RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14244
(226 letters)
>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175).
Length = 820
Score = 67.2 bits (165), Expect = 6e-13
Identities = 22/45 (48%), Positives = 25/45 (55%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
D Q + Q+ +QQ QQ Q Q Q Q QQ QQ Q QQQ QQ Q
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQG 654
Score = 66.5 bits (163), Expect = 8e-13
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q N ++ + + QQ Q Q Q Q QQ QQ Q QQQ QQ Q Q Q S
Sbjct: 610 DLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGS 661
Score = 63.8 bits (156), Expect = 8e-12
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q+Q Q+ +QQ QQ Q Q Q Q QQ QQ Q Q
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQ 646
Score = 62.2 bits (152), Expect = 2e-11
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + Q Q QQ QQ Q QQQ QQ Q Q Q ++QQ
Sbjct: 622 QQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQ 667
Score = 61.1 bits (149), Expect = 6e-11
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q QQ QQ Q QQQ QQ Q Q Q ++QQ
Sbjct: 624 GQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQAL 669
Score = 60.7 bits (148), Expect = 9e-11
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQ QQ Q QQQ QQ Q Q Q ++QQ +
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Score = 60.7 bits (148), Expect = 9e-11
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQ Q QQQ QQ Q Q Q ++QQ +
Sbjct: 635 QPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRD 671
Score = 59.5 bits (145), Expect = 2e-10
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQ Q QQQ QQ Q Q Q ++QQ + +
Sbjct: 637 GQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDE 672
Score = 58.8 bits (143), Expect = 4e-10
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q Q + QQ Q QQQ QQ Q Q Q ++QQ + + +Q
Sbjct: 623 QGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQ 676
Score = 58.0 bits (141), Expect = 7e-10
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 189 MQQQQQ-------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+++QQ Q+Q Q+ +QQ QQ Q Q Q Q QQ
Sbjct: 597 LREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQG 640
Score = 56.4 bits (137), Expect = 3e-09
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ QQ Q Q Q ++QQ + + +Q+
Sbjct: 642 QGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRG 678
Score = 53.8 bits (130), Expect = 2e-08
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q QQQ QQ Q Q Q ++QQ + + +Q+
Sbjct: 644 QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGG 679
Score = 52.6 bits (127), Expect = 4e-08
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 23/60 (38%)
Query: 189 MQQQQQQQQQQQQQQQ-----------------------QQQQQQQQQQQQQQQQQQQQQ 225
+Q Q Q Q + QQ Q+Q Q+ +QQ QQ Q Q
Sbjct: 573 LQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQGQQGQGGQG 632
Score = 51.4 bits (124), Expect = 1e-07
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 23/74 (31%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQ----------------------QQQQQQQQQQQQQ 211
LQ Q+ N + + Q + QQ Q+Q Q+ +QQ
Sbjct: 566 LQ-QMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFNAQRGEQQG 624
Query: 212 QQQQQQQQQQQQQQ 225
QQ Q Q Q Q Q
Sbjct: 625 QQGQGGQGQGQPGQ 638
Score = 51.1 bits (123), Expect = 1e-07
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQ QQ Q Q Q ++QQ + + +Q+
Sbjct: 646 QQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLP 681
Score = 49.9 bits (120), Expect = 3e-07
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQ Q Q Q ++QQ + + +Q+
Sbjct: 647 QQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPG 682
Score = 48.4 bits (116), Expect = 1e-06
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q QQ Q Q Q ++QQ + + +Q+
Sbjct: 648 QGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGM 683
Score = 45.7 bits (109), Expect = 1e-05
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q Q Q ++QQ + + +Q+
Sbjct: 650 QQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684
Score = 45.3 bits (108), Expect = 1e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D Q + ++ ++ + + QQQ QQQ Q QQQ +Q
Sbjct: 719 DRQGR-ALEALREGARALGEAMAQQQGQQQGGQGQQQGRQGGNG 761
Score = 44.5 bits (106), Expect = 2e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ + QQQ QQQ Q QQQ +Q +
Sbjct: 732 ARALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 43.7 bits (104), Expect = 4e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
M+Q +Q Q+ QQ Q Q + QQ Q+
Sbjct: 509 MRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542
Score = 43.7 bits (104), Expect = 4e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+++ + + QQQ QQQ Q QQQ +Q +
Sbjct: 728 LREGARALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 43.7 bits (104), Expect = 4e-05
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q G +P Q Q +Q Q Q Q ++QQ + + +Q+
Sbjct: 628 QGGQGQGQPGQQGQQGQGQQQGQQ-----GQGGQGGQGSLAERQQALRDELGRQRGGLPG 682
Query: 221 QQQQQ 225
+
Sbjct: 683 MGGEA 687
Score = 42.6 bits (101), Expect = 1e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+ + QQQ QQQ Q QQQ +Q +
Sbjct: 734 ALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 20/63 (31%)
Query: 183 EQAKIKMQQQQQ---QQQQQQQQQQQQQQQQQQ--------QQQQQ---------QQQQQ 222
+A+ ++Q QQ Q Q Q Q + QQ ++QQ Q+Q
Sbjct: 557 AEAQQLLEQLQQMMENLQVTQGGQGGQSEMQQAMEGLGETLREQQGLSDETFRDLQEQFN 616
Query: 223 QQQ 225
Q+
Sbjct: 617 AQR 619
Score = 41.4 bits (98), Expect = 2e-04
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +Q +Q Q+ QQ Q Q + QQ Q
Sbjct: 505 LDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQ 541
Score = 41.0 bits (97), Expect = 3e-04
Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 39/77 (50%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQ-------------------------------------- 210
+Q Q+ QQ Q Q +
Sbjct: 513 AEQAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQMMEN 572
Query: 211 -QQQQQQQQQQQQQQQS 226
Q Q Q Q + QQ+
Sbjct: 573 LQVTQGGQGGQSEMQQA 589
Score = 41.0 bits (97), Expect = 3e-04
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+A +Q +Q Q+ QQ Q Q + QQ Q+
Sbjct: 503 EALDDYMRQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542
Score = 40.7 bits (96), Expect = 4e-04
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
DE+ MQ+ ++ +Q +Q Q+ QQ Q Q +
Sbjct: 491 DEEIAKLMQELREALDDYMRQLAEQAQRNPQQGDQPPDQGNSME 534
Score = 40.7 bits (96), Expect = 4e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q +Q Q+ QQ Q Q + QQ Q+
Sbjct: 510 RQLAEQAQRNPQQGDQPPDQGNSMELTQQDLQR 542
Score = 38.0 bits (89), Expect = 0.003
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
+A + QQQ QQQ Q QQQ +Q +
Sbjct: 733 RALGEAMAQQQGQQQGGQGQQQGRQGGNGR 762
Score = 37.2 bits (87), Expect = 0.006
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + QQQ QQQ Q QQQ +Q
Sbjct: 733 RALGEAMAQQQGQQQGGQGQQQGRQG 758
Score = 36.8 bits (86), Expect = 0.007
Identities = 11/78 (14%), Positives = 15/78 (19%), Gaps = 40/78 (51%)
Query: 188 KMQQQQQQQQQQQQQQQQQ----------------------------------------Q 207
+ Q+ QQ Q Q Q
Sbjct: 515 QAQRNPQQGDQPPDQGNSMELTQQDLQRMMDRIEELMESGRRAEAQQLLEQLQQMMENLQ 574
Query: 208 QQQQQQQQQQQQQQQQQQ 225
Q Q Q + QQ +
Sbjct: 575 VTQGGQGGQSEMQQAMEG 592
Score = 35.6 bits (83), Expect = 0.016
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q + + ++ + + QQQ QQQ Q QQQ
Sbjct: 719 DRQGRALEALREGARALGEAMAQQQGQQQGGQGQQQG 755
Score = 35.6 bits (83), Expect = 0.017
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q Q Q Q ++QQ + + +Q+ + +
Sbjct: 644 QGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEA 690
Score = 34.5 bits (80), Expect = 0.044
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q ++QQ + + +Q+ + + + +
Sbjct: 658 GQGSLAERQQALRDELGRQRGGLPGMGGEAGEAARDA 694
Score = 34.1 bits (79), Expect = 0.055
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N +I Q+ ++ +Q +Q Q+ QQ Q Q
Sbjct: 487 NGASDEEIAKLMQELREALDDYMRQLAEQAQRNPQQGDQPPDQGNS 532
Score = 33.7 bits (78), Expect = 0.069
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ ++ +Q +Q Q+ QQ Q Q S
Sbjct: 499 QELREALDDYMRQLAEQAQRNPQQGDQPPDQGNS 532
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 52.1 bits (125), Expect = 6e-08
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q S + + K ++QQQ ++ QQ+Q +Q++ +Q ++++ Q+Q++Q
Sbjct: 69 QQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Score = 49.4 bits (118), Expect = 5e-07
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q K +Q++ +Q ++++ Q+Q++Q ++ +Q +Q+Q
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 49.0 bits (117), Expect = 5e-07
Identities = 9/41 (21%), Positives = 26/41 (63%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q + Q++ +Q ++++ Q+Q++Q ++ +Q +Q+Q
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 49.0 bits (117), Expect = 6e-07
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ ++K ++++ Q+Q++Q ++ +Q +Q+Q ++ +
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141
Score = 48.3 bits (115), Expect = 1e-06
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+QA+ Q+Q +Q++ +Q ++++ Q+Q++Q ++ +Q
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Score = 48.3 bits (115), Expect = 1e-06
Identities = 9/45 (20%), Positives = 29/45 (64%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+E + + +Q++ +Q ++++ Q+Q++Q ++ +Q +Q+Q+
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134
Score = 46.7 bits (111), Expect = 4e-06
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + + + +++QQQ ++ QQ+Q +Q++ +Q ++++ Q+Q++
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK 118
Score = 46.0 bits (109), Expect = 6e-06
Identities = 14/53 (26%), Positives = 36/53 (67%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N Q Q + ++A+ + ++++QQQ ++ QQ+Q +Q++ +Q ++++ Q+Q+
Sbjct: 65 NRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK 117
Score = 43.3 bits (102), Expect = 5e-05
Identities = 8/51 (15%), Positives = 26/51 (50%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + + +++ ++ Q+Q++Q ++ +Q +Q+Q ++ +
Sbjct: 94 QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 42.1 bits (99), Expect = 1e-04
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q +QQQQQ+ ++ ++Q+++++QQQ ++ QQ+Q
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQA 97
Score = 34.4 bits (79), Expect = 0.036
Identities = 10/28 (35%), Positives = 23/28 (82%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q +QQQQQ+ ++ ++Q+++++QQQ+
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQA 89
Score = 32.1 bits (73), Expect = 0.23
Identities = 5/43 (11%), Positives = 20/43 (46%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + K ++ +Q +Q+Q ++ + + + + + ++
Sbjct: 113 AQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 30.2 bits (68), Expect = 0.99
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ K + +Q +Q+Q ++ + + + + + ++
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAA 157
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 48.4 bits (115), Expect = 8e-07
Identities = 13/45 (28%), Positives = 33/45 (73%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
EQ ++K ++++ + Q+QQ+Q ++ ++Q Q +Q+QQ++Q ++ +
Sbjct: 98 AEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA 142
Score = 42.6 bits (100), Expect = 8e-05
Identities = 14/61 (22%), Positives = 38/61 (62%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E++KP Q ++ +++ +QQ+Q ++ ++Q Q +Q+QQ++Q ++ +Q+++
Sbjct: 90 EELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKA 149
Query: 225 Q 225
+
Sbjct: 150 E 150
Score = 41.9 bits (98), Expect = 1e-04
Identities = 11/43 (25%), Positives = 29/43 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ + K ++Q ++ + +Q +Q++ +Q ++++ + Q+QQ+Q
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQA 120
Score = 41.9 bits (98), Expect = 2e-04
Identities = 12/51 (23%), Positives = 32/51 (62%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ ++Q K K +Q ++ + +Q +Q++ +Q ++++ + Q+QQ+Q +
Sbjct: 71 QSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAE 121
Score = 39.9 bits (93), Expect = 6e-04
Identities = 12/51 (23%), Positives = 33/51 (64%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q +EQ +++ +Q +Q++ +Q ++++ + Q+QQ+Q ++ ++Q Q
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQ 128
Score = 39.2 bits (91), Expect = 0.001
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q S + + K +++Q ++ + +Q +Q++ +Q ++++ + Q+QQ+Q
Sbjct: 69 SQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQ 119
Score = 38.8 bits (90), Expect = 0.002
Identities = 10/49 (20%), Positives = 31/49 (63%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I + AK QQ++++++Q ++ + +Q +Q++ +Q ++++ + Q
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQ 114
Score = 36.1 bits (83), Expect = 0.009
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ + Q QQ ++ +QQ++++++Q ++ + +Q +
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAA 98
Score = 35.3 bits (81), Expect = 0.017
Identities = 9/44 (20%), Positives = 26/44 (59%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D A ++ + Q QQ ++ +QQ++++++Q ++ + +Q +
Sbjct: 56 DPGAVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAE 99
Score = 35.3 bits (81), Expect = 0.017
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q QQ ++ +QQ++++++Q ++ + +Q +Q
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQ 100
Score = 34.2 bits (78), Expect = 0.041
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
EQ K + ++Q Q +Q+QQ++Q ++ +Q+++ + + +
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKA 156
Score = 31.8 bits (72), Expect = 0.28
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q +E K +Q+QQ++Q ++ +Q+++ + + + + +
Sbjct: 114 QEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Score = 31.1 bits (70), Expect = 0.41
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+QA+ +Q Q +Q+QQ++Q ++ +Q+++ + + + +
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA 160
Score = 30.3 bits (68), Expect = 0.86
Identities = 7/52 (13%), Positives = 29/52 (55%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + ++ + ++Q Q +Q+QQ++Q ++ +Q+++ + + + ++
Sbjct: 109 ERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEA 160
Score = 29.9 bits (67), Expect = 1.0
Identities = 7/38 (18%), Positives = 22/38 (57%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K Q +Q+QQ++Q ++ +Q+++ + + + + +
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 175 QTQISNNDE-QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + ND ++ Q+ Q+ Q+Q+ + +QQ + Q +QQ +Q
Sbjct: 63 QNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQ 114
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D L Q++ + + Q+Q+ + +QQ + Q +QQ +Q + QQ
Sbjct: 70 DALANQLTALQKAQE---SQKQELEGILKQQAKALDQANRQQAALAKQLDELQQ 120
Score = 37.8 bits (88), Expect = 0.003
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 190 QQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQS 226
+QQ Q Q Q Q+ Q+ Q+Q+ + +QQ
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAK 99
Score = 37.0 bits (86), Expect = 0.005
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 190 QQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQQS 226
QQ Q Q Q Q+ Q+ Q+Q+ + +QQ ++
Sbjct: 60 QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKA 100
Score = 36.2 bits (84), Expect = 0.009
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K Q Q Q Q Q+ Q+ Q+Q+ + +Q
Sbjct: 59 KQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQ 96
Score = 35.8 bits (83), Expect = 0.012
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q+ Q+ Q+Q+ + +QQ + Q
Sbjct: 70 DALANQLTALQKAQESQKQELEGILKQQAKALDQANR 106
Score = 35.8 bits (83), Expect = 0.012
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 185 AKIKMQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQQQQQ 225
K + Q Q Q Q+ Q+ Q+Q+ + +QQ +
Sbjct: 58 GKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALD 102
Score = 31.6 bits (72), Expect = 0.30
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
LQ + ++ + ++QQ + Q +QQ +Q + QQ+
Sbjct: 79 LQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQK 121
>gnl|CDD|220388 pfam09766, FimP, Fms-interacting protein. This entry carries part
of the crucial 144 N-terminal residues of the FmiP
protein, which is essential for the binding of the
protein to the cytoplasmic domain of activated
Fms-molecules in M-CSF induced haematopoietic
differentiation of macrophages. The C-terminus contains
a putative nuclear localisation sequence and a leucine
zipper which suggest further, as yet unknown, nuclear
functions. The level of FMIP expression might form a
threshold that determines whether cells differentiate
into macrophages or into granulocytes.
Length = 352
Score = 43.9 bits (104), Expect = 2e-05
Identities = 13/55 (23%), Positives = 32/55 (58%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
NL +I ++E+AK QQ++ +Q Q ++++Q++Q++++ Q++
Sbjct: 189 KNLTVEIIGDEEEAKAFEQQKESSEQSQDDDSDSDEEEEQKRQKKRRSTDQEKLD 243
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 41.8 bits (99), Expect = 3e-05
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
K+++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q
Sbjct: 10 KLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41
Score = 41.0 bits (97), Expect = 5e-05
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+E +I+ ++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q
Sbjct: 1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41
Score = 39.5 bits (93), Expect = 2e-04
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41
Score = 39.1 bits (92), Expect = 2e-04
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q
Sbjct: 7 RRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++++ ++ Q+Q Q+QQQ Q++Q++ Q Q + Q+Q+
Sbjct: 7 RRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQA 41
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 43.7 bits (103), Expect = 3e-05
Identities = 11/50 (22%), Positives = 31/50 (62%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I + A K Q++Q++ +QQ ++ ++Q+ +Q +Q++ +Q+ ++
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEK 102
Score = 42.9 bits (101), Expect = 6e-05
Identities = 11/61 (18%), Positives = 32/61 (52%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ Q ++ E+A+ + +Q +Q++ +Q+ ++ +Q +Q +Q +++Q+
Sbjct: 60 KPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Query: 225 Q 225
Q
Sbjct: 120 Q 120
Score = 42.1 bits (99), Expect = 1e-04
Identities = 12/63 (19%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P + + +Q Q AK + ++Q++ +QQ ++ ++Q+ +Q +Q++ +Q+ +
Sbjct: 45 PGAVAQQANRIQQQKKP---AAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAE 101
Query: 224 QQS 226
+ +
Sbjct: 102 KAA 104
Score = 40.6 bits (95), Expect = 3e-04
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
VD N Q + K +++Q++Q++ +QQ ++ ++Q+ +Q +Q++ +Q+
Sbjct: 43 VDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR 97
Score = 37.1 bits (86), Expect = 0.005
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E+ + Q +Q++ +Q+ ++ +Q +Q +Q +++Q+Q
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQA 121
Score = 36.7 bits (85), Expect = 0.006
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
EQA+ K +Q+ ++ +Q +Q +Q +++Q+Q ++ + +Q
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Score = 33.3 bits (76), Expect = 0.091
Identities = 7/51 (13%), Positives = 28/51 (54%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + Q +++ + ++ +Q +Q +Q +++Q+Q ++ + +Q +
Sbjct: 82 KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
Score = 32.5 bits (74), Expect = 0.13
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QA + QQ + QQQ++ +++Q++Q++ +QQ ++
Sbjct: 39 QAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEA 80
Score = 32.5 bits (74), Expect = 0.17
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ Q + + K Q+ ++ +Q +Q +Q +++Q+Q ++ + +Q
Sbjct: 79 EAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Score = 31.0 bits (70), Expect = 0.42
Identities = 7/44 (15%), Positives = 27/44 (61%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+A + +Q +Q +++Q+Q ++ + +Q + + + + + +++
Sbjct: 100 AEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Score = 31.0 bits (70), Expect = 0.44
Identities = 6/44 (13%), Positives = 28/44 (63%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ AK ++Q+Q ++ + +Q + + + + + +++ +++ ++Q
Sbjct: 108 EQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 31.0 bits (70), Expect = 0.49
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ + QQQ++ +++Q++Q++ +QQ
Sbjct: 44 DPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAE 78
Score = 30.2 bits (68), Expect = 0.87
Identities = 8/51 (15%), Positives = 28/51 (54%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + +++A + +Q +Q +Q +++Q+Q ++ + +Q + + + +
Sbjct: 88 QARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA 138
Score = 29.0 bits (65), Expect = 2.2
Identities = 7/41 (17%), Positives = 24/41 (58%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
A+ +Q +Q +Q +++Q+Q ++ + +Q + + + + +
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 42.3 bits (100), Expect = 3e-05
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
E I M ++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 127 ELVSIGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++Q + +QQ QQQQ+ ++Q +++ +++Q
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 35.8 bits (83), Expect = 0.006
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++Q + +QQ QQQQ+ ++Q +++ +++
Sbjct: 134 NRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
Score = 35.0 bits (81), Expect = 0.012
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
I N Q + QQ QQQQ+ ++Q +++ +++Q
Sbjct: 130 SIGMNRRQMRTPRQQFQQQQEMEKQLEEEDKKEQ 163
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 42.2 bits (100), Expect = 4e-05
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++++ LQ Q + E+A+ QQ+ QQ+QQ+ QQ+QQ QQ+ QQ+QQ+ Q
Sbjct: 56 KELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQELLQP 112
Score = 39.5 bits (93), Expect = 3e-04
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+++ LQ + +QA ++ ++ +QQ+ QQ+QQ+ QQ+QQ QQ+ QQ+QQ+
Sbjct: 49 AELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQE 108
Score = 35.7 bits (83), Expect = 0.006
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQ---------QQQQQQQQQQQQQQQQQQQQ 215
+ ++ LQ ++ +++ + + Q+ Q+Q + +QQ+ QQ+QQ+ QQ+QQ
Sbjct: 38 KQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQA 97
Query: 216 QQQQQQQQQQ 225
QQ+ QQ+QQ
Sbjct: 98 AQQELQQKQQ 107
Score = 27.2 bits (61), Expect = 4.5
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A Q+Q +++ ++ Q + Q+++++ Q+++Q+ Q+Q S
Sbjct: 31 PAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLS 73
Score = 26.8 bits (60), Expect = 7.1
Identities = 8/47 (17%), Positives = 30/47 (63%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
S + A+ +++++ ++ Q + Q+++++ Q+++Q+ Q+Q ++
Sbjct: 30 SPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEA 76
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 42.7 bits (101), Expect = 5e-05
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N++ ++ Q QQQ QQQQ Q Q +Q Q
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQP 152
Score = 42.7 bits (101), Expect = 5e-05
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +Q QQQ QQQQ Q Q +Q Q Q
Sbjct: 113 QVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155
Score = 42.7 bits (101), Expect = 6e-05
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N + Q QQQ QQQQ Q Q +Q Q Q+
Sbjct: 108 NEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQT 154
Score = 41.6 bits (98), Expect = 1e-04
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQQ QQQQ Q Q +Q Q Q
Sbjct: 120 QIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155
Score = 41.6 bits (98), Expect = 1e-04
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ +++QQQ QQQQ Q Q +Q Q Q
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPA 156
Score = 41.2 bits (97), Expect = 2e-04
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQ QQQQ Q Q +Q Q Q
Sbjct: 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPA 156
Score = 39.3 bits (92), Expect = 7e-04
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I+ Q QQQQ Q Q +Q Q Q +
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVR 159
Score = 38.5 bits (90), Expect = 0.001
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++ + + + + Q Q +Q Q Q + Q
Sbjct: 116 RSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQP 162
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q Q +Q Q Q + Q +
Sbjct: 127 QQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPA 163
Score = 36.9 bits (86), Expect = 0.004
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQQ Q Q +Q Q Q +
Sbjct: 125 AQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRT 160
Score = 36.9 bits (86), Expect = 0.005
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + +Q + Q Q Q +Q Q Q + Q
Sbjct: 114 VPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQP 162
Score = 35.4 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQ------QQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N TQ+++ Q +MQ +QQ Q +Q Q + Q QQQ QQQQ +
Sbjct: 75 NSPTQLTDEQRQLLEQMQADMRQQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATT 134
Score = 33.9 bits (78), Expect = 0.041
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+Q Q +Q Q Q +Q Q Q + Q Q
Sbjct: 118 TVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQA 169
>gnl|CDD|234354 TIGR03789, pdsO, proteobacterial sortase system OmpA family
protein. A newly defined histidine kinase (TIGR03785)
and response regulator (TIGR03787) gene pair occurs
exclusively in Proteobacteria, mostly of marine origin,
nearly all of which contain a subfamily 6 sortase
(TIGR03784) and its single dedicated target protein
(TIGR03788) adjacent to to the sortase. This protein
family shows up in only in those species with the
histidine kinase/response regulator gene pair, and often
adjacent to that pair. It belongs to the OmpA protein
family (pfam00691). Its function is unknown. We assign
the gene symbol pdsO, for Proteobacterial Dedicated
Sortase system OmpA family protein.
