Query psy14240
Match_columns 106
No_of_seqs 120 out of 1021
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:58:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2617|consensus 99.8 2E-19 4.4E-24 147.3 6.8 87 6-98 130-216 (458)
2 TIGR01793 cit_synth_euk citrat 99.8 1.3E-18 2.9E-23 143.4 8.6 88 6-99 109-196 (427)
3 cd06105 ScCit1-2_like Saccharo 99.7 2.8E-17 6.1E-22 135.5 8.6 84 6-95 106-189 (427)
4 cd06106 ScCit3_like Saccharomy 99.7 8.6E-17 1.9E-21 132.7 8.5 85 6-96 106-190 (428)
5 PLN02456 citrate synthase 99.7 1.1E-16 2.5E-21 132.8 8.5 85 6-96 126-210 (455)
6 PRK09569 type I citrate syntha 99.7 1.7E-16 3.6E-21 131.3 8.7 84 6-95 108-192 (437)
7 cd06103 ScCS-like Saccharomyce 99.6 5.3E-16 1.1E-20 128.0 8.5 83 7-95 107-190 (426)
8 cd06107 EcCS_AthCS-per_like Es 99.6 1.2E-14 2.6E-19 118.5 8.2 78 6-95 67-150 (382)
9 TIGR01798 cit_synth_I citrate 99.6 1.3E-14 2.8E-19 119.3 8.3 76 7-95 95-170 (412)
10 cd06115 AthCS_per_like Arabido 99.5 1.6E-14 3.4E-19 118.7 8.5 83 7-95 88-170 (410)
11 cd06116 CaCS_like Chloroflexus 99.5 2.7E-14 5.9E-19 116.4 7.8 77 6-95 67-143 (384)
12 PRK12351 methylcitrate synthas 99.5 5.2E-14 1.1E-18 114.7 8.1 75 7-95 71-145 (378)
13 cd06112 citrate_synt_like_1_1 99.5 7.9E-14 1.7E-18 113.2 8.4 77 7-95 64-140 (373)
14 PRK14036 citrate synthase; Pro 99.5 1.3E-13 2.9E-18 112.2 7.9 75 7-95 67-141 (377)
15 cd06117 Ec2MCS_like_1 Subgroup 99.5 1.6E-13 3.4E-18 111.4 8.1 76 6-95 61-136 (366)
16 cd06108 Ec2MCS_like Escherichi 99.4 2.8E-13 6.2E-18 109.8 8.0 72 7-95 62-133 (363)
17 PRK05614 gltA type II citrate 99.4 3.7E-13 8.1E-18 110.9 8.2 76 7-95 108-183 (419)
18 PRK14037 citrate synthase; Pro 99.4 4.7E-13 1E-17 108.9 7.9 73 7-95 67-139 (377)
19 cd06114 EcCS_like Escherichia 99.4 1.3E-12 2.8E-17 107.1 8.2 77 6-95 89-165 (400)
20 PRK14035 citrate synthase; Pro 99.4 1.6E-12 3.5E-17 105.7 8.2 76 6-95 63-139 (371)
21 PRK14034 citrate synthase; Pro 99.4 1.5E-12 3.2E-17 105.9 8.0 76 6-95 63-139 (372)
22 PRK14032 citrate synthase; Pro 99.4 1.8E-12 3.8E-17 107.7 8.0 72 7-93 113-185 (447)
23 PF00285 Citrate_synt: Citrate 99.3 3.6E-12 7.9E-17 102.5 7.9 76 7-95 61-136 (356)
24 COG0372 GltA Citrate synthase 99.3 6.4E-12 1.4E-16 103.0 7.3 77 5-97 77-153 (390)
25 cd06113 citrate_synt_like_1_2 99.3 1.6E-11 3.4E-16 100.9 8.4 74 7-95 83-157 (406)
26 PRK12349 citrate synthase 3; P 99.3 1.8E-11 3.8E-16 99.4 8.2 75 7-95 68-142 (369)
27 cd06111 DsCS_like Cold-active 99.2 5E-11 1.1E-15 96.6 8.5 75 7-95 62-136 (362)
28 cd06109 BsCS-I_like Bacillus s 99.2 5.8E-11 1.3E-15 95.9 7.5 65 6-95 61-125 (349)
29 TIGR01800 cit_synth_II 2-methy 99.2 8.1E-11 1.7E-15 95.4 7.9 75 7-95 62-136 (368)
30 PRK14033 citrate synthase; Pro 99.1 2.3E-10 5E-15 93.1 8.0 75 7-95 72-146 (375)
31 cd06118 citrate_synt_like_1 Ci 99.1 4E-10 8.6E-15 90.9 8.5 75 7-95 62-136 (358)
32 cd06110 BSuCS-II_like Bacillus 99.1 3.5E-10 7.6E-15 91.3 8.2 75 7-95 62-136 (356)
33 PRK12350 citrate synthase 2; P 95.7 0.011 2.3E-07 48.4 3.4 23 68-96 99-121 (353)
34 PF06417 DUF1077: Protein of u 60.8 22 0.00047 25.3 4.5 34 66-105 82-119 (124)
35 KOG1741|consensus 56.8 23 0.00049 24.5 3.9 38 5-42 28-69 (103)
36 COG4392 Predicted membrane pro 23.0 1.6E+02 0.0034 20.5 3.7 56 9-82 27-82 (107)
No 1
>KOG2617|consensus
Probab=99.78 E-value=2e-19 Score=147.27 Aligned_cols=87 Identities=44% Similarity=0.723 Sum_probs=84.1
