RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14240
(106 letters)
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 116 bits (293), Expect = 1e-32
Identities = 55/71 (77%), Positives = 65/71 (91%)
Query: 12 RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+M
Sbjct: 115 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 174
Query: 72 DLIAKLPVVAA 82
DLIAKLP VAA
Sbjct: 175 DLIAKLPCVAA 185
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 44.2 bits (105), Expect = 1e-06
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 10 SMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYED 69
+ + + + + F HPM+ AL + F Y+D + + +
Sbjct: 108 TRHTMIHEQITRLFHAFRRDSHPMAVMCGITGAL---AAF---YHDSLDVNN-PRHREIA 160
Query: 70 SMDLIAKLPVVAA 82
+ L++K+P +AA
Sbjct: 161 AFRLLSKMPTMAA 173
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 13 AELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMD 72
E+P V+ + P + AL + K + E E ++
Sbjct: 73 YEVPQEVLDTIYLMPKEADAIGLLEVGTAAL---ASIDKNFKWK-------ENDKEKAIS 122
Query: 73 LIAKLPVVAA 82
+IAK+ + A
Sbjct: 123 IIAKMATLVA 132
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 43.4 bits (103), Expect = 2e-06
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 10 SMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYED 69
+ L + N F HPM+ + AL S F Y D +
Sbjct: 116 TNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGAL---SAF---YPDANDIAI-PANRDLA 168
Query: 70 SMDLIAKLPVVAA 82
+M LIAK+P +AA
Sbjct: 169 AMRLIAKIPTIAA 181
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 43.7 bits (104), Expect = 2e-06
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
++P V+ + P ++ AA+ A+ A +K + + + ++
Sbjct: 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMA-------ASETKFKWNK--DTDRDVAAEM 128
Query: 74 IAKLPVVAA 82
I ++ +
Sbjct: 129 IGRMSAITV 137
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 43.0 bits (102), Expect = 3e-06
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 10 SMRAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYED 69
+ + HV + P H HPMS A + L + + K E E
Sbjct: 117 INKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVL---AAE---HIHNGQK----ESQDEV 166
Query: 70 SMDLIAKLPVVAA 82
+ +++AK+ +AA
Sbjct: 167 AKNIVAKIATIAA 179
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate
metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or
CS, 2-methy synthase; 2.41A {Salmonella enterica}
Length = 404
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
LP++V T+L P HPM ++AL + + + + L
Sbjct: 103 GLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTV--------SGARDIADKL 154
Query: 74 IAKLPVVAA 82
+A L +
Sbjct: 155 LASLSSILL 163
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 41.8 bits (99), Expect = 8e-06
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 13 AELPSHVVTMLNNFPNHLHPMSQFSAAITALNS----ESKFAKAYNDGVHKSKYWEYVYE 68
EL V ++ N HPM AA+ A + K +A + G +K++ E Y
Sbjct: 91 RELHPATVEVIRNLAK-AHPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYR 149
Query: 69 DSMDLIAKLPVVAA 82
+ L+AK+P + A
Sbjct: 150 IAEKLVAKMPTIVA 163
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
E+P V++ + + P + + A L + E ++ +
Sbjct: 75 EVPEQVISTIFSMPRNCDAIGMMETAFGILA-------SIY---DPKWNRATNKELAVQI 124
Query: 74 IAKLPVVAA 82
IAK + A
Sbjct: 125 IAKTATITA 133
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 41.4 bits (98), Expect = 1e-05
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
LP H+ ++ + PN++ MS ++AL + E+++ L
Sbjct: 71 NLPEHIERLIQSLPNNMDDMSVLRTVVSALGEN------TYT-------FHPKTEEAIRL 117
Query: 74 IAKLPVVAA 82
IA P + A
Sbjct: 118 IAITPSIIA 126
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
+L +V ++ HPM A++ L + S E E +M L
Sbjct: 75 KLDENVKGAIDLLSTACHPMDVARTAVSVL---GAN---HARAQDSSP--EANLEKAMSL 126
Query: 74 IAKLPVVAA 82
