Query psy1424
Match_columns 305
No_of_seqs 158 out of 272
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:57:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 78.4 0.7 2.4E-05 44.8 1.5 21 72-92 104-124 (437)
2 3pgw_S U1-70K; protein-RNA com 76.3 1.3 4.4E-05 42.9 2.7 13 111-123 114-126 (437)
3 2kxe_A DNA polymerase II small 18.3 28 0.00095 26.6 0.2 16 142-157 2-17 (75)
4 4aez_C MAD3, mitotic spindle c 17.4 1.3E+02 0.0046 26.9 4.5 28 93-121 114-141 (223)
5 1r69_A Repressor protein CI; g 15.6 63 0.0021 21.4 1.5 43 41-83 14-57 (69)
6 1g70_B RSG-1.2 peptide; peptid 12.1 84 0.0029 19.3 1.1 16 235-250 3-18 (26)
7 4a1g_A Mitotic checkpoint seri 10.4 2.6E+02 0.0089 23.5 4.1 34 87-121 55-92 (152)
8 3fmy_A HTH-type transcriptiona 9.5 1E+02 0.0034 21.6 1.0 43 41-83 24-67 (73)
9 1zug_A Phage 434 CRO protein; 9.4 98 0.0034 20.5 0.9 44 41-84 16-60 (71)
10 2i4k_A Sorting nexin-1, SNX1; 8.1 84 0.0029 24.3 0.1 42 144-185 49-102 (128)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=78.41 E-value=0.7 Score=44.78 Aligned_cols=21 Identities=5% Similarity=0.082 Sum_probs=10.1
Q ss_pred hhhhhhcccCCCHHHHHHHhh
Q psy1424 72 CLILKMLQIQPEKDIVVEFIK 92 (305)
Q Consensus 72 CLL~KLlqL~Pt~eqI~~~L~ 92 (305)
+|.+.=|-...+.++|..++.
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~ 124 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFE 124 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHH
Confidence 344444444455555555443
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=76.32 E-value=1.3 Score=42.90 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=8.1
Q ss_pred cchhHHHHHhhhh
Q psy1424 111 GSSVDCYKYLEPL 123 (305)
Q Consensus 111 ~~p~dvy~~LEPy 123 (305)
....+|..+|..|
T Consensus 114 ~te~~L~~~F~~~ 126 (437)
T 3pgw_S 114 TTESKLRREFEVY 126 (437)
T ss_pred CCHHHHHHHHHHc
Confidence 3456677777665
No 3
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=18.33 E-value=28 Score=26.57 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=12.3
Q ss_pred eeHHHHHHHHhhcCcc
Q psy1424 142 IHMDEYIDQLLREERM 157 (305)
Q Consensus 142 ~~mDEfVd~LLtedr~ 157 (305)
.||||||.+|+...+.
T Consensus 2 ~~MdelVk~L~~n~YL 17 (75)
T 2kxe_A 2 SHMDEFVKGLMKNGYL 17 (75)
T ss_dssp --CCHHHHHHHTTTCE
T ss_pred ccHHHHHHHHHHCCce
Confidence 4899999999988764
No 4
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=17.43 E-value=1.3e+02 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.534 Sum_probs=23.6
Q ss_pred CCCchhHHHHHHhHHhhccchhHHHHHhh
Q psy1424 93 NEEFKYVRALGAYYMRLTGSSVDCYKYLE 121 (305)
Q Consensus 93 ~~d~KYIRALG~LYLRl~~~p~dvy~~LE 121 (305)
.+|-.||+. .+.|+.++..|.++|.+|.