Length = 239
Score = 42.1 bits (99), Expect = 9e-05
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 178 ISNNDEQAKIKMQQQQ-----QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++N+++Q I Q+QQ Q+QQ +Q + + QQ Q + QQ QQQ +
Sbjct: 77 VNNDEQQQHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEE 130
Score = 39.0 bits (91), Expect = 9e-04
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
N D Q I+ +Q Q+QQ +Q + + QQ Q + QQ QQQ ++
Sbjct: 78 NNDEQQQHIAQQRQQMVALTQKQQALEQLEAEYQQAQVHLETLQQDQQQLLEE 130
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 42.8 bits (101), Expect = 9e-05
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 164 PEDIKP-NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
PEDI VD + + + + Q QQ + QQQ Q QQQ QQQ +Q+
Sbjct: 756 PEDIVDMGVDYDGNFVCGSGGMRVLPVWTDDPQSLCQQSEMQQQPSQPQQQPQQQPAEQK 815
Query: 223 QQQS 226
Sbjct: 816 DSDG 819
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 42.3 bits (99), Expect = 1e-04
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + N +Q ++ QQ QQQ QQQ Q QQ Q QQ Q +Q
Sbjct: 206 QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGH 256
Score = 40.0 bits (93), Expect = 6e-04
Identities = 19/51 (37%), Positives = 20/51 (39%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q N Q QQ QQQ QQQ Q QQ Q QQ Q +Q
Sbjct: 205 QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQG 255
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
TQ A+ Q QQ QQQ QQQ Q QQ Q QQ Q +
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTE 253
Score = 37.7 bits (87), Expect = 0.003
Identities = 18/38 (47%), Positives = 18/38 (47%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K QQ Q QQ Q QQ QQQ QQQ Q QQ
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239
Score = 37.3 bits (86), Expect = 0.004
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+P V N Q + + + + Q QQQ Q QQ Q QQ Q +Q ++ ++Q
Sbjct: 206 QPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
Score = 37.3 bits (86), Expect = 0.005
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q QQ QQQ QQQ Q QQ Q QQ Q+
Sbjct: 210 QNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252
Score = 37.0 bits (85), Expect = 0.005
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q QQ QQQ QQQ Q QQ +
Sbjct: 205 QQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPT 241
Score = 36.2 bits (83), Expect = 0.009
Identities = 17/40 (42%), Positives = 17/40 (42%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K Q Q QQ Q QQ QQQ QQQ Q QQ
Sbjct: 202 KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPT 241
Score = 36.2 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 16/37 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q QQ QQQ QQQ Q Q
Sbjct: 203 PTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQ 239
Score = 35.4 bits (81), Expect = 0.016
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ QQ Q QQ Q QQ QQQ QQQ Q +
Sbjct: 201 PKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPA 237
Score = 35.0 bits (80), Expect = 0.025
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + QQ Q QQ Q QQ QQQ QQQ Q
Sbjct: 198 RHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQ 235
Score = 31.6 bits (71), Expect = 0.29
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + QQ Q QQ Q QQ QQQ QQ
Sbjct: 196 RHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQ 231
Score = 30.4 bits (68), Expect = 0.73
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + QQ Q QQ Q QQ QQQ Q
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQ 230
Score = 30.0 bits (67), Expect = 0.96
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + QQ Q QQ Q QQ QQQ
Sbjct: 195 HRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQ 230
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 42.3 bits (100), Expect = 1e-04
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q + + + + ++ + Q +QQQ ++++Q+++ +++Q QQ+
Sbjct: 645 QAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693
Score = 41.9 bits (99), Expect = 1e-04
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 13/59 (22%)
Query: 180 NNDEQAKIKMQQQQQQ-------------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N +E + + Q QQQ + + Q +QQQ ++++Q+++ +++Q QQ+
Sbjct: 635 NREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693
Score = 41.9 bits (99), Expect = 2e-04
Identities = 12/58 (20%), Positives = 35/58 (60%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + ++Q + E+A+ + +QQQ ++++Q+++ +++Q QQ+ + ++Q Q
Sbjct: 648 QQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQ 705
Score = 41.2 bits (97), Expect = 2e-04
Identities = 10/59 (16%), Positives = 28/59 (47%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + K + Q +QQQ ++++Q+++ +++Q QQ+ + ++Q
Sbjct: 646 AQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV 704
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ ++Q QQQ + ++ QQ + ++ + Q +QQQ+
Sbjct: 639 NRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQA 674
Score = 28.9 bits (65), Expect = 2.6
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQ------------QQQQQQQQQQQQQQQQQQ 225
D + + + ++ +++ ++ ++Q QQQ ++ + Q +QQQ ++++Q
Sbjct: 622 DTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQ 680
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 22/68 (32%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQ------------------QQQQQQQQQQQQQQQQQ 221
+N + + + +++ ++ ++Q QQQ Q +QQQ ++++Q+++
Sbjct: 625 DNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRN 684
Query: 222 ----QQQQ 225
Q QQ
Sbjct: 685 DEKRQAQQ 692
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 42.4 bits (99), Expect = 1e-04
Identities = 28/132 (21%), Positives = 40/132 (30%), Gaps = 4/132 (3%)
Query: 95 SGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDR 154
+G PF + S + + H P +T P+
Sbjct: 717 AGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQP 776
Query: 155 MNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+Q + + P Q Q + + QQ Q Q QQ QQ Q Q QQ
Sbjct: 777 ----QYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 832
Query: 215 QQQQQQQQQQQS 226
QQ Q Q +
Sbjct: 833 PQQPVAPQPQDT 844
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A+ + Q QQ QQ Q QQ Q QQQQQ
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQP 269
Score = 42.1 bits (99), Expect = 1e-04
Identities = 16/62 (25%), Positives = 18/62 (29%)
Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ S Q + Q QQ QQ Q QQ Q QQQQ
Sbjct: 208 QGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267
Query: 223 QQ 224
Q
Sbjct: 268 QP 269
Score = 41.3 bits (97), Expect = 2e-04
Identities = 15/36 (41%), Positives = 15/36 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQ Q QQ Q QQQQQ Q Q
Sbjct: 238 QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQ 273
Score = 41.3 bits (97), Expect = 3e-04
Identities = 15/50 (30%), Positives = 16/50 (32%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QA + Q QQ QQ Q QQ Q QQQ
Sbjct: 218 QFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQ 267
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ Q QQ Q QQ Q QQQQQ Q Q
Sbjct: 233 PPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/36 (38%), Positives = 14/36 (38%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
QQ Q QQ Q QQQQQ Q Q Q
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/36 (38%), Positives = 14/36 (38%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ Q QQ Q QQQQQ Q Q Q
Sbjct: 240 PPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275
Score = 40.5 bits (95), Expect = 4e-04
Identities = 13/52 (25%), Positives = 13/52 (25%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQ QQ Q QQ Q QQ
Sbjct: 215 QPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQ 266
Score = 38.6 bits (90), Expect = 0.002
Identities = 14/65 (21%), Positives = 17/65 (26%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q GP + P + + Q Q Q QQ QQ Q
Sbjct: 193 QQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLS 252
Query: 221 QQQQQ 225
QQ
Sbjct: 253 QQMPP 257
Score = 37.8 bits (88), Expect = 0.003
Identities = 15/54 (27%), Positives = 17/54 (31%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L Q+ + QQ Q QQQQQ Q Q Q Q Q
Sbjct: 231 PLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/53 (28%), Positives = 17/53 (32%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L Q + + QQ Q QQQQQ Q Q Q Q Q
Sbjct: 235 QLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPG 287
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + QQ Q QQ Q QQ+ Q ++Q Q QQQ
Sbjct: 290 QGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQ 331
Score = 37.1 bits (86), Expect = 0.006
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
PE Q +S + +A+++ +QQ Q Q QQ Q +Q QQ +Q
Sbjct: 140 PESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQ 199
Query: 224 QQ 225
Sbjct: 200 PP 201
Score = 37.1 bits (86), Expect = 0.006
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q QQ+ Q ++Q Q QQQ++ S
Sbjct: 299 PQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALS 336
Score = 36.3 bits (84), Expect = 0.011
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
A + QQ Q QQ Q QQ+ Q ++Q Q QQQ++
Sbjct: 293 NAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREA 334
Score = 36.3 bits (84), Expect = 0.012
Identities = 13/38 (34%), Positives = 13/38 (34%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M Q QQQQQ Q Q Q Q Q Q
Sbjct: 255 MPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQ 292
Score = 35.9 bits (83), Expect = 0.013
Identities = 15/57 (26%), Positives = 17/57 (29%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
P Q ++ Q QQQQQ Q Q Q Q Q Q Q
Sbjct: 237 PQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQN 293
Score = 35.5 bits (82), Expect = 0.017
Identities = 17/57 (29%), Positives = 23/57 (40%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
P N T + + QQ Q QQ Q QQ+ Q ++Q Q QQQ+
Sbjct: 276 PPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQR 332
Score = 34.7 bits (80), Expect = 0.034
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQ Q QQ Q QQ+ Q ++Q Q
Sbjct: 291 GQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327
Score = 34.7 bits (80), Expect = 0.038
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQ Q QQ Q QQ+ Q ++Q
Sbjct: 290 QGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQ 326
Score = 34.4 bits (79), Expect = 0.040
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q Q QQ Q Q Q QQ QQ Q
Sbjct: 211 PEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQF 248
Score = 34.4 bits (79), Expect = 0.041
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q N + Q QQ Q QQ+ Q ++Q Q QQQ++ Q+
Sbjct: 288 LPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQE 338
Score = 34.4 bits (79), Expect = 0.041
Identities = 13/37 (35%), Positives = 13/37 (35%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q QQQQQ Q Q Q Q Q Q Q
Sbjct: 260 PQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL 296
Score = 34.4 bits (79), Expect = 0.048
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ Q QQ+QQ Q Q QQ Q +Q QQ
Sbjct: 159 VEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPE 198
Score = 34.0 bits (78), Expect = 0.053
Identities = 14/58 (24%), Positives = 15/58 (25%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
P Q Q + Q Q Q QQ Q QQ Q QQ
Sbjct: 259 PPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQR 316
Score = 33.6 bits (77), Expect = 0.075
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQ Q QQ Q QQ+ Q ++Q Q S
Sbjct: 292 QNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLS 328
Score = 33.6 bits (77), Expect = 0.076
Identities = 16/57 (28%), Positives = 17/57 (29%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q +Q Q QQQQQ Q Q Q Q Q Q Q
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAP 295
Score = 33.2 bits (76), Expect = 0.10
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q Q Q +Q Q QQ Q Q
Sbjct: 191 FPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPP 234
Score = 33.2 bits (76), Expect = 0.11
Identities = 12/44 (27%), Positives = 14/44 (31%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QA Q +Q Q Q +Q Q QQ Q Q
Sbjct: 186 PRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQ 229
Score = 33.2 bits (76), Expect = 0.11
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q QQ+ Q ++Q Q Q
Sbjct: 294 APLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQ 330
Score = 32.8 bits (75), Expect = 0.13
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q +Q Q QQ Q Q Q
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLP 237
Score = 32.4 bits (74), Expect = 0.17
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ Q QQ+ Q ++Q Q QQQ++ Q++
Sbjct: 305 LPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEA 340
Score = 32.0 bits (73), Expect = 0.22
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + +++ + Q QQ+QQ Q Q QQ Q +Q
Sbjct: 150 AQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQ 193
Score = 32.0 bits (73), Expect = 0.24
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQQS 226
+ Q + Q Q Q Q ++ + Q QQ+QQ Q Q QQ
Sbjct: 127 GTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQV 179
Score = 31.7 bits (72), Expect = 0.31
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q QQ+QQ Q Q QQ Q +Q QQ
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQG 195
Score = 31.7 bits (72), Expect = 0.31
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q +Q Q QQ Q Q Q
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238
Score = 31.7 bits (72), Expect = 0.33
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q +Q Q QQ Q Q
Sbjct: 199 QPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ 235
Score = 31.7 bits (72), Expect = 0.36
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ +Q Q Q +Q Q QQ Q+
Sbjct: 189 AAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQA 226
Score = 31.3 bits (71), Expect = 0.40
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q Q QQ Q Q Q QQ Q
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQ 245
Score = 31.3 bits (71), Expect = 0.44
Identities = 10/52 (19%), Positives = 12/52 (23%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + Q Q Q Q Q Q QQ Q
Sbjct: 256 PPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPL 307
Score = 31.3 bits (71), Expect = 0.45
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q ++ QQ Q QQ+ Q ++Q Q QQQ++ Q++
Sbjct: 301 QPQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEA 340
Score = 30.9 bits (70), Expect = 0.54
Identities = 12/44 (27%), Positives = 14/44 (31%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQ +Q Q Q +Q Q QQ S
Sbjct: 181 PQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPS 224
Score = 28.6 bits (64), Expect = 3.6
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ QQ+ Q ++Q Q QQQ++ Q++ ++ +++ +
Sbjct: 302 PQLLPLVQQPQGQQRGPQFREQLVQLSQQQREALSQEEAKRAKRRHK 348
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 41.6 bits (97), Expect = 1e-04
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 184 QAKIKMQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQQQQS 226
+ K K Q+Q+ Q++Q++ Q ++Q+Q QQ Q Q Q QQQ QQ
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQP 194
Score = 40.0 bits (93), Expect = 4e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
S N +Q + Q++ ++ + Q ++Q+Q QQ Q Q Q QQQ QQ
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 39.6 bits (92), Expect = 5e-04
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++T+ N ++ + K ++ ++ + Q ++Q+Q QQ Q Q Q QQQ QQ
Sbjct: 146 MKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 36.2 bits (83), Expect = 0.008
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P +K N + + E+ + Q ++Q+Q QQ Q Q Q QQQ QQ +++
Sbjct: 143 PHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAM 202
Query: 224 QQ 225
++
Sbjct: 203 EE 204
Score = 31.2 bits (70), Expect = 0.38
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M+ + + Q+Q+ Q++Q++ ++ + Q ++Q+Q QQ QS
Sbjct: 146 MKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQS 183
Score = 29.2 bits (65), Expect = 1.5
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
K M + + + Q+Q+ Q++Q++ ++ + Q ++Q+Q QQ
Sbjct: 142 KPHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQ 180
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 41.9 bits (99), Expect = 2e-04
Identities = 8/45 (17%), Positives = 28/45 (62%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ A + + +++QQ+ + Q +Q Q++ + Q+++Q++++ +
Sbjct: 178 ELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEIT 222
Score = 39.5 bits (93), Expect = 0.001
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ A ++QQ+ + Q +Q Q++ + Q+++Q++++ Q
Sbjct: 183 EGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQ 224
Score = 39.2 bits (92), Expect = 0.001
Identities = 8/40 (20%), Positives = 25/40 (62%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++QQ+ + Q +Q Q++ + Q+++Q++++ Q+
Sbjct: 186 AAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQA 225
Score = 39.2 bits (92), Expect = 0.001
Identities = 9/60 (15%), Positives = 26/60 (43%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E Q ++ + +++QQ+ + Q +Q Q++ + Q+++Q++
Sbjct: 159 ELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKR 218
Score = 38.8 bits (91), Expect = 0.002
Identities = 8/52 (15%), Positives = 27/52 (51%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q + + +++QQ+ + Q +Q Q++ + Q+++Q++++
Sbjct: 172 AEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITD 223
Score = 33.8 bits (78), Expect = 0.072
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QA + QQQ+ + + +++QQ+ + Q +Q Q++ + S
Sbjct: 169 QALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETS 211
Score = 33.4 bits (77), Expect = 0.083
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q++ + QQQ+ + + +++QQ+ + Q +Q Q++
Sbjct: 160 LQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209
Score = 33.4 bits (77), Expect = 0.090
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ+ + + +++QQ+ + Q +Q Q++ +
Sbjct: 175 QQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQ 212
Score = 31.8 bits (73), Expect = 0.32
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
PED + + LQ ++ +Q +++ +++ Q Q + QQQ+ + + +++QQ+
Sbjct: 137 PEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQEL 196
Query: 224 QQ 225
+
Sbjct: 197 EA 198
Score = 29.5 bits (67), Expect = 1.6
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ V L+ Q+ + + QQQ+ + + +++QQ+ + Q +Q Q
Sbjct: 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQ 204
Query: 225 Q 225
+
Sbjct: 205 E 205
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 40.5 bits (95), Expect = 3e-04
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+QA ++ +++ ++ Q + +Q Q+QQ+QQQQ+++Q
Sbjct: 69 LQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 40.5 bits (95), Expect = 3e-04
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ ++ + +++ ++ Q + +Q Q+QQ+QQQQ+++Q ++
Sbjct: 68 ELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115
Score = 40.2 bits (94), Expect = 3e-04
Identities = 12/60 (20%), Positives = 30/60 (50%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+K S ++ + ++ +++ ++ Q + +Q Q+QQ+QQQQ+++Q
Sbjct: 53 KLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 39.8 bits (93), Expect = 5e-04
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q E ++ +++ ++ Q + +Q Q+QQ+QQQQ+++Q ++
Sbjct: 62 AGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRE 115
Score = 39.4 bits (92), Expect = 6e-04
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q SN++E + ++ Q + +Q Q+QQ+QQQQ+++Q ++ + + ++
Sbjct: 72 QASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDRE 122
Score = 37.8 bits (88), Expect = 0.002
Identities = 13/68 (19%), Positives = 31/68 (45%)
Query: 158 ISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
+ G + K + + + + Q K + ++ +++ ++ Q + +Q Q
Sbjct: 41 SNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQ 100
Query: 218 QQQQQQQQ 225
+QQ+QQQQ
Sbjct: 101 KQQEQQQQ 108
Score = 34.0 bits (78), Expect = 0.045
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 158 ISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
+ E K + E+ K Q + +Q Q+QQ+QQQQ+++Q ++ +
Sbjct: 61 AAGSASQELQKQA--SESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKA 118
Query: 218 QQQQ 221
+ ++
Sbjct: 119 RDRE 122
Score = 32.4 bits (74), Expect = 0.14
Identities = 7/63 (11%), Positives = 24/63 (38%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + ++ A Q+ Q+Q + ++ +++ ++ Q + +Q
Sbjct: 40 ASNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLS 99
Query: 224 QQS 226
Q+
Sbjct: 100 QKQ 102
Score = 29.8 bits (67), Expect = 1.0
Identities = 8/56 (14%), Positives = 26/56 (46%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +++++AK+K Q Q+ Q+Q + ++ +++ ++ Q
Sbjct: 37 SSEASNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQA 92
Score = 29.4 bits (66), Expect = 1.5
Identities = 5/43 (11%), Positives = 19/43 (44%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+A+ ++ Q++Q++ ++ + + + Q + Q
Sbjct: 208 EARAELAQERQEEASEEDEAEALAGAENQITALEPLAPSTPQV 250
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/57 (28%), Positives = 37/57 (64%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++++ + LQ + E A+ K +++ Q++ Q+ Q++QQ+ QQ Q++QQ++ Q+
Sbjct: 39 KELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEELQK 95
Score = 29.1 bits (66), Expect = 1.1
Identities = 9/58 (15%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++ + +++ +++ Q+ + +++++++ Q++ Q+ Q++QQ+ QQ
Sbjct: 28 KKRQAEL--EKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain. This
domain is believed to bind double-stranded DNA of 20
bases length.
Length = 105
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
++ + QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 5 RLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + QQQQ ++QQQQ++QQQQ++ Q+Q+
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 36.4 bits (85), Expect = 0.002
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
I+ + + QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+++ + + QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 1 IRRARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + + QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 36.0 bits (84), Expect = 0.003
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 35.2 bits (82), Expect = 0.005
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+A++ QQQQ ++QQQQ++QQQQ++ Q+Q
Sbjct: 3 RARLAELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
Score = 29.1 bits (66), Expect = 0.73
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQ 211
+ + + ++QQQQ++QQQQ++ Q+Q
Sbjct: 7 AELQQQQGGLEEQQQQEEQQQQEEAQKQA 35
>gnl|CDD|236362 PRK09010, PRK09010, single-stranded DNA-binding protein;
Provisional.
Length = 177
Score = 39.4 bits (92), Expect = 4e-04
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A + QQQ Q QQ Q Q Q + QQ S
Sbjct: 122 PAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPS 164
Score = 34.8 bits (80), Expect = 0.014
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q QQ Q Q Q + QQS
Sbjct: 121 APAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQS 158
Score = 30.2 bits (68), Expect = 0.51
Identities = 11/37 (29%), Positives = 11/37 (29%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQQ Q QQ Q Q QS
Sbjct: 117 QGGGAPAGGNIGGQQQGGWGQPQQPQGGNQFSGGAQS 153
Score = 27.9 bits (62), Expect = 3.1
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
MQ +Q QQQ Q QQ Q Q
Sbjct: 110 MQMLGGRQGGGAPAGGNIGGQQQGGWGQPQQPQGGNQ 146
Score = 26.7 bits (59), Expect = 8.6
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q QQQ Q QQ Q Q S
Sbjct: 116 RQGGGAPAGGNIGGQQQGGWGQPQQPQGGNQFS 148
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 40.1 bits (94), Expect = 5e-04
Identities = 9/45 (20%), Positives = 29/45 (64%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++QAK K+QQ ++ + +Q+++ ++ Q+Q ++ ++ ++ +
Sbjct: 9 ISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAK 53
Score = 37.1 bits (86), Expect = 0.004
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D+ V T + Q + + + + +Q Q +Q +++ ++ Q+Q QQ
Sbjct: 222 DVVAGVAQGGTGAAVAVLQKEAGKLEADLALLRAEMEQLQAVIKQLKEEFKKLQEQFQQ 280
Score = 36.7 bits (85), Expect = 0.006
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
L IS E+ QQ ++ + +Q+++ ++ Q+Q ++ ++ ++ +
Sbjct: 5 LTELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAK 53
Score = 33.2 bits (76), Expect = 0.086
Identities = 6/36 (16%), Positives = 24/36 (66%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++Q + + QQ ++ + +Q+++ ++ Q+Q ++ ++
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKA 49
Score = 32.8 bits (75), Expect = 0.11
Identities = 6/36 (16%), Positives = 24/36 (66%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + + QQ ++ + +Q+++ ++ Q+Q ++ ++ +
Sbjct: 15 KQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAE 50
Score = 32.4 bits (74), Expect = 0.16
Identities = 7/38 (18%), Positives = 26/38 (68%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K+ ++Q + + QQ ++ + +Q+++ ++ Q+Q ++ ++
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEK 48
Score = 32.1 bits (73), Expect = 0.20
Identities = 5/44 (11%), Positives = 23/44 (52%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ Q + +Q + +Q+++ ++ Q+Q ++ ++ ++ +
Sbjct: 10 SKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAK 53
Score = 31.3 bits (71), Expect = 0.33
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ---QQQQQS 226
V LQ + +A + + + + +Q Q +Q +++ ++ Q+Q QQ + Q QQS
Sbjct: 235 AVAVLQKEAGKL--EADLALLRAEMEQLQAVIKQLKEEFKKLQEQFQQAMKSISQAIQQS 292
Score = 31.3 bits (71), Expect = 0.37
Identities = 6/39 (15%), Positives = 24/39 (61%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + + ++Q + + QQ ++ + +Q+++ ++ Q+Q
Sbjct: 3 AELTELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQ 41
Score = 30.5 bits (69), Expect = 0.61
Identities = 6/41 (14%), Positives = 25/41 (60%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + ++Q + + QQ ++ + +Q+++ ++ Q+Q ++
Sbjct: 6 TELISKLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAI 46
Score = 30.1 bits (68), Expect = 0.91
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++Q + + QQ ++ + +Q+++ ++ Q+Q ++ +
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEK 48
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
QA IK +++ ++ Q+Q QQ + Q QQ Q
Sbjct: 261 QAVIKQLKEEFKKLQEQFQQAMKSISQAIQQSGDTLAQ 298
Score = 28.6 bits (64), Expect = 2.6
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E +++ +Q +++ ++ Q+Q QQ + Q QQ Q
Sbjct: 253 LRAEMEQLQAVIKQLKEEFKKLQEQFQQAMKSISQAIQQSGDTLAQ 298
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 40.1 bits (94), Expect = 6e-04
Identities = 11/43 (25%), Positives = 28/43 (65%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + ++ Q+ + +++Q QQ+ +QQ QQQ+ +Q + +++
Sbjct: 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERK 218
Score = 38.5 bits (90), Expect = 0.002
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
N Q I +Q +++ Q+ + +++Q QQ+ +QQ QQQ+
Sbjct: 165 NQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQK 209
Score = 37.8 bits (88), Expect = 0.003
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ + +++Q QQ+ +QQ QQQ+ +Q + +++++
Sbjct: 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKT 220
Score = 37.4 bits (87), Expect = 0.004
Identities = 11/47 (23%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQS 226
++ +++Q +++ Q+ + +++Q QQ+ +QQ QQQ+ +Q ++
Sbjct: 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215
Score = 34.3 bits (79), Expect = 0.038
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 10/48 (20%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ----------QQQQQQ 225
+++Q QQ+ +QQ QQQ+ +Q + +++ Q+ QQQ
Sbjct: 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQ 234
Score = 28.9 bits (65), Expect = 2.2
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQ---QQQQQQQQQQQQQQQQQQ---------QQ 217
+ L+ Q ++Q QQ+ +QQ QQQ+ +Q + ++++ Q+
Sbjct: 171 TIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230
Query: 218 QQQQ 221
QQQ
Sbjct: 231 DQQQ 234
Score = 27.7 bits (62), Expect = 6.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+D + ++K QQ +++ +QQQQQ+ Q ++Q++ Q S
Sbjct: 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQAS 88
Score = 27.4 bits (61), Expect = 8.2
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +Q+ + +Q +++ Q+ + +++Q QQ++
Sbjct: 166 QARQETIAELKQTREELAAQKAELEEKQSQQKT 198
>gnl|CDD|227911 COG5624, TAF61, Transcription initiation factor TFIID, subunit
TAF12 (also component of histone acetyltransferase SAGA)
[Transcription].
Length = 505
Score = 40.1 bits (93), Expect = 6e-04
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ E + + + +++ + Q QQ Q+Q QQ
Sbjct: 201 GLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQ 249
Score = 39.7 bits (92), Expect = 8e-04
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +++ + Q QQ Q+Q QQ+ ++
Sbjct: 221 VHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 39.7 bits (92), Expect = 8e-04
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ +++ + Q QQ Q+Q QQ+
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLH 253
Score = 39.7 bits (92), Expect = 8e-04
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +++ + Q QQ Q+Q QQ+
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLH 253
Score = 39.3 bits (91), Expect = 0.001
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +++ + Q QQ Q+Q QQ+
Sbjct: 220 GVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGM 255
Score = 38.9 bits (90), Expect = 0.001
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +++ + Q QQ Q+Q QQ+ ++
Sbjct: 223 DGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYE 259
Score = 38.5 bits (89), Expect = 0.002
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +++ + Q QQ Q+Q QQ+ ++ ++
Sbjct: 221 VHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEA 260
Score = 37.4 bits (86), Expect = 0.004
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++ + Q QQ Q+Q QQ+ ++ + S
Sbjct: 227 KRRLVDRYPQFQQGQKQVLSPQQRFLHGMERYEAS 261
Score = 36.2 bits (83), Expect = 0.012
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+ K + + Q QQ Q+Q QQ+ ++
Sbjct: 222 HDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 35.1 bits (80), Expect = 0.024
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+D ++K ++ + Q QQ Q+Q QQ+ ++
Sbjct: 222 HDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 33.9 bits (77), Expect = 0.063
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N +A+ +M + +++ + Q QQ Q+Q
Sbjct: 198 MNQGLRARQEMMGLGIMAGGVYGVHDGRSKRRLVDRYPQFQQGQKQV 244
Score = 33.5 bits (76), Expect = 0.079
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +++ + Q QQ Q+Q S
Sbjct: 215 AGGVYGVHDGRSKRRLVDRYPQFQQGQKQVLS 246
Score = 32.4 bits (73), Expect = 0.20
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ + + ++ + Q QQ Q+Q QQ+ ++
Sbjct: 219 YGVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
Score = 28.5 bits (63), Expect = 3.6
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ 212
+ + + Q QQ Q+Q QQ+ ++
Sbjct: 220 GVHDGRSKRRLVDRYPQFQQGQKQVLSPQQRFLHGMER 257
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 35.8 bits (83), Expect = 7e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 86 NLNTHQLIHSGIRPFKCTTCDKSFVN 111
NL H H+G +P+KC C KSF +
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 67 MKPRPYKCDTCEKSFTN 83
+PYKC C KSF++
Sbjct: 10 TGEKPYKCPVCGKSFSS 26
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
E +K + LQ + + D+Q + +Q + Q+ ++ +Q + ++QQ Q Q Q++
Sbjct: 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRR 138
Score = 35.8 bits (83), Expect = 0.014
Identities = 9/55 (16%), Positives = 22/55 (40%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ QI + ++ ++ +Q + ++QQ Q Q Q++ S
Sbjct: 97 QSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLTGPSGGGS 151
Score = 35.4 bits (82), Expect = 0.020
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQS 226
L IS N+ + Q+++Q QQ QQ Q+ ++ +Q + ++QQ Q
Sbjct: 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132
Score = 33.1 bits (76), Expect = 0.12
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 163 GPEDIKPN-------VDNLQTQI----SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQ 211
PE++K D L+T + AK+ + + + + ++ Q+++Q QQ
Sbjct: 43 SPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQ 102
Query: 212 QQQ------QQQQQQQQQQQS 226
QQ Q+ ++ +Q +S
Sbjct: 103 IQQAVQSETQELTKEIEQLKS 123
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 39.0 bits (92), Expect = 0.001
Identities = 12/61 (19%), Positives = 31/61 (50%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E P+ L ++ ++ M+++ +Q++Q+ Q ++ + Q ++ QQQQ+
Sbjct: 256 ELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLD 315
Query: 225 Q 225
+
Sbjct: 316 R 316
Score = 36.7 bits (86), Expect = 0.006
Identities = 10/55 (18%), Positives = 32/55 (58%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q ++ ++ + ++++ + +Q+ ++ Q+ QQQ Q++ ++ QQ+ +Q
Sbjct: 307 LAQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQ 361
Score = 35.2 bits (82), Expect = 0.022
Identities = 11/52 (21%), Positives = 32/52 (61%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
++ L ++ + Q +I+ QQ+ +Q +Q+ ++ ++Q ++++Q+ + QQ
Sbjct: 336 LERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQQ 387
Score = 32.9 bits (76), Expect = 0.13
Identities = 9/51 (17%), Positives = 30/51 (58%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++S +Q + + ++ QQ+ +Q +Q+ ++ ++Q ++++Q+ + Q
Sbjct: 336 LERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQ 386
Score = 31.7 bits (73), Expect = 0.31
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+D L ++ + + QQQQ+ + QQ+ Q+ +++ + +Q+ ++ Q+
Sbjct: 291 LDQLARRLKFQSPERLL--AQQQQRLDRLQQRLQRALERRLRLAKQRLERLSQR 342
Score = 30.9 bits (71), Expect = 0.48
Identities = 7/59 (11%), Positives = 35/59 (59%)
Query: 167 IKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + + ++ ++ + + Q++ ++ QQ+ +Q +Q+ ++ ++Q ++++Q+ +
Sbjct: 325 LERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEA 383
Score = 30.2 bits (69), Expect = 0.81
Identities = 11/63 (17%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 174 LQTQISNNDEQAKIKMQQ----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
LQ + AK ++++ Q++ ++ QQ+ +Q +Q+ ++ ++Q ++++Q+
Sbjct: 321 LQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQR 380
Query: 224 QQS 226
++
Sbjct: 381 LEA 383
Score = 30.2 bits (69), Expect = 0.95
Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 174 LQTQISNNDEQ-----AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ ++ ++ ++K Q ++ QQQQ+ + QQ+ Q+ +++ + +Q+
Sbjct: 280 MRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQRALERRLRLAKQRLE 337
Score = 30.2 bits (69), Expect = 0.96
Identities = 7/38 (18%), Positives = 26/38 (68%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q++ ++ QQ+ +Q +Q+ ++ ++Q ++++Q+ + +
Sbjct: 348 PQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALA 385
Score = 29.8 bits (68), Expect = 1.1
Identities = 6/37 (16%), Positives = 24/37 (64%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ ++ QQ+ +Q +Q+ ++ ++Q ++++Q+ +
Sbjct: 350 RRIERAQQRLEQLEQRLRRAMRRQLKRKRQRLEALAQ 386
Score = 29.4 bits (67), Expect = 1.4
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + Q+ QQ QQ+ + +++ +Q++Q+ Q +
Sbjct: 262 RAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARR 297
Score = 27.9 bits (63), Expect = 5.4
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ QQ QQ+ + +++ +Q++Q+ Q ++ + QS
Sbjct: 265 LLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQS 302
>gnl|CDD|221416 pfam12090, Spt20, Spt20 family. This presumed domain is found in
the Spt20 proteins from both human and yeast. The Spt20
protein is part of the SAGA complex which is a large
cmplex mediating histone deacetylation. Yeast Spt20 has
been shown to play a role in structural integrity of the
SAGA complex as as no intact SAGA could be purified in
spt20 deletion strains.
