Your job contains 1 sequence.
>psy1424
MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV
FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL
EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK
VSILDDDIDDGGSSSSEDENEEAGEVYDKNRMDVDTYHSSKYDSHHRDPDKERDRRYRSE
KSTKERVRERSRSKERDRRHRSKSPRHKDRDYDRDRYKDYEREKYRSDRDRGDRRDRGDR
DRRHR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1424
(305 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0050342 - symbol:Prp38 "pre-mRNA processing factor... 806 6.5e-83 2
UNIPROTKB|Q0P5I6 - symbol:PRPF38A "Pre-mRNA-splicing fact... 761 1.2e-77 2
UNIPROTKB|Q8NAV1 - symbol:PRPF38A "Pre-mRNA-splicing fact... 761 1.2e-77 2
ZFIN|ZDB-GENE-040801-225 - symbol:prpf38a "PRP38 pre-mRNA... 755 6.6e-77 2
MGI|MGI:1916962 - symbol:Prpf38a "PRP38 pre-mRNA processi... 742 1.2e-75 2
WB|WBGene00008380 - symbol:prp-38 species:6239 "Caenorhab... 677 8.7e-69 2
TAIR|locus:2064811 - symbol:AT2G40650 species:3702 "Arabi... 607 2.0e-61 2
GENEDB_PFALCIPARUM|PF11_0336 - symbol:PF11_0336 "hypothet... 544 3.8e-56 2
UNIPROTKB|Q8II38 - symbol:PF11_0336 "Pre-mRNA splicing fa... 544 3.8e-56 2
DICTYBASE|DDB_G0274361 - symbol:prpf38a "putative U4/U6.U... 448 7.6e-46 2
ASPGD|ASPL0000077881 - symbol:AN4672 species:162425 "Emer... 243 4.0e-39 2
POMBASE|SPBC19C2.08 - symbol:prp38 "U4/U6 x U5 tri-snRNP ... 400 3.0e-37 1
UNIPROTKB|G4N721 - symbol:MGG_03636 "Pre-mRNA-splicing fa... 375 1.3e-34 1
CGD|CAL0000644 - symbol:FGR16 species:5476 "Candida albic... 242 1.7e-20 1
UNIPROTKB|Q59WJ8 - symbol:FGR16 "Potential spliceosomal U... 242 1.7e-20 1
TAIR|locus:2169160 - symbol:ATSRL1 species:3702 "Arabidop... 119 2.8e-05 2
WB|WBGene00022434 - symbol:Y108G3AL.2 species:6239 "Caeno... 109 0.00079 1
>FB|FBgn0050342 [details] [associations]
symbol:Prp38 "pre-mRNA processing factor 38" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;IMP] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0010389 "regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] Pfam:PF03371 EMBL:AE013599 GO:GO:0043234
GO:GO:0010389 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GeneTree:ENSGT00700000104035 eggNOG:NOG241318 KO:K12849
InterPro:IPR005037 PANTHER:PTHR23142 EMBL:AY118843
RefSeq:NP_610463.2 UniGene:Dm.14383 IntAct:Q7JVL3
EnsemblMetazoa:FBtr0088582 GeneID:35934 KEGG:dme:Dmel_CG30342
UCSC:CG30342-RA CTD:35934 FlyBase:FBgn0050342 InParanoid:Q7JVL3
OMA:NVHGTNP OrthoDB:EOG400019 GenomeRNAi:35934 NextBio:795924
Uniprot:Q7JVL3
Length = 330
Score = 806 (288.8 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 148/181 (81%), Positives = 171/181 (94%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVK+AK+V GTNPQYLIEKIIR+RIYDSKYWKE+CFAL+AELLVDKAMELR++GGV
Sbjct: 1 MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPT FLCL LKMLQIQPEKDIVVEFIKNEEFKYVRALGA+Y+RLTG+++DCYKYL
Sbjct: 61 YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D+RKLR QNR G FE+++MDEYID+LLR +R+CD+ILPRIQKR +LEENNEIE K
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180
Query: 181 V 181
V
Sbjct: 181 V 181
Score = 44 (20.5 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 208 DKNRMDVDTYHS---SKYDSHHRDPDKERDRR 236
D++R D + ++D RD ERDRR
Sbjct: 297 DRDRRDRERERERDRGRHDQRERDSRGERDRR 328