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
+.++..+..+|++|+++|+++|++.|||.+|.+++++|+.+++|+++|..|.++.++|++++||+++|||++|+|+|
T Consensus 130 ~~~~a~rs~vP~~v~~~idsmP~d~HPM~q~~~a~~al~~~s~fa~ay~~G~~k~~yw~~~~ed~l~Liak~p~iAa--- 206 (458)
T KOG2617|consen 130 SFELAQRSAVPQGVLDMIDSMPKDLHPMAQLAAAVLALKIFSPFAKAYLRGIGKYKYWQYTYEDCLVLIAKLPTIAA--- 206 (458)
T ss_pred HHHHHHhccccHHHHHHHHhCCcccchHHHHHHHHHhccccccchhhhhhccchhhcccccHHHHHHHHHhccHHHH---
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccCCC
Q psy14240 86 TLVVFYCLVSPPD 98 (106)
Q Consensus 86 ~~~~~yR~~~~~~ 98 (106)
++||+..++|
T Consensus 207 ---~iY~~~~~dg 216 (458)
T KOG2617|consen 207 ---AIYRNIYADG 216 (458)
T ss_pred ---HHHHHHhcCC
Confidence 9999999777
No 2
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=99.76 E-value=1.3e-18 Score=143.35 Aligned_cols=88 Identities=53% Similarity=0.873 Sum_probs=79.9
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
+.+|..++.||++|.++|++||+++|||++|+++|++|++++.|.++|..+.++..+|++.++++++||||+|+|+|
T Consensus 109 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~~~~~~~~~~e~~~~LiAk~P~i~A--- 185 (427)
T TIGR01793 109 SAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIHKTKYWEYTYEDSMDLIAKLPTVAA--- 185 (427)
T ss_pred HHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCccccccHHHHHHHHHHHHHHHHHHHH---
Confidence 35788999999999999999999999999999999999999999999988877777899999999999999999999
Q ss_pred ccchhhhhccCCCC
Q psy14240 86 TLVVFYCLVSPPDS 99 (106)
Q Consensus 86 ~~~~~yR~~~~~~~ 99 (106)
++||++..+|+
T Consensus 186 ---~~yr~~~~~g~ 196 (427)
T TIGR01793 186 ---YIYRNMYKDGQ 196 (427)
T ss_pred ---HHHHHHhcCCC
Confidence 99997554453
No 3
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=99.71 E-value=2.8e-17 Score=135.54 Aligned_cols=84 Identities=75% Similarity=1.097 Sum_probs=76.0
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
+++|.+++.+|+.|.++|++||+++|||++|+++|++|+++++|.+.|+++.++.++|+..++++++||||+|+|+|
T Consensus 106 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~~~~~~~~~~~~~LiAk~p~i~A--- 182 (427)
T cd06105 106 SKEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVAA--- 182 (427)
T ss_pred HHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhccccccccccHHHHHHHHHHHHHHHHHHHH---
Confidence 35688889999999999999999999999999999999998888667877777667789999999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 183 ---~~yr~~~ 189 (427)
T cd06105 183 ---KIYRNLY 189 (427)
T ss_pred ---HHHHHHh
Confidence 9999854
No 4
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=99.69 E-value=8.6e-17 Score=132.71 Aligned_cols=85 Identities=44% Similarity=0.754 Sum_probs=75.0
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|.+++.||+.+.++|++||+++|||++|+++|++|+.++.|.+.|+++..+.++|++.+++++||+||+|+|+|
T Consensus 106 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~~~~~~~~~~~~~~~~~rLiAk~ptI~A--- 182 (428)
T cd06106 106 SKELAERGKLPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEKGIKKTEYWEPTLEDSLNLIARLPALAA--- 182 (428)
T ss_pred HHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccCcccccchHHHHHHHHHHHHHHHHHHH---
Confidence 35788999999999999999999999999999999999988777666766655545678889999999999999999
Q ss_pred ccchhhhhccC
Q psy14240 86 TLVVFYCLVSP 96 (106)
Q Consensus 86 ~~~~~yR~~~~ 96 (106)
++||++..
