG0796|consen 267 RSRDRDRRSRDRSRERDRH 285 (319)
T ss_pred ccccccccCCccccccccc
Confidence 3333334445555544444
No 8
>KOG0147|consensus
Probab=69.85 E-value=1.7 Score=45.46 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=5.5
Q ss_pred hHHHhhhhcCC
Q psy1424 254 KERDRRHRSKS 264 (305)
Q Consensus 254 ~~~~~~~~~~~ 264 (305)
+.|++++..++
T Consensus 111 ~srDr~~~~~~ 121 (549)
T KOG0147|consen 111 SSRDRRRSDHS 121 (549)
T ss_pred hhcccccCCcc
Confidence 34555555544
No 9
>KOG4368|consensus
Probab=68.19 E-value=1.9 Score=45.83 Aligned_cols=54 Identities=30% Similarity=0.415 Sum_probs=30.3
Q ss_pred CCCCCCCCccchhhhcccccchH--HHHhhhcCChHHHhhhhcCCCCCCC---cccchhhhh
Q psy1424 222 YDSHHRDPDKERDRRYRSEKSTK--ERVRERSRSKERDRRHRSKSPRHKD---RDYDRDRYK 278 (305)
Q Consensus 222 ~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 278 (305)
.+.-|||+-|++-|-+..|.+.+ .+-+.++.+. .||+|+++-|.+ |+.+|.|-+
T Consensus 597 k~~e~RdrsrskSRSRSpS~~~S~~pr~~~rs~~r---SRsrS~s~S~SsSrSrs~SRsrS~ 655 (757)
T KOG4368|consen 597 KGQESRSRSRSKSRSRSPSRSNSRYPRSRSRSCSR---SRSRSRSRSRSSSRSRSQSRSRSK 655 (757)
T ss_pred ccccccccccccccCCCcccccCcCcccccccccc---cccccCCCCCCccccccCCccccc
Confidence 33447777666666555555444 3333333332 399999988754 444554443
No 10
>KOG0147|consensus
Probab=60.78 E-value=9.3 Score=40.23 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=4.3
Q ss_pred HHHHHHHHhh
Q psy1424 144 MDEYIDQLLR 153 (305)
Q Consensus 144 mDEfVd~LLt 153 (305)
|++.++.+|.
T Consensus 5 ~~~d~Ea~lE 14 (549)
T KOG0147|consen 5 LDSDIEAMLE 14 (549)
T ss_pred hhhHHHHHhh
Confidence 3444444443
No 11
>KOG3263|consensus
Probab=52.84 E-value=14 Score=34.12 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=6.2
Q ss_pred hhhhhhhcccCccC
Q psy1424 279 DYEREKYRSDRDRG 292 (305)
Q Consensus 279 ~~~~~~~~~~~~~~ 292 (305)
|+|+..-++-+.++
T Consensus 73 drErdR~R~~r~rs 86 (196)
T KOG3263|consen 73 DRERDRERKKRRRS 86 (196)
T ss_pred hhhhHHHHHhhhcc
Confidence 44444444444444
No 12
>KOG4676|consensus
Probab=50.59 E-value=6.1 Score=40.46 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=5.5
Q ss_pred cchHHHHHHHhh
Q psy1424 42 LSAELLVDKAME 53 (305)
Q Consensus 42 Lt~etvVDeive 53 (305)
||+-.+||.|+.