Score = 43 (20.2 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 207 YDKNRMDV---DTYHSSKYDSHHRDP--DKERDRR 236
YD+ R V DT H+ YD + D+ER+R+
Sbjct: 251 YDRQRNRVRNRDT-HNEDYDRRQNNGRHDRERERQ 284
Score = 40 (19.1 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 208 DKNRMDVDTYHSSKYDSHHRDPDKERDR 235
++ R D D+ + D D+ER+R
Sbjct: 280 ERERQDRDSIRERERDGDRDRRDRERER 307
>UNIPROTKB|Q0P5I6 [details] [associations]
symbol:PRPF38A "Pre-mRNA-splicing factor 38A" species:9913
"Bos taurus" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] Pfam:PF03371 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GeneTree:ENSGT00700000104035 EMBL:BC119992
IPI:IPI00716721 RefSeq:NP_001068775.1 UniGene:Bt.18521
ProteinModelPortal:Q0P5I6 Ensembl:ENSBTAT00000003524 GeneID:507240
KEGG:bta:507240 CTD:84950 eggNOG:NOG241318 HOGENOM:HOG000173665
HOVERGEN:HBG104959 InParanoid:Q0P5I6 KO:K12849 OMA:YMRLTGS
OrthoDB:EOG4NP74H NextBio:20867971 InterPro:IPR005037
InterPro:IPR024767 PANTHER:PTHR23142 Pfam:PF12871 Uniprot:Q0P5I6
Length = 312
Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 136/181 (75%), Positives = 164/181 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 V 181
V
Sbjct: 181 V 181
Score = 39 (18.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 218 HSSKYDSHHRDPDKERDRRY 237
H SK HR + RDRR+
Sbjct: 258 HRSKSPRRHRS--RSRDRRH 275
>UNIPROTKB|Q8NAV1 [details] [associations]
symbol:PRPF38A "Pre-mRNA-splicing factor 38A" species:9606
"Homo sapiens" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] Pfam:PF03371 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 EMBL:AL513218 CTD:84950 eggNOG:NOG241318
HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849 OMA:YMRLTGS
OrthoDB:EOG4NP74H InterPro:IPR005037 InterPro:IPR024767
PANTHER:PTHR23142 Pfam:PF12871 EMBL:AK027842 EMBL:AK092038
EMBL:BC000777 EMBL:BC063655 EMBL:BC105004 EMBL:BC105006
IPI:IPI00171390 IPI:IPI00386847 RefSeq:NP_116253.2 UniGene:Hs.5301
ProteinModelPortal:Q8NAV1 IntAct:Q8NAV1 MINT:MINT-1382708
PhosphoSite:Q8NAV1 DMDM:74760086 PaxDb:Q8NAV1 PeptideAtlas:Q8NAV1
PRIDE:Q8NAV1 Ensembl:ENST00000257181 GeneID:84950 KEGG:hsa:84950
UCSC:uc001ctv.4 GeneCards:GC01P052870 HGNC:HGNC:25930
neXtProt:NX_Q8NAV1 PharmGKB:PA142671125 InParanoid:Q8NAV1
PhylomeDB:Q8NAV1 ChiTaRS:PRPF38A GenomeRNAi:84950 NextBio:75434
ArrayExpress:Q8NAV1 Bgee:Q8NAV1 CleanEx:HS_PRPF38A
Genevestigator:Q8NAV1 Uniprot:Q8NAV1
Length = 312
Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 136/181 (75%), Positives = 164/181 (90%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMELR++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 V 181
V
Sbjct: 181 V 181
Score = 39 (18.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 218 HSSKYDSHHRDPDKERDRRY 237
H SK HR + RDRR+
Sbjct: 258 HRSKSPRRHRS--RSRDRRH 275
>ZFIN|ZDB-GENE-040801-225 [details] [associations]
symbol:prpf38a "PRP38 pre-mRNA processing factor 38
(yeast) domain containing A" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] Pfam:PF03371 ZFIN:ZDB-GENE-040801-225 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GeneTree:ENSGT00700000104035 CTD:84950
eggNOG:NOG241318 HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849
OMA:YMRLTGS OrthoDB:EOG4NP74H InterPro:IPR005037 PANTHER:PTHR23142