T Consensus 183 ---~~yr~~~g 190 (428)
T cd06106 183 ---RIYRNVYG 190 (428)
T ss_pred ---HHHHHHhC
Confidence 99999873
No 5
>PLN02456 citrate synthase
Probab=99.68 E-value=1.1e-16 Score=132.80 Aligned_cols=85 Identities=35% Similarity=0.540 Sum_probs=77.2
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
..+|..++.||+++.++|++||+++|||++|+++|++|++++++...|..|.+++..|+..++++++||||+|+|+|
T Consensus 126 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~g~~~~~~~~~~~~~a~rliAk~p~iaA--- 202 (455)
T PLN02456 126 EAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLRGQHKYKSWEVRDEDIVRLIGKLPTLAA--- 202 (455)
T ss_pred HHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhhhcccCcccCHHHHHHHHHHHHHHHHHHHH---
Confidence 46789999999999999999999999999999999999999988877777766656689999999999999999999
Q ss_pred ccchhhhhccC
Q psy14240 86 TLVVFYCLVSP 96 (106)
Q Consensus 86 ~~~~~yR~~~~ 96 (106)
++||++.+
T Consensus 203 ---~~yr~~~g 210 (455)
T PLN02456 203 ---AIYRRMYG 210 (455)
T ss_pred ---HHHHHHcC
Confidence 99999883
No 6
>PRK09569 type I citrate synthase; Reviewed
Probab=99.67 E-value=1.7e-16 Score=131.29 Aligned_cols=84 Identities=42% Similarity=0.717 Sum_probs=74.9
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccC-CCCCChHhHHHHHHHHHHHhhhhhhccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHKSKYWEYVYEDSMDLIAKLPVVAAPS 84 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~-~~~~~~~e~~~e~a~rLiAklPtI~A~~ 84 (106)
+++|..++.||+.|.++|++||+++|||++|++++|+|++.|.|..+|+++ .+..+.|+..++++++|||++|+|+|
T Consensus 108 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~~~~~~~~~~~~~~rliA~~p~i~A-- 185 (437)
T PRK09569 108 VAEWKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFNKMDAWEYMYEDASDLVARIPVIAA-- 185 (437)
T ss_pred HHHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhcccccccccccHHHHHHHHHHHHHHHHHHHH--
Confidence 357889999999999999999999999999999999998888888888776 33445678899999999999999999
Q ss_pred cccchhhhhcc
Q psy14240 85 CTLVVFYCLVS 95 (106)
Q Consensus 85 ~~~~~~yR~~~ 95 (106)
++||++.
T Consensus 186 ----~~yr~~~ 192 (437)
T PRK09569 186 ----YIYNLKY 192 (437)
T ss_pred ----HHHHHHh
Confidence 9999986
No 7
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=99.64 E-value=5.3e-16 Score=127.97 Aligned_cols=83 Identities=65% Similarity=1.010 Sum_probs=73.2
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccC-CCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDG-VHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~-~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
++|..++.+|+.+.++|++||+++|||++|+++||+|+++++|.++|+++ .++.++|+..++++++|+||+|+|+|
T Consensus 107 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~I~A--- 183 (426)
T cd06103 107 KEWAKRAEVPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINKTTYWEYVYEDAMDLIAKLPVVAA--- 183 (426)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHH---
Confidence 56788899999999999999999999999999999999988877777654 34445578889999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 184 ---~~yr~~~ 190 (426)
T cd06103 184 ---KIYRRKY 190 (426)
T ss_pred ---HHHHHHh
Confidence 9999874
No 8
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=99.56 E-value=1.2e-14 Score=118.49 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=64.5
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCC---C---ChHhHHHHHHHHHHHhhhh
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHK---S---KYWEYVYEDSMDLIAKLPV 79 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~---~---~~~e~~~e~a~rLiAklPt 79 (106)
+++|..++.+|++|.++|+.||+++|||++|+++||+|+++++ +..+. + ..++..++++++|+||+|+
T Consensus 67 ~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~liA~~p~ 140 (382)
T cd06107 67 QRRLSEHMMVPESVHRLIQTFPRDAHPMGILCAGLSALSAFYP------EAIPAHTGDLYQNNPEVRDKQIIRTLAKMPT 140 (382)
T ss_pred HHHHHHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhhcccCc------cccchhhccccccCHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999999999999999999998532 22111 1 1236777889999999999
Q ss_pred hhccccccchhhhhcc
Q psy14240 80 VAAPSCTLVVFYCLVS 95 (106)
Q Consensus 80 I~A~~~~~~~~yR~~~ 95 (106)
|+| ++||++.
T Consensus 141 i~A------~~yr~~~ 150 (382)
T cd06107 141 IAA------AAYCHRI 150 (382)
T ss_pred HHH------HHHHHhC
Confidence 999 9999886
No 9
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=99.55 E-value=1.3e-14 Score=119.33 Aligned_cols=76 Identities=25% Similarity=0.354 Sum_probs=63.6
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.||+.|.++|++||+++|||++|+++||+|+++ |++..+..+ .+...+++++|+||+|+|+|
T Consensus 95 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~------~~~~~~~~~-~~~~~~~a~~liA~~p~i~A---- 163 (412)
T TIGR01798 95 DTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAF------YHDSLDIND-PRHREIAAIRLIAKIPTLAA---- 163 (412)
