BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14241
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1D8J|A Chain A, Solution Structure Of The Central Core Domain Of Tfiie
Beta
pdb|1D8K|A Chain A, Solution Structure Of The Central Core Domain Of Tfiie
Beta
Length = 81
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
+WL TEAL NNPKIEVI+G KY FKP + ++
Sbjct: 52 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVR 81
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 28 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKNE 71
V + +D KGL KL + +KG GI DD E +CE +L E
Sbjct: 135 VCEARDPKGLYKLARAGKIKGFTGI--DDPYEPPLNCEISLGRE 176
>pdb|3M97|X Chain X, Structure Of The Soluble Domain Of Cytochrome C552 With
Its Flexible Linker Segment From Paracoccus
Denitrificans
Length = 140
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 5 STEALQ---NNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLK 42
+ EALQ NPK V++G K F + KI+DR L+ L+
Sbjct: 98 TPEALQEFLTNPKA-VVKGTKMAFAGLPKIEDRANLIAYLE 137
>pdb|3LAS|A Chain A, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
pdb|3LAS|B Chain B, Crystal Structure Of Carbonic Anhydrase From Streptococcus
Mutans To 1.4 Angstrom Resolution
Length = 166
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Query: 38 LKLLKQHDLKGIGGILLDDVRESLPHCEKAL-KNEIIYVTRPADKRKVMFYNDKSAQLDL 96
L L H L+ GG + DDV SL E+ L +EI+ V+ + D AQ
Sbjct: 51 LALGDAHILRNAGGRVTDDVIRSLVISEQQLGTSEIV----------VLHHTDCGAQTFT 100
Query: 97 DEDF-QKLWRSISVDG 111
+ +F ++L R ++VD
Sbjct: 101 NAEFTEQLKRDLAVDA 116
>pdb|1C7M|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6D|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The Reduced
State
pdb|1I6E|A Chain A, Solution Structure Of The Functional Domain Of
Paracoccus Denitrificans Cytochrome C552 In The
Oxidized State
Length = 100
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 5 STEALQ---NNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLK 42
+ EALQ NPK V++G K F + KI+DR L+ L+
Sbjct: 58 TPEALQEFLTNPKA-VVKGTKMAFAGLPKIEDRANLIAYLE 97
>pdb|1QL3|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL3|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Reduced State
pdb|1QL4|A Chain A, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|B Chain B, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|C Chain C, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
pdb|1QL4|D Chain D, Structure Of The Soluble Domain Of Cytochrome C552 From
Paracoccus Denitrificans In The Oxidised State
Length = 99
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 5 STEALQ---NNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLK 42
+ EALQ NPK V++G K F + KI+DR L+ L+
Sbjct: 57 TPEALQEFLTNPKA-VVKGTKMAFAGLPKIEDRANLIAYLE 96
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
pdb|2BE3|B Chain B, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
Length = 226
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Query: 15 IEVIEGNKYIFKPVFKIKD---RKGLLKLLKQHDLKGIGGI-----LLDDVRESLPHCEK 66
IE + G KP+ IK+ R+G+ +HDL+ I G+ +DDV+E + K
Sbjct: 42 IEFVTGR---VKPIESIKEKXARRGITYATLEHDLQDIAGLRVXVQFVDDVKEVVDILHK 98
Query: 67 ALKNEII 73
II
Sbjct: 99 RQDXRII 105
>pdb|4FRF|A Chain A, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
pdb|4FRF|B Chain B, Structural Studies And Protein Engineering Of Inositol
Phosphate Multikinase
Length = 275
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 101 QKLWRSISVDGMILRIRSFYGVDYFSGAGEKAEKA 135
+KL R + VDG L +R F + S G K + A
Sbjct: 141 RKLLRGLDVDGARLTLRKFVSSNSLSDTGSKPDSA 175
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 84 VMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFYGVDYFSGAGEKAEKA 135
V YN++ D + + Q WR VD +I R ++ + + GE +++
Sbjct: 390 VSCYNNRVEIYDAENNPQGRWRKYPVDEIIARDKTSLDITWIKPGGEVDDRS 441
>pdb|2WB6|A Chain A, Crystal Structure Of Afv1-102, A Protein From The
Acidianus Filamentous Virus 1
Length = 130
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 41 LKQHDLKGIGGILLDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQL 94
+K D K +G + D HC+ L + I VTR A + ++ YN+K L
Sbjct: 72 VKLADWKQLGAMCSD-----CYHCKLPLSSFIEIVTRKAKDKFLVMYNEKEVTL 120
>pdb|3POH|A Chain A, Crystal Structure Of An Endo-Beta-N-Acetylglucosaminidase
(Bt_3987) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.55 A Resolution
Length = 451
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 9 LQNNPKIE-VIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGI----LLDDVRESLPH 63
+Q NP ++ +++ N+ + +P+ + + K LL LL HD+ G+ + D RE +
Sbjct: 217 VQCNPNVQYLLDNNETLLQPLRR-RGVKVLLGLLGNHDITGLAQLSEQGAKDFAREVAQY 275
Query: 64 CE 65
C+
Sbjct: 276 CK 277
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 665 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 723
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 665 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 723
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 665 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 723
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1N7O|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase F343v Mutant
Length = 721
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1N7P|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292aF343V
Double Mutant
Length = 721
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|1N7R|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase
W291a/w292a/f343v Mutant Complex With Hexasaccharide
Hyaluronan
Length = 721
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 47 KGIGGIL-LDDVRESLPHCEKALKNEIIYVTRPADKRKVMFYNDKSAQLDLDED-FQKL 103
+G+ GI+ DD ++ + + LK + + + D+ K+ +YN ++ + D++ F+KL
Sbjct: 663 QGVWGIVKYDDSVSTISNQFQVLKRGVYTIRKEGDEYKIAYYNPETQESAPDQEVFKKL 721
>pdb|3RCC|A Chain A, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|B Chain B, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|C Chain C, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|D Chain D, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|E Chain E, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|F Chain F, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|G Chain G, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|H Chain H, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|I Chain I, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|J Chain J, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|K Chain K, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|L Chain L, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|M Chain M, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|N Chain N, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|O Chain O, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|P Chain P, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|Q Chain Q, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
pdb|3RCC|R Chain R, Crystal Structure Of The Streptococcus Agalactiae
Sortase A
Length = 160
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 42 KQHDLKGIGGILLDDVRESLP 62
K H+L IGGI + DV +LP
Sbjct: 8 KSHNLPVIGGIAIPDVEINLP 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,162,731
Number of Sequences: 62578
Number of extensions: 159174
Number of successful extensions: 401
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 29
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)