EMBL:BC075873 EMBL:BC152173 IPI:IPI00505995 RefSeq:NP_001003483.1
UniGene:Dr.34097 Ensembl:ENSDART00000057290 GeneID:445089
KEGG:dre:445089 InParanoid:Q6DHU4 NextBio:20831852 Bgee:Q6DHU4
Uniprot:Q6DHU4
Length = 313
Score = 755 (270.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 136/181 (75%), Positives = 162/181 (89%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA SV GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1 MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGN+KPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+SVDCYKYL
Sbjct: 61 YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G FE++H+DE+ID+LL ERMCD+ILPR+QKR VLEE ++ +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180
Query: 181 V 181
+
Sbjct: 181 I 181
Score = 38 (18.4 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 218 HSSKYDSHHRDPDKERDRR 236
H SK HR +ER R
Sbjct: 260 HRSKSPRRHRSRSRERRHR 278
>MGI|MGI:1916962 [details] [associations]
symbol:Prpf38a "PRP38 pre-mRNA processing factor 38 (yeast)
domain containing A" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] MGI:MGI:1916962
Pfam:PF03371 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:AL626783 GeneTree:ENSGT00700000104035 CTD:84950
eggNOG:NOG241318 HOGENOM:HOG000173665 HOVERGEN:HBG104959 KO:K12849
OMA:YMRLTGS OrthoDB:EOG4NP74H InterPro:IPR005037 PANTHER:PTHR23142
ChiTaRS:PRPF38A EMBL:AK075925 EMBL:AK169741 EMBL:CT010186
EMBL:BC059875 IPI:IPI00226155 IPI:IPI00845808 RefSeq:NP_766285.2
UniGene:Mm.157534 ProteinModelPortal:Q4FK66 PhosphoSite:Q4FK66
PaxDb:Q4FK66 PRIDE:Q4FK66 Ensembl:ENSMUST00000079213 GeneID:230596
KEGG:mmu:230596 InParanoid:Q4FK66 NextBio:379965 Bgee:Q4FK66
Genevestigator:Q4FK66 Uniprot:Q4FK66
Length = 312
Score = 742 (266.3 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 133/181 (73%), Positives = 162/181 (89%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRTVKDA S+ GTNPQYL+EKIIR RIY+SKYWKEECF L+AEL+VDKAMEL+++GGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+GGNIKPTPFLCL LKMLQIQPEKDI+VEFIKNE+FKYVR LGA YMRLTG+++DCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVK 180
EPL+ D RK++ QNR G F ++H+DE+I +LL ER+CD+ILPR+QKR+VLEE ++E +
Sbjct: 121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 181 V 181
V
Sbjct: 181 V 181
Score = 39 (18.8 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 218 HSSKYDSHHRDPDKERDRRY 237
H SK HR + RDRR+
Sbjct: 258 HRSKSPRRHRS--RSRDRRH 275
>WB|WBGene00008380 [details] [associations]
symbol:prp-38 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] Pfam:PF03371
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0045132
GeneTree:ENSGT00700000104035 eggNOG:NOG241318 HOGENOM:HOG000173665
KO:K12849 OMA:YMRLTGS InterPro:IPR005037 PANTHER:PTHR23142
EMBL:Z74030 PIR:T20297 RefSeq:NP_505762.1 ProteinModelPortal:Q18942
STRING:Q18942 PaxDb:Q18942 EnsemblMetazoa:D1054.14.1
EnsemblMetazoa:D1054.14.2 GeneID:179499 KEGG:cel:CELE_D1054.14
UCSC:D1054.14.1 CTD:179499 WormBase:D1054.14 InParanoid:Q18942
NextBio:905666 Uniprot:Q18942
Length = 320
Score = 677 (243.4 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 124/173 (71%), Positives = 148/173 (85%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRT K AK+V+GTNPQ+L+EKIIR RIYDS YWKE CFAL+AEL+VDK M+LRYIGG+
