BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14244
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 24/153 (15%)
Query: 19 IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMK 68
H + YKC +C + + H KC C K F Q+++L +H
Sbjct: 43 THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTG 102
Query: 69 PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNL 128
+PY C C KSF+ +L HQ H+G +P+KC C KSF + N TH T+T
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN-LHTHQRTHTGE-- 159
Query: 129 AQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F R L HQ
Sbjct: 160 -----------KPYKCPECGKSFSRRDALNVHQ 181
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 14/125 (11%)
Query: 37 LSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
L + C C K F + L H +PYKC C KSF++ ++L HQ H+G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 97 IRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMN 156
+P+KC C KSF + N H T+T KPY C C + F +
Sbjct: 75 EKPYKCPECGKSFSQRAN-LRAHQRTHTGE-------------KPYACPECGKSFSQLAH 120
Query: 157 LISHQ 161
L +HQ
Sbjct: 121 LRAHQ 125
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 2 FTQTPNLVLFSQQTLLCIHGNDNAYKCHQCQR----LIFLSANAGVH------KCEYCHK 51
F+Q NL + H + Y C +C + L L A+ H KC C K
Sbjct: 87 FSQRANLRAHQR-----THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 52 VFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
F ++ +L +H +PYKC C KSF+ LN HQ H+G +
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+KC C K F Q S+L H +PYKC C KSF+ S +L HQ H+G +P+KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 104 TCDKSF 109
C KSF
Sbjct: 65 ECGKSF 70
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+PYKC C KSF+ S NL HQ H+G +P+KC C KSF +Q + H T+T
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSF-SQSSDLQKHQRTHTGE--- 58
Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +L HQ
Sbjct: 59 ----------KPYKCPECGKSFSRSDHLSRHQ 80
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
S ++G HKCE C K F ++ L +H +PYKC TC+ + +S +LN H IHS
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 98 RPFKCTTC 105
RPFKC C
Sbjct: 63 RPFKCQIC 70
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
P+KC+ C K F+ L TH H+G++P+KC TCD + +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD 48
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
C++C + F + +LL H RPY CD C K+F +L H+ IHS +PFKC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 106 DKSF 109
K F
Sbjct: 80 GKGF 83
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
C+ CHK F +Q L H K +P+KC C K F S+ L H+ +H
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 65 PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
P + + C C + FT S NL H+ H+ RP+ C C K+F Q
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQ------------ 58
Query: 125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
+L H ++S KP++C C + F L H+
Sbjct: 59 -DHLRDHRYIHSK-EKPFKCQECGKGFCQSRTLAVHK 93
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 20/121 (16%)
Query: 46 CEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFK 101
C Y C+K + + S L H+ +PY+CD CE+ F+ S L HQ H+G++PF+
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR--CSQFFGDRMNLIS 159
C TC + F S H T+T+++ + KP+ C C + F L+
Sbjct: 69 CKTCQRKFSR-----SDHLKTHTRTHTGE---------KPFSCRWPSCQKKFARSDELVR 114
Query: 160 H 160
H
Sbjct: 115 H 115
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIH 94
C+ C + F + L +H +P+ C +C+K F S L H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTH 119
Q + R YKCD C KSF++S +L+ H+ H+G +P+KC C K+F+ + + H
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+KC+ C K F S L H +PYKCD C K+F +L H +H+G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNL 157
R +KC C KSF + + S H T+T KPY+CD C + F R +L
Sbjct: 17 RRYKCDECGKSFSHSSD-LSKHRRTHTGE-------------KPYKCDECGKAFIQRSHL 62
Query: 158 ISH 160
I H
Sbjct: 63 IGH 65
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ C C KSF S L+TH LIHS RP+ C C K F + KS++ +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-------------HQKSDMKKH 48
Query: 132 SCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
+ +++ KP++C C + F NLI+H
Sbjct: 49 TFIHT-GEKPHKCQVCGKAFSQSSNLITH 76
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
C+ C K F + S+L +H RPY C C K F ++ H IH+G +P KC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 106 DKSFVNQIN 114
K+F N
Sbjct: 64 GKAFSQSSN 72
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 35 IFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+ + ++ + C+YC K F Q+S + H +P+KC C K+F+ S NL TH H
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Query: 95 SG 96
+G
Sbjct: 81 TG 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCD 106
C K+F S++ H PR + C C K+F S L HQL+H+G +PF+CT C
Sbjct: 13 CTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC--DRCSQFFGDRMNLISH 160
K F N TH +T +PY C D C++ F NL SH
Sbjct: 72 KRFSLDFN-LRTHVRIHTGD-------------RPYVCPFDGCNKKFAQSTNLKSH 113
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 14 QTLLCIH-GNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPY 72
+T+ C H G ++ + R + VH C C K F + S L H +P+
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 73 KC--DTCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKS 126
+C + C K F+ NL TH IH+G RP+ C C+K F N S H T+ K+
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS-HILTHAKA 120
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 43 VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIR 98
