Query psy14241
Match_columns 136
No_of_seqs 103 out of 166
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:00:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d8j_A General transcription f 99.0 1.3E-10 4.5E-15 79.4 2.6 30 2-32 52-81 (81)
2 2dk8_A DNA-directed RNA polyme 83.7 2.7 9.1E-05 28.1 5.4 41 34-78 16-65 (81)
3 3rco_A Tudor domain-containing 56.6 31 0.0011 23.1 5.7 56 32-87 9-81 (89)
4 3s93_A Tudor domain-containing 53.2 23 0.00079 24.2 4.7 48 36-87 15-79 (102)
5 3hs2_A PHD protein, prevent HO 42.7 34 0.0012 20.4 3.8 32 52-84 4-36 (58)
6 3lap_A Arginine repressor; arg 36.6 63 0.0022 23.9 5.2 53 28-91 31-85 (170)
7 3v4g_A Arginine repressor; vib 35.5 22 0.00077 26.8 2.6 52 28-90 44-97 (180)
8 2nmm_A 14 kDa phosphohistidine 31.8 19 0.00065 26.1 1.6 22 6-27 13-34 (135)
9 3hry_A PHD protein, prevent HO 31.4 58 0.002 20.2 3.7 34 51-85 3-37 (73)
10 3dbo_A Uncharacterized protein 30.9 22 0.00075 24.0 1.7 75 49-124 8-86 (93)
11 3vxv_A Methyl-CPG-binding doma 30.4 34 0.0012 21.7 2.4 33 21-56 27-60 (69)
12 2a6q_A Antitoxin YEFM; YEFM, a 29.5 68 0.0023 20.3 3.9 36 50-86 5-42 (86)
13 3c2i_A Methyl-CPG-binding prot 26.4 36 0.0012 23.3 2.1 33 21-56 45-78 (97)
14 2hw4_A 14 kDa phosphohistidine 26.1 32 0.0011 25.2 1.9 20 8-27 24-43 (144)
15 2zbc_A 83AA long hypothetical 24.7 57 0.0019 19.8 2.7 46 6-52 19-66 (83)
16 2cvi_A 75AA long hypothetical 23.9 44 0.0015 20.7 2.1 46 6-52 19-66 (83)
17 2ga1_A Protein of unknown func 23.3 31 0.0011 23.7 1.3 45 12-65 31-78 (106)
18 2odk_A Hypothetical protein; p 20.8 86 0.003 20.3 3.1 35 51-86 5-40 (89)
19 2htj_A P fimbrial regulatory p 20.3 1.6E+02 0.0053 17.9 5.3 52 34-90 2-62 (81)
20 3g5o_A Uncharacterized protein 20.2 79 0.0027 21.3 2.9 34 52-86 11-46 (108)
No 1
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=99.00 E-value=1.3e-10 Score=79.36 Aligned_cols=30 Identities=63% Similarity=1.123 Sum_probs=28.9
Q ss_pred hhhhhHhhhcCCceEEeeCCeEEeccCCCCC
Q psy14241 2 KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32 (136)
Q Consensus 2 ~~l~~e~L~~npKI~~~~~~~f~ykp~~~Ik 32 (136)
+||+.|||++||||++. +|+|+|||+|+||
T Consensus 52 ~wL~~eaL~~npkI~~~-dgkf~fkP~y~ik 81 (81)
T 1d8j_A 52 QWLMTEALVNNPKIEVI-DGKYAFKPKYNVR 81 (81)
T ss_dssp HHHHTTHHHHCTTEEEC-SSSEEECCTTTCC
T ss_pred HHHHHHHhhcCCceEEe-CCceeccCCcCcC
Confidence 79999999999999999 9999999999986
No 2
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=83.67 E-value=2.7 Score=28.05 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccCCCCceeehhhHhhhhhhH-----HHHhc----CeEEEEcC
Q psy14241 34 RKGLLKLLKQHDLKGIGGILLDDVRESLPHCE-----KALKN----EIIYVTRP 78 (136)
Q Consensus 34 k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~-----~~i~~----~~i~V~r~ 78 (136)
.+.+|++++++ +.||+-++|....|++. .+|++ +.|-+.+.