Length = 191
Score = 37.8 bits (88), Expect = 0.002
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ QQQ Q Q Q+QQ ++ Q QQ Q+Q+
Sbjct: 87 PQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPVK 123
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQQ Q Q Q+QQ ++ Q QQ Q+Q+
Sbjct: 85 TVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKP 121
Score = 37.0 bits (86), Expect = 0.003
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ QQQ Q Q Q+QQ ++ Q QQ Q+Q+ +
Sbjct: 88 QQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPVKK 124
Score = 34.3 bits (79), Expect = 0.028
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
+ +Q++ + Q Q Q+QQ ++ Q QQ Q+Q+
Sbjct: 82 YRNTVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPV 122
Score = 33.5 bits (77), Expect = 0.053
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
N Q + Q Q Q+QQ ++ Q QQ Q+Q+
Sbjct: 84 NTVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPV 122
Score = 32.8 bits (75), Expect = 0.086
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
Q + + Q Q+QQ ++ Q QQ Q+Q+
Sbjct: 82 YRNTVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPV 122
Score = 32.0 bits (73), Expect = 0.17
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
D T + +QA+ + Q+QQ ++ Q QQ Q+Q+
Sbjct: 80 YDYRNTVPQQSQQQAQAQSQEQQDKENSPAQNQQADGQKQKPV 122
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 38.5 bits (90), Expect = 0.002
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ---QQQ 225
+ LQ + + E + Q + Q Q+ ++Q++ + ++ + Q QQ+
Sbjct: 7 NVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQE 63
Score = 36.2 bits (84), Expect = 0.010
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 177 QISNNDEQAKIKMQ------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
NN Q ++ + + Q + Q Q+ ++Q++ + ++ + Q
Sbjct: 3 LAGNNVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAE 58
Score = 36.2 bits (84), Expect = 0.012
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
S E A +Q+ ++Q++ + ++ + Q + QQ+ Q S
Sbjct: 24 SAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLS 71
Score = 32.7 bits (75), Expect = 0.14
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++Q++ + ++ + Q + QQ+ Q Q
Sbjct: 38 VNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQA 73
Score = 32.7 bits (75), Expect = 0.14
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ ++Q++ + ++ + Q + QQ+ Q Q
Sbjct: 38 VNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQA 73
Score = 32.4 bits (74), Expect = 0.23
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQQQQQQQQ 224
LQ +++ K Q++ + ++ + Q QQ+ Q Q QQ ++
Sbjct: 33 LLQEAVNS-------KRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTER 80
Score = 30.0 bits (68), Expect = 1.0
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 166 DIKPNVDNLQTQISNNDEQAK--------IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
++ + I EQ ++ QQ + Q Q+Q + Q++ Q
Sbjct: 93 NLLLQLLQSSRTI---REQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQ 149
Query: 218 QQQQQQQQ 225
++
Sbjct: 150 AEKAYINA 157
Score = 29.3 bits (66), Expect = 2.0
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
L Q+ E + + Q + Q++ Q ++ + Q +Q + +
Sbjct: 119 SRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYINALEGQAEQLTAEVRDI 172
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 38.4 bits (89), Expect = 0.002
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 155 MNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ P + +Q + + +Q +M+ + + QQQ QQQQQQQ
Sbjct: 309 QPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAA 368
Query: 215 QQQQQQQQQQQS 226
QQQ QQ Q
Sbjct: 369 HQQQMNQQVGQG 380
Score = 38.1 bits (88), Expect = 0.003
Identities = 22/38 (57%), Positives = 22/38 (57%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q QQQQ Q QQQ Q QQQQQ QQ
Sbjct: 205 GGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQ 242
Score = 36.9 bits (85), Expect = 0.007
Identities = 21/37 (56%), Positives = 21/37 (56%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
M Q Q QQQ Q QQQQ Q QQQ Q QQQQQ
Sbjct: 201 MPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQ 237
Score = 36.9 bits (85), Expect = 0.007
Identities = 22/38 (57%), Positives = 23/38 (60%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+MQQQ Q QQQQ Q QQQ Q QQQQQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPAD 246
Score = 36.1 bits (83), Expect = 0.010
Identities = 21/42 (50%), Positives = 24/42 (57%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +++ Q Q QQQQ Q QQQ Q QQQQQ QQQ Q
Sbjct: 207 QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQ 248
Score = 36.1 bits (83), Expect = 0.011
Identities = 23/56 (41%), Positives = 25/56 (44%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N Q A+ +M QQQQ Q Q QQ Q Q Q QQQ QQQ QQ
Sbjct: 232 NQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQS 287
Score = 36.1 bits (83), Expect = 0.012
Identities = 21/53 (39%), Positives = 23/53 (43%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQ Q +Q + Q Q QQQQ Q Q QQ Q Q Q QQQ Q
Sbjct: 229 QLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQ 281
Score = 35.7 bits (82), Expect = 0.016
Identities = 21/38 (55%), Positives = 21/38 (55%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q QQQQ Q QQQ Q QQQQQ QQQ
Sbjct: 209 QMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPAD 246
Score = 35.4 bits (81), Expect = 0.019
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q N Q +++ QQQQQ QQQ Q Q QQQQ Q Q QQ Q
Sbjct: 220 QQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQG 268
Score = 35.4 bits (81), Expect = 0.020
Identities = 20/36 (55%), Positives = 20/36 (55%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q QQQ Q QQQQ Q QQQ Q QQQQQ
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMD 239
Score = 35.4 bits (81), Expect = 0.020
Identities = 22/42 (52%), Positives = 23/42 (54%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + QQ Q QQQ Q QQQQQ QQQ Q Q QQQQ
Sbjct: 215 QPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQ 256
Score = 35.4 bits (81), Expect = 0.021
Identities = 20/49 (40%), Positives = 22/49 (44%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + + QQQQ Q QQQ Q QQQQQ QQQ Q Q
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG 252
Score = 35.4 bits (81), Expect = 0.023
Identities = 23/51 (45%), Positives = 25/51 (49%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +Q +MQQQ Q QQQQQ QQQ Q Q QQQQ Q Q
Sbjct: 212 QQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQ 262
Score = 35.0 bits (80), Expect = 0.029
Identities = 21/51 (41%), Positives = 23/51 (45%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q N + + QQQQQ QQQ Q Q QQQQ Q Q QQ Q
Sbjct: 217 GGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQ 267
Score = 35.0 bits (80), Expect = 0.031
Identities = 19/37 (51%), Positives = 19/37 (51%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q QQQ Q QQQQ Q QQQ Q QQQQ
Sbjct: 200 GMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQ 236
Score = 35.0 bits (80), Expect = 0.031
Identities = 18/42 (42%), Positives = 18/42 (42%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QA MQQ Q Q QQ Q QQ Q Q Q Q QQ
Sbjct: 146 QAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGP 187
Score = 35.0 bits (80), Expect = 0.032
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +++ Q Q QQQQQ QQQ Q Q QQQQ Q Q Q
Sbjct: 214 GQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQ 264
Score = 34.6 bits (79), Expect = 0.041
Identities = 20/38 (52%), Positives = 20/38 (52%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQQ Q QQQQQ QQQ Q Q QQQQ Q
Sbjct: 222 QNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQG 259
Score = 34.2 bits (78), Expect = 0.056
Identities = 22/51 (43%), Positives = 23/51 (45%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q +Q QQ Q QQQQQ QQQ Q Q QQQQ Q Q
Sbjct: 213 QGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Score = 33.8 bits (77), Expect = 0.071
Identities = 21/51 (41%), Positives = 24/51 (47%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q +Q + + QQQ QQQ Q Q QQQQ Q Q QQ Q Q
Sbjct: 220 QQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQ 270
Score = 33.4 bits (76), Expect = 0.091
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q GP + + + + QQQ +Q + + + QQQ QQQQQQQ
Sbjct: 304 QGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGG 363
Query: 221 QQQQQ 225
Sbjct: 364 NHPAA 368
Score = 33.4 bits (76), Expect = 0.094
Identities = 20/57 (35%), Positives = 22/57 (38%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
P Q Q + + Q QQQ Q Q QQQQ Q Q QQ Q Q Q
Sbjct: 216 PGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQ 272
Score = 33.1 bits (75), Expect = 0.11
Identities = 18/52 (34%), Positives = 20/52 (38%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + +M QQQ Q Q QQQQ Q Q QQ Q Q Q
Sbjct: 223 NPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVP 274
Score = 33.1 bits (75), Expect = 0.12
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q QQ Q QQ Q Q Q Q QQ QQQ
Sbjct: 152 QQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQ 192
Score = 32.7 bits (74), Expect = 0.15
Identities = 16/36 (44%), Positives = 16/36 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ QQQQQQQ QQQ QQ Q Q
Sbjct: 352 QQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALG 387
Score = 32.3 bits (73), Expect = 0.20
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q +Q+ + Q QQ Q QQ Q Q Q Q QQ QQQ
Sbjct: 144 GGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQ 192
Score = 31.9 bits (72), Expect = 0.25
Identities = 16/53 (30%), Positives = 20/53 (37%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++ N Q + + QQQQQ QQQ QQ Q Q Q
Sbjct: 340 LKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ 392
Score = 31.9 bits (72), Expect = 0.25
Identities = 21/65 (32%), Positives = 26/65 (40%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q G + + Q N +Q ++ QQ Q Q QQQQ Q Q QQ Q Q
Sbjct: 212 QQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQM 271
Query: 221 QQQQQ 225
Q Q
Sbjct: 272 QVPMQ 276
Score = 31.9 bits (72), Expect = 0.31
Identities = 19/45 (42%), Positives = 21/45 (46%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + MQ QQ Q Q Q QQQ QQQ QQ Q Q Q
Sbjct: 253 QQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQ 297
Score = 31.1 bits (70), Expect = 0.48
Identities = 15/54 (27%), Positives = 17/54 (31%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L+ N + QQQQQQ QQQ QQ Q Q
Sbjct: 339 QLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ 392
Score = 30.4 bits (68), Expect = 0.91
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + + Q QQ Q Q Q Q QQ QQQ Q Q
Sbjct: 157 QPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQP 199
Score = 30.4 bits (68), Expect = 0.99
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q ++ MQQQ QQQ QQ Q Q QQ Q Q
Sbjct: 270 QMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQ 309
Score = 30.0 bits (67), Expect = 1.2
Identities = 17/36 (47%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ Q Q Q QQQ QQQ QQ Q Q QQ
Sbjct: 263 PQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQ 298
Score = 29.6 bits (66), Expect = 1.5
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ ++ + +Q + + QQQ QQQ QQ Q Q Q
Sbjct: 338 QQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQ 392
Score = 29.2 bits (65), Expect = 2.0
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +MQ QQQ QQQ QQ Q Q QQ Q
Sbjct: 265 QMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGP 307
Score = 28.8 bits (64), Expect = 2.6
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++++ QQQ QQQ QQ Q Q QQ Q Q
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQ 309
Score = 28.0 bits (62), Expect = 4.4
Identities = 15/37 (40%), Positives = 15/37 (40%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
MQ Q QQ Q Q QQ Q QQ Q Q Q
Sbjct: 141 MQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQA 177
Score = 27.7 bits (61), Expect = 6.1
Identities = 16/49 (32%), Positives = 18/49 (36%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+Q Q +M QQ Q Q Q Q QQ QQQ Q Q
Sbjct: 151 MQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQP 199
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 38.5 bits (90), Expect = 0.002
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
T +A+I +Q + +Q+ QQ + Q +++++ Q +
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSE 218
Score = 36.6 bits (85), Expect = 0.008
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
EQA++ +Q+ QQ + Q +++++ Q + Q++
Sbjct: 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKL 226
Score = 35.1 bits (81), Expect = 0.024
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ +Q + + +Q + +Q+ QQ + Q
Sbjct: 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQ 203
Score = 35.1 bits (81), Expect = 0.025
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N +I + +Q + + +Q + +Q+ QQ + +
Sbjct: 156 NPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA 202
Score = 33.5 bits (77), Expect = 0.066
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + +Q + +Q+ QQ + Q ++++
Sbjct: 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK 210
Score = 32.0 bits (73), Expect = 0.21
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D Q + + +Q + +Q+ QQ + Q +
Sbjct: 164 DALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLE 206
Score = 32.0 bits (73), Expect = 0.26
Identities = 5/40 (12%), Positives = 19/40 (47%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+QAK+ +++++ Q + Q++ ++ + +
Sbjct: 195 RAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234
Score = 30.5 bits (69), Expect = 0.67
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+Q +Q Q++ +++ ++QQ Q+ + ++Q +
Sbjct: 36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSL 71
Score = 30.5 bits (69), Expect = 0.75
Identities = 8/45 (17%), Positives = 24/45 (53%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A K +Q Q++ +++ ++QQ Q+ + ++Q + + + +
Sbjct: 32 SAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIA 76
Score = 30.5 bits (69), Expect = 0.77
Identities = 3/39 (7%), Positives = 13/39 (33%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + ++ + +Q + + +Q + S
Sbjct: 154 ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192
Score = 28.5 bits (64), Expect = 2.6
Identities = 6/42 (14%), Positives = 24/42 (57%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D++ ++Q++ +++ ++QQ Q+ + ++Q + + +
Sbjct: 36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77
Score = 28.5 bits (64), Expect = 2.8
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
A +Q +Q Q++ +++ ++QQ Q+ + ++Q +
Sbjct: 30 AFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKS 70
Score = 27.8 bits (62), Expect = 4.8
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ + Q +++++ Q + Q++ ++ +
Sbjct: 196 AQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRA 231
Score = 27.0 bits (60), Expect = 9.4
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q++ +++ ++QQ Q+ + ++Q + + + S
Sbjct: 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77
Score = 27.0 bits (60), Expect = 9.8
Identities = 5/43 (11%), Positives = 24/43 (55%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+++ + +I+ + +++ ++QQ Q+ + ++Q + + +
Sbjct: 35 ADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 153 DRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQ--------Q 204
D++ ++ + K + LQ Q+ NN + + QQ Q +QQ +
Sbjct: 575 DQIENLARSGDRDQAKQLLSQLQ-QMMNNLQMGQPGQGQQMGDQSGDMEQQMNKLGELMR 633
Query: 205 QQQQQQQQQQQQQQQQQQQQQ 225
+QQQ + + + Q Q++ +
Sbjct: 634 KQQQLRDETFKLDQDQRRDRM 654
Score = 31.9 bits (72), Expect = 0.26
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--- 221
+D++ +D ++ + D ++ Q QQ Q Q Q QQ Q +QQ
Sbjct: 568 QDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQMGQPGQGQQMGDQSGDMEQQMNK 627
Query: 222 ------QQQQ 225
+QQQ
Sbjct: 628 LGELMRKQQQ 637
Score = 27.6 bits (61), Expect = 6.7
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 149 QFFGDRMNLISHQCGPEDIKPNVDNLQTQISNND--EQAKIKMQQQQQQQQQQQQQQQQQ 206
Q FGD M P+ N Q + + Q + + Q Q + + Q
Sbjct: 661 QNFGDDM--------PQQ--DGQPNGQPNLHDRLRKLQQEEAKRGLGQSQGGLKGELGQL 710
Query: 207 QQQQQQQQQQQQQQQQQQQS 226
Q Q Q + Q S
Sbjct: 711 GQGLQNLGIQPGKGFDQADS 730
>gnl|CDD|235585 PRK05733, PRK05733, single-stranded DNA-binding protein;
Provisional.
Length = 172
Score = 36.8 bits (85), Expect = 0.003
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D++ + L + +D+ + Q +QQ Q+ QQ QQQ + QQ Q
Sbjct: 103 DMQGTMQLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
Score = 36.8 bits (85), Expect = 0.004
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D+Q Q +QQ Q+ QQ QQQ + QQ Q
Sbjct: 117 GDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPAPQPAA 161
Score = 34.9 bits (80), Expect = 0.012
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q +QQ Q+ QQ QQQ + QQ +
Sbjct: 120 QGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPAPQQPA 156
Score = 34.1 bits (78), Expect = 0.029
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q Q Q +QQ Q+ QQ QQQ +
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPA 151
Score = 33.0 bits (75), Expect = 0.061
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q +QQ Q+ QQ QQQ + +
Sbjct: 116 QGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQQSRPA 151
Score = 29.9 bits (67), Expect = 0.73
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D Q +++ + Q Q Q Q +QQ Q+ QQ QQ
Sbjct: 103 DMQGTMQLLGGRPQGDDQGGQGGGNYNQSAPRQQAQRPQQAAQQ 146
>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis,
outer membrane].
Length = 372
Score = 37.4 bits (86), Expect = 0.004
Identities = 4/53 (7%), Positives = 14/53 (26%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L + ++ ++ Q + Q + + + Q +
Sbjct: 120 LLAPAELGDLQREAKLAAEKAAVSQAELDAAQALLRAAEALVEAAQAALASAK 172
Score = 36.6 bits (84), Expect = 0.007
Identities = 5/53 (9%), Positives = 18/53 (33%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ + +AK+ ++ Q + Q + + + Q + +
Sbjct: 122 APAELGDLQREAKLAAEKAAVSQAELDAAQALLRAAEALVEAAQAALASAKLN 174
Score = 36.2 bits (83), Expect = 0.010
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L + QA + + Q + Q + Q++ + ++ Q
Sbjct: 92 QLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAE 146
Score = 34.3 bits (78), Expect = 0.041
Identities = 5/51 (9%), Positives = 18/51 (35%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +QA+ ++ + Q + Q++ + ++ Q +
Sbjct: 100 SAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAA 150
Score = 34.3 bits (78), Expect = 0.042
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ +LQ + E+A + Q + Q + + + Q + +
Sbjct: 120 LLAPAELGDLQREAKLAAEKAAV--SQAELDAAQALLRAAEALVEAAQAALASAKLNLEY 177
Score = 33.9 bits (77), Expect = 0.055
Identities = 4/57 (7%), Positives = 17/57 (29%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q ++ + + + ++ Q + Q + + + Q +
Sbjct: 113 QLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAAQALLRAAEALVEAAQAALA 169
Score = 32.0 bits (72), Expect = 0.24
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
QA++ Q + + + Q + + +
Sbjct: 143 SQAELDAAQALLRAAEALVEAAQAALASAKLNLEYTR 179
Score = 31.2 bits (70), Expect = 0.46
Identities = 2/44 (4%), Positives = 11/44 (25%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ A+ ++ + + Q + + +
Sbjct: 148 DAAQALLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGAR 191
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 37.6 bits (87), Expect = 0.004
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q Q++QQ + +Q Q +QQQ + Q Q+QS
Sbjct: 458 PRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQS 494
Score = 36.8 bits (85), Expect = 0.007
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + Q Q Q++QQ + +Q Q +QQQ + Q
Sbjct: 454 GQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQN 489
Score = 36.4 bits (84), Expect = 0.009
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q++QQ + +Q Q +QQQ + Q Q+Q Q
Sbjct: 460 SQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQG 496
Score = 36.4 bits (84), Expect = 0.009
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +D+Q + + + Q+ + Q Q Q++QQ + +Q Q +QQQ +S
Sbjct: 437 FLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRS 486
Score = 36.4 bits (84), Expect = 0.010
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q+ + Q Q Q++QQ + +Q Q +QQQ + Q
Sbjct: 453 RGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQ 488
Score = 36.0 bits (83), Expect = 0.013
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q + Q Q Q++QQ + +Q Q +QQQ + Q Q+Q Q
Sbjct: 455 QRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQ 495
Score = 36.0 bits (83), Expect = 0.013
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + Q Q Q++QQ + +Q Q +QQQ + Q Q
Sbjct: 456 RGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQ 491
Score = 35.7 bits (82), Expect = 0.017
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ + Q Q Q++QQ + +Q Q +QQQ +
Sbjct: 453 RGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQ 488
Score = 35.7 bits (82), Expect = 0.019
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q + + + + + Q Q Q++QQ + +Q Q +QQQ + Q Q
Sbjct: 442 DQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQ 491
Score = 34.9 bits (80), Expect = 0.031
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + + +QQ + +Q Q +QQQ + Q Q+Q Q Q +
Sbjct: 461 QPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRG 503
Score = 31.8 bits (72), Expect = 0.32
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q + + Q + +Q Q +QQQ + Q Q+Q Q Q + Q
Sbjct: 460 SQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQ 504
Score = 30.3 bits (68), Expect = 0.78
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ Q QQ+ + + + Q+ + Q Q Q++QQ +
Sbjct: 435 IRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNR 471
Score = 30.3 bits (68), Expect = 0.78
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q + + + + + +Q Q +QQQ + Q Q+Q Q Q + Q
Sbjct: 455 QRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQ 504
Score = 28.7 bits (64), Expect = 2.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
I+ Q QQ+ + + + Q+ + Q Q Q++QQ +
Sbjct: 435 IRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNR 471
Score = 28.7 bits (64), Expect = 2.7
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q QQ+ + + + Q+ + Q Q Q++QQ
Sbjct: 436 RFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNR 471
Score = 27.2 bits (60), Expect = 8.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ +Q + + Q +QQQ + Q Q+Q Q Q + Q
Sbjct: 459 RSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQ 504
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 37.1 bits (86), Expect = 0.005
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+E+ K +Q QQ+QQ+ Q Q + +++ Q++ +QQ++Q ++
Sbjct: 91 AEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQRRQNEE 133
Score = 34.7 bits (80), Expect = 0.023
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + K Q+Q QQ+QQ+ Q Q + +++ Q++ +QQ++Q ++
Sbjct: 90 EAEERRKTLQEQTQQEQQRAQYQDELARKRYQKELEQQRRQNEE 133
Score = 32.0 bits (73), Expect = 0.20
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+AKIK + QQ Q + ++ + + +++++ Q+Q QQ+QQ+ Q
Sbjct: 69 EAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQ 110
Score = 30.5 bits (69), Expect = 0.53
Identities = 9/43 (20%), Positives = 28/43 (65%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
DE A+ + Q++ +QQ++Q ++ + Q++ +Q+ ++ +++
Sbjct: 113 DELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEE 155
Score = 30.1 bits (68), Expect = 0.77
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-----------QQQQQQQQS 226
KMQ++ +Q + + + ++ + QQ Q + ++ Q+Q QQ+Q
Sbjct: 57 SKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQ 107
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/60 (20%), Positives = 32/60 (53%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E K Q ++ ++ + + Q + ++ + + +++++ Q+Q QQ+QQ+ Q Q +
Sbjct: 55 ELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDE 114
Score = 29.0 bits (65), Expect = 1.8
Identities = 6/51 (11%), Positives = 30/51 (58%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +++ Q +++ Q++Q ++ + Q++ +Q+ ++ +++ + +++
Sbjct: 112 QDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRE 162
Score = 27.8 bits (62), Expect = 4.3
Identities = 8/51 (15%), Positives = 29/51 (56%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q + ++ K Q++ +QQ++Q ++ + Q++ +Q+ ++ +++
Sbjct: 105 EQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEE 155
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 35.3 bits (82), Expect = 0.005
Identities = 2/41 (4%), Positives = 20/41 (48%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E+A+ ++ + + ++ + + + + + + +++ +
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 35.0 bits (81), Expect = 0.007
Identities = 1/37 (2%), Positives = 16/37 (43%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q++ +++ + + ++ + + + + + +
Sbjct: 78 AQEEAEERLAAARAAAEAERAELEAELAEAAAEAEAL 114
Score = 34.6 bits (80), Expect = 0.009
Identities = 2/43 (4%), Positives = 20/43 (46%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E A+ + +++ + + ++ + + + + + + +++
Sbjct: 76 EAAQEEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEEL 118
Score = 33.4 bits (77), Expect = 0.030
Identities = 1/35 (2%), Positives = 17/35 (48%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q++ +++ + + ++ + + + + + ++
Sbjct: 79 QEEAEERLAAARAAAEAERAELEAELAEAAAEAEA 113
Score = 29.6 bits (67), Expect = 0.56
Identities = 1/38 (2%), Positives = 17/38 (44%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + Q++ +++ + + ++ + + + + +
Sbjct: 71 VAALWEAAQEEAEERLAAARAAAEAERAELEAELAEAA 108
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 36.1 bits (84), Expect = 0.006
Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ LQ +++ E+ + + Q+Q + QQ+ Q+ +Q+ + + ++ Q++
Sbjct: 68 LPELQQELAELQEE----LAELQEQLAELQQENQELKQELSTLEAELERLQKELAR 119
Score = 33.8 bits (78), Expect = 0.036
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L S A+ ++ + QQ+ + Q++ + Q+Q + QQ+ Q+ +Q+ +
Sbjct: 58 LSDTPS-----ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELST 105
Score = 28.8 bits (65), Expect = 1.6
Identities = 6/45 (13%), Positives = 26/45 (57%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q+S N + + ++ +++ + +Q+ + + + ++ Q+ +Q++
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRW 166
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ LQ +++ EQ Q+ Q+ +Q+ + + ++ Q++ + +Q +
Sbjct: 75 LAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Score = 26.5 bits (59), Expect = 9.7
Identities = 4/77 (5%), Positives = 31/77 (40%), Gaps = 15/77 (19%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQ---------------QQQQQQQQQQQ 209
+++ + LQ + ++ + ++ Q++ ++ ++ +++
Sbjct: 83 AELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENRELREELA 142
Query: 210 QQQQQQQQQQQQQQQQS 226
+ +Q+ + + + ++
Sbjct: 143 ELKQENEALEAENERLQ 159
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 36.8 bits (85), Expect = 0.006
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
E+++ + D N Q + QQ QQQ Q QQQQ Q Q+
Sbjct: 282 EELRESFDGYIGNAFANQIQLNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 36.0 bits (83), Expect = 0.014
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ 212
Q ++ QQ QQQ Q QQQQ Q Q+
Sbjct: 298 NQIQLNFVIPQQAQQQGQGQQQQAQATAQE 327
Score = 35.6 bits (82), Expect = 0.016
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQ QQQ Q QQQQ Q Q++
Sbjct: 298 NQIQLNFVIPQQAQQQGQGQQQQAQATAQEA 328
>gnl|CDD|191602 pfam06752, E_Pc_C, Enhancer of Polycomb C-terminus. This family
represents the C-terminus of eukaryotic enhancer of
polycomb proteins, which have roles in heterochromatin
formation. This family contains several conserved
motifs.