+A P V A
Sbjct: 127 LATFPSVVA 135
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 40.3 bits (95), Expect = 3e-05
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
+ ++++L P++ HPM AI+ L +D +M +
Sbjct: 119 RVDRSMLSLLAKLPDNCHPMDVVRTAISYL---GAEDPDEDD-------AAANRAKAMRM 168
Query: 74 IAKLPVVAA 82
+A LP + A
Sbjct: 169 MAVLPTIVA 177
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
in RSGI, structural genomics, lyase; 1.50A {Thermus
thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 40.2 bits (95), Expect = 3e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
LP+H++ +P HPMS A++ S+ E +YE +DL
Sbjct: 73 ALPAHLLESFKRYPVSAHPMSFLRTAVSEF---GML---DPTEGDISR--EALYEKGLDL 124
Query: 74 IAKLPVVAA 82
IAK + A
Sbjct: 125 IAKFATIVA 133
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 39.4 bits (93), Expect = 5e-05
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
LP V+ ++ P + HPM I+ L + E VY + +
Sbjct: 71 GLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTP-------EEVYRIGISV 123
Query: 74 IAKLPVVAA 82
AK+P + A
Sbjct: 124 TAKIPTIVA 132
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
LP ++ L PM A++ L E E + L
Sbjct: 73 YLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKND------------ERTDIKGIKL 120
Query: 74 IAKLPVVAA 82
I+K P + A
Sbjct: 121 ISKFPTIVA 129
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project O structural and functional analyses;
HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
ELP+ + +L + P +LH + ++ S E + E ++ +
Sbjct: 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDGND-------------EDLREKAIRV 118
Query: 74 IAKLPVVAA 82
+ P + A
Sbjct: 119 ASVFPTILA 127
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A
{Coxiella burnetii}
Length = 375
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 17/72 (23%)
Query: 14 ELPSHVVTMLNNFPNHLHPMSQFSAAITAL---NSESKFAKAYNDGVHKSKYWEYVYEDS 70
LP + L P HPM + L E+ F E +
Sbjct: 77 SLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPENGF--------------ENEQNIA 122
Query: 71 MDLIAKLPVVAA 82
L+A P +
Sbjct: 123 DRLVAIFPAIQC 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.30
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 15/88 (17%)
Query: 4 TSPNTGSMRAELPSHVVTMLNNFPNHLHP--MSQFSAAITALNSESKFAKAY------ND 55
T+P S+ AE + +N+ + + +++ L + K +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPP 383
Query: 56 GVH-----KSKYW-EYVYEDSMDLIAKL 77
H S W + + D M ++ KL
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL 411
>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle,
dimer, RNA- binding protein, RNA binding protein; 1.95A
{Saccharomyces cerevisiae} SCOP: a.232.1.1
Length = 234
Score = 25.5 bits (55), Expect = 4.4
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 17 SHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDL 73
S + +LN F +HL ++ T L K + YND V E++ E +L
Sbjct: 24 SSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNEL 80
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 25.0 bits (54), Expect = 5.6
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 7 NTGSMRAELPSHVVTMLNN-----FPNHLH----PMSQFSAAITALNSESKFAKAYNDGV 57
NTGS+R +L T+ + F N P S + LN + +
Sbjct: 375 NTGSIRYDLYKGPYTIDSKFIVSPFENIWVNITVPKSVATKVAAKLNDADYISASRLKPP 434
Query: 58 HKSKYWEY 65
H+
Sbjct: 435 HQYDLQVQ 442
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 24.6 bits (53), Expect = 7.3
Identities = 3/23 (13%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 44 NSESKFAKAYNDGVHKSKYWEYV 66
++ + + + K YV
Sbjct: 57 GNQFHGFSWHKQMLPRCKG-RYV 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.129 0.408
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,618,511
Number of extensions: 78999
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 21
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)