RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14241
         (136 letters)



>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 50.2 bits (120), Expect = 6e-10
 Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 2  KWLSTEALQNNPKIEVIEGNKYIFKPVFKIK 32
          +WL TEAL NNPKIEVI+G KY FKP + ++
Sbjct: 52 QWLMTEALVNNPKIEVIDG-KYAFKPKYNVR 81


>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans
          [TaxId: 266]}
          Length = 99

 Score = 25.3 bits (55), Expect = 1.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 12 NPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQ 43
          NPK  V++G K  F  + KI+DR  L+  L+ 
Sbjct: 67 NPK-AVVKGTKMAFAGLPKIEDRANLIAYLEG 97


>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
           1071]}
          Length = 105

 Score = 23.1 bits (49), Expect = 9.4
 Identities = 5/31 (16%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 12  NPKIEVIEGNKYIFKPVFKIKDRKGLLKLLK 42
           +P+ +++ G K  +      + R  ++  L+
Sbjct: 73  HPQ-KIVPGTKMGYPGQPDPQKRADIIAYLE 102


>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 23.1 bits (49), Expect = 9.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 12  NPKIEVIEGNKYIFKPVFKIKDRKGLLKLLKQ 43
           NPK + I G K  F  + K KDR  L+  LK+
Sbjct: 75  NPK-KYIPGTKMAFGGLKKEKDRNDLITYLKK 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 530,987
Number of extensions: 23565
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 9
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)