+H C+Y C KV+ + S L +H +PYKC + C+ F S L H H+G +
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 99 PFKCTTCDKSF 109
PF+C C++SF
Sbjct: 75 PFQCGVCNRSF 85
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 68 KPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTY 123
K R + CD C K +T S +L H H+G +P+KCT CD F T Y
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH----Y 67
Query: 124 TKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
K A KP+QC C++ F +L H
Sbjct: 68 RKHTGA----------KPFQCGVCNRSFSRSDHLALH 94
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
E C F + L H +P++C C +SF+ S +L H H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKS 108
C K F +S H + RPY C C K F +L H IH+GI+P++C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 109 FV 110
F+
Sbjct: 75 FM 76
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 77 CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNS 136
C KSFT+ + H +H G+RP+ C C K F K +L H +++
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFK-------------MKHHLVGHMKIHT 61
Query: 137 HFPKPYQCDRCSQFFGDRMNLISH 160
KPY+C+ C++ F R + H
Sbjct: 62 GI-KPYECNICAKRFMWRDSFHRH 84
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F++S NL H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F S+L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 70 RKFAR-----SDERKRHTKIHLRQ 88
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 38 SANAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLI 93
+ H C+Y C K + + S L +H +PY CD C F S L H
Sbjct: 1 GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Query: 94 HSGIRPFKCTTCDKSF 109
H+G RPF+C CD++F
Sbjct: 61 HTGHRPFQCQKCDRAF 76
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 77 CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCM 134
C K++T S +L H H+G +P+ C C F + + + H +T
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA-RSDELTRHYRKHTGH-------- 64
Query: 135 NSHFPKPYQCDRCSQFFGDRMNLISH 160
+P+QC +C + F +L H
Sbjct: 65 -----RPFQCQKCDRAFSRSDHLALH 85
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
C F + L H RP++C C+++F+ S +L H H
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ NL+TH IH+G +PF+C C ++F Q + + H T+T
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQAS-LNAHIRTHTGE- 60
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
KP+ CD C + F
Sbjct: 61 ------------KPFACDICGRKFA 73
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F Q+++L +H +P++C C ++F+ +LN H H+G +PF C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPT-YTKSNLAQ 130
+ F + HT T +TK +L Q
Sbjct: 70 RKFA------TLHTRTRHTKIHLRQ 88
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F QQ+SL +H +P+ CD C + F H IH
Sbjct: 36 QCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F Q SL H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 70 RKFAR-----SDERKRHTKIHLRQ 88
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S +L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 40 NAGVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDT--CEKSFTNSQNLNTHQLIHS 95
H C+Y C K + + S L +H +PY CD C F S L H H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 96 GIRPFKCTTCDKSF 109
G RPF+C CD++F
Sbjct: 62 GHRPFQCQKCDRAF 75
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 77 CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCM 134
C K++T S +L H H+G +P+ C C F + + + H +T
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFA-RSDELTRHYRKHTGH-------- 63
Query: 135 NSHFPKPYQCDRCSQFFGDRMNLISH 160
+P+QC +C + F +L H
Sbjct: 64 -----RPFQCQKCDRAFSRSDHLALH 84
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
C F + L H RP++C C+++F+ S +L H H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 26/90 (28%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ NL+TH IH+G +PF+C C ++F
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF------------------ 44
Query: 128 LAQHSCMNSHF-----PKPYQCDRCSQFFG 152
+QH+ +N H KP+ CD C + F
Sbjct: 45 -SQHTGLNQHIRTHTGEKPFACDICGRKFA 73
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F Q+++L +H +P++C C ++F+ LN H H+G +PF C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 107 KSFV 110
+ F
Sbjct: 70 RKFA 73
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F Q + L H +P+ CD C + F + H IH
Sbjct: 36 QCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHT 120
+PYKCD C+ SF NL +H+ +H+G +P++C C F N THT
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN-LKTHT 65
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+KC+ C F + +L SH +PY+C+ C F NL TH IHSG +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNL 157
+P+KC C SF K NLA H +++ KPY+C+ C F NL
Sbjct: 16 KPYKCDRCQASFR-------------YKGNLASHKTVHT-GEKPYRCNICGAQFNRPANL 61
Query: 158 ISH 160
+H
Sbjct: 62 KTH 64
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+CDRC F + NL SH+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHK 37
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S +L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F + + L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 70 RKFAR-----SDERKRHTKIHLRQ 88
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F + L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 70 RKFAR-----SDERKRHTKIHLRQ 88
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F + + L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 70 RKFAR-----SDERKRHTKIHLRQ 88
