BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14240
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+M
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 176
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 177 DLIAKLPCVAA 187
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+M
Sbjct: 115 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 174
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 175 DLIAKLPCVAA 185
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED M
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCM 176
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 177 DLIAKLPCVAA 187
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 63/71 (88%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+H++KYWE +YED M
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCM 176
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 177 DLIAKLPCVAA 187
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +M
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAM 176
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 177 DLIAKLPCVAA 187
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G+ ++KYWE VYE +M
Sbjct: 116 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAM 175
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 176 DLIAKLPCVAA 186
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 35.4 bits (80), Expect = 0.007, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
R LP+H++ +P HPMS A+ S+F D E +YE +
Sbjct: 71 RRALPAHLLESFKRYPVSAHPMSFLRTAV------SEFGML--DPTEGDISREALYEKGL 122
Query: 72 DLIAKLPVVAA 82
DLIAK + A
Sbjct: 123 DLIAKFATIVA 133
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 2 VFTSPNTGSMRAELPSHVVTMLNNFPNHL--HPMSQFSAAITALNS 45
+FT + G + A+ P+ V T+ P H+ HP Q++ + LNS
Sbjct: 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS 200
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 30.4 bits (67), Expect = 0.29, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNS----ESKFAKAYNDGVHKSKYWEYVYED 69
EL V ++ N HPM AA+ A + K +A + G +K++ E Y
Sbjct: 92 ELHPATVEVIRNLAK-AHPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRI 150
Query: 70 SMDLIAKLPVVAA 82
+ L+AK+P + A
Sbjct: 151 AEKLVAKMPTIVA 163
>pdb|3R12|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R12|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R13|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
pdb|3R13|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
Length = 260
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 12 RAELPS---HVVTMLNNFP-NHLHPMSQFSAAITALNSES-KFAKAYNDGVHKSKYWEYV 66
R EL VVT++ FP ++ AI A+ S + + N G K+K WEYV
Sbjct: 87 REELEGTDVKVVTVVG-FPLGANETRTKAHEAIFAVESGADEIDXVINVGXLKAKEWEYV 145
Query: 67 YEDSMDLI----AKLPVVAAPSCTL----VVFYCLVSPPDSSDWLRWS 106
YED ++ K+ V +C L + C++S + +++ S
Sbjct: 146 YEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKTS 193
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 18 HVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKL 77
HV + P H HPMS A + L +E +H + E E + +++AK+
Sbjct: 125 HVKAAIAAMPQHTHPMSSLIAGVNVLAAEH---------IHNGQK-ESQDEVAKNIVAKI 174
Query: 78 PVVAA 82
+AA
Sbjct: 175 ATIAA 179
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 15 LPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLI 74
LP V+ ++ P + HPM I+ L + +D E VY + +
Sbjct: 72 LPKEVIEIMEALPKNTHPMGALRTIISYLGN-------IDDSGDIPVTPEEVYRIGISVT 124
Query: 75 AKLPVVAA 82
AK+P + A
Sbjct: 125 AKIPTIVA 132
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 15 LPSHVVTMLNNFPNHLHPMSQFSAAITALNSES 47
LP H+ ++ + PN++ MS ++AL +
Sbjct: 72 LPEHIERLIQSLPNNMDDMSVLRTVVSALGENT 104
>pdb|3LCM|A Chain A, Crystal Structure Of Smu.1420 From Streptococcus Mutans
Ua159
pdb|3LCM|B Chain B, Crystal Structure Of Smu.1420 From Streptococcus Mutans
Ua159
pdb|3LCM|C Chain C, Crystal Structure Of Smu.1420 From Streptococcus Mutans
Ua159
pdb|3LCM|D Chain D, Crystal Structure Of Smu.1420 From Streptococcus Mutans
Ua159
pdb|4F8Y|A Chain A, Complex Structure Of Nadph:quinone Oxidoreductase With
Menadione In Streptococcus Mutans
pdb|4F8Y|B Chain B, Complex Structure Of Nadph:quinone Oxidoreductase With
Menadione In Streptococcus Mutans
pdb|4F8Y|C Chain C, Complex Structure Of Nadph:quinone Oxidoreductase With
Menadione In Streptococcus Mutans
pdb|4F8Y|D Chain D, Complex Structure Of Nadph:quinone Oxidoreductase With
Menadione In Streptococcus Mutans
Length = 196
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 1 MVFTSPNTGSMRAEL---------PSHVVTMLNNFPNHLHPMSQFS 37
+V+T PN S AE+ H V+ L+ + H P+ QF+
Sbjct: 5 IVYTHPNPTSFNAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFN 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,358,825
Number of Sequences: 62578
Number of extensions: 114126
Number of successful extensions: 267
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 21
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)