Length = 230
Score = 36.5 bits (84), Expect = 0.006
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQ QQQ Q+QQ Q QQQQQQQ Q
Sbjct: 6 QYQQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAPQD 42
Score = 35.4 bits (81), Expect = 0.014
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q QQ QQQ Q+QQ Q QQQQQQQ
Sbjct: 5 EQYQQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAPQ 41
Score = 30.0 bits (67), Expect = 0.72
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
EQ + QQ Q+QQ Q QQQQQQQ Q
Sbjct: 5 EQYQQHQQQLVLMQKQQLAQLQQQQQQQNSSAATAPQ 41
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 36.9 bits (85), Expect = 0.007
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
C P + Q E ++ QQ QQ Q+++ Q++Q ++QQ +Q
Sbjct: 208 LCTPCMPDTYHERKQVL---EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQ 264
Query: 221 QQQQ 224
+ +
Sbjct: 265 LRAR 268
Score = 29.2 bits (65), Expect = 2.4
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
QTQ S+ K + Q++Q ++QQ +Q + + ++ + Q+ ++ Q++
Sbjct: 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQER 285
Score = 28.8 bits (64), Expect = 2.6
Identities = 8/41 (19%), Positives = 24/41 (58%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++ +++ + ++ QQ QQ Q+++ Q++Q ++Q
Sbjct: 219 ERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ 259
Score = 28.8 bits (64), Expect = 2.7
Identities = 9/52 (17%), Positives = 21/52 (40%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
S +AK+ M++ +QQ ++Q++ Q Q+ + +
Sbjct: 313 HTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
Score = 28.4 bits (63), Expect = 4.1
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L T + + +Q +++ + ++ QQ QQ Q+++ Q++Q
Sbjct: 205 LLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLK 257
Score = 28.0 bits (62), Expect = 5.0
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
LQ E + +Q ++ Q +Q Q + QQ Q+
Sbjct: 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELAL 643
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 36.0 bits (83), Expect = 0.009
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 134 MNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISN-NDEQAKIKMQQQ 192
FPKP + + + D L++ Q +L +++ EQ K++ ++Q
Sbjct: 20 YELQFPKPIEVEVEEEIQKDHEELLAQQ----------KSLHKELNQLRQEQQKLERERQ 69
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++Q Q+ QQQ ++ + +QQ Q++QQ+
Sbjct: 70 QLLADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
Score = 31.4 bits (71), Expect = 0.25
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ + ++ Q +Q+QQ+ ++++QQ ++Q Q+ QQQ ++ ++
Sbjct: 42 ELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEA 91
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 36.2 bits (84), Expect = 0.009
Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 4/103 (3%)
Query: 124 TKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDE 183
+ N A + +P + + Q PE P +
Sbjct: 69 HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQP---- 124
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q Q +Q QQ Q Q Q QQ+
Sbjct: 125 APQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQA 167
Score = 34.2 bits (79), Expect = 0.034
Identities = 11/62 (17%), Positives = 15/62 (24%)
Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ Q + A +Q QQ Q Q Q QQ Q
Sbjct: 111 AQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQP 170
Query: 223 QQ 224
+
Sbjct: 171 AE 172
Score = 33.9 bits (78), Expect = 0.046
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +Q QQ Q Q Q QQ Q +
Sbjct: 137 QPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAE 172
Score = 32.3 bits (74), Expect = 0.15
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q QQ Q Q Q QQ Q +
Sbjct: 139 EQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
Score = 31.2 bits (71), Expect = 0.36
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q Q QQ Q + Q +
Sbjct: 146 VSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEP 181
Score = 31.2 bits (71), Expect = 0.40
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
QQ Q Q Q QQ Q +
Sbjct: 142 LQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176
Score = 31.2 bits (71), Expect = 0.40
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ Q Q Q QQ Q +
Sbjct: 142 LQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAA 176
Score = 30.4 bits (69), Expect = 0.70
Identities = 10/62 (16%), Positives = 17/62 (27%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P LQ +S A + Q QQ Q + Q + + +
Sbjct: 132 PAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDK 191
Query: 224 QQ 225
+
Sbjct: 192 PK 193
Score = 28.1 bits (63), Expect = 3.7
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQ Q + Q + + +
Sbjct: 150 VAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPA 186
Score = 28.1 bits (63), Expect = 4.2
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q QQ Q + Q + + + ++
Sbjct: 153 APQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 36.2 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+QQ Q+Q+Q QQ +QQ+ QQ + +Q QQQ+
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQT 183
Score = 35.4 bits (81), Expect = 0.017
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ + +Q+Q+Q QQ +QQ+ QQ + +Q QQQ + Q
Sbjct: 147 EQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAA 189
Score = 35.4 bits (81), Expect = 0.018
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+EQ + QQ Q+Q+Q QQ +QQ+ QQ + +Q QQQ + S
Sbjct: 142 NEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTS 186
Score = 33.5 bits (76), Expect = 0.074
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + + ++ QQ+ QQ + +Q QQQ + Q Q Q +Q + +
Sbjct: 150 QQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPA 201
Score = 32.7 bits (74), Expect = 0.11
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N QT + + QQ +QQ+ QQ + +Q QQQ + Q Q Q
Sbjct: 142 NEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQP 195
Score = 32.7 bits (74), Expect = 0.11
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++ N++ + + Q Q+Q+Q QQ +QQ+ QQ + +Q QQQ
Sbjct: 137 VEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQ 182
Score = 32.7 bits (74), Expect = 0.12
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
PE + P L Q+ + Q ++ + +Q +Q+QQ Q+Q+Q QQ +QQ+ Q
Sbjct: 111 PEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQ 170
Query: 224 QQ 225
Q
Sbjct: 171 QS 172
Score = 32.0 bits (72), Expect = 0.20
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + ++ ++ +QQ+ QQ + +Q QQQ + Q Q Q +Q
Sbjct: 148 QRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQS 198
Score = 32.0 bits (72), Expect = 0.21
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQ Q + ++ QQ + +Q QQQ + Q Q Q +Q + Q
Sbjct: 153 LQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQ 204
Score = 32.0 bits (72), Expect = 0.22
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + QQ + +Q QQQ + Q Q Q +Q + QQ
Sbjct: 163 AEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQ 205
Score = 31.6 bits (71), Expect = 0.32
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q EQ ++ Q + +Q QQQ + Q Q Q +Q + QQ
Sbjct: 155 RQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQ 205
Score = 30.0 bits (67), Expect = 0.83
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q++ A+ +Q QQQ + Q Q Q +Q + QQ Q
Sbjct: 159 AQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQ 208
Score = 28.5 bits (63), Expect = 2.6
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q++ Q QQQ + Q Q Q +Q + QQ Q Q+
Sbjct: 163 AEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQT 213
Score = 27.3 bits (60), Expect = 7.3
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
Q +++ + QQQ + Q Q Q +Q + QQ Q Q
Sbjct: 165 QQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQ 212
>gnl|CDD|151422 pfam10975, DUF2802, Protein of unknown function (DUF2802). This
bacterial family of proteins has no known function.
Length = 70
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
I M Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 1 IGMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 31.4 bits (72), Expect = 0.061
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ + +QQ ++ Q +Q++ +QQ QS
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQS 31
Score = 31.0 bits (71), Expect = 0.071
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+ Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 1 IGMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 30.2 bits (69), Expect = 0.13
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ + +QQ ++ Q +Q++ +QQ Q
Sbjct: 2 GMGQRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 26.0 bits (58), Expect = 5.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQ 209
Q +++QQ ++ Q +Q++ +QQ Q
Sbjct: 5 QRLAELEQQLKELQDRQEELEQQDPQ 30
Score = 25.6 bits (57), Expect = 7.0
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQ 210
++ +QQ ++ Q +Q++ +QQ Q
Sbjct: 6 RLAELEQQLKELQDRQEELEQQDPQ 30
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 36.3 bits (84), Expect = 0.011
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
DE+ ++ QQQQQQ + + QQ+ ++QQ QQ +
Sbjct: 230 DEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAE 273
Score = 35.2 bits (81), Expect = 0.022
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ ++E+ + QQQQQQ + + QQ+ ++QQ QQ ++
Sbjct: 226 QVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEE 274
Score = 33.6 bits (77), Expect = 0.076
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQQQQ + + QQ+ ++QQ QQ +
Sbjct: 238 AQQQQQQSLNWLTRLDELQQEASRRQQALQQALAA 272
Score = 32.5 bits (74), Expect = 0.22
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
DE+ +++Q +Q + Q+QQ Q Q Q Q QQ +
Sbjct: 775 DEETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPD 816
Score = 30.9 bits (70), Expect = 0.65
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQ 224
Q Q Q ++Q QQQQQQ + + QQ+ ++QQ QQ
Sbjct: 217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALA 271
Score = 29.4 bits (66), Expect = 2.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A+ + ++Q + Q+ + Q Q QQ Q QQQ +Q+QQ
Sbjct: 603 DAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQ 645
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +Q +Q + Q+QQ Q Q Q Q QQ +
Sbjct: 780 TQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHR 814
Score = 29.0 bits (65), Expect = 2.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D Q + + Q + Q+ + Q Q QQ Q QQQ +Q+QQQ
Sbjct: 603 DAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQ 645
Score = 29.0 bits (65), Expect = 2.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +Q +Q + Q+QQ Q Q Q Q QQ
Sbjct: 780 TQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHR 814
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +Q +Q + Q+QQ Q Q Q Q QQ +
Sbjct: 781 QLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDG 817
Score = 28.2 bits (63), Expect = 3.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q QQ++ Q Q Q Q+Q Q+ + +Q+
Sbjct: 434 QIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQR 469
Score = 28.2 bits (63), Expect = 4.0
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ K Q Q Q Q+Q Q+ + +Q+ +++ QQ
Sbjct: 436 VPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQ 476
Score = 28.2 bits (63), Expect = 4.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q++ ++Q + Q+ + Q Q QQ Q QQQ
Sbjct: 602 LDAQEEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQ 638
Score = 27.5 bits (61), Expect = 8.6
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q QQ++ Q Q Q Q+Q Q+ + +Q
Sbjct: 434 QIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQR 469
Score = 27.1 bits (60), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 184 QAKIKMQQQQQQQQQ---QQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I QQ++ Q Q Q Q+Q Q+ + +Q+ +++ QQ
Sbjct: 432 HGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQ 476
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 35.5 bits (82), Expect = 0.012
Identities = 12/44 (27%), Positives = 39/44 (88%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ E+AK ++Q+ + ++ +QQQQ++++++++Q+++QQ++++++Q+
Sbjct: 176 SQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 33.2 bits (76), Expect = 0.072
Identities = 8/34 (23%), Positives = 32/34 (94%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+++ +QQQQ++++++++Q+++QQ++++++Q+ ++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 29.3 bits (66), Expect = 1.4
Identities = 7/32 (21%), Positives = 26/32 (81%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q Q+Q++ Q+ +++Q+Q++++++++ + +Q+
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAELRQR 128
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/33 (21%), Positives = 26/33 (78%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
K Q+Q++ Q+ +++Q+Q++++++++ + +Q+
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQR 128
Score = 28.9 bits (65), Expect = 1.8
Identities = 8/52 (15%), Positives = 31/52 (59%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q ++ + Q+Q++++++++ + +Q+ +++ ++ +Q+ QQ +
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQ 148
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/58 (17%), Positives = 30/58 (51%), Gaps = 16/58 (27%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQ----------------QQQQQQQQQQQQQS 226
AK +Q++ Q+ +++Q+Q++++++++ +Q+ QQ +Q+
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPK 152
Score = 27.0 bits (60), Expect = 7.6
Identities = 8/47 (17%), Positives = 34/47 (72%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + ++ +++ Q+ + ++ +QQQQ++++++++Q+++QQ++
Sbjct: 167 GSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEE 213
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 34.3 bits (79), Expect = 0.012
Identities = 9/32 (28%), Positives = 24/32 (75%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
K+ + Q+Q + ++Q++ Q++Q +Q+++ Q+Q
Sbjct: 13 KLAELQRQAKLEEQREAQEEQARQEEEAQKQA 44
Score = 34.3 bits (79), Expect = 0.013
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+E +I+ ++ + Q+Q + ++Q++ Q++Q +Q+++ Q+Q
Sbjct: 4 EELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQA 44
Score = 32.3 bits (74), Expect = 0.054
Identities = 8/37 (21%), Positives = 28/37 (75%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++++++ + Q+Q + ++Q++ Q++Q +Q+++ Q+Q
Sbjct: 8 EIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQA 44
Score = 32.3 bits (74), Expect = 0.056
Identities = 8/34 (23%), Positives = 25/34 (73%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+++ + Q+Q + ++Q++ Q++Q +Q+++ Q+Q
Sbjct: 11 RRKLAELQRQAKLEEQREAQEEQARQEEEAQKQA 44
Score = 31.6 bits (72), Expect = 0.10
Identities = 8/34 (23%), Positives = 26/34 (76%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++ + Q+Q + ++Q++ Q++Q +Q+++ Q+Q+
Sbjct: 11 RRKLAELQRQAKLEEQREAQEEQARQEEEAQKQA 44
>gnl|CDD|113452 pfam04684, BAF1_ABF1, BAF1 / ABF1 chromatin reorganising factor.
ABF1 is a sequence-specific DNA binding protein involved
in transcription activation, gene silencing and
initiation of DNA replication. ABF1 is known to remodel
chromatin, and it is proposed that it mediates its
effects on transcription and gene expression by
modifying local chromatin architecture. These functions
require a conserved stretch of 20 amino acids in the
C-terminal region of ABF1 (amino acids 639 to 662 S.
cerevisiae). The N-terminal two thirds of the protein
are necessary for DNA binding, and the N-terminus (amino
acids 9 to 91 in S. cerevisiae) is thought to contain a
novel zinc-finger motif which may stabilise the protein
structure.
Length = 508
Score = 35.9 bits (82), Expect = 0.013
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q Q + Q Q Q QQQ Q Q+Q QQ
Sbjct: 297 HHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQH 338
Score = 35.5 bits (81), Expect = 0.018
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
Q ++ + Q Q + Q Q Q QQQ Q Q+Q QQ
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQH 338
Score = 34.7 bits (79), Expect = 0.029
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
D+ Q Q ++ Q + Q Q Q QQQ Q Q+Q QQ
Sbjct: 290 DHHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQQDLQHQEQHQQH 338
Score = 28.5 bits (63), Expect = 2.9
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q + Q Q Q Q
Sbjct: 291 HHQHQHHHHPSIPAHHQHQLPEGHQHDHQHHHQHQQ 326
Score = 27.0 bits (59), Expect = 8.8
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q Q+Q QQ Q + S
Sbjct: 319 QHHHQHQQQDLQHQEQHQQHVDNDHHVYQDRIGSIS 354
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2
snRNP with pre-mRNA.
Length = 612
Score = 35.8 bits (82), Expect = 0.013
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
K M+Q +Q +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 68 KYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 33.9 bits (77), Expect = 0.070
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++AK +Q +Q +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 64 QKAKKYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 33.9 bits (77), Expect = 0.070
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ 212
++ K + +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 72 EQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 33.5 bits (76), Expect = 0.072
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D+ K K +Q +Q +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 61 DDIQKAKKYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 33.1 bits (75), Expect = 0.11
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+D Q K +Q +Q +Q + QQQQ + QQ+QQQ+QQ
Sbjct: 61 DDIQKAKKYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQ 102
Score = 32.7 bits (74), Expect = 0.14
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K ++ +Q +Q +Q + QQQQ + QQ+QQQ+QQ+
Sbjct: 65 KAKKYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQQA 103
Score = 32.7 bits (74), Expect = 0.16
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+++ I+ ++ +Q +Q +Q + QQQQ + QQ+QQQ+Q
Sbjct: 58 EQKDDIQKAKKYAMEQSIKQVLLKQTKAHQQQQLENQQRQQQRQ 101
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 35.7 bits (81), Expect = 0.014
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P+ P N Q +Q K+++ QQQ+ + Q+ +QQ+QQQ Q QQQQQQ+ QQQ
Sbjct: 309 PQSAPPPAMNPQHIAQLAQQQNKMRLLQQQEMEMQRIEQQRQQQIMHQHQQQQQQEHQQQ 368
Query: 224 Q 224
Q
Sbjct: 369 Q 369
Score = 34.9 bits (79), Expect = 0.026
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E +++QQ+QQQ Q QQQQQQ+ QQQQ QQQQQ Q
Sbjct: 339 EMEMQRIEQQRQQQIMHQHQQQQQQEHQQQQMLLQQQQQMHQ 380
Score = 33.8 bits (76), Expect = 0.074
Identities = 22/52 (42%), Positives = 26/52 (50%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
N Q + Q +QQ Q + Q+Q Q QQQQ Q QQ QQQ QQ Q
Sbjct: 388 NGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQH 439
Score = 30.7 bits (68), Expect = 0.57
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ Q + Q+Q Q QQQQ Q QQ QQQ QQ Q
Sbjct: 405 QQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQ 438
Score = 29.9 bits (66), Expect = 1.2
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
M+ Q+Q Q QQQQ Q QQ QQQ QQ Q Q
Sbjct: 409 HMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
Score = 29.5 bits (65), Expect = 1.3
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q + Q+Q Q QQQQ Q QQ QQQ QQ +
Sbjct: 405 QQMQHMRLQEQIQHQQQQAQHHQQAQQQHQQPA 437
Score = 29.2 bits (64), Expect = 1.9
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+++Q+Q Q QQQQ Q QQ QQQ QQ Q Q
Sbjct: 409 HMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
Score = 29.2 bits (64), Expect = 1.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q++ + A Q QQ Q + Q+Q Q QQQQ Q QQ QQQ Q
Sbjct: 384 HHQMNGGGQFATQAHQHAAYLQQMQHMRLQEQIQHQQQQAQHHQQAQQQHQ 434
Score = 26.8 bits (58), Expect = 9.9
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+ +++ Q Q QQQQ Q QQ QQQ QQ Q Q
Sbjct: 408 QHMRLQEQIQHQQQQAQHHQQAQQQHQQPAQHGQ 441
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 35.6 bits (83), Expect = 0.015
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + A+ Q +Q+QQQ Q+Q+ +++ Q Q Q QS
Sbjct: 236 EEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQS 286
Score = 35.2 bits (82), Expect = 0.020
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
V L + +E+ + + Q + Q +Q+QQQ Q+Q+ +++
Sbjct: 220 VAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQ 275
Score = 33.7 bits (78), Expect = 0.064
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ A Q +Q+QQQ Q+Q+ +++ Q Q Q
Sbjct: 234 VEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQ 283
Score = 33.3 bits (77), Expect = 0.095
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E+ + + + +Q+QQQ Q+Q+ +++ Q Q Q Q
Sbjct: 231 EEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDPP 290
Query: 225 Q 225
Sbjct: 291 P 291
Score = 32.5 bits (75), Expect = 0.17
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+QQQ Q+Q+ +++ Q Q Q Q
Sbjct: 247 PATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDPP 290
Score = 30.6 bits (70), Expect = 0.56
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+QQQ Q+Q+ +++ Q Q Q Q
Sbjct: 256 PKQEQQQAPPQRQEPEKEAQPVNVQPAQFQSFDPPP 291
Score = 29.4 bits (67), Expect = 1.3
Identities = 13/68 (19%), Positives = 28/68 (41%)
Query: 156 NLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
L++ G E+ + + ++ + +Q+QQQ Q+Q+ +++ Q
Sbjct: 218 ELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPV 277
Query: 216 QQQQQQQQ 223
Q Q Q
Sbjct: 278 NVQPAQFQ 285
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional.
Length = 251
Score = 35.4 bits (82), Expect = 0.015
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + +K Q + + +Q ++ + + Q+Q+QQ Q
Sbjct: 207 HKKKSSKEYKLQNGEFGKSAIEQFLKKSPKGNIELQEQEQQAIQT 251
Score = 33.1 bits (76), Expect = 0.081
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +++ + + Q + + +Q ++ + + Q+Q+QQ Q
Sbjct: 207 HKKKSSKEYKLQNGEFGKSAIEQFLKKSPKGNIELQEQEQQAIQT 251
Score = 32.3 bits (74), Expect = 0.16
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K + Q + + +Q ++ + + Q+Q+QQ Q+
Sbjct: 211 SSKEYKLQNGEFGKSAIEQFLKKSPKGNIELQEQEQQAIQT 251
Score = 28.4 bits (64), Expect = 2.5
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K K ++ + Q + + +Q ++ + + Q+Q+QQ+
Sbjct: 207 HKKKSSKEYKLQNGEFGKSAIEQFLKKSPKGNIELQEQEQQA 248
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 35.1 bits (81), Expect = 0.025
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 164 PEDIKPNVDNLQTQI--SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
D+K VDN+ T+ + D Q I+ ++ + Q + Q + + Q + +++
Sbjct: 856 RNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKS 915
Query: 222 QQQQ 225
Q++
Sbjct: 916 AQER 919
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 34.8 bits (80), Expect = 0.025
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 155 MNLISHQCG-PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
L Q G P+ +P +++ Q +M+ Q+ Q Q +Q +Q + ++Q
Sbjct: 68 KALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQP 127
Query: 214 QQQQQQQQQQQQS 226
+ Q Q+ Q Q +
Sbjct: 128 RTQSQKAQSQATT 140
Score = 28.3 bits (63), Expect = 3.5
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 167 IKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
IK D + A ++ +Q+Q +Q + Q+ Q Q +Q +Q + ++
Sbjct: 67 IKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEE 125
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 34.6 bits (80), Expect = 0.026
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
L+ Q +D + Q+ +Q+ + + + ++ Q+Q + ++ QQ
Sbjct: 102 QTLEFQAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQ 154
Score = 33.1 bits (76), Expect = 0.087
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ A QQ+ +Q+ + + + ++ Q+Q + ++ QQ
Sbjct: 110 ESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQ 154
Score = 30.4 bits (69), Expect = 0.65
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ+ +Q+ + + + ++ Q+Q + +
Sbjct: 118 QQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKK 150
Score = 28.1 bits (63), Expect = 3.6
Identities = 5/39 (12%), Positives = 20/39 (51%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++ K + + + + ++ Q+Q + ++ QQ +++
Sbjct: 120 QRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKE 158
Score = 28.1 bits (63), Expect = 4.4
Identities = 4/36 (11%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + ++ Q+Q + ++ QQ +++ +
Sbjct: 128 EASAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGA 163
Score = 27.7 bits (62), Expect = 4.6
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q + + + ++ Q+Q + ++ QQ +++ +
Sbjct: 123 KQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGA 163
Score = 26.9 bits (60), Expect = 8.9
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 183 EQAKIKMQQQQQQQQQ-------QQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q I M QQ + Q QQQ+ +Q+ + + + ++ Q+
Sbjct: 93 MQQTIDMTQQTLEFQAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQE 142
Score = 26.9 bits (60), Expect = 9.6
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ--- 217
Q G D + + + A++K ++ Q+Q + ++ QQ +++ +
Sbjct: 107 QAGESDSAGGTQQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGAIEI 166
Query: 218 QQQQQQ 223
+ QQ
Sbjct: 167 ESLGQQ 172
>gnl|CDD|225707 COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 206
Score = 34.3 bits (79), Expect = 0.027
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQ + +Q + + + + QQ ++Q Q Q+ Q +Q QQ
Sbjct: 45 LQDRQIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQ 96
Score = 33.1 bits (76), Expect = 0.068
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + QQ ++Q Q Q+ Q +Q QQ+
Sbjct: 62 TEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKR 98
Score = 32.0 bits (73), Expect = 0.15
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + QQ ++Q Q Q+ Q +Q QQ+++
Sbjct: 63 EIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRA 99
Score = 31.2 bits (71), Expect = 0.33
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + QQ ++Q Q Q+ Q +Q Q
Sbjct: 61 TTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQ 96
Score = 30.8 bits (70), Expect = 0.35
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+I + + + QQ ++Q Q Q+ Q +Q QQ++
Sbjct: 61 TTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGW 101
Score = 30.8 bits (70), Expect = 0.36
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + + QQ ++Q Q Q+ Q +Q QQ++
Sbjct: 61 TTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGW 101
Score = 30.0 bits (68), Expect = 0.65
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E A + + + QQ ++Q Q Q+ Q +Q QQ++
Sbjct: 63 EIALLDAEIAEIQQLKEQTQALLQRLQVIEQLQQKRAGWSVL 104
Score = 28.9 bits (65), Expect = 1.6
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 185 AKIKMQQQQQQQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+I QQQ+ + + + QQ ++Q Q Q+ Q
Sbjct: 48 RQIAEQQQRNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQV 90
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 34.9 bits (81), Expect = 0.027
Identities = 9/50 (18%), Positives = 34/50 (68%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
LQ QI +++ + + +++ Q+++Q + ++ Q++ + + Q+++++Q++
Sbjct: 76 LQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKK 125
Score = 34.5 bits (80), Expect = 0.028
Identities = 6/44 (13%), Positives = 33/44 (75%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + + K +++ +++++Q+Q+ Q+ +++Q ++++++ Q+++ +
Sbjct: 213 YERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256
Score = 34.1 bits (79), Expect = 0.038
Identities = 3/44 (6%), Positives = 32/44 (72%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + ++++++++++++++ + Q+Q +++++++Q++ ++
Sbjct: 50 ERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEE 93
Score = 34.1 bits (79), Expect = 0.038
Identities = 8/43 (18%), Positives = 35/43 (81%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + K +Q+++++ +++++Q+Q+ Q+ +++Q ++++++ Q++
Sbjct: 211 EEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEE 253
Score = 34.1 bits (79), Expect = 0.042
Identities = 8/54 (14%), Positives = 38/54 (70%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D L+ + + + K + +++++ +++++Q+Q+ Q+ +++Q ++++++ Q+++
Sbjct: 202 DELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERA 255
Score = 33.3 bits (77), Expect = 0.075
Identities = 6/45 (13%), Positives = 31/45 (68%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+EQ + K ++ Q+++ +++ ++++ ++Q + ++ +Q+ ++++
Sbjct: 239 REEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRR 283
Score = 33.0 bits (76), Expect = 0.12
Identities = 6/43 (13%), Positives = 33/43 (76%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + + +++++++ + Q+Q +++++++Q++ +++ Q+++Q
Sbjct: 58 EEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100
Score = 31.8 bits (73), Expect = 0.22
Identities = 5/44 (11%), Positives = 33/44 (75%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + + ++++++++ + Q+Q +++++++Q++ +++ Q+++
Sbjct: 56 AEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQERE 99
Score = 31.8 bits (73), Expect = 0.25
Identities = 5/43 (11%), Positives = 31/43 (72%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ K ++Q+ +++Q ++++++ Q+++ +++ ++++ ++Q +
Sbjct: 229 RRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAED 271
Score = 31.4 bits (72), Expect = 0.28
Identities = 6/42 (14%), Positives = 32/42 (76%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+E+ + + +++++ + Q+Q +++++++Q++ +++ Q+++Q
Sbjct: 59 EERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100
Score = 31.4 bits (72), Expect = 0.29
Identities = 3/42 (7%), Positives = 30/42 (71%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I+ + + + Q+++++Q++ +++ + +++ ++++++++
Sbjct: 105 IERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKE 146
Score = 31.4 bits (72), Expect = 0.36
Identities = 7/43 (16%), Positives = 30/43 (69%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + + Q+Q +++++++Q++ +++ Q+++Q + ++ Q+
Sbjct: 68 ERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQE 110
Score = 30.6 bits (70), Expect = 0.54
Identities = 4/44 (9%), Positives = 31/44 (70%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
DE + + + +++++++++++++++ + Q+Q +++++++
Sbjct: 44 DEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRR 87
Score = 30.6 bits (70), Expect = 0.63
Identities = 4/43 (9%), Positives = 32/43 (74%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + +++++++++++++++ + Q+Q +++++++Q++
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEY 91
Score = 30.6 bits (70), Expect = 0.64
Identities = 5/41 (12%), Positives = 28/41 (68%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + + + Q+Q +++++++Q++ +++ Q+++Q + ++
Sbjct: 67 EERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIER 107
Score = 30.6 bits (70), Expect = 0.65
Identities = 7/41 (17%), Positives = 33/41 (80%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E+A+ + +Q+Q+ Q+ +++Q ++++++ Q+++ +++ ++++
Sbjct: 223 EEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERER 263
Score = 30.6 bits (70), Expect = 0.66
Identities = 4/45 (8%), Positives = 32/45 (71%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + + +Q+ Q+ +++Q ++++++ Q+++ +++ ++++ ++
Sbjct: 223 EEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEK 267
Score = 30.3 bits (69), Expect = 0.72
Identities = 6/43 (13%), Positives = 33/43 (76%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+++ K ++Q+Q+ Q+ +++Q ++++++ Q+++ +++ ++++
Sbjct: 221 EKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERER 263
Score = 29.9 bits (68), Expect = 1.1
Identities = 6/43 (13%), Positives = 30/43 (69%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + + +++ + Q+Q +++++++Q++ +++ Q+++Q +
Sbjct: 62 ERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEI 104
Score = 29.5 bits (67), Expect = 1.2
Identities = 5/43 (11%), Positives = 34/43 (79%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ ++K +++++++++++++++ + Q+Q +++++++Q++
Sbjct: 48 EEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEE 90
Score = 29.1 bits (66), Expect = 1.7
Identities = 7/45 (15%), Positives = 31/45 (68%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + K K ++++ + Q+Q +++++++Q++ +++ Q+++Q +
Sbjct: 59 EERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDE 103
Score = 29.1 bits (66), Expect = 1.8
Identities = 7/42 (16%), Positives = 30/42 (71%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +I+ +++++Q++ +++ Q+++Q + ++ Q++ + + Q+
Sbjct: 77 QEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQE 118
Score = 29.1 bits (66), Expect = 1.8
Identities = 2/44 (4%), Positives = 31/44 (70%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+++ + ++ + ++++ + +++++++++++++++ + Q+Q
Sbjct: 36 EKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQ 79
Score = 29.1 bits (66), Expect = 2.0
Identities = 5/45 (11%), Positives = 33/45 (73%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N E+ ++K + +++ +QQ +++++++ +++++ ++ ++ ++++
Sbjct: 278 NAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEE 322
Score = 28.7 bits (65), Expect = 2.2
Identities = 2/42 (4%), Positives = 29/42 (69%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +++++++ ++++++++++++ + + QQ++ + +
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDE 197
Score = 28.7 bits (65), Expect = 2.5
Identities = 5/50 (10%), Positives = 33/50 (66%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+D + +I DE + +++Q++ +++ + +++ ++++++++++++
Sbjct: 101 MDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKERERE 150
Score = 28.3 bits (64), Expect = 3.0
Identities = 6/40 (15%), Positives = 27/40 (67%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+E + +M ++Q + ++ +Q+ ++++ ++ + +++ +QQ
Sbjct: 257 EEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQ 296
Score = 28.3 bits (64), Expect = 3.3
Identities = 5/43 (11%), Positives = 29/43 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + + + + Q+Q +++++++Q++ +++ Q+++Q + +
Sbjct: 64 KRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIE 106
Score = 28.3 bits (64), Expect = 3.3
Identities = 8/51 (15%), Positives = 36/51 (70%), Gaps = 8/51 (15%)
Query: 183 EQAKIKMQQQQQQQQQQQQ--------QQQQQQQQQQQQQQQQQQQQQQQQ 225
E A+++ QQ++ + ++++ Q++ +++++Q+++++ +++++Q+Q
Sbjct: 183 EVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQ 233
Score = 27.6 bits (62), Expect = 5.6
Identities = 2/39 (5%), Positives = 31/39 (79%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++A+ + ++++Q++ +++ + +++ ++++++++++++
Sbjct: 112 DEAEAQEKREKQKKLREEIDEFNEERIERKEEEKERERE 150
Score = 27.6 bits (62), Expect = 5.8
Identities = 2/38 (5%), Positives = 30/38 (78%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + Q+++++Q++ +++ + +++ ++++++++++++
Sbjct: 113 EAEAQEKREKQKKLREEIDEFNEERIERKEEEKERERE 150
Score = 27.6 bits (62), Expect = 6.2
Identities = 3/41 (7%), Positives = 31/41 (75%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ K +++++++ ++++++++++++ + + QQ++ + +++
Sbjct: 159 QREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDERE 199
Score = 27.6 bits (62), Expect = 6.2
Identities = 4/44 (9%), Positives = 35/44 (79%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
N+E+ + K ++++++++++ + + Q+++ +++++++ ++++++
Sbjct: 134 NEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
Score = 27.2 bits (61), Expect = 8.2
Identities = 2/44 (4%), Positives = 31/44 (70%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +++ +++++++ ++++++++++++ + + QQ++ +
Sbjct: 152 ELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195
Score = 27.2 bits (61), Expect = 8.7
Identities = 2/43 (4%), Positives = 29/43 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ +++ + +++++++++++++++ + Q+Q ++++
Sbjct: 42 RIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEERE 84
Score = 26.8 bits (60), Expect = 9.1
Identities = 3/49 (6%), Positives = 31/49 (63%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + E +++ + ++++ ++ + +++ +QQ +++++++ ++++
Sbjct: 262 ERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREE 310
>gnl|CDD|184118 PRK13531, PRK13531, regulatory ATPase RavA; Provisional.