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 57
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 58 TGE---------KPFACDICGRKFA 73
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F + L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 107 KSFVN 111
+ F
Sbjct: 70 RKFAR 74
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 70 RPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C ++C++ F+ S L H IH+G +PF+C C ++F S H T+ +++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSR-----SDHLTTHIRTH 56
Query: 128 LAQHSCMNSHFPKPYQCDRCSQFFG 152
+ KP+ CD C + F
Sbjct: 57 TGE---------KPFACDICGRKFA 72
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
E C + F + L H +P++C C ++F+ S +L TH H+G +PF C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQ 130
+ F S +TK +L Q
Sbjct: 69 RKFAR-----SDERKRHTKIHLRQ 87
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+C C + F + L +H +P+ CD C + F S H IH
Sbjct: 35 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
+PY C C K+F+ S L HQ +H+G +P+KC C K+F
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
+ C C K F + S L+ H +PYKC C K+F+ + L HQ IH+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNL 157
+P+ C C K+F S L QH +++ KPY+C C + F L
Sbjct: 13 KPYGCVECGKAFSRS-------------SILVQHQRVHTG-EKPYKCLECGKAFSQNSGL 58
Query: 158 ISHQ 161
I+HQ
Sbjct: 59 INHQ 62
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 59 LLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTST 118
LL++ P+M+P ++C++ F+ S L H IH+G +PF+C C ++F ++ + +T
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF-SRSDHLTT 67
Query: 119 HTPTYT 124
H T+T
Sbjct: 68 HIRTHT 73
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
E C + F + L H +P++C C ++F+ S +L TH H+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 20/127 (15%)
Query: 38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL---IH 94
S ++GV +C CHK F + L HN +P++C C K + +NL H+ ++
Sbjct: 3 SGSSGV-ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPK-PYQCDRCSQFFGD 153
+ F C+ C ++F ++ L H M SH + PY+C CSQ F
Sbjct: 62 RSEQVFTCSVCQETFRRRM-------------ELRLH--MVSHTGEMPYKCSSCSQQFMQ 106
Query: 154 RMNLISH 160
+ +L SH
Sbjct: 107 KKDLQSH 113
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 20 HGNDNAYKCHQCQRLIFLSANAGVHK-------------CEYCHKVFDQQSSLLSHNCPQ 66
H + ++C +C + F N H+ C C + F ++ L H
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 67 MKPRPYKCDTCEKSFTNSQNLNTHQL-IHSG 96
PYKC +C + F ++L +H + +HSG
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 14/67 (20%)
Query: 95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
SG +C TC K F+++ Y K + +H+ KP++C +C + + +
Sbjct: 3 SGSSGVECPTCHKKFLSKY---------YLKVHNRKHT-----GEKPFECPKCGKCYFRK 48
Query: 155 MNLISHQ 161
NL+ H+
Sbjct: 49 ENLLEHE 55
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 36/150 (24%)
Query: 19 IHGNDNAYKCHQ--CQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC-- 74
IHG + CH C R + + F Q L+ H +P+KC
Sbjct: 28 IHGERKEFVCHWGGCSREL---------------RPFKAQYMLVVHMRRHTGEKPHKCTF 72
Query: 75 DTCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCDKSFVNQINPTSTHTPTYTKSNLAQHS 132
+ C KS++ +NL TH H+G +P+ C C K+F N S+ A+H
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA-------------SDRAKHQ 119
Query: 133 CMNSHFPKPYQCD--RCSQFFGDRMNLISH 160
KPY C C++ + D +L H
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P++CDTC+KSF LN+H++IH+G +P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 51 KVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKC--TTCD 106
K F + L++H +P+ C C K F S+NL H+ H+G +PFKC CD
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 107 KSFVN 111
+ F N
Sbjct: 130 RRFAN 134
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHS 95
C K+F + +L H +P+KC+ C++ F NS + H +H+
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT-- 104
C +++ L +H C +P+ C + CEK FT+ +L H L H+G + F C +
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 105 CDKSFVNQIN 114
CD F + N
Sbjct: 80 CDLRFTTKAN 89
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
E C K F + + L H + PY+C + C+K F+ L H+ +H+G K +
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 169
Query: 105 CDKSFVNQ 112
C SFV +
Sbjct: 170 C--SFVGK 175
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
C C + + +SL H + Y C CEK F ++ H++ H+G R ++C C
Sbjct: 25 CIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLAC 84
Query: 106 DKSFVN 111
KSF+N
Sbjct: 85 GKSFIN 90
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH 90
C YC KVF H R Y+C C KSF N Q +++H
Sbjct: 53 CRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
Y C C++S+ +L H IHS + + C C+K F
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVN 111
+P++C C ++F+ S +L TH H+G +PF C C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI 93
+C C + F + L +H +P+ CD C + F S H+ I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K+F NL THQ+IH+G +P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F NL +HQ
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ 32
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 74 CDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC 133
C+ C K F + +LN H+L HSG +P+ C C F + + S H ++ S
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRK-DRMSYHVRSHDGS------- 61
Query: 134 MNSHFPKPYQCDRCSQFF 151
KPY C C + F
Sbjct: 62 ----VGKPYICQSCGKGF 75
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 38 SANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG- 96