T Consensus 71 Ltntvfvdrali 82 (479)
T KOG4676|consen 71 LTNTVFVDRALI 82 (479)
T ss_pred hccceeeeeeEE
Confidence 344444455544
No 13
>KOG0835|consensus
Probab=44.85 E-value=14 Score=37.04 Aligned_cols=18 Identities=50% Similarity=0.743 Sum_probs=13.6
Q ss_pred hhhcCCCCCCCcccchhh
Q psy1424 259 RHRSKSPRHKDRDYDRDR 276 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (305)
||++.|+-|..++-+|+|
T Consensus 338 R~~srsrSrsg~~~sr~r 355 (367)
T KOG0835|consen 338 RHRSRSRSRSGRDSSRSR 355 (367)
T ss_pred hccccCCCCCCCCccccc
Confidence 777777777777777777
No 14
>KOG0151|consensus
Probab=41.47 E-value=19 Score=39.44 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=8.2
Q ss_pred hHHHHHHhHHhhccch
Q psy1424 98 YVRALGAYYMRLTGSS 113 (305)
Q Consensus 98 YIRALG~LYLRl~~~p 113 (305)
||--|...+|+++..+
T Consensus 561 ~l~~l~~~Flg~~~~~ 576 (877)
T KOG0151|consen 561 FLIGLQNTFLGLNNIV 576 (877)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 4445555555555443
No 15
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=39.59 E-value=16 Score=32.16 Aligned_cols=6 Identities=83% Similarity=1.248 Sum_probs=2.3
Q ss_pred hhhcCC
Q psy1424 259 RHRSKS 264 (305)
Q Consensus 259 ~~~~~~ 264 (305)
+|++.+
T Consensus 73 ~~rs~s 78 (180)
T PF08648_consen 73 RHRSRS 78 (180)
T ss_pred cccccc
Confidence 344333
No 16
>KOG1567|consensus
Probab=39.50 E-value=25 Score=34.87 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=39.7
Q ss_pred hHHHHHHHccchhhHHHHh---hhcch-HHHHHHHhhccccccccCCCCCCCchhhhhhhhcccCCCHHHHHHHhhC
Q psy1424 21 IEKIIRARIYDSKYWKEEC---FALSA-ELLVDKAMELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKN 93 (305)
Q Consensus 21 IekIlR~rI~~S~YwKe~c---f~Lt~-etvVDeiveV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt~eqI~~~L~~ 93 (305)
||-|.-.=-+.|.||-..- .|||+ .++| . +.- | -++-|.|||+..|+-+|+.+.|.+.|..
T Consensus 186 vEGIFFSgsFasIFWLKKRGlMPGLTfSNELI----s-rde-----g--lh~dFacll~~~l~~kp~~~ri~eII~e 250 (344)
T KOG1567|consen 186 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELI----S-RDE-----G--LHCDFACLLFSHLKKKPNEERIEEIITE 250 (344)
T ss_pred HhhhhcccchhhhhhhhhcCCCCccccchhhh----h-hcc-----C--CcccHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4444555556677775433 35554 2221 1 111 1 3689999999999999999999998863
No 17
>KOG4676|consensus
Probab=30.62 E-value=21 Score=36.75 Aligned_cols=14 Identities=57% Similarity=0.881 Sum_probs=7.7
Q ss_pred hHHHHhhhcCChHH
Q psy1424 243 TKERVRERSRSKER 256 (305)
Q Consensus 243 ~~~~~~~~~~~~~~ 256 (305)
.++|-+.||+|..|
T Consensus 351 srerrrRRSrSrsR 364 (479)
T KOG4676|consen 351 SRERRRRRSRSRSR 364 (479)
T ss_pred hhhhhhhhcccccc
Confidence 55555556665443
No 18
>KOG0151|consensus
Probab=29.00 E-value=28 Score=38.27 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=6.0
Q ss_pred HHHHhHHhhccc
Q psy1424 101 ALGAYYMRLTGS 112 (305)
Q Consensus 101 ALG~LYLRl~~~ 112 (305)
.|+.||.++.+.
T Consensus 523 ~l~~~yr~I~gR 534 (877)
T KOG0151|consen 523 DLNDLYRSIGGR 534 (877)
T ss_pred HHHHHHHhccch
Confidence 345555555444
No 19
>KOG0794|consensus
Probab=24.79 E-value=59 Score=31.46 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=33.9
Q ss_pred CchhHHHHHHhHHhhccchhHH-HHHhhhhhhcchhhh
Q psy1424 95 EFKYVRALGAYYMRLTGSSVDC-YKYLEPLFADSRKLR 131 (305)
Q Consensus 95 d~KYIRALG~LYLRl~~~p~dv-y~~LEPyl~DyRKLr 131 (305)
--||+.|||++||-.+..-.++ -.||..+.-|..|+.