Sbjct: 1 MANRTEKAAKTVKGTNPQFLVEKIIRQRIYDSMYWKEHCFALTAELVVDKGMDLRYIGGI 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
+ GNIKPTPFLCL LKMLQIQP+KDIV+EFI+ EEFKY+RALGA Y+RLT S + YKYL
Sbjct: 61 YAGNIKPTPFLCLALKMLQIQPDKDIVLEFIQQEEFKYIRALGAMYLRLTFDSTEIYKYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEE 173
EPL+ D RKLR+ N+ G FE I+MD++ID LLRE+R CD+ LPR+QKR LEE
Sbjct: 121 EPLYNDFRKLRYMNKMGRFEAIYMDDFIDNLLREDRYCDIQLPRLQKRWALEE 173
Score = 39 (18.8 bits), Expect = 8.7e-69, Sum P(2) = 8.7e-69
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 223 DSHHRDPDKERDR 235
D RD D+ RDR
Sbjct: 261 DDRRRDRDRSRDR 273
>TAIR|locus:2064811 [details] [associations]
symbol:AT2G40650 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] Pfam:PF03371 EMBL:CP002685 KO:K12849 OMA:YMRLTGS
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 EMBL:AY087415 IPI:IPI00538261 RefSeq:NP_565937.1
UniGene:At.28044 UniGene:At.72542 PRIDE:Q8LB54
EnsemblPlants:AT2G40650.1 GeneID:818660 KEGG:ath:AT2G40650
TAIR:At2g40650 InParanoid:Q8LB54 PhylomeDB:Q8LB54
ProtClustDB:CLSN2688844 Genevestigator:Q8LB54 Uniprot:Q8LB54
Length = 355
Score = 607 (218.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 122/240 (50%), Positives = 160/240 (66%)
Query: 1 MANRTVKDAKSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGV 60
MANRT AK++RGTNPQ L+EKI+R +IY +WKE+CF L+AE LVDKAMEL ++GG
Sbjct: 1 MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60
Query: 61 FGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYL 120
FGG+ KPTPFLCLILKMLQIQPEK+IVVEFIKN+++KYVR LGA+Y+RLTG+ VD Y+YL
Sbjct: 61 FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120
Query: 121 EPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEV- 179
EPL+ D RK+R + G F + H+DE I++LL ++ CD+ +PR++KR LE+N +E
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180
Query: 180 KVXXXXXXXXXXXXXXXXXXXXXXXXVYDKNRMDVDTYHSS----KYDSH-HRDPDKERD 234
K D+ R + + DSH HRD D +RD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRDRRRDSHRHRDRDYDRD 240
Score = 39 (18.8 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 223 DSH-HRDPDKERDRRY 237
DSH HRD D +RD Y
Sbjct: 228 DSHRHRDRDYDRD--Y 241
>GENEDB_PFALCIPARUM|PF11_0336 [details] [associations]
symbol:PF11_0336 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF03371 EMBL:AE014186 HOGENOM:HOG000173665 KO:K12849
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 OMA:PYWKEKC ProtClustDB:CLSZ2515186
RefSeq:XP_001348007.1 ProteinModelPortal:Q8II38
EnsemblProtists:PF11_0336:mRNA GeneID:810883 KEGG:pfa:PF11_0336
EuPathDB:PlasmoDB:PF3D7_1132600 Uniprot:Q8II38
Length = 386
Score = 544 (196.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 101/182 (55%), Positives = 138/182 (75%)
Query: 1 MANRTVKDAKSVR--GTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIG 58
MANRT DA +++ G+NPQYLI IIR++IYDS YWKE+CFAL++E ++D+A+ L+Y+G
Sbjct: 1 MANRT--DASAIKNFGSNPQYLISNIIRSKIYDSPYWKEKCFALTSESIIDQAINLKYVG 58
Query: 59 GVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYK 118
G +GGN KPT FLCLILK+LQIQP+KDI+ E+IKNE+F Y+RALG +Y+RL G S++ Y
Sbjct: 59 GTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIGKSLEVYN 118
Query: 119 YLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIE 178
+LEP+ D RK+R + + G FE I+MD ++D L DV P + KR VLEENN ++