S ++GV CE C K+F L H +PY C C F ++ H H G
Sbjct: 3 SGSSGV-ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 97 -IRPFKCTTCDKSF 109
+P+ C +C K F
Sbjct: 62 VGKPYICQSCGKGF 75
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH-QLIHSG 96
+PY C +C K F+ +LN H + +HSG
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKCD C KSF +L HQ IH+G +P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C K+FT+ NL THQ IH+G +P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F DR NL +HQ
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQ 32
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
K P+KC+ C K+F++S +L+ HQLIH+G P
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L HQ IH+G++P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+CD C K+F++ +L HQ +HSG +P
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQ 112
RP+ C+ C K++ ++ L+ H+ H G RP C C K F +Q
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
C +C K + S L H + RP C C K F + +N H +H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT-- 104
C +++ L +H +P+ C + CEK FT+ +L H L H+G + F C +
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 105 CDKSFVNQIN 114
CD F + N
Sbjct: 71 CDLRFTTKAN 80
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
YKCD C K F+ S +L THQ +H+G +P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K + + NL+ HQ +H+G RP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C++C + + + NL HQ
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQ 32
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
RPY C C K+FT+ NL HQ IH+G +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+PY C C + F DR NLI HQ
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ 32
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C KSFT L+ HQ IH+G +P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C K+F NL HQ IH+G +P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + NL HQ
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
K +PYKC C K+F NL THQ+IH+G
Sbjct: 9 KEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 27.3 bits (59), Expect = 6.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F R NL +HQ
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQ 32
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C K+F+ +L THQ+IH+G +P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C+ C K+F+ +L THQ IH+G +P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQC 162
KPY+C++C + F R +L +HQ
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQA 33
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K+F+ + L HQ IH+G +P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 46 CEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSG 96
CE C + F +Q L H +PY C C ++FT L H Q IHSG
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQ 112
+ C+ C ++F ++L H H+ +P+ C C+++F +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P++C C KSF+ S L THQ IH+G +P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
RP+KC+ C KSF S +L HQ IH+G +P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KC+ C K FT + L++HQ +H+G +P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C K+F++ Q+L+ HQ IHSG +P
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC C K F + +L HQLIH+G +P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KCD C KSF LN H ++H+ +P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+KC+ C+K+FT S +L HQ IH+G +P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P++C+ C K FT + +L++HQ +H+G +P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C+ C K+F+ + L HQ +H+G +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L H+ IH+G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L H+ IH+G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L H IH+G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L H+ +H+G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C K+FT +L HQ H+G +P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C CS+ F + +L HQ
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQ 32
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C K+F + L HQ IH+G +P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C KSF +LN H+ IH+G +P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.031, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC C K+F +LN H+ IH+G RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.032, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K F ++L TH ++H+G +P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K F ++ L+ HQ IH+G +P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K FT + +L H+ IH+G +P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C KSF L+ HQ IH+G P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
+PYKC C K+FT L+ HQ H+G R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.043, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY CD C K+F S L HQ IH+G +P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY CD C + FG L+ HQ
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.049, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C K+FT L H+ +H+G++P
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
P+ C C K FT+ NL HQ IH+G RP
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+TC F +L H LIH+G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
+PYKC C KSFT L HQ H+G R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C K+F+ + +L HQ +H+G +P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +LI HQ