T ss_pred HHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhh------CccccccCC-HHHHHHHHHHHHHHHHHHHH----
Confidence 5678889999999999999999999999999999999973 333222222 25566789999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 164 --~~yr~~~ 170 (412)
T TIGR01798 164 --MSYKYSI 170 (412)
T ss_pred --HHHHHhC
Confidence 9999877
No 10
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=99.55 E-value=1.6e-14 Score=118.73 Aligned_cols=83 Identities=25% Similarity=0.328 Sum_probs=64.7
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.||+.+.++|++||+++|||++|+++||+|+++++....-..+.+.....+..++++++|+||+|+|+|
T Consensus 88 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~rliA~~p~i~A---- 163 (410)
T cd06115 88 FAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRILGKAPTIAA---- 163 (410)
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHHHHHHHHHHHHH----
Confidence 5678889999999999999999999999999999999985432100000111101235678899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 164 --~~~r~~~ 170 (410)
T cd06115 164 --AAYRRRA 170 (410)
T ss_pred --HHHHHHc
Confidence 9999987
No 11
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=99.52 E-value=2.7e-14 Score=116.43 Aligned_cols=77 Identities=19% Similarity=0.206 Sum_probs=64.4
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|.+++.+|+++.++|+.||+++|||++|+++||+|++++++. .+.++ .+...++++||+||+|+|+|
T Consensus 67 ~~~L~~~~~lp~~v~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~------~~~~~-~~~~~~~~~rliA~~p~i~A--- 136 (384)
T cd06116 67 VYDITRHTMTHENLKKFMDGFRYDAHPMGILISSVAALSTFYPEA------KNIGD-EEQRNKQIIRLIGKMPTIAA--- 136 (384)
T ss_pred HHHHHHccCCCHHHHHHHHhcCcCCCcHHHHHHHHHhhhhcCccc------cccCC-HHHHHHHHHHHHHHHHHHHH---
Confidence 356889999999999999999999999999999999999864332 11122 25566788999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 137 ---~~~r~~~ 143 (384)
T cd06116 137 ---FAYRHRL 143 (384)
T ss_pred ---HHHHHHc
Confidence 9999988
No 12
>PRK12351 methylcitrate synthase; Provisional
Probab=99.51 E-value=5.2e-14 Score=114.65 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=63.7
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.||+++.++|++||+++|||++|+++|++|+++++ +..+ .+ .+..++++++||||+|+|+|
T Consensus 71 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~d~------~~~~-~~-~~~~~~~a~rliA~~p~i~a---- 138 (378)
T PRK12351 71 TKLKALRGLPAAVKTVLEAIPAAAHPMDVMRTGVSVLGCLLP------EKED-HN-FSGARDIADRLLASLGSILL---- 138 (378)
T ss_pred HHHHHhCCCCHHHHHHHHhCCccCCHHHHHHHHHHhhcccCc------cccc-CC-hHHHHHHHHHHHHHHHHHHH----
Confidence 568888999999999999999999999999999999998432 2111 12 36678899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 139 --~~~r~~~ 145 (378)
T PRK12351 139 --YWYHYSH 145 (378)
T ss_pred --HHHHHHh
Confidence 9999877
No 13
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=99.50 E-value=7.9e-14 Score=113.21 Aligned_cols=77 Identities=21% Similarity=0.310 Sum_probs=66.0
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+++.++|++||+++|||++|+++|++|++++++.. +....++..++++++|+|++|+|+|
T Consensus 64 ~~L~~~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~------~~~~~~~~~~~~a~~liA~~p~i~a---- 133 (373)
T cd06112 64 KELRQHRRVKYNIRDMMKCFPETGHPMDMLQATVAALGMFYPKPE------VLKPNPDYIDAATVKLIAKMPTLVA---- 133 (373)
T ss_pred HHHHHhcCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhccCcccc------cccCCHHHHHHHHHHHHHHHHHHHH----
Confidence 568889999999999999999999999999999999998654421 1112468888999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 134 --~~~r~~~ 140 (373)
T cd06112 134 --MWARIRN 140 (373)
T ss_pred --HHHHHHC
Confidence 9999876
No 14
>PRK14036 citrate synthase; Provisional
Probab=99.47 E-value=1.3e-13 Score=112.17 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=63.9
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+.+.++|++||+++|||++|+++|++|+++ +++..+.+ .+..++++++|+|++|+|+|
T Consensus 67 ~~L~~~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~------~~~~~~~~--~~~~~~~~~rliA~~p~i~a---- 134 (377)
T PRK14036 67 QEVRMHRRVKYRIRDMMKCFPETGHPMDALQASAAALGLF------YSRRALDD--PEYIRDAVVRLIAKIPTMVA---- 134 (377)
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhhhc------CcccccCC--HHHHHHHHHHHHHHHHHHHH----
Confidence 5678899999999999999999999999999999999974 33322222 36778999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 135 --~~~r~~~ 141 (377)
T PRK14036 135 --AFQLIRK 141 (377)
T ss_pred --HHHHHHC
Confidence 9999876
No 15
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=99.47 E-value=1.6e-13 Score=111.38 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=63.8
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|..++.+|+.+.++|++||+++|||++|+++||+|++++++. .+.+ .+...+++++|||++|+|+|