Sbjct: 119 HLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVLEENNLLQ 178
Query: 179 VK 180
K
Sbjct: 179 RK 180
Score = 52 (23.4 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 207 YDKNRMDVDTY---HSSKYDS----HHRDPDKERDRR 236
YDKN+ Y +++KYD HH D + DR+
Sbjct: 250 YDKNKKHNKIYNHKYNNKYDDEERRHHSDYSSDMDRK 286
Score = 40 (19.1 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 217 YHSSKYDSHHRDPDKE 232
YHSS +H D +K+
Sbjct: 350 YHSSSQSNHSYDENKK 365
>UNIPROTKB|Q8II38 [details] [associations]
symbol:PF11_0336 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF03371 EMBL:AE014186 HOGENOM:HOG000173665 KO:K12849
InterPro:IPR005037 InterPro:IPR024767 PANTHER:PTHR23142
Pfam:PF12871 OMA:PYWKEKC ProtClustDB:CLSZ2515186
RefSeq:XP_001348007.1 ProteinModelPortal:Q8II38
EnsemblProtists:PF11_0336:mRNA GeneID:810883 KEGG:pfa:PF11_0336
EuPathDB:PlasmoDB:PF3D7_1132600 Uniprot:Q8II38
Length = 386
Score = 544 (196.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 101/182 (55%), Positives = 138/182 (75%)
Query: 1 MANRTVKDAKSVR--GTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIG 58
MANRT DA +++ G+NPQYLI IIR++IYDS YWKE+CFAL++E ++D+A+ L+Y+G
Sbjct: 1 MANRT--DASAIKNFGSNPQYLISNIIRSKIYDSPYWKEKCFALTSESIIDQAINLKYVG 58
Query: 59 GVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYK 118
G +GGN KPT FLCLILK+LQIQP+KDI+ E+IKNE+F Y+RALG +Y+RL G S++ Y
Sbjct: 59 GTYGGNRKPTRFLCLILKLLQIQPDKDIIYEYIKNEDFVYLRALGIFYLRLIGKSLEVYN 118
Query: 119 YLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIE 178
+LEP+ D RK+R + + G FE I+MD ++D L DV P + KR VLEENN ++
Sbjct: 119 HLEPILFDYRKIRMRLQNGTFEKIYMDVFVDNCLILNNFLDVDFPTLTKRQVLEENNLLQ 178
Query: 179 VK 180
K
Sbjct: 179 RK 180
Score = 52 (23.4 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 207 YDKNRMDVDTY---HSSKYDS----HHRDPDKERDRR 236
YDKN+ Y +++KYD HH D + DR+
Sbjct: 250 YDKNKKHNKIYNHKYNNKYDDEERRHHSDYSSDMDRK 286
Score = 40 (19.1 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 217 YHSSKYDSHHRDPDKE 232
YHSS +H D +K+
Sbjct: 350 YHSSSQSNHSYDENKK 365
>DICTYBASE|DDB_G0274361 [details] [associations]
symbol:prpf38a "putative U4/U6.U5 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] dictyBase:DDB_G0274361
Pfam:PF03371 GenomeReviews:CM000151_GR EMBL:AAFI02000012
eggNOG:NOG241318 KO:K12849 InterPro:IPR005037 InterPro:IPR024767
PANTHER:PTHR23142 Pfam:PF12871 RefSeq:XP_643885.1
EnsemblProtists:DDB0233545 GeneID:8619311 KEGG:ddi:DDB_G0274361
InParanoid:Q86IV3 OMA:PYWKEKC ProtClustDB:CLSZ2515186
Uniprot:Q86IV3
Length = 515
Score = 448 (162.8 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 87/159 (54%), Positives = 110/159 (69%)
Query: 10 KSVRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTP 69
KS+ G NP+ LIEKI R +I YWKE+C L+ E LVD+AM L GG FGGN +PT
Sbjct: 48 KSIHGVNPRNLIEKITRIKIQSHPYWKEKCIGLNEESLVDRAMALESYGGCFGGNKQPTH 107
Query: 70 FLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRK 129
FLCL+LKMLQIQPE DI+ EFI+NE+FKYVR LGA Y+RL G VD Y L+PL+ D R
Sbjct: 108 FLCLLLKMLQIQPEMDIIKEFIENEDFKYVRILGAIYLRLVGKPVDIYNQLDPLYKDFRA 167
Query: 130 LRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKR 168
LR + G+ +V +D++I++LL CD+ LP I R
Sbjct: 168 LRRKTDMGSTKVF-VDQFIEELLTTNYSCDIALPHIPSR 205
Score = 50 (22.7 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 215 DTYHSSKYDSHHRDPDKERDR-RY 237