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ 32
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
PYKC CEKSF+ L HQ +H+ +P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC C K+F ++ + HQ +H+G RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P++C C+K+F NL HQ H+G +P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F + NLI HQ
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ 32
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+P++C C KSF NL THQ IH+G
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F + NL++HQ
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQ 32
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC C K+F S +L H +HSG RP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.10, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PYKC+ C K+F +L HQ HSG +P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C C K+F+ L HQ H+G++P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQCGPEDIKPN 170
KPY C +C++ F + LI HQ +KP+
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY+C+ C+K+F NL HQ H+G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F + NL+ HQ
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ 32
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSG 96
P KC C K FT S NL H IHSG
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSG 27
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KC C KS+ +L HQ +H+G +P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
+PY+C C K+F +LN H+ +H+G R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C K+F+ L+ HQ H+G +P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
YKC+ C K F+ + L+ HQ IH+G +P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 73 KCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
+C C K F ++ LN H H+G +P+KC C+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCE 39
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH 90
+C YC K F L H +PYKC+ CE + +L H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+ C C K+F++ LN H+ IH+G +P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKC 102
+PY C +C K F+ +LN H + +H+ RP KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.20, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PYKC+ C K + NL+ HQ +H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + + R+NL HQ
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQ 32
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
R Y+C C K+F L+ HQ IH G +P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+P++C TC++ F+ S +L TH H+G
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P C+ C K+F S L+ HQ IHSG +P
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.26, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
+PY C C K+FT L HQ IH+G+
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
++C C K+FT L+ HQ IH+G +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+CD C K+F+ +L H +H+G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 140 KPYQCDRCSQFFGDRMNLISH 160
KPY+CD+C + F + +LI H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 32.0 bits (71), Expect = 0.30, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C KSF+ +L H+ +H+G P
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
PY+C C K+F+ L +HQ H+G +P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 PYQCDRCSQFFGDRMNLISHQ 161
PY+C C + F + LISHQ
Sbjct: 12 PYECHECGKAFSRKYQLISHQ 32
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY+C C KSF+ S L H + H+ +P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KC C K+F + +L +H IH+G +P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C C K+FT NL HQ IH+ +P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C C + F R NLI HQ
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ 32
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KC C K F+ LN H +H+G +P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
E C K F + + L H + PY+C + C+K F+ L H+ +H+G K +
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 105 CDKSFVNQ 112
C SFV +
Sbjct: 67 C--SFVGK 72
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
RPY C C K F+ + TH +H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
E C K F + + L H + PY+C + C+K F+ L H+ +H+G K +
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 105 CDKSFVNQ 112
C SFV +
Sbjct: 67 C--SFVGK 72
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+KC+ C K F + +HQ HSG +P
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.53, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C+ C K F++ L HQ IH+G
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFG 152
H+G +P+ C+ CDK+F Q H Y N P + C +C + F
Sbjct: 9 THTGEKPYACSHCDKTF-RQKQLLDMHFKRYHDPNFV---------PAAFVCSKCGKTFT 58
Query: 153 DRMNLISHQ---CGPEDIK 168
R + H GP+ ++
Sbjct: 59 RRNTMARHADNCAGPDGVE 77
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 44 HKCEYCHKVFDQQSSLLSH----NCPQMKPRPYKCDTCEKSFTNSQNLNTH 90
+ C +C K F Q+ L H + P P + C C K+FT + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.65, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C C KSF + L HQ +HSG +P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 0.68, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C K+FT S L+ H+ +H+G
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+ ++C C + FT +LN HQ IH+G +P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P++C C KSF+ + L HQ IH+G P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 0.70, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+ +PY+C C K+F + L HQ HSG