T Consensus 191 ~PPh~IalAcl~Ia~~~~~k~~~~~w~~el~vD~ekV~ 228 (264)
T KOG0794|consen 191 YPPHQIALACLYIACVIDEKDIPKAWFAELSVDMEKVK 228 (264)
T ss_pred cCHHHHHHHHHHHHHhhcCCChHHHHHHHHhccHHHHH
Confidence 4589999999999999999999 899999999999984
No 20
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.76 E-value=1.9e+02 Score=24.85 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCchhHHHHHHhHHhhccchhHHHHHhh
Q psy1424 93 NEEFKYVRALGAYYMRLTGSSVDCYKYLE 121 (305)
Q Consensus 93 ~~d~KYIRALG~LYLRl~~~p~dvy~~LE 121 (305)
.+|-.||+. .+.|++++..|.++|++|.
T Consensus 63 knD~RyLki-Wi~ya~~~~dp~~if~~L~ 90 (125)
T smart00777 63 KNDPRYLKI-WLKYADNCDEPRELFQFLY 90 (125)
T ss_pred cCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Confidence 358889874 5689999999999999885
No 21
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=22.93 E-value=1.1e+02 Score=34.69 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=60.1
Q ss_pred hhhhcccCCCHHHHHHHhhC--------------------------CCchhHHHHHHhHHhhccch--------------
Q psy1424 74 ILKMLQIQPEKDIVVEFIKN--------------------------EEFKYVRALGAYYMRLTGSS-------------- 113 (305)
Q Consensus 74 L~KLlqL~Pt~eqI~~~L~~--------------------------~d~KYIRALG~LYLRl~~~p-------------- 113 (305)
|.+-|.+....+.+..+++. .+=||=++|..+.-||...-
T Consensus 336 L~~~LS~s~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~ 415 (974)
T PTZ00398 336 LMYDLPLKSCTEKLKEYVDNLPDEISFYITDKDATYLLREFMGFIPEKELYRRALLHVRAKLIATRDYYKDLISNHSVDP 415 (974)
T ss_pred HHHhcCCCCCCHHHHHHHhhhhhhhccccccchhhhhhhhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 34456666666777766554 25789999999999983321
Q ss_pred ----hHHHHHhhhhhhcchhhhhccC-CCCeeeeeHHHHHHHHhhcCccccCCCCCCCchh
Q psy1424 114 ----VDCYKYLEPLFADSRKLRFQNR-QGAFEVIHMDEYIDQLLREERMCDVILPRIQKRH 169 (305)
Q Consensus 114 ----~dvy~~LEPyl~DyRKLr~~~~-~G~~~l~~mDEfVd~LLtedr~~dtiLPRIpkR~ 169 (305)
.++|.-.+.|+.|-.-+.-+.. .| .-.-.+..+.+|+..-..||..|=.|-.|+
T Consensus 416 ~~~~~~~Y~~~~ell~dL~~i~~SL~~~g--~~~lA~g~L~dlir~v~~FGfhLa~LDIRQ 474 (974)
T PTZ00398 416 EFRRELAYHSTDEILEPLIECYNSLEDVG--NTILARGRLLDVIRQVKTFGLHLMKLDIRQ 474 (974)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHCC--ChhhHhhHHHHHHHHHHHhCcccccccccc
Confidence 2234444444555444432211 23 224456778889999999999999998885
No 22
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=22.73 E-value=1.3e+02 Score=33.77 Aligned_cols=87 Identities=24% Similarity=0.238 Sum_probs=59.5
Q ss_pred CCCHHHHHHHhh--------CCCchhHHHHHHhHHhhccch---------------hHHHHHhhhhhhcchhhhhccC-C
Q psy1424 81 QPEKDIVVEFIK--------NEEFKYVRALGAYYMRLTGSS---------------VDCYKYLEPLFADSRKLRFQNR-Q 136 (305)
Q Consensus 81 ~Pt~eqI~~~L~--------~~d~KYIRALG~LYLRl~~~p---------------~dvy~~LEPyl~DyRKLr~~~~-~ 136 (305)
.+..+.+..+.+ +.+=||=++|+.++-||...- .+.|.--+.|+.|-..+.-+.. .