Length = 498
Score = 34.6 bits (80), Expect = 0.030
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+QQQ +Q + QQQ + Q++ Q QQQQS
Sbjct: 294 LQQQLEQLMTEHAWQQQGMLTRLGAIVQRRLQLQQQQS 331
Score = 34.6 bits (80), Expect = 0.035
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+Q + M + QQQ + Q++ Q QQQQ +
Sbjct: 295 QQQLEQLMTEHAWQQQGMLTRLGAIVQRRLQLQQQQSDKT 334
>gnl|CDD|204784 pfam11932, DUF3450, Protein of unknown function (DUF3450). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are about 260 amino acids in
length.
Length = 250
Score = 34.5 bits (80), Expect = 0.030
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +I +Q + + + +Q ++ + + Q Q+ QQQ+ QQ
Sbjct: 42 QKKIDKWADQTQELLAEIRQLLKEIENLRVYNDQLQRLVANQQQEIASLQQQ 93
Score = 31.8 bits (73), Expect = 0.21
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQ 224
Q Q++ K+ + Q Q+ + +Q ++ Q Q+ QQQ
Sbjct: 26 QALAAAQQTVAAAAQSQKKIDKWADQTQELLAEIRQLLKEIENLRVYNDQLQRLVANQQQ 85
Query: 225 Q 225
+
Sbjct: 86 E 86
Score = 27.2 bits (61), Expect = 6.4
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
L +I N ++ Q Q+ QQQ+ QQQ +Q ++ +Q
Sbjct: 60 RQLLKEIEN--------LRVYNDQLQRLVANQQQEIASLQQQIEQIEKTRQG 103
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication,
recombination, and repair].
Length = 440
Score = 34.5 bits (80), Expect = 0.031
Identities = 11/57 (19%), Positives = 29/57 (50%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q ++ + + ++ Q ++Q+ ++ Q+ Q Q+QQQ+ QQ +++
Sbjct: 307 LLSEQQQRLDELAIRLRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLD 363
Score = 34.2 bits (79), Expect = 0.051
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L Q DE A + + Q ++Q+ ++ Q+ Q Q+QQQ+ QQ +
Sbjct: 306 RLLSEQQQRLDELAIRLRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLE 359
Score = 31.1 bits (71), Expect = 0.47
Identities = 10/56 (17%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
P+ L Q+ + Q ++ ++ Q++Q+ + ++ Q + ++ +QQQ+
Sbjct: 261 PDSAELLQQL--DQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQR 314
Score = 30.7 bits (70), Expect = 0.53
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L+ + N +Q+ ++ Q+ Q Q+QQQ+ QQ +++ + ++Q
Sbjct: 321 RLRRALENQLAL----KKQRLERLTQRLNPQIQRQQQRLQQLERRLDKALRRQ 369
Score = 30.7 bits (70), Expect = 0.57
Identities = 11/55 (20%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+D L ++ + ++ +++Q+ ++ Q+ Q Q+QQQ+ QQ +++ + ++
Sbjct: 315 LDELAIRLRRA-LENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKALRR 368
Score = 30.3 bits (69), Expect = 0.83
Identities = 9/52 (17%), Positives = 26/52 (50%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + +S ++ + ++ + Q ++Q+ ++ Q+ Q Q+QQQ+
Sbjct: 303 SPERLLSEQQQRLDELAIRLRRALENQLALKKQRLERLTQRLNPQIQRQQQR 354
Score = 29.9 bits (68), Expect = 1.2
Identities = 7/56 (12%), Positives = 26/56 (46%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++L ++ + + QQQ+ + + ++ + Q ++Q+ ++ Q+
Sbjct: 292 LEHLARRLQFRSPERLLSEQQQRLDELAIRLRRALENQLALKKQRLERLTQRLNPQ 347
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++Q+ ++ Q+ Q Q+QQQ+ QQ +++ + +
Sbjct: 332 LKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKALRR 368
>gnl|CDD|234683 PRK00191, tatA, twin arginine translocase protein A; Provisional.
Length = 84
Score = 32.6 bits (74), Expect = 0.033
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q +QQQQQ QQQ Q + Q QQ Q QQ
Sbjct: 50 QTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
Score = 32.6 bits (74), Expect = 0.033
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q +QQQQQ QQQ Q + Q QQ Q QQ
Sbjct: 50 QTPEQQQQQPQQQIAPNQIEAPQPNFQQHYQGQQ 83
>gnl|CDD|221016 pfam11180, DUF2968, Protein of unknown function (DUF2968). This
family of proteins has no known function.
Length = 192
Score = 33.9 bits (78), Expect = 0.033
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L+ QI+ ++ +A+ ++Q Q Q Q+QQ +QQQ +Q+ + Q+Q Q+
Sbjct: 117 LERQIAASEARAE-RLQADLQLAQAQEQQVAARQQQARQEAVALEAQRQAAQA 168
Score = 31.6 bits (72), Expect = 0.20
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ Q + ++ + + ++ Q Q Q Q+QQ +QQQ +Q+ +
Sbjct: 108 AQLEAQKAQLERQIAASEARAERLQADLQLAQAQEQQVAARQQQARQEAVA 158
Score = 31.2 bits (71), Expect = 0.30
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
QA +++ Q Q+QQ +QQQ +Q+ + Q+Q Q Q
Sbjct: 132 QADLQLAQAQEQQVAARQQQARQEAVALEAQRQAAQAQ 169
Score = 28.2 bits (63), Expect = 2.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ ++ +QQQ +Q+ + Q+Q Q Q ++ Q+Q +Q Q Q
Sbjct: 141 QEQQVAARQQQARQEAVALEAQRQAAQAQLRKLQRQIRQLQAQQ 184
Score = 27.0 bits (60), Expect = 7.7
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QT + E + +++ Q+ Q ++Q + + ++ Q Q Q Q+QQ +
Sbjct: 96 QTAQLADVEIRRAQLEAQKAQLERQIAASEARAERLQADLQLAQAQEQQVAA 147
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 34.8 bits (80), Expect = 0.033
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 270 LTQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 34.4 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 34.4 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 34.4 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 34.4 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 34.4 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQ+Q QQQQQ+ QQ Q QQ QQ +
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQSQQTSGRW 300
Score = 30.2 bits (68), Expect = 0.85
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 204 QQQQQQQQQQQQQQQQQQQQQQS 226
QQQ+Q QQQQQ+ QQ Q QQS
Sbjct: 271 TQQQEQAQQQQQRLYQQVQYQQS 293
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 34.4 bits (80), Expect = 0.044
Identities = 5/45 (11%), Positives = 33/45 (73%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + ++ ++++ ++++++ +Q+QQ+ ++++++ ++ ++Q Q+
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 33.6 bits (78), Expect = 0.064
Identities = 6/47 (12%), Positives = 31/47 (65%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ E + + ++ ++++++ +Q+QQ+ ++++++ ++ ++Q Q+
Sbjct: 97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 29.7 bits (68), Expect = 1.2
Identities = 8/59 (13%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ----QQQQQQ 225
+ L+ ++ +E K++ ++++++ ++++++ +Q+QQ+ ++++++ ++Q Q
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Score = 29.4 bits (67), Expect = 1.8
Identities = 6/66 (9%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQ----------QQQQQQQQQQQQQQQQQQ 220
+ L+ + + + ++Q+ +++ Q+++ ++++ ++++++ +Q+QQ+
Sbjct: 66 IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125
Query: 221 QQQQQS 226
++++
Sbjct: 126 LEKKEE 131
Score = 28.6 bits (65), Expect = 2.9
Identities = 5/53 (9%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ---------QQQQQQQQQQQQS 226
E+AK + + +++ + +++ + + + ++ Q+ +++ Q++++
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEEN 97
Score = 28.2 bits (64), Expect = 3.9
Identities = 9/47 (19%), Positives = 30/47 (63%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
N+D + +E+ + K ++ +Q+QQ+ ++++++ ++ ++Q Q+
Sbjct: 97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 34.3 bits (79), Expect = 0.048
Identities = 8/61 (13%), Positives = 33/61 (54%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E+++ + L +IS ++Q +I ++ ++Q ++ + Q ++ + + + ++ + +
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
Query: 225 Q 225
+
Sbjct: 344 E 344
Score = 31.2 bits (71), Expect = 0.52
Identities = 6/57 (10%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 171 VDNLQTQISN-NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ L+ Q+ + A+++ Q + ++ + + ++ + ++++ QQ+ ++ +
Sbjct: 374 LEELEEQLETLRSKVAQLE-LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
Score = 30.4 bits (69), Expect = 0.86
Identities = 7/61 (11%), Positives = 31/61 (50%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E ++ ++ L QIS + + +Q +++ Q ++ + + + ++ +++ ++ +
Sbjct: 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
Query: 225 Q 225
+
Sbjct: 775 E 775
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/64 (10%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 171 VDNLQTQISNNDEQ------AKIKMQQQQQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQ 221
++ L ++ +E+ +++++ ++ Q++ + QQ+Q +++
Sbjct: 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
Query: 222 QQQQ 225
++Q
Sbjct: 315 ERQL 318
Score = 28.5 bits (64), Expect = 4.0
Identities = 3/53 (5%), Positives = 28/53 (52%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ L +++ + + + ++ ++ +++ + + + ++ + Q +Q +++ +
Sbjct: 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
Score = 27.3 bits (61), Expect = 7.7
Identities = 4/54 (7%), Positives = 25/54 (46%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ L+ ++ ++ + +Q ++ + + + +Q +++ Q ++ + +
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
>gnl|CDD|218731 pfam05752, Calici_MSP, Calicivirus minor structural protein. This
family consists of minor structural proteins largely
from human calicivirus isolates. Human calicivirus
causes gastroenteritis. The function of this family is
unknown.
Length = 167
Score = 33.1 bits (76), Expect = 0.051
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ+Q Q +Q Q QQ +Q+ Q++ Q S
Sbjct: 27 QQRQLAQLAKQNQLQQDWMNKQEALQRRGQDLS 59
Score = 33.1 bits (76), Expect = 0.057
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
I QQ+Q Q +Q Q QQ +Q+ Q++ Q
Sbjct: 24 IVAQQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
Score = 32.8 bits (75), Expect = 0.073
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
QQ+Q Q +Q Q QQ +Q+ Q++ Q
Sbjct: 27 QQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
Score = 32.8 bits (75), Expect = 0.073
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
QQ+Q Q +Q Q QQ +Q+ Q++ Q
Sbjct: 27 QQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
Score = 32.8 bits (75), Expect = 0.073
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
QQ+Q Q +Q Q QQ +Q+ Q++ Q
Sbjct: 27 QQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
Score = 28.1 bits (63), Expect = 2.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
+Q ++ +Q Q QQ +Q+ Q++ Q
Sbjct: 27 QQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
Score = 27.0 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
ISN Q + Q +Q Q QQ +Q+ Q++ Q
Sbjct: 21 ISNIVAQQRQLAQLAKQNQLQQDWMNKQEALQRRGQD 57
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 33.9 bits (79), Expect = 0.053
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 164 PEDIKPNV----DNLQTQISNND-EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
P D K + L+ + D E K K ++ Q Q+ + QQ Q Q
Sbjct: 551 PADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAA 610
Query: 219 Q 219
+
Sbjct: 611 K 611
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 34.1 bits (79), Expect = 0.058
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D++ +D L Q E ++ +Q + +Q+++ +Q +QQ Q + +
Sbjct: 38 EADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLR 97
Query: 224 Q 224
Q
Sbjct: 98 Q 98
Score = 32.2 bits (74), Expect = 0.23
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 25/94 (26%)
Query: 157 LISHQCGPEDIKPNVDNLQTQI--------SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQ 208
L+S Q PE + + ++ ++ Q+ Q +Q Q
Sbjct: 151 LVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDL 210
Query: 209 QQQ------------QQQQ-----QQQQQQQQQQ 225
Q++ Q+Q+ + Q+ + Q Q
Sbjct: 211 QRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQ 244
Score = 31.8 bits (73), Expect = 0.35
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ + Q Q Q+ ++ ++ Q+ Q Q ++
Sbjct: 235 RIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEA 271
Score = 31.0 bits (71), Expect = 0.61
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 188 KMQQQQQQQQQQQ-------QQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ + Q Q ++ ++ Q+ Q Q + + Q +
Sbjct: 232 LTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQAN 277
Score = 28.7 bits (65), Expect = 2.7
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 165 EDIKPNVDNLQTQISNNDEQ-AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E +K + ++ + +K ++ ++ +Q + + Q Q Q Q
Sbjct: 83 EQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQN 142
Query: 224 Q 224
Sbjct: 143 D 143
Score = 28.7 bits (65), Expect = 3.2
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 30/76 (39%)
Query: 181 NDEQAKIKMQQQQQQQ------------QQQ------QQQQQQQQQQ------------Q 210
EQA + Q Q++ Q+Q + Q+ + Q Q
Sbjct: 198 QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTL 257
Query: 211 QQQQQQQQQQQQQQQS 226
++ Q+ Q Q +
Sbjct: 258 SEKTVQEAQSQDEAAR 273
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 33.6 bits (77), Expect = 0.064
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
V + TQ N + Q+ QQ QQ+ Q QQQ Q+ + Q QQ
Sbjct: 121 PVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQ 178
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+D Q + Q + Q QQQ Q+ + Q QQQ + QQ +
Sbjct: 135 SPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGA 192
Score = 28.2 bits (63), Expect = 3.6
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q Q Q QQQ +
Sbjct: 54 QAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPT 90
Score = 28.2 bits (63), Expect = 3.8
Identities = 9/36 (25%), Positives = 9/36 (25%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q Q Q Q Q QQQ
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNT 88
Score = 28.2 bits (63), Expect = 3.8
Identities = 8/37 (21%), Positives = 8/37 (21%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q Q QQQ
Sbjct: 57 PPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSP 93
Score = 27.8 bits (62), Expect = 4.5
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q Q Q QQQ +
Sbjct: 52 SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNT 88
Score = 27.8 bits (62), Expect = 4.9
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q Q Q QQQ +
Sbjct: 51 PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHN 87
Score = 27.8 bits (62), Expect = 5.2
Identities = 9/45 (20%), Positives = 11/45 (24%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
D + Q Q Q Q Q QQQ +
Sbjct: 50 DPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPA 94
Score = 27.4 bits (61), Expect = 7.4
Identities = 8/49 (16%), Positives = 10/49 (20%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + Q Q Q Q Q QQQ
Sbjct: 49 WDPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANP 97
>gnl|CDD|203138 pfam04977, DivIC, Septum formation initiator. DivIC from B.
subtilis is necessary for both vegetative and
sporulation septum formation. These proteins are mainly
composed of an amino terminal coiled-coil.
Length = 80
Score = 31.4 bits (72), Expect = 0.073
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q Q+ Q + + + + ++ + +
Sbjct: 12 GVNGLSAYYQLNQEIAALQAELAKLKAENEELEAE 46
Score = 30.2 bits (69), Expect = 0.17
Identities = 4/37 (10%), Positives = 13/37 (35%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
I Q Q+ Q + + + + ++ + +
Sbjct: 10 IFGVNGLSAYYQLNQEIAALQAELAKLKAENEELEAE 46
Score = 29.9 bits (68), Expect = 0.27
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q+ Q + + + + ++ + +
Sbjct: 14 NGLSAYYQLNQEIAALQAELAKLKAENEELEAE 46
Score = 29.9 bits (68), Expect = 0.27
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q+ Q + + + + ++ + +
Sbjct: 14 NGLSAYYQLNQEIAALQAELAKLKAENEELEAE 46
Score = 28.3 bits (64), Expect = 0.91
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q+ Q + + + + ++ ++
Sbjct: 14 NGLSAYYQLNQEIAALQAELAKLKAENEELEA 45
Score = 26.4 bits (59), Expect = 3.5
Identities = 2/31 (6%), Positives = 12/31 (38%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+ Q+ Q + + + + ++ + +
Sbjct: 16 LSAYYQLNQEIAALQAELAKLKAENEELEAE 46
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 33.4 bits (77), Expect = 0.073
Identities = 9/52 (17%), Positives = 31/52 (59%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQT + ++ I+ ++ + + + +Q+ +++Q++++Q + Q++ Q+
Sbjct: 193 LQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEH 244
Score = 30.7 bits (70), Expect = 0.46
Identities = 5/46 (10%), Positives = 25/46 (54%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + + +++Q + Q++ Q+ +Q ++ + ++++ +Q+
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQER 265
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 33.4 bits (77), Expect = 0.078
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + QQ++Q Q Q + + + Q +
Sbjct: 113 VLLEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAE 150
Score = 33.0 bits (76), Expect = 0.11
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +I+ ++Q Q Q + + + Q + + Q+
Sbjct: 111 DTVLLEIQQEEQAAAQAQVAAGFRPKIAALTAEIAALQAEIDEAQA 156
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 32.6 bits (75), Expect = 0.082
Identities = 7/43 (16%), Positives = 24/43 (55%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D ++K ++ + ++ ++ ++ +Q+Q + +Q+ Q +Q
Sbjct: 37 DGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQ 79
Score = 32.6 bits (75), Expect = 0.091
Identities = 4/38 (10%), Positives = 23/38 (60%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K ++ ++++++Q++Q ++ + +Q ++ + ++
Sbjct: 16 KAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEK 53
Score = 32.2 bits (74), Expect = 0.11
Identities = 5/40 (12%), Positives = 23/40 (57%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K K ++++Q++Q ++ + +Q ++ + ++ ++ +
Sbjct: 19 KAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDR 58
Score = 32.2 bits (74), Expect = 0.11
Identities = 6/42 (14%), Positives = 23/42 (54%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QA+ + +Q ++ + ++ ++ ++ +Q+Q + +Q+
Sbjct: 30 QARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 32.2 bits (74), Expect = 0.12
Identities = 5/44 (11%), Positives = 21/44 (47%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ K + +Q ++ + ++ ++ ++ +Q+Q + +Q
Sbjct: 27 QRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQ 70
Score = 31.8 bits (73), Expect = 0.14
Identities = 7/42 (16%), Positives = 24/42 (57%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
D++ K ++ + ++ ++ ++ +Q+Q + +Q+ Q +Q
Sbjct: 38 GDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQ 79
Score = 31.0 bits (71), Expect = 0.29
Identities = 5/36 (13%), Positives = 21/36 (58%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +Q ++ + ++ ++ ++ +Q+Q + +Q+ Q
Sbjct: 41 ELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQ 76
Score = 29.9 bits (68), Expect = 0.71
Identities = 4/36 (11%), Positives = 20/36 (55%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +Q ++ + ++ ++ ++ +Q+Q + +Q+
Sbjct: 39 DDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIV 74
Score = 29.9 bits (68), Expect = 0.71
Identities = 6/36 (16%), Positives = 21/36 (58%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++ + ++ ++ ++ +Q+Q + +Q+ Q +Q
Sbjct: 44 QAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQIKQ 79
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.4 bits (77), Expect = 0.088
Identities = 3/47 (6%), Positives = 25/47 (53%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ E K + ++++++ +++ +++++ ++ +Q+++
Sbjct: 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 33.0 bits (76), Expect = 0.11
Identities = 3/48 (6%), Positives = 29/48 (60%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ L ++ + D++ + +++++ +++ +++++ ++ +Q+++
Sbjct: 90 ETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 31.0 bits (71), Expect = 0.51
Identities = 2/44 (4%), Positives = 27/44 (61%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D + + ++++ ++++++ +++ +++++ ++ +Q++
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQRE 136
Score = 30.3 bits (69), Expect = 0.81
Identities = 5/73 (6%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQ---------------QQQQQQQQQQ 212
K V L+ ++ ++ + ++Q+ +++ Q+++ ++++++ +
Sbjct: 57 KEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116
Query: 213 QQQQQQQQQQQQQ 225
++ +++++ ++
Sbjct: 117 EKNLDEKEEELEE 129
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 33.1 bits (75), Expect = 0.089
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 56 QSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQI 113
+ + PRP C C SF+ ++L H H+G +P +C+ CDKSF +
Sbjct: 18 STPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPL 77
Query: 114 NPTSTHTPTYTKSN--LAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNV 171
+ + + ++ +++ S D L SH P P +
Sbjct: 78 ELSRHLRTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQL 137
Query: 172 DNLQT 176
+L +
Sbjct: 138 PDLLS 142
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 33.5 bits (77), Expect = 0.095
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+QA++ +Q+ Q +QQ + + + +++QQ + Q +Q Q
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQL 694
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ N + K K++ +++QQ + Q +Q Q +Q +QQQ +
Sbjct: 653 QARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEAL 708
Score = 29.7 bits (67), Expect = 1.4
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+A+ ++Q + Q+ Q +QQ + + + +++QQ + Q
Sbjct: 645 AEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ 686
Score = 28.5 bits (64), Expect = 3.6
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ NN+ A I+ ++ +Q+ ++ Q + Q +QQ + + + +++
Sbjct: 391 EQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEY 445
Score = 27.7 bits (62), Expect = 6.3
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q + Q+ Q +QQ + + + +++QQ +
Sbjct: 652 KQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQ 686
>gnl|CDD|225686 COG3144, FliK, Flagellar hook-length control protein [Cell motility
and secretion].
Length = 417
Score = 33.2 bits (76), Expect = 0.10
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ ++ + Q Q QQQQ QQ Q + QQ+ Q
Sbjct: 353 QGIQLGQVNVSVQSFQGQQQQLSNQQNSGQSTNGNRLQQEDDQ 395
Score = 32.1 bits (73), Expect = 0.19
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQQ QQ Q + QQ+ Q+
Sbjct: 363 SVQSFQGQQQQLSNQQNSGQSTNGNRLQQEDDQA 396
Score = 32.1 bits (73), Expect = 0.20
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
E A +++Q +Q Q Q Q Q QQQQ QQ QS
Sbjct: 340 ESAMPRLRQALAEQGIQLGQVNVSVQSFQGQQQQLSNQQNSGQS 383
Score = 31.7 bits (72), Expect = 0.32
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q QQQQ QQ Q + QQ+ Q
Sbjct: 363 SVQSFQGQQQQLSNQQNSGQSTNGNRLQQEDDQ 395
Score = 31.7 bits (72), Expect = 0.32
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q QQQQ QQ Q + QQ+ Q
Sbjct: 363 SVQSFQGQQQQLSNQQNSGQSTNGNRLQQEDDQ 395
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 33.1 bits (76), Expect = 0.10
Identities = 6/40 (15%), Positives = 26/40 (65%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
N + K K + Q+ +++++++ +++ ++++Q +++ Q
Sbjct: 269 INKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Score = 29.3 bits (66), Expect = 1.7
Identities = 5/47 (10%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQQQ 222
++ K K +++ +++ ++++Q +++ Q ++ Q+++ + +
Sbjct: 282 QRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARAR 328
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 33.4 bits (77), Expect = 0.11
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ + K++Q+ +Q +Q++ + ++Q +Q Q Q Q Q +S
Sbjct: 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKS 1027
Score = 33.4 bits (77), Expect = 0.11
Identities = 5/47 (10%), Positives = 24/47 (51%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + + +++Q Q++ + + + + + ++++ +QQ +Q
Sbjct: 544 KRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 33.0 bits (76), Expect = 0.15
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +Q QQ + + + +Q+ +QQQ+ ++ + ++ ++
Sbjct: 506 REQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKN 549
Score = 32.6 bits (75), Expect = 0.15
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 183 EQAKIKMQQQQQQQQQ--------QQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+AK +QQ Q Q +Q +Q +Q QQ QQ Q+ +QQ
Sbjct: 907 EEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQ 957
Score = 32.6 bits (75), Expect = 0.19
Identities = 8/52 (15%), Positives = 27/52 (51%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L + + DE +++ + + + + + + ++++ +QQ +Q Q + Q+
Sbjct: 546 LGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
Score = 31.9 bits (73), Expect = 0.30
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ E ++ +++ + ++ + Q+QQQ+ Q +Q ++
Sbjct: 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSA 876
Score = 31.1 bits (71), Expect = 0.49
Identities = 9/42 (21%), Positives = 27/42 (64%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ A+ +++ ++Q+ +Q QQ + + + +Q+ +QQQ+ ++
Sbjct: 496 DVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER 537
Score = 30.3 bits (69), Expect = 0.82
Identities = 8/43 (18%), Positives = 24/43 (55%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D +A+++ +++ + ++ + Q+QQQ+ Q +Q ++
Sbjct: 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSA 876
Score = 29.9 bits (68), Expect = 1.1
Identities = 7/45 (15%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQQS 226
++Q+ +QQQ+ ++ + ++ + +Q Q++ + + +S
Sbjct: 525 LEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLES 569
Score = 29.2 bits (66), Expect = 2.0
Identities = 6/49 (12%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQ 225
+ ++ +Q+ +QQQ+ ++ + ++ + +Q Q++ + +
Sbjct: 519 RMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARL 567
Score = 29.2 bits (66), Expect = 2.4
Identities = 6/43 (13%), Positives = 22/43 (51%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ +A+++ + + ++++ +QQ +Q Q + Q+ +
Sbjct: 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPA 604
Score = 28.4 bits (64), Expect = 3.6
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++L +S E+ M +QQ +Q Q + Q+ + Q + ++QS
Sbjct: 567 LESLSESVSEARERR---MALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
Score = 28.4 bits (64), Expect = 4.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N+D K++ Q+ +Q +Q++ + ++Q +Q Q Q Q Q + S
Sbjct: 983 NSDLNEKLR-QRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSS 1028
Score = 28.0 bits (63), Expect = 4.5
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q +++ + ++ + Q+QQQ+ Q +Q ++ S
Sbjct: 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
Score = 28.0 bits (63), Expect = 4.8
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ + S+ +E+ + +++Q +Q++ + ++Q +Q Q Q Q Q
Sbjct: 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLAS 1024
Score = 28.0 bits (63), Expect = 5.4
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + ++++ +QQ +Q Q + Q+ +
Sbjct: 566 RLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLA 607
Score = 27.6 bits (62), Expect = 6.4
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ A++ + ++ +Q+ +Q +Q++ + ++Q +Q Q Q Q
Sbjct: 975 DAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQ 1017
Score = 27.6 bits (62), Expect = 7.2
Identities = 6/48 (12%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQ 225
+ K + + +Q Q++ + + + + ++++ +QQ +Q
Sbjct: 543 CKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 27.2 bits (61), Expect = 8.6
Identities = 6/43 (13%), Positives = 22/43 (51%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + +++ + + ++++ +QQ +Q Q + Q+ +
Sbjct: 561 EELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAP 603
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.1 bits (76), Expect = 0.11
Identities = 3/37 (8%), Positives = 30/37 (81%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+++++++ ++Q++ ++ ++Q+++++++ ++ +++
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 33.1 bits (76), Expect = 0.11
Identities = 3/41 (7%), Positives = 33/41 (80%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
D++ +++ ++++++ ++Q++ ++ ++Q+++++++ ++ ++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.1 bits (76), Expect = 0.13
Identities = 7/59 (11%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 173 NLQTQISNNDEQAKI-----KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
NL +I + + + K + Q+++++++ ++Q++ ++ ++Q+++++++ ++ +
Sbjct: 530 NLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|234016 TIGR02791, VirB5, P-type DNA transfer protein VirB5. The VirB5
protein is involved in the type IV DNA secretion systems
typified by the Agrobacterium Ti plasmid vir system
where it interacts with several other proteins essential
for proper pilus formation. VirB5 is homologous to the
IncN (N-type) conjugation system protein TraC as well as
the P-type protein TrbJ and the F-type protein TraE.