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.79, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
R Y+C C K+F L HQ IH+G +P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+PY C+ C K+F S +LN H +H+
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.87, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PYKC C K + +L+ HQ +H+G
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTG 37
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
Y C+ C L H H+ +RP+ CT C+ SF + N T
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLT 46
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C+ C F + Q L +H IH+G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
RPY+C C K+F +L H+ H+G +P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
R Y+C C KSF +L H+ IH+G P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 30.0 bits (66), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 74 CDTCEKSFTNSQNLNTHQLIHSGIRPF 100
C+ C K F + +LN H+L HSG +P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C K+F + TH+ IH+G
Sbjct: 9 KPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C C K+F++ L H HSG +P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
K + +KC+ CEK+F+ S+ L H+ IH+
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSG 96
PY+C C K+F L +HQ H+G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG 35
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 141 PYQCDRCSQFFGDRMNLISHQ 161
PY+C C + F + LISHQ
Sbjct: 10 PYECSECGKAFNRKDQLISHQ 30
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 135 NSHFPKPYQCDRCSQFFGDRMNLISHQ 161
S KPY+C C + FG + LI HQ
Sbjct: 4 GSSGEKPYECTDCGKAFGLKSQLIIHQ 30
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY+C C K+F L HQ H+G
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 2.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+PY C C K+F + L H H+G +P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 36 FLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMK--PRPYKCDTCEKSFTNSQNLNTH-QL 92
F ++C+ C +V+ S+ H K + Y C C K FT N+ H ++
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 93 IH 94
IH
Sbjct: 63 IH 64
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+ +KC C+ F+ + +L HQ +H G +P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH 90
+ Y+C CEK F +S NL TH
Sbjct: 1 KTYQCQYCEKRFADSSNLKTH 21
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 3.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
+PY+C+ C K+F L H+ H+G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
R ++C C K F + N H+ IH+G +P
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 3.9, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C+ C K+F L H+ IH+G
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein From
The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 136 SHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKP 169
S + YQC RC F + LI H E + P
Sbjct: 5 SSMERVYQCLRCGLTFRTKKQLIRHLVNTEKVNP 38
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSG 96
PY+C C K F+ L +HQ HSG
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+P+ C CEK+F++ L HQ H+ +P
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|1Z6M|A Chain A, Structure Of Conserved Protein Of Unknown Function From
Enterococcus Faecalis V583
Length = 175
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMK-PRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+C YC K F++ LL+ + K R K EK N+ H + +S +
Sbjct: 38 RCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVXHHYIDYSAPEQ-ALS 96
Query: 104 TCDKSFVNQ---INPTSTHTPTYTKSNLA 129
K F Q N T TY + NL
Sbjct: 97 ALHKXFATQDEWGNLTLEEVATYAEKNLG 125
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
RP+KC+ C K F +L H +HS
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 135 NSHFPKPYQCDRCSQFFGDRMNLISHQ 161
S KPY C C + F D L+ HQ
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+PY C C+++F+++ L HQ +H+
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 6.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
Y C C KSF+ + L H+ +HSG +P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 77 CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSF 109
C K++ S +L H H+G +PF C+ C++ F
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
>pdb|2ELV|A Chain A, Solution Structure Of The 6th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 8.3, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
Y C CE+ F N + + H L+H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 26.9 bits (58), Expect = 8.6, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
YKC CE+SF L+ HQ +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 95 SGIRPFKCTTCDKSF 109
+GI+PF+C CD+SF
Sbjct: 7 TGIKPFQCPDCDRSF 21
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 26.9 bits (58), Expect = 9.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 69 PRPYKCDTCEKSFTNSQNLNTHQLIH 94
PR Y C C++ F ++Q L H +H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQ 91
PY C C KSFT +L HQ
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQ 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,600,668
Number of Sequences: 62578
Number of extensions: 209003
Number of successful extensions: 1047
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 555
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)