T Consensus 61 ~~~L~~~~~lp~~v~~~i~~~p~~~hpm~~l~~~vs~l~~~~~~~------~~~~--~~~~~~~a~rlia~~p~i~a--- 129 (366)
T cd06117 61 KTKLKSLRGLPANVKTALEQLPAAAHPMDVMRTGVSVLGCVLPEK------EDHP--VSGARDIADRLMASLGSILL--- 129 (366)
T ss_pred HHHHHHccCCCHHHHHHHHhCCccCCHHHHHHHHHhhhcccCccc------ccCC--hHHHHHHHHHHHHHHHHHHH---
Confidence 357888999999999999999999999999999999999865432 1111 24567889999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 ---~~~r~~~ 136 (366)
T cd06117 130 ---YWYHYSH 136 (366)
T ss_pred ---HHHHHhc
Confidence 9999875
No 16
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=99.44 E-value=2.8e-13 Score=109.80 Aligned_cols=72 Identities=21% Similarity=0.317 Sum_probs=62.0
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.||+.+.+++++||+++|||++|+++||+|+++++ +.. . +..++++++|+||+|+|+|
T Consensus 62 ~~L~~~~~lp~~v~~~i~~~p~~~hpm~~L~~~vs~l~~~d~------~~~---~--~~~~~~a~rlia~~p~i~a---- 126 (363)
T cd06108 62 TKLVALRRLPAALKTVLELIPKDSHPMDVMRTGCSMLGCLEP------ENE---F--SQQYEIAIRLLAIFPSILL---- 126 (363)
T ss_pred HHHHHhcCCCHHHHHHHHhCCCCCChHHHHHHHHHhhhhcCC------ccc---c--HHHHHHHHHHHHHHHHHHH----
Confidence 568899999999999999999999999999999999997432 211 1 4456899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 127 --~~~r~~~ 133 (363)
T cd06108 127 --YWYHYSH 133 (363)
T ss_pred --HHHHHHc
Confidence 9999886
No 17
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=99.43 E-value=3.7e-13 Score=110.89 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=64.1
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+++|+++|||++|++++++|+++ |++..+..+. +...+++++|+|++|+|+|
T Consensus 108 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~------~~~~~~~~~~-~~~~~~a~rlia~~p~i~A---- 176 (419)
T PRK05614 108 TTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAF------YHDSLDINDP-EHREIAAIRLIAKMPTLAA---- 176 (419)
T ss_pred HhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc------CccccCCCCH-HHHHHHHHHHHHHHHHHHH----
Confidence 4678889999999999999999999999999999999973 4443333443 4556789999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 177 --~~~r~~~ 183 (419)
T PRK05614 177 --MAYKYSI 183 (419)
T ss_pred --HHHHHhC
Confidence 9999866
No 18
>PRK14037 citrate synthase; Provisional
Probab=99.42 E-value=4.7e-13 Score=108.92 Aligned_cols=73 Identities=23% Similarity=0.282 Sum_probs=62.3
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|++||+++|||++|+++||+|+++ +++ .. +. +..++++++|||++|+|+|
T Consensus 67 ~~L~~~~~lp~~v~~~~~~~p~~~hpm~~l~~~vs~l~~~------~~~-~~-~~--~~~~~~a~~liA~~p~i~a---- 132 (377)
T PRK14037 67 EKLNEEYEVPQEVIDSIYLMPRDSDAIGLMEAAFAALASI------DKN-FK-WK--ENDKEKAISIIAKMATIVA---- 132 (377)
T ss_pred HHHHHhcCCCHHHHHHHHhCCccCCcHHHHHHHHHhhhcc------CCc-cc-cc--HHHHHHHHHHHHHHHHHHH----
Confidence 5678899999999999999999999999999999999974 222 11 11 4467899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 133 --~~yr~~~ 139 (377)
T PRK14037 133 --NVYRRKE 139 (377)
T ss_pred --HHHHHHc
Confidence 9999987
No 19
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=99.38 E-value=1.3e-12 Score=107.10 Aligned_cols=77 Identities=27% Similarity=0.367 Sum_probs=65.2
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
..+|..++.+|+.+.++|+++|+++|||++|+++|++|+.+ +++..+.. .++..++++++|+|++|+|+|
T Consensus 89 ~~~L~~~~~lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~------d~~~~~~~-~~~~~~~~a~~lia~~p~i~a--- 158 (400)
T cd06114 89 REEITRHTLVHEQMKRFFNGFPRDAHPMAILSAMVNALSAF------YPDSLDVN-DPEQRELAAIRLIAKVPTIAA--- 158 (400)
T ss_pred HHHHHHccCCCHHHHHHHHhcccCCCHHHHHHHHHHHHhhc------CccccccC-CHHHHHHHHHHHHHHHHHHHH---
Confidence 35678889999999999999999999999999999999974 33333222 257788999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 159 ---~~~r~~~ 165 (400)
T cd06114 159 ---MAYRYSI 165 (400)
T ss_pred ---HHHHHHc
Confidence 9999877
No 20
>PRK14035 citrate synthase; Provisional
Probab=99.38 E-value=1.6e-12 Score=105.67 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=63.9
Q ss_pred hHHHHhhCCCCHHHHHHHhcCC-CCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFP-NHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPS 84 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P-~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~ 84 (106)
..+|..++.+|+.+.+++..+| +++|||++|+++|++|++++++. .+ ..++..++++++|+||+|+|+|
T Consensus 63 ~~~L~~~~~lp~~v~~~i~~~~~~~~hpm~~l~~~vs~l~~~~~~~------~~--~~~~~~~~~a~rliA~~p~i~A-- 132 (371)
T PRK14035 63 KGKLRKYMTLNDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDA------EE--ESDEARYERAIRIQAKVASLVT-- 132 (371)
T ss_pred HHHHHHcCCCCHHHHHHHHhcCCcCCCHHHHHHHHHHHHhccCccc------cc--CCHHHHHHHHHHHHHHHHHHHH--
Confidence 3568899999999999999976 69999999999999999854332 11 2357788999999999999999
Q ss_pred cccchhhhhcc
Q psy14240 85 CTLVVFYCLVS 95 (106)
Q Consensus 85 ~~~~~~yR~~~ 95 (106)
++||++.