T Consensus 16 e~~IL~l~~~~----P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~ 65 (81)
T 2dk8_A 16 ENRIIELCHQF----PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRS 65 (81)
T ss_dssp HHHHHHHHHHC----SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhC----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 45699999998 89999999999999933 44444 77777765
No 3
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=56.62 E-value=31 Score=23.13 Aligned_cols=56 Identities=13% Similarity=0.209 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhcccCCCCceeehhhHh---------------hhhhhHHHHhc--CeEEEEcCCCCceEEEe
Q psy14241 32 KDRKGLLKLLKQHDLKGIGGILLDDVRE---------------SLPHCEKALKN--EIIYVTRPADKRKVMFY 87 (136)
Q Consensus 32 k~k~~LL~lL~~~~~~~~~Gi~v~dLkd---------------~~p~~~~~i~~--~~i~V~r~~d~~~vvf~ 87 (136)
-+++++-+.|+.-=....+|+++++|.. ||+++++.|.+ +.+.+.+..++.-+|+.
T Consensus 9 ~~~e~V~k~iRslL~S~k~gvtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~siPdvv~~~~~~~Gev~v~A 81 (89)
T 3rco_A 9 LEGDLVSKMLRAVLQSHKNGVALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRIETSRSGEITCYA 81 (89)
T ss_dssp CHHHHHHHHHHHHHHTCTTCEEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHHTCTTTEEEEECTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCCcCChhhhCcccHHHHHhcccCeEEEEecCCCCEEEEE
Confidence 3455555555544444589999999987 46778888888 55555554456665654
No 4
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=53.22 E-value=23 Score=24.16 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=32.7
Q ss_pred HHHHHHHhcccCCCCceeehhhHh---------------hhhhhHHHHhc--CeEEEEcCCCCceEEEe
Q psy14241 36 GLLKLLKQHDLKGIGGILLDDVRE---------------SLPHCEKALKN--EIIYVTRPADKRKVMFY 87 (136)
Q Consensus 36 ~LL~lL~~~~~~~~~Gi~v~dLkd---------------~~p~~~~~i~~--~~i~V~r~~d~~~vvf~ 87 (136)
.|..+|-. ..+|+++++|.. ||.++++.|.+ +.+-+.+..++.-+|+.
T Consensus 15 ~irslLiS----~K~gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipdvv~~~~~~~G~~~v~a 79 (102)
T 3s93_A 15 EIRSLLIS----TKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPGAGGTVILKA 79 (102)
T ss_dssp HHHHHHHS----SSSCBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTTTEEEECCGGGCCEEEE
T ss_pred HHHHhhee----CCCCcCHHHHHHHHHHHcCCcCCchhcCcCCHHHHHHcCCCeEEEEecCCCCEEEEE
Confidence 34445555 478999999987 56788888988 55555554445556665
No 5
>3hs2_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, toxin-anti antitoxin; 2.20A {Enterobacteria phage P1}
Probab=42.66 E-value=34 Score=20.36 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.8
Q ss_pred eeehhhHhhhhhhHHHHhc-CeEEEEcCCCCceE
Q psy14241 52 ILLDDVRESLPHCEKALKN-EIIYVTRPADKRKV 84 (136)
Q Consensus 52 i~v~dLkd~~p~~~~~i~~-~~i~V~r~~d~~~v 84 (136)
+++.|++..+..+.+.++. +-|+|+|. +++..
T Consensus 4 i~~~ear~~l~~ll~~v~~~e~v~Itr~-g~~~a 36 (58)
T 3hs2_A 4 INFRTARGNLSEVLNNVEAGEEVEITRR-GREPA 36 (58)
T ss_dssp EEHHHHHHSHHHHHHHHHTTCCEEEECT-TSCCE
T ss_pred ECHHHHHHhHHHHHHHHhCCCcEEEEEC-CCceE
Confidence 6889999999999888866 77888885 34433
No 6
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=36.60 E-value=63 Score=23.86 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCceeehhhHhhhhhhHHHHhc-CeEEEEcCCCCc-eEEEecCCC
Q psy14241 28 VFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCEKALKN-EIIYVTRPADKR-KVMFYNDKS 91 (136)
Q Consensus 28 ~~~Ik~k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~~~i~~-~~i~V~r~~d~~-~vvf~ND~~ 91 (136)
.+.|.+.++|+++|++. |+.|. =..+-.||++ +.+=|...+.+- +...+++..
