Query psy14240
Match_columns 106
No_of_seqs 120 out of 1021
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:59:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 99.7 3.5E-17 1.2E-21 133.8 9.0 84 7-96 110-193 (435)
2 3l96_A Citrate synthase; quate 99.6 8.5E-16 2.9E-20 125.5 7.7 77 6-95 104-180 (426)
3 2ibp_A Citrate synthase; disul 99.6 5.9E-15 2E-19 119.9 7.4 82 7-95 85-170 (409)
4 3tqg_A 2-methylcitrate synthas 99.5 8.7E-15 3E-19 117.9 7.6 73 6-95 69-141 (375)
5 3msu_A Citrate synthase; helix 99.5 4.9E-15 1.7E-19 121.1 6.0 74 6-95 113-186 (427)
6 3o8j_A 2-methylcitrate synthas 99.5 1.2E-14 4E-19 118.1 7.6 76 6-95 95-170 (404)
7 3hwk_A Methylcitrate synthase; 99.5 1.8E-14 6E-19 117.4 7.9 74 6-95 111-184 (414)
8 1a59_A Citrate synthase; cold- 99.5 5.8E-14 2E-18 112.9 8.0 75 7-95 68-142 (378)
9 1iom_A Citrate synthase; open 99.5 1E-13 3.5E-18 111.6 8.2 75 7-95 66-140 (377)
10 1aj8_A Citrate synthase; hyper 99.5 1.3E-13 4.6E-18 110.7 8.9 76 7-95 64-139 (371)
11 1vgm_A 378AA long hypothetical 99.5 8E-14 2.8E-18 112.2 7.4 73 7-95 68-140 (378)
12 2h12_A Citrate synthase; acido 99.5 4.7E-14 1.6E-18 115.4 6.0 76 7-95 113-188 (436)
13 2ifc_A Citrate synthase; oxalo 99.5 9.9E-14 3.4E-18 111.9 7.5 74 7-95 71-144 (385)
14 1o7x_A Citrate synthase; lyase 99.4 1.3E-13 4.4E-18 111.0 6.9 73 7-95 67-139 (377)
15 2p2w_A Citrate synthase; trans 99.4 1.7E-13 5.7E-18 110.0 6.4 70 7-95 65-134 (367)
16 1vgp_A 373AA long hypothetical 99.4 6.1E-13 2.1E-17 106.8 7.3 71 7-95 66-136 (373)
17 2c6x_A Citrate synthase 1; tri 99.3 1.5E-12 5.2E-17 104.3 6.8 70 7-95 64-133 (363)
18 2l9b_B MRNA 3'-END-processing 32.9 24 0.0008 20.8 1.8 16 13-28 5-20 (53)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=99.70 E-value=3.5e-17 Score=133.83 Aligned_cols=84 Identities=67% Similarity=1.039 Sum_probs=77.1
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+++|+++|||++|+++|++|+++++|.+.|+++.++.++|++.++++++||||+|+|+|
T Consensus 110 ~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~~~~~~~~~~~~a~~LiAk~p~iaa---- 185 (435)
T 1csh_A 110 KEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAA---- 185 (435)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCCccccHHHHHHHHHHHHHHHHHHHH----
Confidence 5788899999999999999999999999999999999999999888887665566789999999999999999999
Q ss_pred cchhhhhccC
Q psy14240 87 LVVFYCLVSP 96 (106)
Q Consensus 87 ~~~~yR~~~~ 96 (106)
++||++..
