BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14241
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29084|T2EB_HUMAN Transcription initiation factor IIE subunit beta OS=Homo sapiens
GN=GTF2E2 PE=1 SV=1
Length = 291
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 94/114 (82%), Gaps = 5/114 (4%)
Query: 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
+WL TEAL NNPKIEVI+G KY FKP + ++D+K LL+LL QHD +G+GGILL+D+ E+L
Sbjct: 117 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVRDKKALLRLLDQHDQRGLGGILLEDIEEAL 175
Query: 62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
P+ +KA+K ++I++V RP DK+K++F+NDKS Q +DE+FQKLWRS++VD M
Sbjct: 176 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 228
>sp|P29540|T2EB_XENLA General transcription factor IIE subunit 2 OS=Xenopus laevis
GN=gtf2e2 PE=2 SV=1
Length = 288
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 93/114 (81%), Gaps = 5/114 (4%)
Query: 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
+WL +EAL NNPKIE+I+G KY FKP + +KD+K LL+LL +HD +G+GGILL+D+ E L
Sbjct: 114 QWLMSEALVNNPKIEIIDG-KYAFKPKYNLKDKKALLRLLDKHDQRGLGGILLEDIEEGL 172
Query: 62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
P+ +KA+K ++I++VTRP DK+K++FYNDKS Q +DE+FQKLWRS+ VD M
Sbjct: 173 PNAQKAIKALGDQIVFVTRP-DKKKILFYNDKSCQFTVDEEFQKLWRSVPVDSM 225
>sp|Q2KJF9|T2EB_BOVIN General transcription factor IIE subunit 2 OS=Bos taurus GN=GTF2E2
PE=2 SV=1
Length = 289
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 93/114 (81%), Gaps = 5/114 (4%)
Query: 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
+WL +EAL NNPKIEV++G KY FKP + +KD+K LL+LL QHD +G+GGILL+D+ E L
Sbjct: 115 QWLMSEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDQHDQRGLGGILLEDIEEGL 173
Query: 62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
P+ +KA+K ++I++V RP DK+K++F+NDKS Q +DE+FQKLWRS++VD M
Sbjct: 174 PNSQKAVKALGDQILFVNRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 226
>sp|Q9D902|T2EB_MOUSE General transcription factor IIE subunit 2 OS=Mus musculus
GN=Gtf2e2 PE=2 SV=2
Length = 292
Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 93/114 (81%), Gaps = 5/114 (4%)
Query: 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESL 61
+WL TEAL NNPKIEV++G KY FKP + +KD+K LL+LL HD +G+GGILL+D+ E L
Sbjct: 118 QWLMTEALVNNPKIEVVDG-KYAFKPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGL 176
Query: 62 PHCEKALK---NEIIYVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGM 112
P+ +KA+K ++I++V+RP DK+K++F+NDKS Q +DE+FQKLWRS++VD M
Sbjct: 177 PNSQKAVKALGDQILFVSRP-DKKKILFFNDKSCQFSVDEEFQKLWRSVTVDSM 229
>sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2 OS=Dictyostelium
discoideum GN=gtf2e2 PE=3 SV=1
Length = 276
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 7 EALQNNPKIEVIEGN-KYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 65
E L+NN KI + GN ++ FKP F ++ ++ +L LL + GGIL+ ++ ES + E
Sbjct: 108 ELLRNNEKI-IDHGNDRFSFKPKFNVRTQRDILDLLPNYP----GGILVSELAESYNNAE 162
Query: 66 KALK----NEIIYVTRPADKR-KVMFYNDKSAQLDLDEDFQKLWRSI 107
+K + I+ + A+ ++F ND+ ++ L + +W+SI
Sbjct: 163 SDVKKLKETKQIFAIKAAESACDIIFPNDERLRVPLSSELVDMWKSI 209
>sp|P79011|T2EB_SCHPO Transcription initiation factor IIE subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfa2 PE=1 SV=2
Length = 285
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 9 LQNNPKIEVIEGNK-YIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKA 67
L+ N +I E N+ + FKP+ I+ GLL L K G+ + ++R+ P+