T Consensus 31 ~~~I~tQeEL~~~L~~~------Gi~vT-----QATlSRDikEL~lvKv~~~~G~~~~Y~lp~~~~ 85 (170)
T 3lap_A 31 SAQVRSQNELAALLAAE------GIEVT-----QATLSRDLEELGAVKLRGADGGTGIYVVPEDGS 85 (170)
T ss_dssp HSCCCSHHHHHHHHHHT------TCCCC-----HHHHHHHHHHHTCEEECCTTCTTCEEECCC---
T ss_pred hCCCCCHHHHHHHHHHc------CCCcC-----chhHHHHHHHcCcEEeecCCCCEEEEEECcccc
Confidence 37899999999999995 88764 3567789999 877766543333 555566554
No 7
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=35.49 E-value=22 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.113 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCceee-hhhHhhhhhhHHHHhc-CeEEEEcCCCCceEEEecCC
Q psy14241 28 VFKIKDRKGLLKLLKQHDLKGIGGILL-DDVRESLPHCEKALKN-EIIYVTRPADKRKVMFYNDK 90 (136)
Q Consensus 28 ~~~Ik~k~~LL~lL~~~~~~~~~Gi~v-~dLkd~~p~~~~~i~~-~~i~V~r~~d~~~vvf~ND~ 90 (136)
.+.|.+.++|+++|++. |+.+ .. +.+-.||++ +.+=|.....+-+...+++.
T Consensus 44 ~~~I~TQeEL~~~L~~~------Gi~viTQ-----ATvSRDIkELglvKv~~~~G~~~Y~lp~~~ 97 (180)
T 3v4g_A 44 EERFGSQGEIVEALKQE------GFENINQ-----SKVSRMLTKFGAVRTRNAKMEMVYCLPTEL 97 (180)
T ss_dssp HTCCCSHHHHHHHHHHT------TCTTCCH-----HHHHHHHHHTTCEEEECTTSCEEEECC---
T ss_pred hCCcCCHHHHHHHHHHC------CCcccCH-----HHHHHHHHHcCCEEeeCCCCCEEEEeCCcc
Confidence 37899999999999995 7765 32 345678888 77666654222333344443
No 8
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=31.77 E-value=19 Score=26.06 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=18.8
Q ss_pred hHhhhcCCceEEeeCCeEEecc
Q psy14241 6 TEALQNNPKIEVIEGNKYIFKP 27 (136)
Q Consensus 6 ~e~L~~npKI~~~~~~~f~ykp 27 (136)
...|.+-|.|..++.|+|.|-=
T Consensus 13 ~~~L~~vP~V~Id~~G~fKYVL 34 (135)
T 2nmm_A 13 VADLALIPDVDIDSDGVFKYVL 34 (135)
T ss_dssp CCCGGGSCSEEECSSSEEEEEE
T ss_pred hhhccCCCeEEECCCCcEEEEE
Confidence 4569999999999889999963
No 9
>3hry_A PHD protein, prevent HOST death protein; intrinsic disorder, DOC, antitoxin; 2.25A {Escherichia coli} PDB: 3k33_B 3kh2_E
Probab=31.38 E-value=58 Score=20.25 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.5
Q ss_pred ceeehhhHhhhhhhHHHHhc-CeEEEEcCCCCceEE
Q psy14241 51 GILLDDVRESLPHCEKALKN-EIIYVTRPADKRKVM 85 (136)
Q Consensus 51 Gi~v~dLkd~~p~~~~~i~~-~~i~V~r~~d~~~vv 85 (136)
-+++.|++.....+.+.++. +-|+|+|. +++.+|
T Consensus 3 ~v~~~ear~~l~~ll~~v~~~e~v~Itr~-g~~~av 37 (73)
T 3hry_A 3 SINFRTARGNLSEVLNNVEAGEEVEITRR-GREPAV 37 (73)
T ss_dssp EEEHHHHHHHHHHHHHHHTTTCCEEEECS-SSCCEE
T ss_pred EECHHHHHHhHHHHHHHHhCCCcEEEEEC-CCceEE
Confidence 37889999999999888855 77888885 344333
No 10
>3dbo_A Uncharacterized protein; toxin antitoxin complex, vapbc, structural genomics, PSI-2, protein structure initiative; 1.76A {Mycobacterium tuberculosis}
Probab=30.86 E-value=22 Score=23.97 Aligned_cols=75 Identities=9% Similarity=0.086 Sum_probs=18.8