T Consensus 301 ~~~s~~l~~l~~~~~~~~~~~~~EPYR~~l~~i~~rL~~t~~~~~~~~~~~~~~~~~~~Y~~~~ell~dL~~i~~SL~~~ 380 (911)
T PRK00009 301 VEVSPELRALAGASPDQSPHRRDEPYRRALKGIRARLAATADWLEARLAGEEAPPPADPYASAEELLADLDLIYQSLRAC 380 (911)
T ss_pred CCCCHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCcccccCCCHHHHHHHHHHHHHHHHhC
Confidence 444455555544 347899999999999995332 2346666677777666644332 2
Q ss_pred CCeeeeeHHHHHHHHhhcCccccCCCCCCCchh
Q psy1424 137 GAFEVIHMDEYIDQLLREERMCDVILPRIQKRH 169 (305)
Q Consensus 137 G~~~l~~mDEfVd~LLtedr~~dtiLPRIpkR~ 169 (305)
| .-..-+..+..|+..-..||..|=.|-.|+
T Consensus 381 ~--~~~~A~~~L~~lir~v~~FGfhla~LDiRQ 411 (911)
T PRK00009 381 G--MGILANGRLLDLLRRVEVFGFHLARLDIRQ 411 (911)
T ss_pred C--CccchhhHHHHHHHHHHhhCcccCCccccc
Confidence 2 224447788899999999999999998775
No 23
>PRK10072 putative transcriptional regulator; Provisional
Probab=21.02 E-value=74 Score=26.10 Aligned_cols=55 Identities=9% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHhh--hcchHHHHHHH-hhccccccccCCCCCCCchhhhhhhhcccCCCHHHHHHHh
Q psy1424 35 WKEECF--ALSAELLVDKA-MELRYIGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFI 91 (305)
Q Consensus 35 wKe~cf--~Lt~etvVDei-veV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt~eqI~~~L 91 (305)
.|+.+. ++|-..+.+.+ +...-|+.|-.|.+.|+.-...|++++...| +++.++.
T Consensus 38 ik~LR~~~glTQ~elA~~lGvS~~TVs~WE~G~r~P~~~~l~Ll~~L~~~P--~~~~~l~ 95 (96)
T PRK10072 38 FEQLRKGTGLKIDDFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANP--ALSKQLM 95 (96)
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhhCH--HHHHHHh
Confidence 455443 67777777666 5566666676676788887788999999999 5655543
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=20.96 E-value=1.9e+02 Score=21.12 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=20.5
Q ss_pred HHHHhhCCCchhHHHHHHhHHhhccchhHHHHHhhhhhhc
Q psy1424 87 VVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFAD 126 (305)
Q Consensus 87 I~~~L~~~d~KYIRALG~LYLRl~~~p~dvy~~LEPyl~D 126 (305)
+...|.++.++++|.-++..|--.+.+ ++...|-.+++|
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d 42 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGELGDP-EAIPALIELLKD 42 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHcC
Confidence 444554556666666666666544433 344444444444
No 25
>KOG0113|consensus
Probab=20.14 E-value=91 Score=31.16 Aligned_cols=9 Identities=44% Similarity=0.276 Sum_probs=4.0
Q ss_pred cCCCCCCCc
Q psy1424 159 DVILPRIQK 167 (305)
Q Consensus 159 dtiLPRIpk 167 (305)
|+-..|..+
T Consensus 176 DvERgRTvk 184 (335)
T KOG0113|consen 176 DVERGRTVK 184 (335)
T ss_pred Eeccccccc
Confidence 444444443
Done!