D Y+ D +RD D RDR RY
Sbjct: 364 DEYYRMDRDDRYRDSDSYRDRDRY 387
Score = 49 (22.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 207 YDKNRMDVDTYHSSKYDSHHRDPDKERDR-RY 237
YD N D S+KY H+D +++RDR RY
Sbjct: 330 YDDNDRD----RSTKY---HKDSNRDRDRDRY 354
Score = 44 (20.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 208 DKNRMDVDTYHS-SKYDSHHRDPDKER----DRRY 237
D+ R D D+Y +Y + R+ D+ER DR Y
Sbjct: 373 DRYR-DSDSYRDRDRYRNRDRERDREREGERDRNY 406
Score = 41 (19.5 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 211 RMDVDTYH--SSKY-D-SHHRDPDKERDR 235
RMD D + S Y D +R+ D+ERDR
Sbjct: 368 RMDRDDRYRDSDSYRDRDRYRNRDRERDR 396
Score = 37 (18.1 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 218 HSSKYDSHHRDPDKERD-RRY 237
H K+ H++ + E + +RY
Sbjct: 275 HKEKHKEKHKENENENENKRY 295
>ASPGD|ASPL0000077881 [details] [associations]
symbol:AN4672 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03371 EMBL:BN001303
HOGENOM:HOG000173665 InterPro:IPR005037 PANTHER:PTHR23142
OMA:CLAFKLL EnsemblFungi:CADANIAT00005761 Uniprot:C8VB07
Length = 250
Score = 243 (90.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 43/80 (53%), Positives = 60/80 (75%)
Query: 12 VRGTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFL 71
VRG NP L EK +R RI +S YWKE+CF L+A L D+A+EL +IGG +G + K +PFL
Sbjct: 22 VRGLNPAMLFEKAVRDRITESYYWKEQCFGLNAATLCDRAVELTFIGGTYGVSEKASPFL 81
Query: 72 CLILKMLQIQPEKDIVVEFI 91
CL K+LQI P++DI++E++
Sbjct: 82 CLAFKLLQINPDRDIIMEYL 101
Score = 191 (72.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 38/87 (43%), Positives = 60/87 (68%)
Query: 95 EFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLRE 154
+FKY+RAL A+Y+RLT V+ YK LEPL D RKL+ + R +F + +MD+++D LL +
Sbjct: 133 DFKYLRALAAFYVRLTWEPVEIYKTLEPLLLDYRKLKRRVRD-SFVLTYMDQFVDDLLTK 191
Query: 155 ERMCDVILPRIQKRHVLEENNEIEVKV 181
+RMC L ++ R LE+ + +EV++
Sbjct: 192 DRMCGTSLWKLPSRQQLEDLDLLEVRI 218
>POMBASE|SPBC19C2.08 [details] [associations]
symbol:prp38 "U4/U6 x U5 tri-snRNP complex subunit Prp38
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPBC19C2.08 Pfam:PF03371
GO:GO:0005829 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0046540 GO:GO:0045292 eggNOG:NOG241318 HOGENOM:HOG000173665
KO:K12849 InterPro:IPR005037 PANTHER:PTHR23142 PIR:T39799
RefSeq:NP_595693.1 IntAct:Q9UUD2 EnsemblFungi:SPBC19C2.08.1
GeneID:2540453 KEGG:spo:SPBC19C2.08 OMA:CLAFKLL OrthoDB:EOG4B01ZV
NextBio:20801580 Uniprot:Q9UUD2
Length = 210
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 78/162 (48%), Positives = 112/162 (69%)
Query: 17 PQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAMELRYIGGVFGGNIKPTPFLCLILK 76
P +LI KI+R RI DS YWKE+CF L+A LVD+A+ L YIGG +G N +PT F+CL+ K
Sbjct: 21 PTFLIGKILRERIVDSIYWKEQCFGLNACSLVDRAVRLEYIGGQYG-NQRPTEFICLLYK 79
Query: 77 MLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQ 136
+LQI PEK+I+ +++ EFKY+RAL A+Y+RLT V+ ++ LEPL D RKLR +
Sbjct: 80 LLQIAPEKEIIQQYLSIPEFKYLRALAAFYVRLTWDDVEVHQTLEPLLRDYRKLRIRTNS 139
Query: 137 GAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIE 178
+ ++DE +D LL E +CD+ LP ++ R LE+ + +E
Sbjct: 140 -EIRLTYLDEVVDDLLNAEVVCDISLPPLRSRLQLEDLDLLE 180
>UNIPROTKB|G4N721 [details] [associations]