Q ss_pred CCceeehhhHhhhhhhHHHHhc-CeEEEEcCCCCc--eEEEecCCCCCCCCCHHHHHhhhhccCCchhhHHHHhc-CCCC
Q psy14241 49 IGGILLDDVRESLPHCEKALKN-EIIYVTRPADKR--KVMFYNDKSAQLDLDEDFQKLWRSISVDGMILRIRSFY-GVDY 124 (136)
Q Consensus 49 ~~Gi~v~dLkd~~p~~~~~i~~-~~i~V~r~~d~~--~vvf~ND~~~~~~vD~efk~lW~~v~vP~~~d~~L~~~-Glkp 124 (136)
..-|++.|+|.....+.+.++. +.|+|+|. .++ ++|=+....-...--++|..+|+.......-...|.++ |.+.
T Consensus 8 M~ti~i~Eak~~ls~ll~~v~~GE~vvITr~-GkPvA~Lvp~~~~~r~~~~~~~l~~~lr~~p~d~~~~~d~~~~~~~~~ 86 (93)
T 3dbo_A 8 MSEVASRELRNDTAGVLRRVRAGEDVTITVS-GRPVAVLTPVRPRRRRWLSKTEFLSRLRGAQADPGLRNDLAVLAGDTT 86 (93)
T ss_dssp ----------------------------------------------CBCEEHHHHHHHHTTCCBCTTHHHHHHHHHCCBC
T ss_pred hceecHHHHHHhHHHHHHHHHCCCcEEEEEC-CEEEEEEecCccccccccCHHHHHHHHHcCCCCccHHHHHHHHhCCch
Confidence 3457889999999999999888 77888875 232 44433322222334578999998876522112666655 6544
No 11
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=30.42 E-value=34 Score=21.75 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=24.9
Q ss_pred CeEEeccC-CCCCCHHHHHHHHHhcccCCCCceeehh
Q psy14241 21 NKYIFKPV-FKIKDRKGLLKLLKQHDLKGIGGILLDD 56 (136)
Q Consensus 21 ~~f~ykp~-~~Ik~k~~LL~lL~~~~~~~~~Gi~v~d 56 (136)
+.|-|-|. -.+||+.+|.++|..+ +..++.+++
T Consensus 27 DvyY~sP~Gkk~RSk~ev~~yL~~~---~~~~l~~~~ 60 (69)
T 3vxv_A 27 DVYFISPQGLKFRSKRSLANYLLKN---GETFLKPED 60 (69)
T ss_dssp EEEEECTTSCEECSHHHHHHHHHHH---CCCCCCGGG
T ss_pred eEEEEcCCCCEeeCHHHHHHHHHhC---CCCCCCHHH
Confidence 35777788 5899999999999996 223566654
No 12
>2a6q_A Antitoxin YEFM; YEFM, antitoxin, addiction modules, RNAse, inhibitor, toxin inhibitor/toxin complex; 2.05A {Escherichia coli} SCOP: d.306.1.1
Probab=29.47 E-value=68 Score=20.26 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=26.9
Q ss_pred CceeehhhHhhhhhhHHHHhc--CeEEEEcCCCCceEEE
Q psy14241 50 GGILLDDVRESLPHCEKALKN--EIIYVTRPADKRKVMF 86 (136)
Q Consensus 50 ~Gi~v~dLkd~~p~~~~~i~~--~~i~V~r~~d~~~vvf 86 (136)
.=+++.|++..+..+.+.+.+ +-|+|+|. +++.+|-
T Consensus 5 ~~v~~~e~r~~l~~~~~~v~~~~epviItr~-g~~~avl 42 (86)
T 2a6q_A 5 RTISYSEARQNLSATMMKAVEDHAPILITRQ-NGEACVL 42 (86)
T ss_dssp EEEEHHHHHHTHHHHHHHHHHHTCCEEEECT-TSCEEEE
T ss_pred eEECHHHHHHHHHHHHHHHHhcCCcEEEEeC-CCccEEE
Confidence 347889999999999988865 67888885 4454443
No 13
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=26.38 E-value=36 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=25.0
Q ss_pred CeEEeccC-CCCCCHHHHHHHHHhcccCCCCceeehh
Q psy14241 21 NKYIFKPV-FKIKDRKGLLKLLKQHDLKGIGGILLDD 56 (136)
Q Consensus 21 ~~f~ykp~-~~Ik~k~~LL~lL~~~~~~~~~Gi~v~d 56 (136)
+.|-|-|. -.+||+.+|.++|..+ +..++.+++
T Consensus 45 DvYY~sP~GkkfRSk~ev~ryL~~~---g~~~~~~~~ 78 (97)