T Consensus 186 --~~yr~~~~ 193 (435)
T 1csh_A 186 --KIYRNLYR 193 (435)
T ss_dssp --HHHHHHHS
T ss_pred --HHHHHhcc
Confidence 99998874
No 2
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=99.61 E-value=8.5e-16 Score=125.53 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=66.9
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|.+++.||+++.++|++||+++|||++|+++|++|+++ |++..+.++ .+..++++++||||+|+|+|
T Consensus 104 ~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~------~~~~~~~~~-~~~~~~~a~rLiAk~pti~a--- 173 (426)
T 3l96_A 104 KTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAF------YHDSLDVNN-PRHREIAAFRLLSKMPTMAA--- 173 (426)
T ss_dssp HHHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGT------CGGGCCTTS-HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh------CcccccCCC-HHHHHHHHHHHHHHHHHHHH---
Confidence 35688999999999999999999999999999999999973 555544443 47888999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 174 ---~~yr~~~ 180 (426)
T 3l96_A 174 ---MCYKYSI 180 (426)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHC
Confidence 9999876
No 3
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=99.55 E-value=5.9e-15 Score=119.92 Aligned_cols=82 Identities=27% Similarity=0.336 Sum_probs=73.4
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhh----hhhccCCCCCChHhHHHHHHHHHHHhhhhhhc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFA----KAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAA 82 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~----~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A 82 (106)
++|..++.+|+.+.++|+.+|++ |||++|+++|++|++++++. ++|..|..+.++|+..++++++||||+|+|+|
T Consensus 85 ~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~~p~i~a 163 (409)
T 2ibp_A 85 NRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAKMPTIVA 163 (409)
T ss_dssp HHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999 99999999999999987764 45677777766689999999999999999999
Q ss_pred cccccchhhhhcc
Q psy14240 83 PSCTLVVFYCLVS 95 (106)
Q Consensus 83 ~~~~~~~~yR~~~ 95 (106)
++||++.
T Consensus 164 ------~~y~~~~ 170 (409)
T 2ibp_A 164 ------YHYRFSR 170 (409)
T ss_dssp ------HHHHHHT
T ss_pred ------HHHHHHc
Confidence 9999886
No 4
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=99.54 E-value=8.7e-15 Score=117.86 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=63.7
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|..++.||+++.++|++||+++|||++|+++|++|+++ |++. .++..++++++||||+|+|+|
T Consensus 69 ~~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~------~~~~-----~~~~~~~~a~~LiAk~p~i~a--- 134 (375)
T 3tqg_A 69 TKKLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNL------EPEN-----GFENEQNIADRLVAIFPAIQC--- 134 (375)
T ss_dssp HHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------SCCC-----SGGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhc------CCCC-----ChHHHHHHHHHHHHHHHHHHH---
Confidence 35678899999999999999999999999999999999973 2221 157888999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 135 ---~~yr~~~ 141 (375)
T 3tqg_A 135 ---YWYHYSH 141 (375)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHhc
Confidence 9999875
No 5
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=99.54 E-value=4.9e-15 Score=121.12 Aligned_cols=74 Identities=24% Similarity=0.271 Sum_probs=64.0
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|.+++.||+++.++|++||+++|||++|+++|++|+++ |. +. ..||..++++++||||+|+|+|
T Consensus 113 ~~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~------~~-~~---~~~~~~~~~a~rLiAk~pti~a--- 179 (427)
T 3msu_A 113 RQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAE------HI-HN---GQKESQDEVAKNIVAKIATIAA--- 179 (427)
T ss_dssp HHHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH------HH-HT---TSCCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhh------cc-CC---CCHHHHHHHHHHHHHHHHHHHH---
Confidence 35788999999999999999999999999999999999863 31 11 1257788999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 180 ---~~yr~~~ 186 (427)
T 3msu_A 180 ---MAYRHNH 186 (427)
T ss_dssp ---HHHHHHT