symbol:MGG_03636 "Pre-mRNA-splicing factor 38A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] Pfam:PF03371
GO:GO:0005829 GO:GO:0000398 EMBL:CM001234 GO:GO:0046540 KO:K12849
InterPro:IPR005037 PANTHER:PTHR23142 RefSeq:XP_003716253.1
EnsemblFungi:MGG_03636T0 GeneID:2676512 KEGG:mgr:MGG_03636
Uniprot:G4N721
Length = 272
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 74/171 (43%), Positives = 115/171 (67%)
Query: 14 GTNPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAME-LRYIGGVFGGNIKPTPFLC 72
G N ++EK + RI +S +WKE+CF ++ +VD+ ++ + YIGGV G + KPTPFLC
Sbjct: 27 GLNRARIMEKAVVDRITESYFWKEQCFGVNEADIVDRVVDHVTYIGGVVGQSQKPTPFLC 86
Query: 73 LILKMLQIQPEKDIVVEFIK--NEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKL 130
L K+LQ+ P+ I+ E++K E+FKY+RAL +Y+RLT +S D ++ LEP D RKL
Sbjct: 87 LAFKLLQLGPDDSILAEYLKFGGEKFKYLRALAIFYVRLTRTSADVFRTLEPFLEDRRKL 146
Query: 131 RFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRIQKRHVLEENNEIEVKV 181
R + R G + +MDE+ D LL ++R+C L ++ +R VLE+ +E+E +V
Sbjct: 147 RRKGRAGT-SLTYMDEFADDLLTKDRVCATSLFKLTRRDVLEDLDELEPRV 196
>CGD|CAL0000644 [details] [associations]
symbol:FGR16 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IMP] [GO:0036170
"filamentous growth of a population of unicellular organisms in
response to starvation" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0071216 "cellular response to
biotic stimulus" evidence=IMP] CGD:CAL0000644 Pfam:PF03371
GO:GO:0071216 GO:GO:0036180 GO:GO:0009267 GO:GO:0036170
EMBL:AACQ01000114 EMBL:AACQ01000113 eggNOG:NOG241318
InterPro:IPR005037 PANTHER:PTHR23142 KO:K12851 RefSeq:XP_713908.1
RefSeq:XP_713966.1 GeneID:3644352 GeneID:3644411
KEGG:cal:CaO19.2303 KEGG:cal:CaO19.9839 Uniprot:Q59WJ8
Length = 233
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/175 (33%), Positives = 97/175 (55%)
Query: 16 NPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAME-LRYIGGVFGGNIKPTPFLCLI 74
N LIE IIR RI DS ++K+ + + ++ +E + YIGG N +P+ F+ +
Sbjct: 23 NKSNLIEPIIRHRIQDSLFYKQHLYLSNEATILPIIIEHVHYIGGTDSSN-RPSTFISCL 81
Query: 75 LKMLQIQPEKDIVVEFIKN---EEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLR 131
++L+++P K+I+ ++ EFKY+ AL Y+RLT S + Y + F D RKLR
Sbjct: 82 FRLLELEPSKEIIKTYLTQLDFNEFKYLTALTLIYIRLTYPSQEVYSIFDQYFQDFRKLR 141
Query: 132 FQNRQGAFEV----IH-----MDEYIDQLLREERMCDVILPRIQKRHVLEENNEI 177
+ + F+ IH +DE++D LL ER+ D++LPR+ R L E ++
Sbjct: 142 IKLKTPVFDSQKLPIHYKITFIDEWVDTLLVNERVIDLMLPRLIPRTTLVERGQL 196
>UNIPROTKB|Q59WJ8 [details] [associations]
symbol:FGR16 "Potential spliceosomal U4/U6.U5 tri-snRNP
factor PRP38" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] CGD:CAL0000644
Pfam:PF03371 GO:GO:0071216 GO:GO:0036180 GO:GO:0009267
GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113 eggNOG:NOG241318
InterPro:IPR005037 PANTHER:PTHR23142 KO:K12851 RefSeq:XP_713908.1
RefSeq:XP_713966.1 GeneID:3644352 GeneID:3644411
KEGG:cal:CaO19.2303 KEGG:cal:CaO19.9839 Uniprot:Q59WJ8
Length = 233
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 59/175 (33%), Positives = 97/175 (55%)
Query: 16 NPQYLIEKIIRARIYDSKYWKEECFALSAELLVDKAME-LRYIGGVFGGNIKPTPFLCLI 74
N LIE IIR RI DS ++K+ + + ++ +E + YIGG N +P+ F+ +
Sbjct: 23 NKSNLIEPIIRHRIQDSLFYKQHLYLSNEATILPIIIEHVHYIGGTDSSN-RPSTFISCL 81
Query: 75 LKMLQIQPEKDIVVEFIKN---EEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLR 131