T 3c2i_A 45 DVYLINPQGKAFRSKVELIMYFEKV---GDTSLDPND 78 (97)
T ss_dssp EEEEECTTSCEECSHHHHHHHHHHH---TCCSSCTTT
T ss_pred eEEEECCCCCEEECHHHHHHHHHHC---CCCCCCHhh
Confidence 36888888 5899999999999985 233555544
No 14
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=26.14 E-value=32 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=17.5
Q ss_pred hhhcCCceEEeeCCeEEecc
Q psy14241 8 ALQNNPKIEVIEGNKYIFKP 27 (136)
Q Consensus 8 ~L~~npKI~~~~~~~f~ykp 27 (136)
+|.+-|.|..++.|+|.|-=
T Consensus 24 ~L~~vP~V~Id~~G~fKYVL 43 (144)
T 2hw4_A 24 DLALIPDVDIDSDGVFKYVL 43 (144)
T ss_dssp CGGGSCSEEECCSEEEEEEE
T ss_pred ccccCCeEEECCCCcEEEEE
Confidence 38999999999889999963
No 15
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=24.71 E-value=57 Score=19.77 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=34.3
Q ss_pred hHhhhcCCceEEe--eCCeEEeccCCCCCCHHHHHHHHHhcccCCCCce
Q psy14241 6 TEALQNNPKIEVI--EGNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGI 52 (136)
Q Consensus 6 ~e~L~~npKI~~~--~~~~f~ykp~~~Ik~k~~LL~lL~~~~~~~~~Gi 52 (136)
.++|.+.|-|..- =.|.|.|--.-..+|-++|-+++.+. .....|+
T Consensus 19 ~~~l~~~peV~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~-l~~~~gV 66 (83)
T 2zbc_A 19 FERLKSMSEVTEVHVVYGVYDIVVKVEADSMDKLKDFVTNT-IRKLPKV 66 (83)
T ss_dssp HHHHTTCTTEEEEEECSSSCSEEEEEECSSHHHHHHHHHHT-GGGSTTE
T ss_pred HHHHhCCCCeEEEEEEeccCCEEEEEEECCHHHHHHHHHHH-hcCCCCE
Confidence 4678999998743 23889999888899999999998743 2344555
No 16
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=23.94 E-value=44 Score=20.69 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=35.0
Q ss_pred hHhhhcCCceEEee--CCeEEeccCCCCCCHHHHHHHHHhcccCCCCce
Q psy14241 6 TEALQNNPKIEVIE--GNKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGI 52 (136)
Q Consensus 6 ~e~L~~npKI~~~~--~~~f~ykp~~~Ik~k~~LL~lL~~~~~~~~~Gi 52 (136)
.++|++.|-|..-- .|.|.|--+-.++|-++|-+++.+. .....|+
T Consensus 19 ~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~~~-l~~~~gV 66 (83)
T 2cvi_A 19 MEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFITEK-IRKMPEI 66 (83)
T ss_dssp HHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHHTT-GGGCTTE
T ss_pred HHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHHHH-hccCCCE
Confidence 46789999987531 3889999998899999999999753 3445565
No 17
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=23.33 E-value=31 Score=23.73 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCceEEeeC---CeEEeccCCCCCCHHHHHHHHHhcccCCCCceeehhhHhhhhhhH
Q psy14241 12 NPKIEVIEG---NKYIFKPVFKIKDRKGLLKLLKQHDLKGIGGILLDDVRESLPHCE 65 (136)
Q Consensus 12 npKI~~~~~---~~f~ykp~~~Ik~k~~LL~lL~~~~~~~~~Gi~v~dLkd~~p~~~ 65 (136)
.++|..+|+ |+=+++-+ .| .-..++.+|.. |++.+++.+.||++.