Length = 220
Score = 32.6 bits (74), Expect = 0.12
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 170 NVDNLQTQISN-NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N++ L+ +I+ D +A +Q + Q +Q Q +Q + Q Q Q+ Q + Q Q++
Sbjct: 162 NIEQLRQKINEAGDPKAIADLQARIQVEQAMIQNEQTRLQNLQMLQEAQDKLQNQRR 218
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 32.5 bits (74), Expect = 0.13
Identities = 4/34 (11%), Positives = 6/34 (17%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
MQ Q + +Q
Sbjct: 1 MQLFDAMPPYLTLQAPLSLIIFHKMVFMSGIRQL 34
Score = 30.2 bits (68), Expect = 0.60
Identities = 3/33 (9%), Positives = 5/33 (15%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q + +Q
Sbjct: 2 QLFDAMPPYLTLQAPLSLIIFHKMVFMSGIRQL 34
Score = 30.2 bits (68), Expect = 0.60
Identities = 3/33 (9%), Positives = 5/33 (15%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q + +Q
Sbjct: 2 QLFDAMPPYLTLQAPLSLIIFHKMVFMSGIRQL 34
Score = 30.2 bits (68), Expect = 0.60
Identities = 3/33 (9%), Positives = 5/33 (15%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + +Q
Sbjct: 2 QLFDAMPPYLTLQAPLSLIIFHKMVFMSGIRQL 34
Score = 30.2 bits (68), Expect = 0.67
Identities = 5/41 (12%), Positives = 10/41 (24%), Gaps = 4/41 (9%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQ----QQQQQQQQQ 225
M Q + +Q + ++ QQ
Sbjct: 7 MPPYLTLQAPLSLIIFHKMVFMSGIRQLHTTLVELEKPLQQ 47
Score = 28.3 bits (63), Expect = 2.7
Identities = 2/34 (5%), Positives = 7/34 (20%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+++ Q + +Q
Sbjct: 1 MQLFDAMPPYLTLQAPLSLIIFHKMVFMSGIRQL 34
Score = 28.3 bits (63), Expect = 3.1
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ +Q + +Q + ++ QQ
Sbjct: 8 PPYLTLQAPLSLIIFHKMVFMSGIRQLHTTLVELEKPLQQ 47
Score = 27.9 bits (62), Expect = 4.0
Identities = 2/36 (5%), Positives = 6/36 (16%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + +Q + +
Sbjct: 8 PPYLTLQAPLSLIIFHKMVFMSGIRQLHTTLVELEK 43
Score = 27.5 bits (61), Expect = 4.6
Identities = 2/29 (6%), Positives = 3/29 (10%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q +
Sbjct: 2 QLFDAMPPYLTLQAPLSLIIFHKMVFMSG 30
>gnl|CDD|217472 pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein.
Length = 189
Score = 32.2 bits (74), Expect = 0.13
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ +I +Q+ ++ Q + ++ ++ QQ+
Sbjct: 66 ERLRIAQDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQE 108
Score = 31.1 bits (71), Expect = 0.27
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ S +DEQ ++ Q + ++ ++ QQ+ Q Q Q Q S
Sbjct: 70 IAQDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQELAQATAQLQAQGAS 122
Score = 29.9 bits (68), Expect = 0.68
Identities = 4/42 (9%), Positives = 17/42 (40%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++++ Q +Q+ ++ Q + ++ ++ Q
Sbjct: 66 ERLRIAQDPSLSDEQKARRLAALIAQLPEDLREARRNAALQQ 107
Score = 28.0 bits (63), Expect = 3.1
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+A ++ Q Q++ QQ+ ++ Q +Q
Sbjct: 135 GPEAAQRLAQLDQERAAWQQRYDDYLAERDQILAAGLSDADKQA 178
Score = 27.2 bits (61), Expect = 5.1
Identities = 4/43 (9%), Positives = 17/43 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q ++ + Q +Q+ ++ Q + ++ ++ +
Sbjct: 62 QYALERLRIAQDPSLSDEQKARRLAALIAQLPEDLREARRNAA 104
>gnl|CDD|225507 COG2959, HemX, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 391
Score = 32.9 bits (75), Expect = 0.13
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q Q+ Q QQQ + Q Q+ Q+ Q +
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESL 91
Score = 32.1 bits (73), Expect = 0.20
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ +Q K Q+ Q+ Q + QQQ + + ++Q + Q+Q
Sbjct: 58 NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQ 112
Score = 31.3 bits (71), Expect = 0.33
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q + ++ + + Q + QQQ + + ++Q + Q+Q + Q++
Sbjct: 70 QQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKV 120
Score = 30.9 bits (70), Expect = 0.49
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q ++ I QQ + + ++Q + Q+Q + Q++ ++
Sbjct: 79 QENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGSDRKD 130
Score = 30.9 bits (70), Expect = 0.56
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q + + QQQ + + ++Q + Q+Q + Q++ S
Sbjct: 79 QENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124
Score = 30.5 bits (69), Expect = 0.73
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ E K+ Q + QQQ + + ++Q + Q+Q + Q++
Sbjct: 73 KALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVAT 122
Score = 30.2 bits (68), Expect = 0.81
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N + QQQ + + ++Q + Q+Q + Q++ S
Sbjct: 76 QLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGS 126
Score = 29.8 bits (67), Expect = 1.1
Identities = 8/50 (16%), Positives = 25/50 (50%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q++ +++ +++ QQQ + + ++Q + Q+Q + Q++
Sbjct: 74 ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATI 123
Score = 29.4 bits (66), Expect = 1.4
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + Q+ Q + QQQ + + ++Q + Q+Q + Q
Sbjct: 67 ALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQ 117
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 186 KIKMQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQQQQQQQQ 225
+ + Q Q+ Q QQQ Q Q+ Q+ Q + QQQ +
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAE 98
Score = 29.0 bits (65), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q+ Q QQQ + Q Q+ Q+ Q + QQQ+
Sbjct: 61 QTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQA 97
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q N + +++ QQQ + Q Q+ Q+ Q + QQQ + +
Sbjct: 55 QQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 32.7 bits (75), Expect = 0.13
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ----------QQQQQQQQ 223
L ++ + K ++QQQ Q ++Q Q + Q + Q ++ +
Sbjct: 67 LNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELN 126
Query: 224 QQS 226
QQ+
Sbjct: 127 QQN 129
Score = 31.2 bits (71), Expect = 0.38
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + ++ + + Q+ + + + QQQ Q ++Q Q + Q
Sbjct: 52 AEAEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQ 102
Score = 30.8 bits (70), Expect = 0.59
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + QA Q+ + + + QQQ Q ++Q Q + Q +
Sbjct: 54 AEQLRTFARSLQALNLELIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEF 107
>gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 262
Score = 32.4 bits (74), Expect = 0.14
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 171 VDNLQTQISNNDEQAKI-KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ L+ Q+ Q KI +++ Q+ Q Q Q ++Q++ + + + +Q Q
Sbjct: 58 LTQLEQQLRQL--QGKIEELRGIQELQYQNNQNVERQEENEARLDSLESGRQALAQ 111
Score = 27.4 bits (61), Expect = 5.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q +QQ +Q Q + ++ + Q+ Q Q Q ++Q
Sbjct: 56 YRLTQLEQQLRQLQGKIEELRGIQELQYQNNQNVERQ 92
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 32.8 bits (75), Expect = 0.14
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ + Q + Q Q + ++ + Q QQ + Q+ Q Q
Sbjct: 153 TSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQA 193
Score = 32.0 bits (73), Expect = 0.26
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ K + Q + ++ + Q QQ + Q+ Q Q +
Sbjct: 153 TSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196
Score = 31.6 bits (72), Expect = 0.30
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQ + Q Q + ++ + Q QQ + Q+ Q Q
Sbjct: 157 QQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQ 192
Score = 31.2 bits (71), Expect = 0.45
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ + Q Q + ++ + Q QQ + Q+ Q Q
Sbjct: 158 QQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQA 193
Score = 30.1 bits (68), Expect = 0.86
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + QQQ + Q Q + ++ + Q QQ + Q+
Sbjct: 152 LTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQ 189
Score = 28.9 bits (65), Expect = 2.1
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
++ S +Q Q + ++ + Q QQ + Q+ Q Q +
Sbjct: 150 ESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196
Score = 28.1 bits (63), Expect = 4.5
Identities = 8/54 (14%), Positives = 25/54 (46%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
V++L ++ +++++ + + ++ + Q QQ + Q+ Q Q +
Sbjct: 149 VESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202
Score = 27.0 bits (60), Expect = 8.6
Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 166 DIKPNVDNLQTQISNNDEQ-----------------AKIKMQQQQQQQQQQQQQQQQQQQ 208
I+ +D LQ I++ Q +K+ ++QQ + +Q+ Q+
Sbjct: 240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQK 299
Query: 209 QQQQQQQQQQQQQQQQQS 226
+ + + + ++ Q+
Sbjct: 300 LLELESKIKSLKEDSQKG 317
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 32.5 bits (74), Expect = 0.16
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ + Q + Q Q Q+ QQ Q S
Sbjct: 535 PADQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHS 571
Score = 32.5 bits (74), Expect = 0.18
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M+ QQ + Q + Q Q Q+ QQ Q
Sbjct: 533 MEPADQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQH 570
Score = 31.8 bits (72), Expect = 0.31
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D+Q++I Q + Q Q Q+ QQ Q Q + +
Sbjct: 537 DQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHSQDSEGEG 578
Score = 31.4 bits (71), Expect = 0.38
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ + Q + Q Q Q+ QQ Q Q
Sbjct: 537 DQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHSQD 573
Score = 31.0 bits (70), Expect = 0.52
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q+ QQ Q Q + + Q S
Sbjct: 547 AELSHSHAQPQGQRLSAQQISGQHSQDSEGEGWSSQSAS 585
Score = 31.0 bits (70), Expect = 0.57
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ + Q + Q Q Q+ QQ Q Q S
Sbjct: 538 QQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHSQDS 574
Score = 30.6 bits (69), Expect = 0.73
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q ++ QQ + Q + Q Q Q+ QQ Q
Sbjct: 530 QQLMEPADQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQH 570
Score = 30.2 bits (68), Expect = 1.1
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q Q Q+ QQ Q Q + + S
Sbjct: 546 QAELSHSHAQPQGQRLSAQQISGQHSQDSEGEGWS 580
Score = 28.7 bits (64), Expect = 3.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + QQ + Q + Q Q Q+ QQ S
Sbjct: 531 QLMEPADQQSEIGTLQAELSHSHAQPQGQRLSAQQIS 567
Score = 28.7 bits (64), Expect = 3.3
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQ + QQ + Q + Q Q Q+ QQ
Sbjct: 530 QQLMEPADQQSEIGTLQAELSHSHAQPQGQRLSAQQ 565
Score = 28.3 bits (63), Expect = 4.2
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+ + ++ Q Q Q+ QQ Q Q + +
Sbjct: 534 EPADQQSEIGTLQAELSHSHAQPQGQRLSAQQISGQHSQDSEGEG 578
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 28.9 bits (65), Expect = 0.18
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 73 KCDTCEKSFTNSQNLNTHQLIH 94
KC C KSF+ NL H H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 3.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 45 KCEYCHKVFDQQSSLLSH 62
KC C K F ++S+L H
Sbjct: 1 KCPDCGKSFSRKSNLKRH 18
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 31.7 bits (72), Expect = 0.20
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q K QQ+ + Q +Q+QQ+ Q+ ++ +Q+QQ +QQ+
Sbjct: 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQR 73
Score = 31.3 bits (71), Expect = 0.31
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K + Q+ + Q +Q+QQ+ Q+ ++ +Q+QQ +QQ+ S
Sbjct: 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75
Score = 30.6 bits (69), Expect = 0.55
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q +I + Q +Q+QQ+ Q+ ++ +Q+QQ +QQ+
Sbjct: 38 QQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75
Score = 29.8 bits (67), Expect = 0.85
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q +++QQ+ + Q +Q+QQ+ Q+ ++ +Q+QQS
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQS 68
Score = 29.4 bits (66), Expect = 1.5
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
I++ +++QQ+ + Q +Q+QQ+ Q+ ++ +Q+QQ
Sbjct: 31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQ 67
Score = 29.0 bits (65), Expect = 1.6
Identities = 10/41 (24%), Positives = 26/41 (63%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++ + ++ + Q +Q+QQ+ Q+ ++ +Q+QQ +QQ+
Sbjct: 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75
Score = 27.1 bits (60), Expect = 8.2
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ---QQQQQQQQQQQQQ 225
Q +I+N + A+ + Q+ Q+ ++ +Q+QQ +QQ+ Q Q+ +Q+Q
Sbjct: 38 QQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHL 91
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 31.6 bits (72), Expect = 0.21
Identities = 5/43 (11%), Positives = 37/43 (86%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++AK++ +Q ++QQ++ ++++++++++ +++++ +++++++ +
Sbjct: 7 KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELE 49
Score = 29.3 bits (66), Expect = 1.2
Identities = 4/37 (10%), Positives = 29/37 (78%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
K+ +++ + +++Q ++QQ++ ++++++++++ +++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEK 37
Score = 26.6 bits (59), Expect = 10.0
Identities = 3/42 (7%), Positives = 33/42 (78%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ K +QQ++ ++++++++++ +++++ +++++++ ++++
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 32.2 bits (74), Expect = 0.22
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQ 214
++Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 31.1 bits (71), Expect = 0.43
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQE 265
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQ 215
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQ 216
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQ 217
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQ 218
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQ 219
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQ 220
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQ 221
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQ 222
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 30.7 bits (70), Expect = 0.68
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQQQ 224
+Q+ ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 29.1 bits (66), Expect = 1.7
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQ 207
EQ +++Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 29.1 bits (66), Expect = 2.2
Identities = 4/25 (16%), Positives = 16/25 (64%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQ 212
+ + ++ +Q+ ++QQ++ ++Q
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQ 264
Score = 28.8 bits (65), Expect = 2.6
Identities = 6/44 (13%), Positives = 24/44 (54%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ K + +Q+ ++QQ++ ++Q+ ++ + + ++ +S
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKS 282
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 32.1 bits (73), Expect = 0.22
Identities = 11/62 (17%), Positives = 26/62 (41%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+D D++ Q++ Q Q++ Q Q Q + + QQ Q ++ +++
Sbjct: 108 DDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKVDEKEPL 167
Query: 225 QS 226
+
Sbjct: 168 LT 169
>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a
role in the biomineralisation of teeth. They seem to
regulate formation of crystallites during the secretory
stage of tooth enamel development and are thought to
play a major role in the structural organisation and
mineralisation of developing enamel. The extracellular
matrix of the developing enamel comprises two major
classes of protein: the hydrophobic amelogenins and the
acidic enamelins. Circular dichroism studies of porcine
amelogenin have shown that the protein consists of 3
discrete folding units: the N-terminal region appears to
contain beta-strand structures, while the C-terminal
region displays characteristics of a random coil
conformation. Subsequent studies on the bovine protein
have indicated the amelogenin structure to contain a
repetitive beta-turn segment and a "beta-spiral" between
Gln112 and Leu138, which sequester a (Pro, Leu, Gln)
rich region. The beta-spiral offers a probable site for
interactions with Ca2+ ions. Muatations in the human
amelogenin gene (AMGX) cause X-linked hypoplastic
amelogenesis imperfecta, a disease characterised by
defective enamel. A 9bp deletion in exon 2 of AMGX
results in the loss of codons for Ile5, Leu6, Phe7 and
Ala8, and replacement by a new threonine codon,
disrupting the 16-residue (Met1-Ala16) amelogenin signal
peptide.
Length = 165
Score = 31.3 bits (71), Expect = 0.23
Identities = 12/46 (26%), Positives = 13/46 (28%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + QQ Q Q Q Q QQ Q Q Q
Sbjct: 85 TQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQP 130
Score = 27.8 bits (62), Expect = 2.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQ Q Q Q Q QQ Q Q
Sbjct: 86 QHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQP 118
Score = 27.8 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
M Q Q Q QQ Q Q Q Q QQ Q Q
Sbjct: 82 MTPTQHHQPNLPQPAQQPFQPQPLQPPQPQQPMQPQP 118
>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated
in de novo protein folding [Posttranslational
modification, protein turnover, chaperones].
Length = 145
Score = 31.2 bits (71), Expect = 0.24
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
E +K ++ L E+A K+QQ + Q+ +Q +Q+ QQ QQ+Q Q++Q
Sbjct: 97 EFLKKRIEEL--------EKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQKKQ 145
Score = 29.3 bits (66), Expect = 0.83
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++ ++ QQ + Q+ +Q +Q+ QQ QQ+Q Q++
Sbjct: 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQKKQ 145
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 31.9 bits (73), Expect = 0.25
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 168 KPNVDNLQ-TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
K VD L+ Q+S N+ Q +++ + +++ QQ Q + Q Q+Q++ ++
Sbjct: 186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER 241
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 30.5 bits (69), Expect = 0.25
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L+ S+ D A+ K +QQQ QQQ Q Q Q Q QQQQ ++ QQQQQ
Sbjct: 35 LKELSSSEDLTAEEKQKQQQLIQQQIQMLQAQIAQLQQQQSEEAQQQQQSSI 86
Score = 25.8 bits (57), Expect = 9.6
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +++Q+QQQ QQQ Q Q Q Q QQQQ ++ QQ
Sbjct: 44 LTAEEKQKQQQLIQQQIQMLQAQIAQLQQQQSEEAQQQ 81
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.9 bits (72), Expect = 0.26
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q K ++ ++Q + QQ+ Q +Q+ + +Q+QQ+ +
Sbjct: 216 QQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAK 258
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++A+ ++ ++Q + QQ+ Q +Q+ + +Q+QQ
Sbjct: 213 KRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQ 255
Score = 29.2 bits (65), Expect = 2.1
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQS 226
E AK Q +++ ++Q + QQ+ Q +Q+ + +Q+QQ++
Sbjct: 210 EDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEA 257
Score = 28.0 bits (62), Expect = 4.9
Identities = 10/60 (16%), Positives = 32/60 (53%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + ++ +L+ + S D + +++++ ++Q + QQ+ Q +Q+ + +Q+Q
Sbjct: 195 NFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQ 254
>gnl|CDD|111097 pfam02166, Androgen_recep, Androgen receptor.
Length = 423
Score = 31.7 bits (71), Expect = 0.27
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQ---------QQQQQQQQQS 226
+QQQQ+ +QQQQQQ + Q + ++QQ QQQS
Sbjct: 48 CLQQQQETSPRQQQQQQHGEDGSPQAHIRGPTGYLALDEEQQPSQQQS 95
>gnl|CDD|204831 pfam12137, RapA_C, RNA polymerase recycling family C-terminal.
This domain is found in bacteria. This domain is about
360 amino acids in length. This domain is found
associated with pfam00271, pfam00176. The function of
this domain is not known, but structurally it forms an
alpha-beta fold in nature with a central beta-sheet
flanked by helices and loops, the beta-sheet being
mainly antiparallel and flanked by four alpha helices,
among which the two longer helices exhibit a coiled-coil
arrangement.
Length = 362
Score = 31.7 bits (73), Expect = 0.27
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+K + Q +Q Q+ ++ ++Q ++ +Q +QQ QQQ +
Sbjct: 273 VKALRPQIEQLLQKAEKLAEEQLEEIIEQAKQQMQQQLSA 312
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 31.9 bits (72), Expect = 0.28
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
A+I+ + Q + Q + ++ ++ QQ Q QQ
Sbjct: 194 RSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQ 235
Score = 31.1 bits (70), Expect = 0.39
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
TQ+ + K++ Q +Q+ Q + Q + ++ ++ QQ Q
Sbjct: 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQ 231
Score = 31.1 bits (70), Expect = 0.43
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ QI+ EQ + + +Q Q+ + Q + +Q+ Q + Q + +QQ
Sbjct: 240 ISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAA 294
Score = 31.1 bits (70), Expect = 0.51
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q +K V +L+ + + +++A+ + Q + ++ ++ QQ Q QQ+
Sbjct: 178 QASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237
Query: 221 QQQQQ 225
Q Q
Sbjct: 238 AQISQ 242
Score = 29.2 bits (65), Expect = 2.1
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ QIS +Q + +Q +++++Q Q+ + Q + +Q+ Q + Q +
Sbjct: 233 IQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVR 287
Score = 28.1 bits (62), Expect = 4.5
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
I D Q K QQ + +Q +++++Q Q+ + Q + +Q+ Q +
Sbjct: 229 TAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEA 280
Score = 27.7 bits (61), Expect = 6.1
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQ + Q + Q +Q+ Q + Q + ++ ++ QQ
Sbjct: 177 LQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQ 228
>gnl|CDD|106978 PHA00670, PHA00670, hypothetical protein.
Length = 540
Score = 31.7 bits (72), Expect = 0.29
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ ++Q Q ++Q+ QQQQ QQ + +
Sbjct: 493 IVPKEQVQSIRKQRAQQQQAAQQAAIAEAAANAAKALG 530
Score = 30.2 bits (68), Expect = 0.82
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQ 209
I ++Q Q ++Q+ QQQQ QQ
Sbjct: 493 IVPKEQVQSIRKQRAQQQQAAQQ 515
Score = 29.8 bits (67), Expect = 1.1
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +++ ++Q+ QQQQ QQ + + + Q Q
Sbjct: 496 KEQVQSIRKQRAQQQQAAQQAAIAEAAANAAKALGKAQTSLQE 538
Score = 27.5 bits (61), Expect = 6.7
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 168 KPNVDNL-----------QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
KP+ D + T I ++ I+ Q+ QQQQ QQ + + +
Sbjct: 472 KPDWDRMADMLADMLGVPPTLIVPKEQVQSIRKQRAQQQQAAQQAAIAEAAANAAKALGK 531
Query: 217 QQQQQQQQQ 225
Q Q+
Sbjct: 532 AQTSLQEAL 540
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.2 bits (63), Expect = 0.29
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
Y+C C K F + L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.3 bits (53), Expect = 6.5
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
++C C KVF +S+L H
Sbjct: 1 YRCPECGKVFKSKSALREH 19
>gnl|CDD|234273 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are found
in endospore-forming bacteria such as Bacillus subtilis
appear redundant during vegetative growth, although the
member designated spoIIIJ (stage III sporulation protein
J) has a distinct role in spore formation. YidC, its
mitochondrial homolog Oxa1, and its chloroplast homolog
direct insertion into the bacterial/organellar inner (or
only) membrane. This model describes an N-terminal
sequence region, including a large periplasmic domain
lacking in YidC members from Gram-positive species. The
multifunctional YidC protein acts both with and
independently of the Sec system [Protein fate, Protein
and peptide secretion and trafficking].
Length = 366
Score = 31.5 bits (72), Expect = 0.30
Identities = 4/35 (11%), Positives = 6/35 (17%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q + Q Q +
Sbjct: 19 QAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAA 53
Score = 31.5 bits (72), Expect = 0.34
Identities = 4/36 (11%), Positives = 5/36 (13%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q + Q Q
Sbjct: 19 QAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAAP 54
Score = 31.1 bits (71), Expect = 0.42
Identities = 4/35 (11%), Positives = 5/35 (14%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q + Q Q
Sbjct: 19 QAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAA 53
Score = 29.6 bits (67), Expect = 1.1
Identities = 2/32 (6%), Positives = 3/32 (9%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ Q Q
Sbjct: 22 QSDPGPPPPKPPAAAQTASAQSATAAATPAAA 53
Score = 28.8 bits (65), Expect = 2.5
Identities = 2/40 (5%), Positives = 4/40 (10%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q +
Sbjct: 23 SDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAA 62
Score = 26.9 bits (60), Expect = 9.7
Identities = 3/43 (6%), Positives = 6/43 (13%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ + Q Q +
Sbjct: 22 QSDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAAAA 64
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 31.6 bits (71), Expect = 0.31
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+D+ D LQ + E + + QQ +QQQQQQQQQQQ ++++
Sbjct: 603 DDLAAATDKLQKAVM---ECGRTEYQQAAAANSGSSSNSGEQQQQQQQQQQQNSEEKK 657
Score = 29.3 bits (65), Expect = 2.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 169 PNVDNLQTQISNNDEQAKI----KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
PNV + + Q + + + QQ +QQQQQQQQQQQ ++++
Sbjct: 598 PNVAKDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQQQQQQQNSEEKK 657
>gnl|CDD|113156 pfam04375, HemX, HemX. This family consists of several bacterial
HemX proteins. The hemX gene is not essential for haem
synthesis in B. subtilis. HemX is a polytopic membrane
protein which by an unknown mechanism down-regulates the
level of HemA.
Length = 372
Score = 31.4 bits (71), Expect = 0.32
Identities = 6/54 (11%), Positives = 17/54 (31%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + + A+ + Q+ Q ++ Q + + Q + +
Sbjct: 69 LTQLAQALEAQLAQEVRVLIRDNQEALAQLEKVLGQLDKSLAELQDRVAAISGA 122
Score = 30.6 bits (69), Expect = 0.57
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
V LQ ++ ++ Q + Q Q+ + + Q+ Q ++ Q + +
Sbjct: 55 VAGLQIKLEALAQELTQLAQALEAQLAQEVRVLIRDNQEALAQLEKVLGQLDKSLA 110
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 31.6 bits (72), Expect = 0.33
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + + + Q +QQ Q Q + + Q + + Q
Sbjct: 217 QVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLL 269
Score = 30.5 bits (69), Expect = 0.75
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + + Q +QQ Q Q + + Q + + Q
Sbjct: 216 AQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQ 267
Score = 30.5 bits (69), Expect = 0.80
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQ---QQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + Q+ + Q + + Q +QQ Q Q + + Q + + Q
Sbjct: 210 RLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQL 268
Score = 29.7 bits (67), Expect = 1.3
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L+ ++ + Q + Q + Q +QQ Q Q + + Q
Sbjct: 206 ELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAE 259
Score = 28.2 bits (63), Expect = 4.2
Identities = 7/51 (13%), Positives = 20/51 (39%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ ++A+ +++ + Q + Q +QQ Q Q + +
Sbjct: 204 LEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARAR 254
Score = 27.8 bits (62), Expect = 4.7
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
Q +++ + QQ Q Q + + Q + + Q
Sbjct: 223 AQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPL 271
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 31.7 bits (72), Expect = 0.33
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K+ M QQQ+Q+++ +Q+ + + +++ Q+ Q+ +Q+ Q
Sbjct: 4 DKLDMLQQQKQEERNKQKSRVNELKEKHDQELQKLKQELQSL 45
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 31.2 bits (70), Expect = 0.34
Identities = 15/67 (22%), Positives = 37/67 (55%)
Query: 159 SHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
S Q PE + NV+ L + ++K + +Q+Q + Q+ Q+ + +++Q Q++
Sbjct: 164 SFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEE 223
Query: 219 QQQQQQQ 225
Q++++ +
Sbjct: 224 QEEEEVE 230
>gnl|CDD|220771 pfam10471, APC_CDC26, Anaphase-promoting complex APC subunit 1.
The anaphase-promoting complex (APC) or cyclosome is a
cell cycle-regulated ubiquitin-protein ligase that
regulates important events in mitosis such as the
initiation of anaphase and exit from telophase. The APC,
in conjunction with other enzymes, assembles
multi-ubiquitin chains on a variety of regulatory
proteins thereby targeting them for proteolysis by the
26S proteasome. CDC26 is one of the nine or so subunits
identified within APC but its exact function is not
known. The APC/C becomes active at the
metaphase/anaphase transition and remains active during
G1 phase. One mechanism linked to activation of the
APC/C is phosphorylation. The yeast APC/C is composed of
at least 13 subunits, but the function of many of the
subunits is unknown. Hcn1 is the smallest subunit of the
S. pombe APC/C, and is found to be essential for cell
viability, APC/C integrity, and proper APC/C regulation.
In addition, Hcn1 phosphorylation indicates a specific
role for the phosphorylation of this subunit late in the
cell cycle.