T ss_pred ---HHHHHHc
Confidence 9999876
No 6
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=99.53 E-value=1.2e-14 Score=118.13 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=64.3
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|..++.||+++.++|++||+++|||++|+++|++|+++ |++..+.+ .+..++++++||||+|+|+|
T Consensus 95 ~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~------~~~~~d~~--~~~~~~~a~rLiAk~pti~a--- 163 (404)
T 3o8j_A 95 KSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCT------LPEKEGHT--VSGARDIADKLLASLSSILL--- 163 (404)
T ss_dssp HHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------SCCCTTCC--HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhc------CcccccCC--cHHHHHHHHHHHHHHHHHHH---
Confidence 35678899999999999999999999999999999999973 33322222 36778999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 164 ---~~yr~~~ 170 (404)
T 3o8j_A 164 ---YWYHYSH 170 (404)
T ss_dssp ---HHHHHHH
T ss_pred ---HHHHHHc
Confidence 9999865
No 7
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1.8e-14 Score=117.44 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=64.6
Q ss_pred hHHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhcccc
Q psy14240 6 PNTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSC 85 (106)
Q Consensus 6 ~~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~ 85 (106)
.++|..++.||+++.++|++||+++|||++|+++|++|++++ ++.. + ||..++++++||||+|+|+|
T Consensus 111 ~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~------~~~~---~-~~~~~~~a~rLiAk~pti~a--- 177 (414)
T 3hwk_A 111 SQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAED------PDED---D-AAANRAKAMRMMAVLPTIVA--- 177 (414)
T ss_dssp HHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTC------TTTT---C-GGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC------Cccc---C-HHHHHHHHHHHHHHHHHHHH---
Confidence 357888999999999999999999999999999999999743 2211 1 68899999999999999999
Q ss_pred ccchhhhhcc
Q psy14240 86 TLVVFYCLVS 95 (106)
Q Consensus 86 ~~~~~yR~~~ 95 (106)
++||++.
T Consensus 178 ---~~yr~~~ 184 (414)
T 3hwk_A 178 ---IDMRRRR 184 (414)
T ss_dssp ---HHHHHHT
T ss_pred ---HHHHHhC
Confidence 9999875
No 8
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=99.49 E-value=5.8e-14 Score=112.90 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=65.0
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+.+|+++|||++|+++|++|+++ +++..+ .+|+..++++++||||+|+|+|
T Consensus 68 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~~~--~~~~~~~~~a~~Lia~~p~i~a---- 135 (378)
T 1a59_A 68 NFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSVLGAN------HARAQD--SSPEANLEKAMSLLATFPSVVA---- 135 (378)
T ss_dssp HHHHTSCSCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHT------CTTTTC--CSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhc------CCCccC--CCHHHHHHHHHHHHHHHHHHHH----
Confidence 5678889999999999999999999999999999999974 222111 2478899999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 136 --~~y~~~~ 142 (378)
T 1a59_A 136 --YDQRRRR 142 (378)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHHc
Confidence 9999887
No 9
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=99.47 E-value=1e-13 Score=111.55 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=64.9
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+.+|+++|||++|+++|++|+++ +++..+ .+++..++++++||||+|+|+|
T Consensus 66 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~~~--~~~~~~~~~a~~Lia~~p~i~a---- 133 (377)
T 1iom_A 66 AALARRRALPAHLLESFKRYPVSAHPMSFLRTAVSEFGML------DPTEGD--ISREALYEKGLDLIAKFATIVA---- 133 (377)
T ss_dssp HHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHT------CTTTTC--CSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHcCCCCHHHHHHHHhCCcCCCchhHHHHHHHHHhcc------CCCccc--CCHHHHHHHHHHHHHHHHHHHH----
Confidence 5778899999999999999999999999999999999974 222112 2468889999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 134 --~~y~~~~ 140 (377)
T 1iom_A 134 --ANKRLKE 140 (377)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHHc
Confidence 9999886
No 10