T Consensus 31 ~~~I~~dP~i~~G~P~I~GT-RI-~V~~Il~~l~~-------G~s~eeIl~~yP~Lt 78 (106)
T 2ga1_A 31 QNPIQITPGVCGGQARIRNT-RI-PVWTLVAYRQQ-------GAPDKELLANYPGLT 78 (106)
T ss_dssp HCSEECCTTSGGGCCEETTS-CC-BHHHHHHHHHT-------TCCHHHHHHHSTTCC
T ss_pred cCCeEeCccccCCccEEecc-ee-eHHHHHHHHHc-------CCCHHHHHHHCCCCC
Confidence 367888885 66666654 12 34667777665 999999999999853
No 18
>2odk_A Hypothetical protein; prevent-HOST-death protein, structural genomics, APC7367, PS protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: d.306.1.1
Probab=20.77 E-value=86 Score=20.26 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=26.8
Q ss_pred ceeehhhHhhhhhhHHHHhc-CeEEEEcCCCCceEEE
Q psy14241 51 GILLDDVRESLPHCEKALKN-EIIYVTRPADKRKVMF 86 (136)
Q Consensus 51 Gi~v~dLkd~~p~~~~~i~~-~~i~V~r~~d~~~vvf 86 (136)
-+++.|+|..+..+.+.+.. +-|+|+|. +++.+|-
T Consensus 5 ~~~~~eak~~ls~l~~~v~~~epv~ITr~-G~~~avl 40 (89)
T 2odk_A 5 VWPVQDAKARFSEFLDACITEGPQIVSRR-GAEEAVL 40 (89)
T ss_dssp EEEHHHHHHTHHHHHHHHHHTCCEEEEET-TEEEEEE
T ss_pred eEeHHHHHHHHHHHHHHHhcCCCEEEEEC-CcceEEE
Confidence 47889999999999988887 67888875 3454443
No 19
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=20.28 E-value=1.6e+02 Score=17.90 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccCCCCceeehhhHhhh----hhhHHHHhc----CeEEEEcCCCC-ceEEEecCC
Q psy14241 34 RKGLLKLLKQHDLKGIGGILLDDVRESL----PHCEKALKN----EIIYVTRPADK-RKVMFYNDK 90 (136)
Q Consensus 34 k~~LL~lL~~~~~~~~~Gi~v~dLkd~~----p~~~~~i~~----~~i~V~r~~d~-~~vvf~ND~ 90 (136)
+..+|.+|... +++++.||.+.. +.+...|+. +.|...+...+ ...+..++.
T Consensus 2 r~~Il~~L~~~-----~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNRH-----NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHHS-----CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHHc-----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 46789999873 579999998854 445555554 66544333233 334444444
No 20
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=20.15 E-value=79 Score=21.26 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=25.9
Q ss_pred eeehhhHhhhhhhHHHHhc--CeEEEEcCCCCceEEE
Q psy14241 52 ILLDDVRESLPHCEKALKN--EIIYVTRPADKRKVMF 86 (136)
Q Consensus 52 i~v~dLkd~~p~~~~~i~~--~~i~V~r~~d~~~vvf 86 (136)
+++.+++..+..+.+.+.+ +-|+|++. +++.+|-
T Consensus 11 is~sear~~l~~ll~~v~~~~epViITr~-G~~~aVl 46 (108)
T 3g5o_A 11 LPISTIKGKLNEFVDAVSSTQDQITITKN-GAPAAVL 46 (108)
T ss_dssp EEHHHHTTCHHHHHHHHHTSSCEEEEEET-TEEEEEE
T ss_pred eeHHHHHHHHHHHHHHHHhhCCcEEEEEC-CCCcEEE
Confidence 5789999999999888865 77888875 3455544
Done!