T Consensus 133 ----~~~r~~~ 139 (371)
T PRK14035 133 ----AFARVRQ 139 (371)
T ss_pred ----HHHHHhC
Confidence 9999876
No 21
>PRK14034 citrate synthase; Provisional
Probab=99.38 E-value=1.5e-12 Score=105.92 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=63.8
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCC-CCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPN-HLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPS 84 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~-~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~ 84 (106)
+++|..++.||+++.+++++||+ ++|||++|+++|++|+.++++. .+ .+ .+..++++++|+|++|+|+|
T Consensus 63 ~~~L~~~~~lp~~v~~~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~------~~-~~-~~~~~~~a~~liA~~p~i~a-- 132 (372)
T PRK14034 63 KEQLSENAKVPGEIIEHLKQYDLKKVHPMSVLRTAISMLGLYDEEA------EI-MD-EEANYRKAVRLQAKVPTIVA-- 132 (372)
T ss_pred HHHHHHhcCCCHHHHHHHHhCCCcCcCHHHHHHHHHHhhcccCccc------cc-CC-HHHHHHHHHHHHHHHHHHHH--
Confidence 35788899999999999999997 5999999999999999854332 11 11 36678999999999999999
Q ss_pred cccchhhhhcc
Q psy14240 85 CTLVVFYCLVS 95 (106)
Q Consensus 85 ~~~~~~yR~~~ 95 (106)
++||++.
T Consensus 133 ----~~~r~~~ 139 (372)
T PRK14034 133 ----AFSRIRK 139 (372)
T ss_pred ----HHHHHHC
Confidence 9999876
No 22
>PRK14032 citrate synthase; Provisional
Probab=99.37 E-value=1.8e-12 Score=107.66 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=61.5
Q ss_pred HHHHhhCCCCHH-HHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 7 NTGSMRAELPSH-VVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 7 ~~l~~~r~lp~~-v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
++|..++.+|+. +.+++.++| ++|||++|+++|++|+++++. ... ..|++.++++++||||+|+|+|
T Consensus 113 ~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~~-------~~~-~~~~~~~~~a~rLiA~~p~i~A--- 180 (447)
T PRK14032 113 ELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDDN-------PDD-TSIDNVLRQSISLIARFPTLAV--- 180 (447)
T ss_pred HHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCCC-------ccc-CCHHHHHHHHHHHHHHHHHHHH---
Confidence 568889999999 899999999 799999999999999974322 211 2368889999999999999999
Q ss_pred ccchhhhh
Q psy14240 86 TLVVFYCL 93 (106)
Q Consensus 86 ~~~~~yR~ 93 (106)
++||+
T Consensus 181 ---~~yr~ 185 (447)
T PRK14032 181 ---YAYQA 185 (447)
T ss_pred ---HHHHH
Confidence 99994
No 23
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=99.34 E-value=3.6e-12 Score=102.48 Aligned_cols=76 Identities=30% Similarity=0.416 Sum_probs=62.8
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.++.+++.+|+++.++++++|+++|||++|++++++|++++++ ......|+..++++++++|++|+|+|
T Consensus 61 ~~l~~~~~lpe~v~~~i~~lp~~~~pm~~L~~~vs~l~~~~~~-------~~~~~~~~~~~~~~~~liA~~p~i~a---- 129 (356)
T PF00285_consen 61 AELKERRALPEEVIEVIEALPRDAHPMDVLRAAVSALSAFDPD-------PLYDNSPEDVLEDAIRLIAKIPTIVA---- 129 (356)
T ss_dssp HHHHCTTS--HHHHHHHHCSTTTS-HHHHHHHHHHHHHHHSTT-------GTCTTSHHHHHHHHHHHHHHHHHHHH----
T ss_pred hHHHhhcchhHHHHHHHhhcCCCCCchHHHHHHHhhhhhhhhc-------cccccchhHHHHHHHHHhhcchHHHH----
Confidence 5788888999999999999999999999999999999975433 11223478899999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~~~~~~ 136 (356)
T PF00285_consen 130 --AIYRHRR 136 (356)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhC
Confidence 9999985
No 24
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=99.30 E-value=6.4e-12 Score=102.97 Aligned_cols=77 Identities=31% Similarity=0.473 Sum_probs=63.8
Q ss_pred ChHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccc
Q psy14240 5 SPNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPS 84 (106)
Q Consensus 5 ~~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~ 84 (106)
..+++..++.+|+++.++++.+|++.|||++|++++|+|+.+ +.+..+. +..++.+.|++|++|+|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~p~~~hpm~~l~~~vs~l~~~------~~~~~~~----~~~~~~a~rlia~~pti~a-- 144 (390)
T COG0372 77 FFAKLAARRTLPEQVIRLLESLPRDAHPMAVLRTAVSALSAF------YPDKLDL----NDRREAALRLIAKLPTIAA-- 144 (390)
T ss_pred HHHHHHHhcCccHHHHHHHHhCCCCcCcHHHHHHHHHHhccc------ccccccc----chhHHHHHHHHHHhhHHHH--
Confidence 457788888999999999999999999999999999999974 3222211 1267889999999999999
Q ss_pred cccchhhhhccCC
Q psy14240 85 CTLVVFYCLVSPP 97 (106)
Q Consensus 85 ~~~~~~yR~~~~~ 97 (106)
++||.+.+.
T Consensus 145 ----~~yr~~~g~ 153 (390)
T COG0372 145 ----AVYRYSRGE 153 (390)
T ss_pred ----HHHHHhcCC
Confidence 999998743
No 25
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=99.27 E-value=1.6e-11 Score=100.91 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=61.2
Q ss_pred HHHHhhCCCCHHH-HHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 7 NTGSMRAELPSHV-VTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 7 ~~l~~~r~lp~~v-~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
++|.+++.+|+.+ .++++++|. .|||++|+++|++|+.+++ +. ....|+..++++++|||++|+|+|
T Consensus 83 ~~L~~~~~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~-------~~-~~~~~~~~~~~a~rLiA~~p~i~A--- 150 (406)
T cd06113 83 EILSSYRTLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDD-------KP-DDISLENVLRQSIQLIARLPTIAV--- 150 (406)
T ss_pred HHHHHhcCCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCC-------Cc-ccCCHHHHHHHHHHHHHHHHHHHH---
Confidence 5678889999986 569999995 9999999999999997432 21 123478899999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||.+.