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=99.47 E-value=1.3e-13 Score=110.67 Aligned_cols=76 Identities=22% Similarity=0.375 Sum_probs=65.1
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+.+|+++|||++|+++|++|+++ +++ .+...+|+..++++++||||+|+|+|
T Consensus 64 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~-~~~~~~~~~~~~~a~~Lia~~p~i~a---- 132 (371)
T 1aj8_A 64 KELAKSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNI------DDS-GDIPVTPEEVYRIGISVTAKIPTIVA---- 132 (371)
T ss_dssp HHHHTTCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHH------STT-TTSCCCHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHhcc------CCc-ccccCCHHHHHHHHHHHHHHHHHHHH----
Confidence 5678899999999999999999999999999999999973 222 22211478899999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 133 --~~y~~~~ 139 (371)
T 1aj8_A 133 --NWYRIKN 139 (371)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHHc
Confidence 9999886
No 11
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=99.46 E-value=8e-14 Score=112.18 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=64.5
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+++.++|+.+|+++|||++|+++|++|++ +|++..+ ++..++++++||||+|+|+|
T Consensus 68 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~------~~~~~~~----~~~~~~~a~~Lia~~p~i~a---- 133 (378)
T 1vgm_A 68 GIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILAS------IYDPKWN----RATNKELAVQIIAKTATITA---- 133 (378)
T ss_dssp HHHHTCCCCCHHHHHHHTTSCTTSCHHHHHHHHHHHHHH------HHCCCCC----TTTHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCcHHHHHHHHHHHhc------cCCccCC----HHHHHHHHHHHHHHHHHHHH----
Confidence 567888999999999999999999999999999999997 3444322 57888999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 134 --~~y~~~~ 140 (378)
T 1vgm_A 134 --NIYRAKE 140 (378)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhC
Confidence 9999976
No 12
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=99.46 E-value=4.7e-14 Score=115.45 Aligned_cols=76 Identities=28% Similarity=0.334 Sum_probs=62.3
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.||+++.++|+.||+++|||++|+++|++|+++ |++..+..+ .+..++++++||||+|+|+|
T Consensus 113 ~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~------~~~~~~~~~-~~~~~~~a~rLiAk~ptiaa---- 181 (436)
T 2h12_A 113 NTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAF------YPDANDIAI-PANRDLAAMRLIAKIPTIAA---- 181 (436)
T ss_dssp HHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGG------CC---------CCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc------CcccccCCC-HHHHHHHHHHHHHHHHHHHH----
Confidence 5688889999999999999999999999999999999984 443323333 26778999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 182 --~~yr~~~ 188 (436)
T 2h12_A 182 --WAYKYTQ 188 (436)
T ss_dssp --HHHHHHH
T ss_pred --HHHHHhc
Confidence 9999876
No 13
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=99.46 E-value=9.9e-14 Score=111.87 Aligned_cols=74 Identities=12% Similarity=0.199 Sum_probs=65.0
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.||+.+.++|+.+|+++|||++|+++|++|+++ |++. + ..|+..++++++||||+|+|+|
T Consensus 71 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~-~--~~~~~~~~~a~~Lia~~p~i~a---- 137 (385)
T 2ifc_A 71 ETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAAS------ETKF-K--WNKDTDRDVAAEMIGRMSAITV---- 137 (385)
T ss_dssp HHHHGGGCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------CTTC-C--CCTTTHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhc------CCcc-c--CCHHHHHHHHHHHHHHHHHHHH----
Confidence 5778889999999999999999999999999999999973 4433 2 2468889999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 138 --~~y~~~~ 144 (385)
T 2ifc_A 138 --NVYRHIM 144 (385)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhc
Confidence 9999876
No 14
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=99.44 E-value=1.3e-13 Score=110.96 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+++.++|+.+|+++|||++|+++|++|++ +|++. + + ++..++++++||||+|+|+|
T Consensus 67 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~------~~~~~-~--~-~~~~~~~a~~Lia~~p~i~a---- 132 (377)