Length = 78
Score = 29.3 bits (66), Expect = 0.34
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++Q+ QQQQ QQQ + S
Sbjct: 20 EDSRKEQKLQQQQNAQQQSVSSNSAAGETAASTDSPNDSS 59
Score = 29.3 bits (66), Expect = 0.42
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++Q+ QQQQ QQQ +
Sbjct: 24 KEQKLQQQQNAQQQSVSSNSAAGETAASTDSPNDSSK 60
Score = 28.6 bits (64), Expect = 0.79
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +++Q+ QQQQ QQQ + +
Sbjct: 19 YEDSRKEQKLQQQQNAQQQSVSSNSAAGETAASTDSPN 56
Score = 26.6 bits (59), Expect = 3.7
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
E ++ + + QQQQ QQQ +
Sbjct: 20 EDSRKEQKLQQQQNAQQQSVSSNSAAGETAASTDSPNDSS 59
Score = 25.5 bits (56), Expect = 9.4
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
D + + K+QQQQ QQQ +
Sbjct: 21 DSRKEQKLQQQQNAQQQSVSSNSAAGETAASTDSPNDSS 59
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 31.2 bits (71), Expect = 0.35
Identities = 6/38 (15%), Positives = 7/38 (18%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + QQ QQ Q
Sbjct: 94 PPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQP 131
Score = 30.4 bits (69), Expect = 0.66
Identities = 5/36 (13%), Positives = 7/36 (19%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q + QQ QQ
Sbjct: 93 RPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGY 128
Score = 30.0 bits (68), Expect = 0.69
Identities = 5/37 (13%), Positives = 7/37 (18%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q + QQ QQ
Sbjct: 91 APRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPG 127
Score = 29.6 bits (67), Expect = 1.0
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 11/55 (20%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQ-----------QQQQQQQQQQQQQQQQQS 226
E A + + ++ + Q Q Q Q + Q +
Sbjct: 54 EAALKQANARIEELEAQAQHPQSQSSGGFLSGMFGGGAPRPPPAAPAVQPPAPPA 108
Score = 28.1 bits (63), Expect = 3.4
Identities = 6/37 (16%), Positives = 7/37 (18%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + QQ QQ Q
Sbjct: 98 APAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134
Score = 26.9 bits (60), Expect = 7.0
Identities = 3/38 (7%), Positives = 5/38 (13%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q + QQ
Sbjct: 87 FGGGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQ 124
>gnl|CDD|227477 COG5148, RPN10, 26S proteasome regulatory complex, subunit
RPN10/PSMD4 [Posttranslational modification, protein
turnover, chaperones].
Length = 243
Score = 31.1 bits (70), Expect = 0.36
Identities = 4/29 (13%), Positives = 20/29 (68%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
++ M++++++Q+ Q+ ++ + ++ Q+
Sbjct: 215 RLSMEEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQ 215
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQ 217
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQ 219
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQ 220
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQ 221
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQ 222
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQ 223
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQQQ 224
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
Score = 28.4 bits (63), Expect = 2.9
Identities = 3/25 (12%), Positives = 17/25 (68%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQQQ 225
++++++Q+ Q+ ++ + ++ Q+
Sbjct: 219 EEEKKRQEVAAQKSSEETEDKKMQE 243
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 30.4 bits (69), Expect = 0.37
Identities = 3/49 (6%), Positives = 32/49 (65%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
I E+ + + ++++++++++++ + Q+++++++ ++ ++ + +
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 30.0 bits (68), Expect = 0.49
Identities = 3/42 (7%), Positives = 32/42 (76%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D + K + +++++++++++++++++ + Q+++++++ ++
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEE 54
Score = 28.0 bits (63), Expect = 2.3
Identities = 2/49 (4%), Positives = 35/49 (71%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
I +++ + + ++++++++++++++ + Q+++++++ ++ ++ ++
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 27.7 bits (62), Expect = 2.8
Identities = 2/40 (5%), Positives = 33/40 (82%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
I ++++++++++++++++++++++++ + Q++++++
Sbjct: 11 IIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREK 50
Score = 27.3 bits (61), Expect = 4.1
Identities = 3/44 (6%), Positives = 34/44 (77%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D+ +I +++++++++++++++++++++++ + Q+++++
Sbjct: 6 DKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEERE 49
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 30.9 bits (71), Expect = 0.37
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
++M Q + QQQQ QQ Q+
Sbjct: 172 LRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 28.2 bits (64), Expect = 3.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q + Q + QQQQ QQ Q+ +
Sbjct: 165 RFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ Q Q + Q + QQQQ QQ Q+
Sbjct: 165 RFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ Q Q + Q + QQQQ QQ Q+
Sbjct: 165 RFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.9 bits (63), Expect = 4.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q Q + Q + QQQQ QQ Q+
Sbjct: 165 RFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.5 bits (62), Expect = 5.3
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
++ Q + QQQQ QQ Q+
Sbjct: 172 LRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.5 bits (62), Expect = 6.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q Q + Q + QQQQ QQ Q+
Sbjct: 166 FQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
Score = 27.1 bits (61), Expect = 7.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
++ + Q + QQQQ QQ Q+
Sbjct: 170 QLLRMMQAGFRFQQQQGGGGYQQAQRGPT 198
>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction
mechanisms].
Length = 268
Score = 31.1 bits (70), Expect = 0.43
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQ 208
DNL S+ + A+ QQQQ Q+ QQ + ++ +
Sbjct: 227 DNLTLWTSDAEYSAQEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQ 219
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQ 220
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQ 221
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQ 222
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQ 223
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 202 QQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
Score = 26.8 bits (59), Expect = 8.9
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 203 QQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + QQQQ Q+ QQ + ++ +
Sbjct: 241 QEDEGQQQQAQENQQPEPKESTE 263
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 31.4 bits (71), Expect = 0.44
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
E+A ++ + + Q Q + Q + Q+ Q
Sbjct: 293 KERALAELPARVAELQAQLNKAQHELAQKAAPLAAAQAA 331
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 29.9 bits (68), Expect = 0.45
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+I+ Q QQ +Q QQQ +Q++ ++ +Q+ Q Q +Q Q+
Sbjct: 47 IKEIRKQSAQQIEQIQQQVEQERAKRLEQKNQLLFQIEQVQE 88
Score = 29.1 bits (66), Expect = 0.95
Identities = 14/55 (25%), Positives = 32/55 (58%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ Q+ ++A ++++Q QQ +Q QQQ +Q++ ++ +Q+ Q Q +Q
Sbjct: 31 QLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQERAKRLEQKNQLLFQIEQ 85
Score = 28.3 bits (64), Expect = 1.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++ +Q+ QQ + Q Q+ ++ ++Q QQ +Q QQQ +Q
Sbjct: 26 QEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQ 67
Score = 28.3 bits (64), Expect = 1.7
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ +++Q+ QQ + Q Q+ ++ ++Q QQ +Q QQQ +Q+
Sbjct: 26 QEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQE 68
Score = 28.3 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
E K QQ +Q QQQ +Q++ ++ +Q+ Q Q +Q Q+
Sbjct: 48 KEIRKQSAQQIEQIQQQVEQERAKRLEQKNQLLFQIEQVQE 88
Score = 28.3 bits (64), Expect = 1.9
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
LQ ++ Q + ++QQ + Q Q+ ++ ++Q QQ +Q QQQ +Q++ +
Sbjct: 21 LQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQERAK 71
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++ + + QQ +Q QQQ +Q++ ++ +Q+ Q Q +Q Q+
Sbjct: 48 KEIRKQSAQQIEQIQQQVEQERAKRLEQKNQLLFQIEQVQE 88
Score = 27.6 bits (62), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ-------QQQQQQQQQQQQ 225
E+ K ++Q + Q+Q Q +Q+ QQ + Q Q+ Q QQ +Q QQQ
Sbjct: 15 ERWKEELQAELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQ 64
>gnl|CDD|203394 pfam06133, DUF964, Protein of unknown function (DUF964). This
family consists of several relatively short bacterial
and archaeal hypothetical sequences. The function of
this family is unknown.
Length = 108
Score = 29.8 bits (68), Expect = 0.46
Identities = 10/44 (22%), Positives = 28/44 (63%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
DE+A+ + + Q+ Q++ Q++Q ++ ++ QQ+ Q+ +++
Sbjct: 30 KADEEAQKLIDEFQKLQEEIQEKQMFGKEIPKEVQQKIQELKRE 73
Score = 27.1 bits (61), Expect = 3.3
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 173 NLQTQISNNDE-QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ I ++E Q I Q+ Q++ Q++Q ++ ++ QQ+ Q+ +++
Sbjct: 24 EAKAAIKADEEAQKLIDEFQKLQEEIQEKQMFGKEIPKEVQQKIQELKREIDL 76
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.9 bits (68), Expect = 0.50
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
++A + + QQ+ +Q +++ ++ QQ + + +QQ Q
Sbjct: 1 DKAARNLAEAQQELEQAEEKLEELQQYRLEYRQQLSGSGQ 40
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 30.3 bits (69), Expect = 0.52
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
M ++Q+ Q+Q ++ + + +QQ++ + +
Sbjct: 1 MSNEEQKTPQEQVSEEIEAEVEQQEEADEAE 31
Score = 27.6 bits (62), Expect = 5.0
Identities = 7/56 (12%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQ------------QQQQQQQQQQQQQQQ 225
+E+ K +Q ++ + + +QQ++ + + + + Q + Q +++
Sbjct: 3 NEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEER 58
Score = 27.2 bits (61), Expect = 5.4
Identities = 7/56 (12%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQ------QQQQQQQQQQQQQQQQQQQQQQS 226
+ EQ +++ + +QQ++ + + + + + + Q + Q +++ S
Sbjct: 5 EQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDS 60
Score = 26.8 bits (60), Expect = 8.4
Identities = 5/28 (17%), Positives = 17/28 (60%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++Q+ Q+Q ++ + + +QQ++ +
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAE 31
>gnl|CDD|218069 pfam04404, ERF, ERF superfamily. The DNA single-strand annealing
proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52,
function in RecA-dependent and RecA-independent DNA
recombination pathways. This family includes proteins
related to ERF.
Length = 158
Score = 30.0 bits (68), Expect = 0.55
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
I+++D+ K Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 119 IASDDDDDDNKGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 30.0 bits (68), Expect = 0.60
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.6 bits (67), Expect = 0.72
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q Q+ +Q+ QQQQQ + Q+Q
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
Score = 29.2 bits (66), Expect = 1.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q+ +Q+ QQQQQ + Q+Q +
Sbjct: 129 KGNGQSQRPKQKSVTQQQQQLKDALQKQNN 158
>gnl|CDD|226204 COG3679, COG3679, Regulatory protein involved in competence
development and sporulation [Replication, recombination
and repair; Signal transduction mechanisms].
Length = 118
Score = 29.6 bits (67), Expect = 0.58
Identities = 10/56 (17%), Positives = 29/56 (51%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + ++E K+ + +Q Q+Q Q++Q+ + ++ + Q+ +Q+ Q
Sbjct: 24 ALKEAKRAVEADEEAKKLFEEFRQLQEQFQEKQRFGYEPDYEEVTKAQELKQEIQL 79
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/50 (22%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 180 NNDEQAK------IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
DE+AK ++Q+Q Q++Q+ + ++ + Q+ +Q+ Q ++
Sbjct: 33 EADEEAKKLFEEFRQLQEQFQEKQRFGYEPDYEEVTKAQELKQEIQLNEK 82
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 30.7 bits (70), Expect = 0.59
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
P V L + E K ++ Q + Q +Q + + Q Q Q +QQ
Sbjct: 118 SAEDPAVPELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQ 173
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 0.60
Identities = 5/41 (12%), Positives = 30/41 (73%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E+A+ +++ ++ +++ ++++++ Q+++ + ++ +++ QQ
Sbjct: 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ 577
Score = 29.4 bits (67), Expect = 1.5
Identities = 7/65 (10%), Positives = 38/65 (58%), Gaps = 13/65 (20%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQ---------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
++ L I++ +E + +++Q ++ ++ +++ ++++++ Q+++ + ++ +
Sbjct: 517 KLNEL---IASLEEL-ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572
Query: 221 QQQQQ 225
++ QQ
Sbjct: 573 KEAQQ 577
Score = 28.3 bits (64), Expect = 4.3
Identities = 8/70 (11%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 164 PEDIKPNVDNLQTQISNNDEQ-----AKIKMQQQQQQQQQQQQQQ--QQQQQQQQQQQQQ 216
PE+I ++ + I + E+ A ++ +++ +Q+ ++ + ++ ++ +++ +++
Sbjct: 500 PENI---IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEK 556
Query: 217 QQQQQQQQQS 226
+++ Q+++
Sbjct: 557 KEKLQEEEDK 566
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.5 bits (67), Expect = 0.60
Identities = 2/44 (4%), Positives = 22/44 (50%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
E K+ +++ + + ++ +++ ++ + + +++ + +
Sbjct: 30 EKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 29.5 bits (67), Expect = 0.70
Identities = 2/54 (3%), Positives = 28/54 (51%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ I+ + + K ++++ + ++ + +++ + + ++ +++ ++ + +
Sbjct: 11 KEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Score = 28.0 bits (63), Expect = 2.2
Identities = 4/50 (8%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 181 NDEQAKIKMQQQQQQQQQQQ------QQQQQQQQQQQQQQQQQQQQQQQQ 224
E+AK + +Q++++ + ++ +++ + + ++ +++ ++ + + +
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELAR 67
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 30.3 bits (69), Expect = 0.62
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K + + + + Q+ Q +Q + Q Q Q Q Q+
Sbjct: 74 AAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQAAPQAAQLQA 117
Score = 28.4 bits (64), Expect = 3.0
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 9/53 (16%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQ---------QQQQQQQQQQQQQQQ 225
+E I+ Q ++ + + + + + +Q + Q Q Q
Sbjct: 59 EELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQAAPQ 111
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.5 bits (69), Expect = 0.63
Identities = 7/40 (17%), Positives = 28/40 (70%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K K ++Q++ ++ + ++++++Q++ Q+++++QQ +
Sbjct: 137 KEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Score = 28.2 bits (63), Expect = 3.5
Identities = 7/39 (17%), Positives = 28/39 (71%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
EQ +++ + ++++++Q++ Q+++++QQ +++ +Q
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
Score = 27.5 bits (61), Expect = 6.2
Identities = 6/42 (14%), Positives = 28/42 (66%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
S +++ + + ++++++Q++ Q+++++QQ +++ +Q
Sbjct: 140 STREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 30.1 bits (68), Expect = 0.66
Identities = 8/51 (15%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 177 QISNN-----DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
I N EQ +++ +++++ +++++ Q+++Q+Q+ +++ +Q+
Sbjct: 80 SIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 29.7 bits (67), Expect = 0.79
Identities = 8/56 (14%), Positives = 32/56 (57%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
K N D++ + + Q +++++ +++++ Q+++Q+Q+ +++ +Q+
Sbjct: 75 KENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 26.6 bits (59), Expect = 8.0
Identities = 10/74 (13%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQ-------------QQQQQQQQQQQQ 211
E+++ V NL I + + K+ +++ + +Q +++++ ++
Sbjct: 48 EEVETIVFNLTNGIDVEETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKE 107
Query: 212 QQQQQQQQQQQQQQ 225
+++ Q+++Q+Q+
Sbjct: 108 EKRLHLQKEEQEQK 121
>gnl|CDD|220882 pfam10818, DUF2547, Protein of unknown function (DUF2547). This
bacterial family of proteins has no known function.
Length = 90
Score = 28.9 bits (65), Expect = 0.72
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
P LQ Q +NN+ + + QQ Q Q QQ QQQQ Q+ Q
Sbjct: 19 PEAQQLQAQNANNENEQNTVINQQIAQTAQIAQQVQQQQLFIALSQKPLQIAPH 72
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.6 bits (69), Expect = 0.73
Identities = 12/57 (21%), Positives = 31/57 (54%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
E+ K + + E+ +I+ + Q+ ++Q +QQQ++ Q++++Q+ Q+
Sbjct: 2562 ENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQE 2618
>gnl|CDD|224907 COG1996, RPC10, DNA-directed RNA polymerase, subunit RPC10
(contains C4-type Zn-finger) [Transcription].
Length = 49
Score = 27.7 bits (62), Expect = 0.80
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 14/47 (29%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYC-HKVFDQQSSLLSHNCPQMKPRP 71
YKC +C R + L +C YC ++ +K RP
Sbjct: 7 YKCARCGREVELDQETRGIRCPYCGSRIL-------------VKERP 40
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 30.2 bits (68), Expect = 0.80
Identities = 4/45 (8%), Positives = 24/45 (53%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N ++++ ++ ++++ + + Q +++ Q Q +++ + +
Sbjct: 93 NKVRSELIKKEDEEEEGKDKVNQSKEKYLPSQAQNLTEKRAESES 137
Score = 28.7 bits (64), Expect = 2.0
Identities = 4/37 (10%), Positives = 21/37 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++ ++++ + + Q +++ Q Q +++ + +S
Sbjct: 101 KKEDEEEEGKDKVNQSKEKYLPSQAQNLTEKRAESES 137
Score = 28.3 bits (63), Expect = 2.7
Identities = 4/41 (9%), Positives = 22/41 (53%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K++ + +++ ++++ + + Q +++ Q Q +++
Sbjct: 94 KVRSELIKKEDEEEEGKDKVNQSKEKYLPSQAQNLTEKRAE 134
Score = 27.9 bits (62), Expect = 4.3
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ------------QQQQQQQQQ 225
I DE+ + K + Q +++ Q Q +++ + + + +Q Q Q+ Q
Sbjct: 100 IKKEDEEEEGKDKVNQSKEKYLPSQAQNLTEKRAESESKITFKTELGKNIFKQFQLQESQ 159
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 30.0 bits (67), Expect = 0.80
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
E + VD++ + S++ + K K +++Q+Q Q ++QQ +++
Sbjct: 146 ESMDKEVDDILGEGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREP 195
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 30.6 bits (69), Expect = 0.82
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ A+ +++ Q+ +Q Q + + + +Q+ +QQQ
Sbjct: 496 DVARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQQ 533
Score = 29.5 bits (66), Expect = 1.6
Identities = 9/42 (21%), Positives = 26/42 (61%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
+ ++ S+ +E+ + +++Q + ++ + ++Q +Q Q Q Q Q
Sbjct: 978 MLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQ 1019
Score = 27.5 bits (61), Expect = 7.3
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ ++ ++ Q+ +Q Q + + + +Q+ +QQQS
Sbjct: 496 DVARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQQS 534
Score = 27.5 bits (61), Expect = 7.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+Q +Q +Q ++ Q QQ Q+Q +QQ
Sbjct: 929 LQSDPEQFEQLKEDYAQAQQMQRQARQQ 956
Score = 27.5 bits (61), Expect = 7.9
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
D+ + N+D K++ + +Q + ++ + ++Q +Q Q Q Q Q
Sbjct: 974 DSAEMLSENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQ 1019
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 30.4 bits (68), Expect = 0.83
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ A +K + +Q+Q Q+Q+ + +++ + Q + QQ
Sbjct: 524 QYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQAD 566
Score = 30.0 bits (67), Expect = 1.1
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q Q + K + + Q + QQ + + Q Q+++
Sbjct: 536 QLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSD 584
Score = 29.6 bits (66), Expect = 1.5
Identities = 8/52 (15%), Positives = 23/52 (44%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +++A ++ +++ + Q + QQ + + Q Q+++ S
Sbjct: 532 AKQRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGS 583
Score = 29.2 bits (65), Expect = 2.3
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
K + Q + QQ + + Q Q+++
Sbjct: 544 LEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSD 584
Score = 28.8 bits (64), Expect = 2.9
Identities = 7/52 (13%), Positives = 20/52 (38%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L+ + Q + + + +++ + Q + QQ + + Q Q+
Sbjct: 528 LKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQK 579
Score = 28.5 bits (63), Expect = 3.3
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
E + Q + QQ + + Q Q+++ ++
Sbjct: 548 KETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQ 592
Score = 28.5 bits (63), Expect = 3.5
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q+ + K + + Q + QQ + + Q Q+++
Sbjct: 534 QRQLQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSD 584
Score = 28.1 bits (62), Expect = 4.4
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
LQ Q + + + + Q + QQ + + Q Q+++ +++
Sbjct: 537 LQEQKALLEHKKETLEYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYREA 589
Score = 27.7 bits (61), Expect = 6.2
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+EQ + ++ +Q+Q Q+Q+ + +++ + Q + QQ
Sbjct: 522 EEQYALLKEEAKQRQLQEQKALLEHKKETLEYTSQLAELLDQQA 565
Score = 27.3 bits (60), Expect = 7.9
Identities = 6/42 (14%), Positives = 14/42 (33%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q + QQ + + Q Q+++ ++ Q
Sbjct: 554 TSQLAELLDQQADRFELSAQAAGSQKERGSDLYREALAQNAA 595
>gnl|CDD|236781 PRK10869, PRK10869, recombination and repair protein; Provisional.
Length = 553
Score = 30.3 bits (69), Expect = 0.85
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+M+ Q Q + Q QQQ Q++ ++Q Q Q
Sbjct: 157 QEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQ 193
Score = 28.4 bits (64), Expect = 3.8
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D A Q+ + Q Q + Q QQQ Q++ ++Q
Sbjct: 147 DAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188
Score = 27.2 bits (61), Expect = 7.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ + Q Q + Q QQQ Q++ ++Q
Sbjct: 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188
Score = 27.2 bits (61), Expect = 7.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + Q Q + Q QQQ Q++ ++Q
Sbjct: 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQ 188
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.5 bits (69), Expect = 0.85
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ Q +M Q+Q Q ++Q Q + +++ Q ++ +QQ+
Sbjct: 338 LDKLQPGEEMTPQRQWLIQAEEQMQDRMKRETAAQAKEMDKQQK 381
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+Q Q ++Q Q + +++ Q ++ +QQ++
Sbjct: 349 PQRQWLIQAEEQMQDRMKRETAAQAKEMDKQQKT 382
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 30.0 bits (68), Expect = 0.87
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQA+ + + Q + + Q Q Q + Q Q Q +
Sbjct: 94 EQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL 136
Score = 29.2 bits (66), Expect = 1.6
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
P D + ++ + ++ + Q + Q Q Q + Q Q Q + +++ +
Sbjct: 86 PRDYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAE 141
Score = 28.4 bits (64), Expect = 3.0
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+A + + Q + + Q Q Q + Q Q Q + +
Sbjct: 97 EAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELE 137
Score = 28.1 bits (63), Expect = 3.5
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++A+ +Q + Q Q+Q + + Q Q
Sbjct: 154 DRARAALQAAEAALAAAQAAQKQNLALLESEVSGAQAQVAS 194
>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated.
Length = 374
Score = 30.3 bits (68), Expect = 0.88
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K +++QQ + +Q +Q +Q +Q + Q + +Q Q Q ++
Sbjct: 30 KFELEQQLVENKQDKQGKQYKQDRGIQYAETKQDNQVQSEN 70
Score = 29.2 bits (65), Expect = 1.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
E K + +QQ + +Q +Q +Q +Q + Q + +Q Q QS
Sbjct: 22 KRSELDSNKFELEQQLVENKQDKQGKQYKQDRGIQYAETKQDNQVQS 68
Score = 28.0 bits (62), Expect = 4.8
Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+D + +D+ + ++ EQ ++ +Q +Q +Q +Q + Q + +Q Q Q +
Sbjct: 19 KKDKRSELDSNKFEL----EQQLVENKQDKQGKQYKQDRGIQYAETKQDNQVQSE 69
>gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on
genitalia-1 (SMG-1), catalytic domain; The SMG-1
catalytic domain subfamily is part of a larger
superfamily that includes the catalytic domains of other
kinases such as the typical serine/threonine/tyrosine
protein kinases (PKs), aminoglycoside
phosphotransferase, choline kinase, and RIO kinases.
SMG-1 is a member of the phosphoinositide
3-kinase-related protein kinase (PIKK) subfamily. PIKKs
have intrinsic serine/threonine kinase activity and are
distinguished from other PKs by their unique catalytic
domain, similar to that of lipid PI3K, and their large
molecular weight (240-470 kDa). In addition to its
catalytic domain, SMG-1 contains a FATC (FRAP, ATM and
TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays
a critical role in the mRNA surveillance mechanism known
as non-sense mediated mRNA decay (NMD). NMD protects the
cells from the accumulation of aberrant mRNAs with
premature termination codons (PTCs) generated by genome
mutations and by errors during transcription and
splicing. SMG-1 phosphorylates Upf1, another central
component of NMD, at the C-terminus upon recognition of
PTCs. The phosphorylation/dephosphorylation cycle of
Upf1 is essential for promoting NMD.
Length = 307
Score = 30.1 bits (68), Expect = 0.91
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQ 212
+ QQ++ Q Q+ Q Q Q
Sbjct: 100 RWQQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.7 bits (67), Expect = 1.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQ 213
K QQ++ Q Q+ Q Q Q
Sbjct: 99 KRWQQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQ 214
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQ 215
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQ 216
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQ 217
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQ 218
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQ 219
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQ 220
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQ 221
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQ 222
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQ 223
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 202 QQQQQQQQQQQQQQQQQQQQQQQ 224
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 203 QQQQQQQQQQQQQQQQQQQQQQQ 225
QQ++ Q Q+ Q Q Q
Sbjct: 102 QQREAVLQAQKSQVGYQNPQIPG 124
>gnl|CDD|220844 pfam10675, DUF2489, Protein of unknown function (DUF2489). This is
a bacterial family of uncharacterized proteins.
Length = 131
Score = 29.1 bits (66), Expect = 0.94
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQ 208
K+K Q++ Q++ Q + +Q ++ +
Sbjct: 14 KLKKQKELQEKAQAEAKQARRAR 36
Score = 28.7 bits (65), Expect = 1.4
Identities = 5/23 (21%), Positives = 17/23 (73%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQ 210
K+++Q++ Q++ Q + +Q ++ +
Sbjct: 14 KLKKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQ 211
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQ 212
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQ 213
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQ 214
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQ 215
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQ 216
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQ 217
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQ 218
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQ 219
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQ 220
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQ 221
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 202 QQQQQQQQQQQQQQQQQQQQQ 222
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 203 QQQQQQQQQQQQQQQQQQQQQ 223
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 204 QQQQQQQQQQQQQQQQQQQQQ 224
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 27.5 bits (62), Expect = 3.2
Identities = 4/21 (19%), Positives = 15/21 (71%)
Query: 205 QQQQQQQQQQQQQQQQQQQQQ 225
++Q++ Q++ Q + +Q ++ +
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
Score = 26.8 bits (60), Expect = 6.1
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 206 QQQQQQQQQQQQQQQQQQQQS 226
++Q++ Q++ Q + +Q ++
Sbjct: 16 KKQKELQEKAQAEAKQARRAR 36
>gnl|CDD|219690 pfam07996, T4SS, Type IV secretion system proteins. Members of
this family are components of the type IV secretion
system. They mediate intracellular transfer of
macromolecules via a mechanism ancestrally related to
that of bacterial conjugation machineries.
Length = 195
Score = 29.6 bits (67), Expect = 1.0
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+D+ + D QA+I+ +Q Q +Q + Q Q Q+ +++ ++QQ +
Sbjct: 145 IDSAKDPKEIADLQARIQAEQAMLQNEQTKLQMLQMLQEAEERLEEQQAAE 195
Score = 26.9 bits (60), Expect = 7.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQ Q QQ Q +QQ QQ +QQ S
Sbjct: 11 SQSLAQSLQQLAQWAQQLDQLKQQIQQAKQQYNS 44
Score = 26.5 bits (59), Expect = 9.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
I D + + Q QQ Q QQ Q +QQ QQ +QQ
Sbjct: 1 GIPVVDAASISQSLAQSLQQLAQWAQQLDQLKQQIQQAKQQYN 43
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 29.9 bits (68), Expect = 1.0
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q + Q +Q + + +Q QS
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQS 496
Score = 29.5 bits (67), Expect = 1.3
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
++Q + Q +Q + + +Q Q +
Sbjct: 469 LRQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
Score = 29.5 bits (67), Expect = 1.7
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + Q +Q + + +Q Q +
Sbjct: 470 RQGKLLQHSVDLLAEQLRTNRLRQGQSR 497
>gnl|CDD|225387 COG2831, FhaC, Hemolysin activation/secretion protein
[Intracellular trafficking and secretion].
Length = 554
Score = 30.0 bits (68), Expect = 1.0
Identities = 4/36 (11%), Positives = 14/36 (38%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ +QQQ ++ ++++ + +Q
Sbjct: 29 AEGNIRQQQDERARREELLPAPDVRLEQPDPAAPAV 64
Score = 29.6 bits (67), Expect = 1.5
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ + + +QQQ ++ ++++ + +Q
Sbjct: 20 SSAAALENPAEGNIRQQQDERARREELLPAPDVRLEQ 56
Score = 29.2 bits (66), Expect = 1.6
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +QQQ ++ ++++ + +Q
Sbjct: 29 AEGNIRQQQDERARREELLPAPDVRLEQPDPAAPAVD 65
Score = 29.2 bits (66), Expect = 1.8
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +QQQ ++ ++++ + +Q
Sbjct: 28 PAEGNIRQQQDERARREELLPAPDVRLEQPDPAAPAV 64
Score = 29.2 bits (66), Expect = 2.1
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +QQQ ++ ++++ + +Q
Sbjct: 25 LENPAEGNIRQQQDERARREELLPAPDVRLEQPD 58
Score = 28.9 bits (65), Expect = 2.4
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ + +QQQ ++ ++++ + +Q
Sbjct: 25 LENPAEGNIRQQQDERARREELLPAPDVRLEQ 56
Score = 28.9 bits (65), Expect = 2.4
Identities = 4/32 (12%), Positives = 15/32 (46%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + +QQQ ++ ++++ + +Q
Sbjct: 25 LENPAEGNIRQQQDERARREELLPAPDVRLEQ 56
Score = 28.5 bits (64), Expect = 3.1
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
S + + +QQQ ++ ++++ + +Q
Sbjct: 21 SAAALENPAEGNIRQQQDERARREELLPAPDVRLEQPDPAAPAV 64
>gnl|CDD|217552 pfam03429, MSP1b, Major surface protein 1B. The major surface
protein (MSP1) of the cattle pathogen Anaplasma is a
heterodimer comprised of MSP1a and MSP1b. This family is
the MSP1b chain. There MSP1 proteins are putative
adhesins for bovine erythrocytes.