T Consensus 151 ---~~yr~~~ 157 (406)
T cd06113 151 ---YAYQAKR 157 (406)
T ss_pred ---HHHHHHh
Confidence 9999743
No 26
>PRK12349 citrate synthase 3; Provisional
Probab=99.27 E-value=1.8e-11 Score=99.44 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=63.2
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+.+.++++.+|+++|||++|+++|++|++++++. .+.+ ++...+++++|+|++|+|+|
T Consensus 68 ~~L~~~~~~p~~v~~~l~~~p~~~~pm~~l~~~vs~l~~~d~~~------~~~~--~~~~~~~a~~lia~~p~i~a---- 135 (369)
T PRK12349 68 KKLKEEYAVPEGVFNILKALPKETHPMDGLRTGVSALAGYDNDI------EDRS--LEVNKSRAYKLLSKVPNIVA---- 135 (369)
T ss_pred HHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhcccCccc------cccC--cHHHHHHHHHHHHHHHHHHH----
Confidence 46778999999999999999999999999999999999854331 1111 36678899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 136 --~~~r~~~ 142 (369)
T PRK12349 136 --NSYHILN 142 (369)
T ss_pred --HHHHHhc
Confidence 9999865
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=99.22 E-value=5e-11 Score=96.60 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=64.4
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+++.++++.+|+++|||++|+++|++|++++++. .+ ..++...+++.+++|++|+|+|
T Consensus 62 ~~l~~~~~lp~~~~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~------~~--~~~~~~~~~a~~lia~~~~i~a---- 129 (362)
T cd06111 62 QRERSYRRLDRNLLSLIASLPKNCHPMDVLRTAVSVLGAEDSET------DD--SSPDANLAKAIRLLAQLPTVVA---- 129 (362)
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHhhccCccc------cc--CCHHHHHHHHHHHHHHHHHHHH----
Confidence 46788899999999999999999999999999999999854332 11 2357788999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~~~~~~ 136 (362)
T cd06111 130 --ADIRRRK 136 (362)
T ss_pred --HHHHHcC
Confidence 9999876
No 28
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=99.19 E-value=5.8e-11 Score=95.87 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=58.2
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
+++|..++.+|+.+.++|++| +++|||++|++++|+++.. +.++++++++|++|+|+|
T Consensus 61 ~~~l~~~~~lp~~v~~~~~~~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a--- 118 (349)
T cd06109 61 RAALAAARALPDVVAALLPAL-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITA--- 118 (349)
T ss_pred HHHHHhcCCCCHHHHHHHHhC-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHH---
Confidence 356888999999999999999 9999999999999999841 246889999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 119 ---~~~r~~~ 125 (349)
T cd06109 119 ---ALLRLSR 125 (349)
T ss_pred ---HHHHHHc
Confidence 9999876
No 29
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=99.18 E-value=8.1e-11 Score=95.45 Aligned_cols=75 Identities=25% Similarity=0.397 Sum_probs=63.2
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+++.++++.+|+++|||++|++++++|+.+++.. .+.+ .+...+++.+|+|++|+|+|
T Consensus 62 ~~l~~~~~~p~~~~~~~~~~p~~~~pm~~l~~~ls~l~~~d~~~------~~~~--~~~~~~~a~~lia~~p~i~a---- 129 (368)
T TIGR01800 62 TELAKLRGLPDEVIELIEALPAESHPMDALRTAVSYLGALDPEA------FGHT--PEEARDIAIRLIAKLPTIVA---- 129 (368)
T ss_pred HHHHhhcCCCHHHHHHHHhCCCCCCcHHHHHHHHHHhhccCccc------ccCC--HHHHHHHHHHHHHHHHHHHH----
Confidence 45778889999999999999999999999999999999854331 1112 36678899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~~~~~~ 136 (368)
T TIGR01800 130 --YWYRIRN 136 (368)
T ss_pred --HHHHHhc
Confidence 9999875
No 30
>PRK14033 citrate synthase; Provisional
Probab=99.12 E-value=2.3e-10 Score=93.14 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=63.3
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|.+++.+|+++.++++.+|+++|||++|+++|+++++++++. .+ ..++...+++.+|+|++|+|+|
T Consensus 72 ~~l~~~~~~p~~v~~~~~~~p~~~~pm~~l~~~vs~l~~~d~~~------~~--~~~~~~~~~a~~lia~~~~i~a---- 139 (375)
T PRK14033 72 QRERAYRRLDRSVLSLIDKLPTTCHPMDVVRTAVSYLGAEDPEA------DD--SSPEANLAKALRLFAVLPTIVA---- 139 (375)
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCccc------cc--CCHHHHHHHHHHHHHHHHHHHH----
Confidence 45677888999999999999999999999999999999854331 11 1247788999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 140 --~~~~~~~ 146 (375)
T PRK14033 140 --ADQRRRR 146 (375)
T ss_pred --HHHHhcC
Confidence 9999775
No 31