++L+++P K+I+ ++ EFKY+ AL Y+RLT S + Y + F D RKLR
Sbjct: 82 FRLLELEPSKEIIKTYLTQLDFNEFKYLTALTLIYIRLTYPSQEVYSIFDQYFQDFRKLR 141
Query: 132 FQNRQGAFEV----IH-----MDEYIDQLLREERMCDVILPRIQKRHVLEENNEI 177
+ + F+ IH +DE++D LL ER+ D++LPR+ R L E ++
Sbjct: 142 IKLKTPVFDSQKLPIHYKITFIDEWVDTLLVNERVIDLMLPRLIPRTTLVERGQL 196
>TAIR|locus:2169160 [details] [associations]
symbol:ATSRL1 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009651 "response to salt stress"
evidence=IGI;IMP] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=RCA] Pfam:PF03371 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009651 InterPro:IPR005037
PANTHER:PTHR23142 KO:K12850 OMA:HTDSAYI EMBL:AY093216 EMBL:BT008856
IPI:IPI00516946 RefSeq:NP_851101.1 UniGene:At.24006
ProteinModelPortal:Q8RWB1 PRIDE:Q8RWB1 EnsemblPlants:AT5G37370.1
GeneID:833711 KEGG:ath:AT5G37370 TAIR:At5g37370
HOGENOM:HOG000029043 InParanoid:Q8RWB1 PhylomeDB:Q8RWB1
ProtClustDB:CLSN2918313 ArrayExpress:Q8RWB1 Genevestigator:Q8RWB1
Uniprot:Q8RWB1
Length = 393
Score = 119 (46.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 36/149 (24%), Positives = 66/149 (44%)
Query: 20 LIEKIIRARIYDSKYWKEECFALSA--ELLVDKAMELRYIGGVFGGNIK-PTPFLCLILK 76
L+EK++ I S Y+KE + L E++ + ++ ++ GGN + P+ CL+ K
Sbjct: 14 LLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLLYK 72
Query: 77 MLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDCYKYLEPLFADSRKLRFQNRQ 136
++ + +K+ + Y+RA+G Y+R + + + EP D +
Sbjct: 73 FFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFS-PGSN 131
Query: 137 GAFEVIHMDEYIDQLLREERMCDVILPRI 165
G M Y+ LL D + PRI
Sbjct: 132 GRMTT--MGVYVRDLLLGLYYFDTLFPRI 158
Score = 39 (18.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 217 YHSSKYDSHHRDPDKERDR 235
Y+S + R+ ++E+DR
Sbjct: 253 YYSDRDSDRQREREREKDR 271
>WB|WBGene00022434 [details] [associations]
symbol:Y108G3AL.2 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] Pfam:PF03371
EMBL:FO081768 GeneTree:ENSGT00700000104061 InterPro:IPR005037
PANTHER:PTHR23142 eggNOG:NOG266713 KO:K12850 RefSeq:NP_503148.1
ProteinModelPortal:Q95Y35 STRING:Q95Y35 PaxDb:Q95Y35
EnsemblMetazoa:Y108G3AL.2 GeneID:178546 KEGG:cel:CELE_Y108G3AL.2
UCSC:Y108G3AL.2 CTD:178546 WormBase:Y108G3AL.2 HOGENOM:HOG000110751
InParanoid:Q95Y35 OMA:NIRESYY NextBio:901576 Uniprot:Q95Y35
Length = 327
Score = 109 (43.4 bits), Expect = 0.00079, P = 0.00079
Identities = 23/109 (21%), Positives = 53/109 (48%)
Query: 57 IGGVFGGNIKPTPFLCLILKMLQIQPEKDIVVEFIKNEEFKYVRALGAYYMRLTGSSVDC 116
+ GV G + + + CL+ ++ ++ + ++ + + + Y+R LG Y+R T D
Sbjct: 124 VRGVGAGGVVSSAY-CLLYRLFNLKISRKQLISMLNSRQSVYIRGLGFMYIRYTQPPADL 182
Query: 117 YKYLEPLFADSRKLRFQNRQGAFEVIHMDEYIDQLLREERMCDVILPRI 165
+ +LEP D R++ R G +++ + + ++ + + PRI
Sbjct: 183 WYWLEPYLDDDREI--DPRSGGGDLMTFGQLVRTMINKLDWYGTLFPRI 229
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.139 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 305 219 0.00092 112 3 11 22 0.49 32
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 597 (63 KB)
Total size of DFA: 180 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.48u 0.13s 20.61t Elapsed: 00:00:01
Total cpu time: 20.48u 0.13s 20.61t Elapsed: 00:00:01
Start: Thu Aug 15 15:37:29 2013 End: Thu Aug 15 15:37:30 2013