T Consensus 114 knD~RyLkl-Wl~Ya~~~~~p~~if~~L~ 141 (223)
T 4aez_C 114 KDDVRYLRI-WMQYVNYIDEPVELFSFLA 141 (223)
T ss_dssp TTCHHHHHH-HHHHHTTCSCHHHHHHHHH
T ss_pred cCCHHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 358889985 5689999999999999885
No 5
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=15.57 E-value=63 Score=21.42 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred hcchHHHHHHH-hhccccccccCCCCCCCchhhhhhhhcccCCC
Q psy1424 41 ALSAELLVDKA-MELRYIGGVFGGNIKPTPFLCLILKMLQIQPE 83 (305)
Q Consensus 41 ~Lt~etvVDei-veV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt 83 (305)
++|..++.+.+ +....+.-|-.|...|+..+.-+.+.|.+.|+
T Consensus 14 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~la~~l~~~~~ 57 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVD 57 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCchHHHHHHHHHCcCHH
Confidence 56777776665 44444444444444455546666677766554
No 6
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=12.09 E-value=84 Score=19.32 Aligned_cols=16 Identities=50% Similarity=0.530 Sum_probs=11.1
Q ss_pred hhcccccchHHHHhhh
Q psy1424 235 RRYRSEKSTKERVRER 250 (305)
Q Consensus 235 ~~~~~~~~~~~~~~~~ 250 (305)
|++||.+|..+|.|.|
T Consensus 3 rrrgsrpsgaerrrrr 18 (26)
T 1g70_B 3 RRRGSRPSGAERRRRR 18 (26)
T ss_pred cccCCCCchHHHHHHH
Confidence 4578888888775544
No 7
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=10.36 E-value=2.6e+02 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.324 Sum_probs=26.5
Q ss_pred HHHHhh----CCCchhHHHHHHhHHhhccchhHHHHHhh
Q psy1424 87 VVEFIK----NEEFKYVRALGAYYMRLTGSSVDCYKYLE 121 (305)
Q Consensus 87 I~~~L~----~~d~KYIRALG~LYLRl~~~p~dvy~~LE 121 (305)
+..|.+ .+|-.||+. .+.|+.++..|.++|++|.
T Consensus 55 ~~~f~~~~~YknD~RyLkl-Wl~ya~~~~dp~~if~~L~ 92 (152)
T 4a1g_A 55 MKEFLDKKKYHNDPRFISY-CLKFAEYNSDLHQFFEFLY 92 (152)
T ss_dssp HHHHTTCGGGTTCHHHHHH-HHHHHTTBSCHHHHHHHHH
T ss_pred HHHhcccccccCCHHHHHH-HHHHHHhcCCHHHHHHHHH
Confidence 445544 358889885 5689999999999999884
No 8
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=9.54 E-value=1e+02 Score=21.56 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.9
Q ss_pred hcchHHHHHHH-hhccccccccCCCCCCCchhhhhhhhcccCCC
Q psy1424 41 ALSAELLVDKA-MELRYIGGVFGGNIKPTPFLCLILKMLQIQPE 83 (305)
Q Consensus 41 ~Lt~etvVDei-veV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt 83 (305)
++|-.++-+.+ +....+.-|-.|...|+.....+.++|...|+
T Consensus 24 gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~~l~~~l~~~p~ 67 (73)
T 3fmy_A 24 SLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTIKLLRVLDKHPE 67 (73)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHHHHHHHHHHCGG
T ss_pred CCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHCCCHH
Confidence 78888877776 44455555444555687776677777777665
No 9
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=9.44 E-value=98 Score=20.53 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=0.0
Q ss_pred hcchHHHHHHH-hhccccccccCCCCCCCchhhhhhhhcccCCCH
Q psy1424 41 ALSAELLVDKA-MELRYIGGVFGGNIKPTPFLCLILKMLQIQPEK 84 (305)
Q Consensus 41 ~Lt~etvVDei-veV~~iGg~~ggn~~PS~F~CLL~KLlqL~Pt~ 84 (305)
++|..++-+.+ +....+.-|-.|...|+..+..+.+.|.+.|++
T Consensus 16 glsq~~lA~~~gis~~~i~~~e~g~~~~~~~l~~i~~~l~~~~~~ 60 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVW 60 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCChHHHHHHHHHHCCCHHH
No 10
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=8.10 E-value=84 Score=24.29 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCccccCCCCCCCchhhHh------------hhCCCcccccccc
Q psy1424 144 MDEYIDQLLREERMCDVILPRIQKRHVLE------------ENNEIEVKVSILD 185 (305)
Q Consensus 144 mDEfVd~LLtedr~~dtiLPRIpkR~vLE------------~~~~LepR~S~Le 185 (305)
+..+-+.|...--..++++|.+|.+.++- ....++.|...||
T Consensus 49 F~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~~~~~~~~~~~ie~Rr~~Le 102 (128)
T 2i4k_A 49 FLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALE 102 (128)
T ss_dssp HHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCCCSCCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhhcCCCCCCHHHHHHHHHHHH
Done!