RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14240
         (106 letters)



>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 435

 Score = 64.8 bits (157), Expect = 3e-14
 Identities = 55/71 (77%), Positives = 65/71 (91%)

Query: 12  RAELPSHVVTMLNNFPNHLHPMSQFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSM 71
           RA LPSHVVTML+NFP +LHPMSQ SAAITALNSES FA+AY +G++++KYWE+VYED+M
Sbjct: 115 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 174

Query: 72  DLIAKLPVVAA 82
           DLIAKLP VAA
Sbjct: 175 DLIAKLPCVAA 185


>d1x8da1 d.58.4.21 (A:1-104) L-rhamnose mutarotase YiiL
          {Escherichia coli [TaxId: 562]}
          Length = 104

 Score = 24.0 bits (52), Expect = 3.4
 Identities = 4/20 (20%), Positives = 7/20 (35%)

Query: 62 YWEYVYEDSMDLIAKLPVVA 81
            E   E+  + +A   V  
Sbjct: 55 MVEIESEERWNAVASTDVCQ 74


>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 288

 Score = 23.8 bits (50), Expect = 5.2
 Identities = 7/42 (16%), Positives = 13/42 (30%)

Query: 35  QFSAAITALNSESKFAKAYNDGVHKSKYWEYVYEDSMDLIAK 76
           +F  A  A    +      + G H  +YW          + +
Sbjct: 240 KFQDAYNAGGGHNGVFDFPDSGTHSWEYWGAQLNAMKPDLQR 281


>d1d6ga_ g.33.1.1 (A:) Cholecystokinin A receptor, N-domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 22.5 bits (48), Expect = 5.8
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 7/39 (17%)

Query: 71  MDLIAKLPVVAA---PSCTLVV----FYCLVSPPDSSDW 102
           MD++  L V  +   P C L +     +CL  P  S +W
Sbjct: 1   MDVVDSLLVNGSNITPPCELGLENETLFCLDQPRPSKEW 39


>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
           synthase MenF {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 24.0 bits (51), Expect = 5.9
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 72  DLIAKLPVVAAPSCTLVVFYCLVSPPDSSDWLRW 105
           +L+  L      +  + V        D+ D L W
Sbjct: 9   NLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSW 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.408 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,427
Number of extensions: 14666
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 9
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)