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=99.10 E-value=4e-10 Score=90.94 Aligned_cols=75 Identities=39% Similarity=0.532 Sum_probs=63.9
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+.+.++++.+|++.|||++|+++++++++.+++. . +..++...+++.+|+|++|+|+|
T Consensus 62 ~~L~~~~~~p~~v~~~~~~~p~~~~pm~~l~~~~~~l~~~~~~~------~--~~~~~~~~~~a~~lia~~~~i~a---- 129 (358)
T cd06118 62 KKLASHRALPEHVVEILDLLPKNAHPMDVLRTAVSALGSFDPFA------R--DKSPEARYEKAIRLIAKLPTIAA---- 129 (358)
T ss_pred HHHHHccCCCHHHHHHHHhcCCCCChHHHHHHHHHhhhccCCcc------c--cCCHHHHHHHHHHHHHHHHHHHH----
Confidence 45678889999999999999999999999999999999854332 1 12357888999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~~~~~~ 136 (358)
T cd06118 130 --NIYRNRE 136 (358)
T ss_pred --HHHHHhC
Confidence 9999866
No 32
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=99.10 E-value=3.5e-10 Score=91.26 Aligned_cols=75 Identities=25% Similarity=0.400 Sum_probs=62.8
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
.+|..++.+|+.+.++++.+|+++|||++|++++++++.+++. .. +..|+..++++.+|+|++|+|+|
T Consensus 62 ~~l~~~~~~p~~v~~~~~~~p~~~~pm~~l~~~v~~l~~~~~~-------~~-~~~~~~~~~~a~~lla~~p~i~a---- 129 (356)
T cd06110 62 AQLAAERELPAEIIDLLKLLPKDAHPMDVLRTAVSALALYDPE-------AD-DMSREANLRKAIRLIAKMPTIVA---- 129 (356)
T ss_pred HhhhhccCCCHHHHHHHHhCCCCCCchHHHHHHHHhhhhcCCC-------cc-cCCHHHHHHHHHHHHHHHHHHHH----
Confidence 4567778999999999999999999999999999999974321 11 12357888999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~~~~~~ 136 (356)
T cd06110 130 --AFHRIRN 136 (356)
T ss_pred --HHHHHhC
Confidence 9998865
No 33
>PRK12350 citrate synthase 2; Provisional
Probab=95.71 E-value=0.011 Score=48.38 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.7
Q ss_pred HHHHHHHHhhhhhhccccccchhhhhccC
Q psy14240 68 EDSMDLIAKLPVVAAPSCTLVVFYCLVSP 96 (106)
Q Consensus 68 e~a~rLiAklPtI~A~~~~~~~~yR~~~~ 96 (106)
++++||+||+|||+| ++||++..
T Consensus 99 ~~~~rliA~~pti~a------~~~r~~~g 121 (353)
T PRK12350 99 TARLDLARASVMALS------AVAQSARG 121 (353)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHcC
Confidence 567999999999999 99999883
No 34
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=60.80 E-value=22 Score=25.26 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhhhhccccccchhhhhcc----CCCCCCcccc
Q psy14240 66 VYEDSMDLIAKLPVVAAPSCTLVVFYCLVS----PPDSSDWLRW 105 (106)
Q Consensus 66 ~~e~a~rLiAklPtI~A~~~~~~~~yR~~~----~~~~~~~~~~ 105 (106)
...+.+-++.++-.++- ..|+... +...+||+.|
T Consensus 82 ~~~kl~yvl~ql~~l~~------gl~K~~~MGLLPt~~sDWla~ 119 (124)
T PF06417_consen 82 LLQKLVYVLCQLLGLAL------GLYKCNSMGLLPTTSSDWLAF 119 (124)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHhHccCCCCCccccccc
Confidence 34456677777777777 7888766 6679999987
No 35
>KOG1741|consensus
Probab=56.75 E-value=23 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=31.9
Q ss_pred ChHHHHhhCCCCHHHHH----HHhcCCCCCChHHHHHHHHHH
Q psy14240 5 SPNTGSMRAELPSHVVT----MLNNFPNHLHPMSQFSAAITA 42 (106)
Q Consensus 5 ~~~~l~~~r~lp~~v~~----ii~~~P~~aHPM~~LrtavSa 42 (106)
|.+.+..+..||+.+.+ =|.++|++.||--+..-+|..
T Consensus 28 slk~i~knp~LP~~~r~ea~~kl~alPrns~ptrI~NRCv~T 69 (103)
T KOG1741|consen 28 SLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRIKNRCVFT 69 (103)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHhcCccccchHHHHHHHHhc
Confidence 56788899999987664 578999999999999888874
No 36
>COG4392 Predicted membrane protein [Function unknown]
Probab=23.04 E-value=1.6e+02 Score=20.52 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=31.7
Q ss_pred HHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhc
Q psy14240 9 GSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAA 82 (106)
Q Consensus 9 l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A 82 (106)
+...-++|+-+++.++-.|. +.++|+=..+-+.. +.+.+. .| ..-+++|.+|+++.
T Consensus 27 ~~~~~~LP~~v~~~L~fvP~---------a~ltAL~~p~vl~~--~~g~~~--s~-----~~p~llA~lvav~l 82 (107)
T COG4392 27 LLLKLRLPPWVRRFLSFVPV---------AILTALIAPDVLMP--HGGLDP--SW-----NNPYLLAGLVAVAL 82 (107)
T ss_pred hcccccCCHHHHHHHhhccH---------HHHHHHHhhhHhcc--CCCcch--hh-----ccHHHHHHHHHHHH
Confidence 34456799999999998763 33333322222211 011111 12 33488999999998
Done!