Sbjct: 118 LKKNNRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQ--KTHVGMSIKELRDGWPNVTVE 175
Query: 68 L-----KNEIIYV-TRPADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
L + E++ + TR K+++ NDKS +D++FQ++W I + +
Sbjct: 176 LEELEKQGEVLLLRTRKDGVPKMVWRNDKSCDCHVDKEFQQVWHEIPIPPTL 227
>sp|A3NDL7|CYNS_BURP6 Cyanate hydratase OS=Burkholderia pseudomallei (strain 668) GN=cynS
PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|A1V0I2|CYNS_BURMS Cyanate hydratase OS=Burkholderia mallei (strain SAVP1) GN=cynS
PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|Q62H08|CYNS_BURMA Cyanate hydratase OS=Burkholderia mallei (strain ATCC 23344)
GN=cynS PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|A2S5L0|CYNS_BURM9 Cyanate hydratase OS=Burkholderia mallei (strain NCTC 10229)
GN=cynS PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|A3MRF1|CYNS_BURM7 Cyanate hydratase OS=Burkholderia mallei (strain NCTC 10247)
GN=cynS PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|Q63QS4|CYNS_BURPS Cyanate hydratase OS=Burkholderia pseudomallei (strain K96243)
GN=cynS PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|A3NZD0|CYNS_BURP0 Cyanate hydratase OS=Burkholderia pseudomallei (strain 1106a)
GN=cynS PE=3 SV=1
Length = 156
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 78 PADKRKVMFYNDKSAQLDLDEDFQKLWRSISVDGMI 113
PAD +V+ +A+LDLD+D Q+L ++I V G I
Sbjct: 54 PADAARVV-----AAKLDLDDDAQRLLQTIPVRGSI 84
>sp|Q54HL0|COPG_DICDI Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1
SV=1
Length = 898
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 30 KIKDRKGL-LKLLKQHDLKGIGGILLDDVRESLPHCEKALK 69
+++DR L LKL K++D++ + +L+DDV L + +K+L+
Sbjct: 520 EVRDRATLYLKLFKENDVRYLNKVLMDDVPVPLNNLQKSLE 560
>sp|O49196|KAP2_ARATH Adenylyl-sulfate kinase 2, chloroplastic OS=Arabidopsis thaliana
GN=AKN2 PE=2 SV=1
Length = 293
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 28 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKN 70
V + +D KGL KL + +KG GI DD E+ +CE LK+
Sbjct: 225 VCESRDPKGLYKLARAGKIKGFTGI--DDPYEAPVNCEVVLKH 265
>sp|B6H4I3|GATB_PENCW Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial
OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075
/ Wisconsin 54-1255) GN=Pc13g09720 PE=3 SV=1
Length = 588
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 49 IGGILLDDVRESLPHCEKALKNEII--YVTRPADKRKVMFYNDKSAQLDLDEDFQKLWRS 106
IG LL +RESLP AL ++ P + K + D A+L+ D + RS
Sbjct: 374 IGEDLLSRLRESLPTAPDALLTLLVGSEFNLPIEDAKPLIELDDGARLEYYHDVVDILRS 433
Query: 107 ISVD------GMILRIRSFYGVDYFSGAGEKAEKA 135
+ VD + R+ S + + G KA++A
Sbjct: 434 LQVDRDDKTRAGLARVASNWVLHELGGLLTKADQA 468
>sp|P36145|T2EB_YEAST Transcription initiation factor IIE subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFA2 PE=1
SV=3
Length = 328
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 37 LLKLLK-QHDLKGIGGILLDDVRESLPHCEKALK-----NEIIYVTRPADKR-KVMFYND 89
LLKLL+ Q KGI D+++ P C++ + ++I+ + DK + ++YN
Sbjct: 192 LLKLLRSQVTFKGIS---CKDLKDGWPQCDETINQLEEDSKILVLRTKKDKTPRYVWYNS 248
Query: 90 KSAQLDLDEDFQKLWRSISV 109
+DE+F K+W ++ +
Sbjct: 249 GGNLKCIDEEFVKMWENVQL 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,112,246
Number of Sequences: 539616
Number of extensions: 2020591
Number of successful extensions: 6427
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 6408
Number of HSP's gapped (non-prelim): 32
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)