T 1o7x_A 67 AKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALAS------IDKNF-K--W-KENDKEKAISIIAKMATLVA---- 132 (377)
T ss_dssp HHHHTCCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHH------HCCCC-C--S-SSSHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCcccCCcHHHHHHHHHHHhh------cCCCc-C--C-HHHHHHHHHHHHHHHHHHHH----
Confidence 567888999999999999999999999999999999997 34433 2 2 57888999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 133 --~~y~~~~ 139 (377)
T 1o7x_A 133 --NVYRRKE 139 (377)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhc
Confidence 9999876
No 15
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=99.42 E-value=1.7e-13 Score=109.97 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=59.7
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+.+|+++|||++|+++|++|+++ |++ ++..++++++|||++|+|+|
T Consensus 65 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~-------~~~~~~~a~~lia~~p~i~a---- 127 (367)
T 2p2w_A 65 RKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIHGSM------DGN-------DEDLREKAIRVASVFPTILA---- 127 (367)
T ss_dssp HHHHHTCCCCHHHHHHHTTSCSCCCHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCccCCChHHHHHHHHHHHhcc------CCC-------hHHHHHHHHHHHHHHHHHHH----
Confidence 5678899999999999999999999999999999999973 332 47788999999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 128 --~~y~~~~ 134 (367)
T 2p2w_A 128 --YYYRYSK 134 (367)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHHc
Confidence 9999987
No 16
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=99.38 E-value=6.1e-13 Score=106.85 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=62.9
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+.+.++|+.+|+++|||++|+++|++|+++ ++ .+ ++..++++++||||+|+|+|
T Consensus 66 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~--~~----~~~~~~~a~~Lia~~p~i~a---- 129 (373)
T 1vgp_A 66 EKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIE------DS--KN----DERTDIKGIKLISKFPTIVA---- 129 (373)
T ss_dssp HHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHH------CC--CC----SSCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHhcc------CC--CC----hHHHHHHHHHHHHHHHHHHH----
Confidence 5778899999999999999999999999999999999973 22 21 47778899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 130 --~~y~~~~ 136 (373)
T 1vgp_A 130 --NYARLRK 136 (373)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhc
Confidence 9999886
No 17
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=99.33 E-value=1.5e-12 Score=104.34 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=61.6
Q ss_pred HHHHhhCCCCHHHHHHHhcCCCCCChHHHHHHHHHHhccCchhhhhhccCCCCCChHhHHHHHHHHHHHhhhhhhccccc
Q psy14240 7 NTGSMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAKLPVVAAPSCT 86 (106)
Q Consensus 7 ~~l~~~r~lp~~v~~ii~~~P~~aHPM~~LrtavSaL~~~s~f~~~y~~~~~~~~~~e~~~e~a~rLiAklPtI~A~~~~ 86 (106)
++|..++.+|+++.++|+.+|+++|||++|+++|++|++ . +. + |+..++++++||||+|+|+|
T Consensus 64 ~~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~-~-------~~----~-~~~~~~~a~~Lia~~p~i~a---- 126 (363)
T 2c6x_A 64 DKLAAERNLPEHIERLIQSLPNNMDDMSVLRTVVSALGE-N-------TY----T-FHPKTEEAIRLIAITPSIIA---- 126 (363)
T ss_dssp HHHHHHTSCCHHHHHHHHHSCSSSCHHHHHHHHHHHHCC-S-------SC----C-SSCCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHccCCCHHHHHHHHhCcccCCchHHHHHHHHhhcC-C-------CC----C-hHHHHHHHHHHHHHHHHHHH----
Confidence 567888999999999999999999999999999999996 1 11 1 46677899999999999999
Q ss_pred cchhhhhcc
Q psy14240 87 LVVFYCLVS 95 (106)
Q Consensus 87 ~~~~yR~~~ 95 (106)
++||++.
T Consensus 127 --~~~~~~~ 133 (363)
T 2c6x_A 127 --YRKRWTR 133 (363)
T ss_dssp --HHHHHHT
T ss_pred --HHHHHhc
Confidence 9999976
No 18
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=32.94 E-value=24 Score=20.82 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHhcCCC
Q psy14240 13 AELPSHVVTMLNNFPN 28 (106)
Q Consensus 13 r~lp~~v~~ii~~~P~ 28 (106)
-.+|++|.++|+-+|+
T Consensus 5 ~~iP~eI~dLL~vLPK 20 (53)
T 2l9b_B 5 SELPTEVLDLLSVIPK 20 (53)
T ss_dssp -CCCHHHHHHHHHSBC
T ss_pred CCCCHHHHHHHHHcch
Confidence 3599999999999997
Done!