Length = 726
Score = 30.1 bits (67), Expect = 1.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
PE+++ + L T + N+ A K+Q QQ+ Q Q Q QQQ
Sbjct: 676 PEELEQAAEGLATAV--NEASADGKIQSLNQQETQIAQGGQHAAQQQ 720
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/43 (16%), Positives = 27/43 (62%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E A Q+ + Q+ Q+++++Q + ++++++++++ +Q
Sbjct: 305 EMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQ 347
Score = 29.4 bits (66), Expect = 1.6
Identities = 4/36 (11%), Positives = 25/36 (69%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ + Q+ Q+++++Q + ++++++++++ +Q+
Sbjct: 313 RFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 28.6 bits (64), Expect = 2.5
Identities = 4/36 (11%), Positives = 25/36 (69%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + Q+ Q+++++Q + ++++++++++ +Q+
Sbjct: 313 RFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 28.6 bits (64), Expect = 2.7
Identities = 4/32 (12%), Positives = 23/32 (71%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ Q+++++Q + ++++++++++ +Q+
Sbjct: 317 NDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 28.6 bits (64), Expect = 2.7
Identities = 4/32 (12%), Positives = 23/32 (71%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ Q+++++Q + ++++++++++ +Q+
Sbjct: 317 NDPAQKLQEERKEQLAKLRKEEKEREKEYEQE 348
Score = 27.4 bits (61), Expect = 6.0
Identities = 5/43 (11%), Positives = 29/43 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ K++Q+ + Q+ Q+++++Q + ++++++++++ +
Sbjct: 304 KEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYE 346
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 29.7 bits (67), Expect = 1.1
Identities = 7/63 (11%), Positives = 13/63 (20%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + + N + +Q Q Q Q Q
Sbjct: 234 NDSYIADGNKFDKTPIPNTPNSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAA 293
Query: 224 QQS 226
Q+
Sbjct: 294 AQA 296
Score = 29.7 bits (67), Expect = 1.1
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
A+ + Q Q Q++ Q Q Q Q
Sbjct: 272 AAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQALQTAQNN 319
Score = 28.9 bits (65), Expect = 2.2
Identities = 9/51 (17%), Positives = 10/51 (19%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
T I N K Q Q Q Q Q +
Sbjct: 247 TPIPNTPNSLKALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAA 297
Score = 28.2 bits (63), Expect = 3.5
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ ++ LQ + QA + Q Q Q Q Q++
Sbjct: 250 PNTPNSLKALQAAL--ATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELAN 307
Query: 225 Q 225
Sbjct: 308 A 308
Score = 27.4 bits (61), Expect = 7.2
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 172 DNLQTQISNNDE-QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+L + + QA + Q Q Q++ Q Q Q Q
Sbjct: 268 ADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQALQTAQNNLAT 322
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.0 bits (68), Expect = 1.1
Identities = 8/54 (14%), Positives = 24/54 (44%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
E +K + + +E I +Q+ +Q+ + + + Q+ +++ Q +
Sbjct: 817 ERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/60 (11%), Positives = 26/60 (43%)
Query: 167 IKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
I+ + L+ +E + + ++Q+ +Q+ + + + Q+ +++ Q +
Sbjct: 812 IESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENK 871
Score = 27.7 bits (62), Expect = 5.6
Identities = 8/76 (10%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 153 DRMNLISHQCGPEDIKPNV--DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
D +N P+++ + + + ++ ++ M+ ++ + ++Q+ +Q+ +
Sbjct: 793 DGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKL 852
Query: 211 QQQQQQQQQQQQQQQS 226
+ + Q+ +++ Q +
Sbjct: 853 ELSEIQEAEEEIQNIN 868
Score = 27.7 bits (62), Expect = 6.1
Identities = 7/59 (11%), Positives = 25/59 (42%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
E + + L+ Q + + ++Q+ +Q+ + + + Q+ +++ Q +
Sbjct: 812 IESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINEN 870
Score = 27.3 bits (61), Expect = 8.2
Identities = 8/65 (12%), Positives = 27/65 (41%)
Query: 156 NLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
LI E+ + +Q + + + ++Q+ +Q+ + + + Q+ +++ Q
Sbjct: 806 ELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Query: 216 QQQQQ 220
+
Sbjct: 866 NINEN 870
>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
synthetase/uroporphyrin-III C-methyltransferase;
Reviewed.
Length = 656
Score = 30.1 bits (68), Expect = 1.2
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 171 VDNLQTQIS----NNDEQA---KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
VD L ++ ND Q ++K +Q Q Q Q Q + Q QQ +QQ
Sbjct: 348 VDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQ 407
Query: 224 QQ 225
Q
Sbjct: 408 YQ 409
Score = 29.3 bits (66), Expect = 1.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQS 226
Q Q +N+ + A+++++ +Q Q Q Q Q + Q QQ +QQ Q S
Sbjct: 357 QRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
Length = 956
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+K QQ + Q+ + Q + Q ++ +Q +Q+ ++
Sbjct: 867 VKAVQQDIHKLLQKAEAQAEAQARELIEQAKQEADEKLS 905
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N + + ++ QQ + + Q ++ ++ Q Q +QQ Q
Sbjct: 22 RNARADLER---ANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQ 72
>gnl|CDD|218774 pfam05843, Suf, Suppressor of forked protein (Suf). This family
consists of several eukaryotic suppressor of forked
(Suf) like proteins. The Drosophila melanogaster
Suppressor of forked [Su(f)] protein shares homology
with the yeast RNA14 protein and the 77-kDa subunit of
human cleavage stimulation factor, which are proteins
involved in mRNA 3' end formation. This suggests a role
for Su(f) in mRNA 3' end formation in Drosophila. The
su(f) gene produces three transcripts; two of them are
polyadenylated at the end of the transcription unit, and
one is a truncated transcript, polyadenylated in intron
4. It is thought that su(f) plays a role in the
regulation of poly(A) site utilisation and an important
role of the GU-rich sequence for this regulation to
occur.
Length = 271
Score = 29.6 bits (67), Expect = 1.2
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ ++ + + ++D K ++ QQ++ Q QQQQQ Q
Sbjct: 175 TLNPVTQATNSKKRPLEDDDSSKKPDKSRRLDQQRRSPSTNPAPQASGPQQQQQGQPA 232
Score = 28.4 bits (64), Expect = 2.9
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 15/89 (16%)
Query: 149 QFFGDR-----MNLISH----QCGPEDIKPNVDNLQTQISNN------DEQAKIKMQQQQ 193
+ F DR + I G ++ N TQ +N+ D+ + K + +
Sbjct: 144 ELFSDRYSFLDFDPIKKRELGSPGSQERPKATLNPVTQATNSKKRPLEDDDSSKKPDKSR 203
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ QQ++ Q QQQQQ Q
Sbjct: 204 RLDQQRRSPSTNPAPQASGPQQQQQGQPA 232
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 29.6 bits (67), Expect = 1.2
Identities = 7/41 (17%), Positives = 24/41 (58%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
E A K ++ ++Q++ ++ +Q Q ++ Q++ ++++
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDML 166
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 1.3
Identities = 4/58 (6%), Positives = 31/58 (53%)
Query: 167 IKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+K + L+ +I++ + K ++ + +++ + + + + + ++ +++ ++++
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER 349
>gnl|CDD|233777 TIGR02205, septum_zipA, cell division protein ZipA. This model
represents the full length of bacterial cell division
protein ZipA. The N-terminal hydrophobic stretch is an
uncleaved signal-anchor sequence. This is followed by an
unconserved, variable length, low complexity region, and
then a conserved C-terminal region of about 140 amino
acids (see pfam04354) that interacts with the
tubulin-like cell division protein FtsZ [Cellular
processes, Cell division].
Length = 284
Score = 29.5 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
Q S +DE+A I MQ QQQ Q QQ + + +
Sbjct: 89 QRDKSVDDEEASIPMQPTQQQYDMPQPNNVAQQTVEPRVAK 129
Score = 29.1 bits (65), Expect = 2.0
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
IS + K ++ Q QQQ Q QQ + + +S
Sbjct: 79 LPSISELVAYQRDKSVDDEEASIPMQPTQQQYDMPQPNNVAQQTVEPRVAKS 130
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 29.8 bits (67), Expect = 1.3
Identities = 10/43 (23%), Positives = 26/43 (60%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQA+I +Q Q+++ Q +Q+ Q + + ++ + ++Q++
Sbjct: 290 EQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKE 332
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.7 bits (67), Expect = 1.4
Identities = 8/61 (13%), Positives = 38/61 (62%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ K ++ L+ Q+S E + ++ +++ ++ ++ ++ Q++Q++++ +Q+ + +++
Sbjct: 181 KEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEER 240
Query: 225 Q 225
Sbjct: 241 L 241
Score = 29.3 bits (66), Expect = 2.1
Identities = 6/58 (10%), Positives = 32/58 (55%)
Query: 167 IKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+K + + +I + Q ++ + + +++ ++ ++ ++ Q++Q++++ +Q+
Sbjct: 176 LKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQE 233
Score = 28.2 bits (63), Expect = 4.5
Identities = 7/62 (11%), Positives = 38/62 (61%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
EDI+ ++ L+ ++ + +I+ +Q++++ +Q+ + +++ + ++++++ ++ + +
Sbjct: 199 EDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARL 258
Query: 225 QS 226
Sbjct: 259 LE 260
Score = 27.8 bits (62), Expect = 5.5
Identities = 2/43 (4%), Positives = 24/43 (55%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ KI+ ++ +++ ++ +++ + + ++ ++ ++ + +
Sbjct: 287 EEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 28.6 bits (64), Expect = 1.4
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQH 122
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQ 121
Score = 28.2 bits (63), Expect = 1.8
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQ 215
Q++++++++ ++QQQ + Q QQ QQ
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQ 121
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved
from plants to fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections
has a slightly different function. Mediator subunit
Hrs1/Med3 is a physical target for Cyc8-Tup1, a yeast
transcriptional co-repressor.
Length = 381
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 166 DIKPNVDNLQTQISNND--EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQ 213
+ + + I+ N+ + M Q Q QQ Q Q QQ
Sbjct: 303 SMNQGMTPSASMINLNNITPANILNMSLNLAFDLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 201 QQQQQQQQQQQQQQQQQQ 218
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 203 QQQQQQQQQQQQQQQQQQ 220
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 204 QQQQQQQQQQQQQQQQQQ 221
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 205 QQQQQQQQQQQQQQQQQQ 222
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 206 QQQQQQQQQQQQQQQQQQ 223
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 207 QQQQQQQQQQQQQQQQQQ 224
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
Score = 26.9 bits (59), Expect = 8.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 208 QQQQQQQQQQQQQQQQQQ 225
Q Q QQ Q Q QQ
Sbjct: 335 DLNQNQTPQQLQPQNQQN 352
>gnl|CDD|131827 TIGR02780, TrbJ_Ti, P-type conjugative transfer protein TrbJ. The
TrbJ protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbJ
is a homolog of the F-type TraE protein (which is
believed to be an inner membrane pore-forming protein,
TIGR02761) as well as the vir system VirB5 protein.
Length = 246
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +Q Q+ + Q Q Q +Q ++ QQQ
Sbjct: 191 QQSKQLQKLRALLAAQIQAQSTYMASEQAREDVTQQQR 228
Score = 27.4 bits (61), Expect = 6.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q+ + Q Q Q +Q ++ QQQ++Q
Sbjct: 195 QLQKLRALLAAQIQAQSTYMASEQAREDVTQQQRRQ 230
Score = 27.4 bits (61), Expect = 6.4
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ A + +Q Q+ + Q Q Q +Q ++ QQQ++
Sbjct: 185 GNQLAAQQSKQLQKLRALLAAQIQAQSTYMASEQAREDVTQQQRR 229
Score = 27.4 bits (61), Expect = 6.4
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+Q+ + Q Q Q +Q ++ QQQ++Q
Sbjct: 196 LQKLRALLAAQIQAQSTYMASEQAREDVTQQQRRQ 230
>gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional.
Length = 173
Score = 28.7 bits (64), Expect = 1.5
Identities = 13/45 (28%), Positives = 31/45 (68%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ EQAK+ Q+ +++ +Q+ ++ Q++ Q+ + + Q +QQQ+Q
Sbjct: 59 DDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQ 103
>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO. This family
contains the bacterial type III secretion protein YscO,
which is approximately 150 residues long. YscO has been
shown to be required for high-level expression and
secretion of the anti-host proteins V antigen and Yops
in Yersinia pestis.
Length = 152
Score = 28.5 bits (64), Expect = 1.5
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQ-----QQQQQQQQQQQQQQQQQQQQQ 225
E + +++Q +QQ Q+ ++ Q+ +Q+Q + Q Q+Q ++ +Q+
Sbjct: 98 EAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQYLEELEQE 145
Score = 27.8 bits (62), Expect = 3.3
Identities = 14/57 (24%), Positives = 35/57 (61%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N +L+ Q++ ++ + + Q+ +Q +QQ Q+ ++ Q++ + +Q+Q + Q Q+Q
Sbjct: 82 NEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAEAQAQRQY 138
>gnl|CDD|215974 pfam00529, HlyD, HlyD family secretion protein.
Length = 304
Score = 29.4 bits (66), Expect = 1.5
Identities = 5/44 (11%), Positives = 11/44 (25%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
E A+ ++ + Q Q Q ++
Sbjct: 107 EAARDNLRSALALLPISLGRIGASQATLGALLNNLQAQGLAARA 150
Score = 28.2 bits (63), Expect = 3.2
Identities = 6/45 (13%), Positives = 10/45 (22%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N A + + Q Q Q + Q +
Sbjct: 112 NLRSALALLPISLGRIGASQATLGALLNNLQAQGLAARAQLDEAY 156
Score = 28.2 bits (63), Expect = 3.9
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ DNL++ I + + Q Q Q + Q + Q
Sbjct: 104 AQLEAARDNLRSA----LALLPISLGRIGASQATLGALLNNLQAQGLAARAQLDEAYLQL 159
Query: 225 Q 225
Sbjct: 160 A 160
Score = 28.2 bits (63), Expect = 3.9
Identities = 3/43 (6%), Positives = 10/43 (23%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
A + + Q + + + + Q +
Sbjct: 94 LAASRGAASKAQLEAARDNLRSALALLPISLGRIGASQATLGA 136
Score = 27.5 bits (61), Expect = 5.5
Identities = 3/47 (6%), Positives = 10/47 (21%), Gaps = 4/47 (8%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQ----QQQQQQQQQQQQQQQQ 225
+A + + Q + + + + Q
Sbjct: 91 REALAASRGAASKAQLEAARDNLRSALALLPISLGRIGASQATLGAL 137
>gnl|CDD|234937 PRK01294, PRK01294, lipase chaperone; Provisional.
Length = 336
Score = 29.3 bits (66), Expect = 1.5
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ +I Q+ + + Q + + Q+ Q+QQ
Sbjct: 193 ERLRIAQDPSLSDAQKAARLAALEAQLPEDLRAALQESQRQQA 235
Score = 28.1 bits (63), Expect = 3.5
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + + Q + + Q+ Q+QQ QQ Q
Sbjct: 207 QKAARLAALEAQLPEDLRAALQESQRQQALLQQLAQ 242
Score = 28.1 bits (63), Expect = 4.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
D Q ++ + Q + + Q+ Q+QQ QQ Q Q S
Sbjct: 205 DAQKAARLAALEAQLPEDLRAALQESQRQQALLQQLAQLQASGAS 249
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q ++ Q+ Q+QQ QQ Q Q Q+ + + Q
Sbjct: 216 EAQLPEDLRAALQESQRQQALLQQLAQLQASGASPQELRLMRAQ 259
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 28.8 bits (65), Expect = 1.6
Identities = 7/57 (12%), Positives = 32/57 (56%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ + ++ + Q S EQAK + +Q ++ + + +++ ++ ++ + + + ++++
Sbjct: 61 AEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKER 117
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/55 (18%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 172 DNLQTQISNNDEQA-KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D Q +I+++ +A ++K + Q + +Q+ ++ ++Q + +Q +++ +Q +
Sbjct: 36 DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAE 90
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 28.4 bits (64), Expect = 1.7
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
V+ + I N +AK ++ + ++ + Q +QQ ++Q Q + + + +
Sbjct: 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADK 86
>gnl|CDD|106979 PHA00671, PHA00671, hypothetical protein.
Length = 135
Score = 28.5 bits (62), Expect = 1.7
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+SN E+A+ QQQ QQQ QQQ Q + + + Q+ Q+Q + QQQ+
Sbjct: 22 MSNKQEKAQRSAQQQAQQQAQQQADQAKAESDRLTQEYQKQTEAYQQQA 70
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+++K + L++ +S+ D + IK + +Q Q+ + QQ +Q QQ +Q
Sbjct: 597 DELKQKITKLRSTLSSEDVDS-IKDKTKQLQEASWKISQQAYKQGNSDNQQSEQ 649
>gnl|CDD|224425 COG1508, RpoN, DNA-directed RNA polymerase specialized sigma
subunit, sigma54 homolog [Transcription].
Length = 444
Score = 29.2 bits (66), Expect = 1.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 189 MQQQQQQQQQQQQQQQQQQQ 208
M + Q +Q Q+ Q QQ
Sbjct: 2 MAKLQLKQSQKLVLTPQLQQ 21
Score = 28.5 bits (64), Expect = 3.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQ 209
M + Q +Q Q+ Q QQ
Sbjct: 1 MMAKLQLKQSQKLVLTPQLQQ 21
Score = 28.1 bits (63), Expect = 3.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 207 QQQQQQQQQQQQQQQQQQQS 226
+ Q +Q Q+ Q QQS
Sbjct: 3 AKLQLKQSQKLVLTPQLQQS 22
Score = 27.3 bits (61), Expect = 7.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 188 KMQQQQQQQQQQQQQQQQQQ 207
+ Q +Q Q+ Q QQ
Sbjct: 2 MAKLQLKQSQKLVLTPQLQQ 21
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of
transcription [Cell division and chromosome partitioning
/ Transcription].
Length = 2005
Score = 29.6 bits (66), Expect = 1.8
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
N K +++++ + + Q + Q
Sbjct: 993 GNHLVLKSRLEKELPEDVLNAKFPDGTDYLAQYIIEDSSQ 1032
Score = 28.0 bits (62), Expect = 5.4
Identities = 5/53 (9%), Positives = 16/53 (30%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ +L T + + ++ A + + + Q + Q+
Sbjct: 1232 FDRLSLSTIMGHIEKIAINAIDTDSADSTDALNNNLNNTVENEANQTALEYQE 1284
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 29.2 bits (66), Expect = 1.8
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
ND + + + +Q + + ++ Q+ Q
Sbjct: 564 NDTKKRAAVAKQTSAMLSEIITEDREHLSLIQRHGWQ 600
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/47 (12%), Positives = 25/47 (53%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
LQ + N ++ + ++ + Q + Q++ ++ +++ ++ +Q+
Sbjct: 89 LQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135
Score = 26.7 bits (59), Expect = 9.0
Identities = 5/37 (13%), Positives = 19/37 (51%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + Q Q++ ++ + Q + Q++ ++ ++
Sbjct: 89 LQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEK 125
>gnl|CDD|205940 pfam13767, DUF4168, Domain of unknown function (DUF4168).
Length = 78
Score = 27.1 bits (61), Expect = 1.8
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+A + ++ +Q+ Q+ Q + + Q QQ+ Q +
Sbjct: 11 RAVLAIEPIRQEYYQEIQAAEDPAEAQALQQEAQTE 46
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 29.3 bits (65), Expect = 1.9
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N + Q+ +Q +++Q++++++Q +QQ + Q+Q +Q QQ+ Q
Sbjct: 272 NKRKQMLPQQQQQSFDQLVSPRKEQKREERRQLKQQLRDMQKQLRQLQQKYVQ 324
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q ++ + ++ KI + Q+ Q + + Q Q Q Q Q
Sbjct: 91 QQEVEQSVDEIKITLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASM 140
Score = 27.8 bits (62), Expect = 4.8
Identities = 10/54 (18%), Positives = 13/54 (24%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L Q Q Q Q Q Q Q ++ Q + S
Sbjct: 104 TLPNQEPAYYMQNHRSEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINS 157
Score = 27.4 bits (61), Expect = 7.4
Identities = 3/48 (6%), Positives = 16/48 (33%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ E +Q + + + + + + + + Q + ++
Sbjct: 149 NVPIEGINSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQAETEA 196
Score = 27.0 bits (60), Expect = 8.8
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
E I+P Q+ N I+ Q + +Q + + + +
Sbjct: 119 SEPIQPTQPQYQSPTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAAEI 173
Score = 27.0 bits (60), Expect = 8.8
Identities = 6/63 (9%), Positives = 19/63 (30%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P ++ S N I +Q + + + + + + + + Q
Sbjct: 132 PTQTNVASMTIEETQSPNVPIEGINSSSEQLRVELAELAAEIYSDASHRVELAKNFMEPQ 191
Query: 224 QQS 226
++
Sbjct: 192 AET 194
>gnl|CDD|182654 PRK10695, PRK10695, hypothetical protein; Provisional.
Length = 859
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
++S + ++ Q ++ + Q Q + QQ Q +QQ
Sbjct: 142 RLSLTPSRQTLRYQGEKLKLQAQLKGQQLTVSQLSVAAPEQQPP 185
Score = 27.6 bits (62), Expect = 6.2
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 170 NVDNLQTQISNNDEQA-KIKMQQQQQQQQ---QQQQQQQQQQQQQQQ---QQQQQQQQQQ 222
N+D+L +S E A K+++ +Q Q ++ + Q Q + QQ Q +Q
Sbjct: 125 NIDHLI--LSPWQEWAGKLRLSLTPSRQTLRYQGEKLKLQAQLKGQQLTVSQLSVAAPEQ 182
Query: 223 QQQ 225
Q
Sbjct: 183 QPP 185
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 28.9 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+E + KMQQ+QQ++ +QQ Q++QQ + ++Q
Sbjct: 148 NEADRKKMQQEQQREWLEQQVQERQQAKAAEKQ 180
Score = 27.3 bits (61), Expect = 7.9
Identities = 9/45 (20%), Positives = 28/45 (62%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ + N +A + +++Q+++ +++ ++Q QQ ++Q+ QQ+
Sbjct: 312 RQAINQARAAVLLERQERRLRKELRKQLDSANQQLAKEQKAQQEY 356
>gnl|CDD|236268 PRK08452, PRK08452, flagellar protein FlaG; Provisional.
Length = 124
Score = 28.1 bits (63), Expect = 2.0
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
IS QA Q ++ ++ Q Q ++ +Q
Sbjct: 5 ISGQGGQAPTSHTSINQTTSKEIERSNIQTTIDQSKKTIDGGNNEQ 50
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 29.1 bits (65), Expect = 2.0
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+A+ + Q+ Q Q Q Q +QQ Q ++
Sbjct: 129 PEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEE 172
Score = 28.3 bits (63), Expect = 3.0
Identities = 10/61 (16%), Positives = 16/61 (26%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
IK V + Q+Q ++ +Q Q+ Q Q
Sbjct: 97 AQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAV 156
Query: 225 Q 225
Q
Sbjct: 157 Q 157
Score = 27.9 bits (62), Expect = 4.8
Identities = 10/63 (15%), Positives = 16/63 (25%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
D + Q + + + Q+ Q Q Q Q +QQ
Sbjct: 109 ISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQV 168
Query: 224 QQS 226
Q
Sbjct: 169 QPE 171
Score = 27.1 bits (60), Expect = 8.1
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q+Q ++ +Q Q+ Q +
Sbjct: 101 IPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSA 150
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 28.9 bits (65), Expect = 2.0
Identities = 4/43 (9%), Positives = 20/43 (46%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + M++Q ++ ++ + + + + Q + + + +
Sbjct: 173 EEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAI 215
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF2h.
Eukaryotic translation initiation factor 3 (eIF3)
subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma;
eIF3-p40) is an evolutionarily non-conserved subunit of
the functional core that comprises eIF3a, eIF3b, eIF3c,
eIF3e, eIF3f, and eIF3h, and contains the MPN domain.
However, it lacks the canonical JAMM motif, and
therefore does not show catalytic isopeptidase
activity.Together with eIF3e and eIF3f, eIF3h stabilizes
the eIF3 complex. Results suggest that eIF3h regulates
cell growth and viability, and that over-expression of
the gene may provide growth advantage to prostate,
breast, and liver cancer cells. For example, EIF3h gene
amplification is common in late-stage prostate cancer
suggesting that it may be functionally involved in the
progression of the disease. It has been shown that
coamplification of MYC, a well characterized oncogene
involved in cell growth, differentiation, and apoptosis,
and EIF3h in patients with non-small cell lung cancer
(NSCLC) improves survival if treated with the Epidermal
Growth Factor Receptor Tyrosine Kinase Inhibitor
(EGFR-TKI), Gefitinib. Plant eIF3h is implicated in
translation of specific mRNAs.
Length = 266
Score = 28.8 bits (65), Expect = 2.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+ EQ K Q+ +QQ Q QQ Q+++ + Q++ +
Sbjct: 220 SQEQGKFNYYQRNLARQQAQIQQWLQKRKAENAQREAR 257
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 29.1 bits (66), Expect = 2.2
Identities = 8/67 (11%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 158 ISHQCGP---EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+S P ED++ + L+ ++ + +A + ++ + + + + + +
Sbjct: 412 LSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEA 471
Query: 215 QQQQQQQ 221
+ QQ+++
Sbjct: 472 RWQQEKE 478
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/60 (18%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 165 EDIKPNVDNLQTQISNNDEQ-----AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+ D+L+ Q+ N D+Q K+K ++ Q++ ++ +QQ + +++ + + +
Sbjct: 23 DKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQKKIEKLKQQNKTAKEEYEAKLADTK 82
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 28.4 bits (64), Expect = 2.3
Identities = 3/45 (6%), Positives = 29/45 (64%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
DE + + ++ ++Q+++++ + ++ + ++++ +++++++
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 27.3 bits (61), Expect = 4.7
Identities = 3/41 (7%), Positives = 25/41 (60%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
KI ++ + + +++ ++ ++Q+++++ + ++ + ++
Sbjct: 130 KIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKK 170
>gnl|CDD|163469 TIGR03757, conj_TIGR03757, integrating conjugative element protein,
PFL_4709 family. Members of this protein belong to
extended genomic regions that appear to be spread by
conjugative transfer [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 113
Score = 27.6 bits (62), Expect = 2.3
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 171 VDNLQTQISN----NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
+ L+ Q+S + +QA + +Q+ Q + Q++ Q Q
Sbjct: 29 PERLEAQLSAGLPADPQQAAAQARQRLQSPDWARLQRRLAQAYQ 72
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 28.6 bits (64), Expect = 2.3
Identities = 6/37 (16%), Positives = 21/37 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q+ ++ Q + + +QQ + Q++ + +++ +
Sbjct: 67 QSVRPQKLEELQGELSELKQQLSELQEELEDLEERIA 103
Score = 28.6 bits (64), Expect = 2.3
Identities = 5/38 (13%), Positives = 21/38 (55%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q+ ++ Q + + +QQ + Q++ + +++ + +
Sbjct: 70 RPQKLEELQGELSELKQQLSELQEELEDLEERIAELES 107
Score = 28.2 bits (63), Expect = 2.7
Identities = 4/38 (10%), Positives = 20/38 (52%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++ Q + + +QQ + Q++ + +++ + + +
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELESE 108
Score = 28.2 bits (63), Expect = 2.7
Identities = 6/37 (16%), Positives = 21/37 (56%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ ++ Q + + +QQ + Q++ + +++ + +S
Sbjct: 71 PQKLEELQGELSELKQQLSELQEELEDLEERIAELES 107
Score = 27.8 bits (62), Expect = 3.3
Identities = 6/37 (16%), Positives = 20/37 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q+ ++ Q + + +QQ + Q++ + +++
Sbjct: 66 VQSVRPQKLEELQGELSELKQQLSELQEELEDLEERI 102
Score = 27.8 bits (62), Expect = 3.8
Identities = 5/37 (13%), Positives = 19/37 (51%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ ++ Q + + +QQ + Q++ + +++
Sbjct: 68 SVRPQKLEELQGELSELKQQLSELQEELEDLEERIAE 104
Score = 27.8 bits (62), Expect = 3.9
Identities = 5/42 (11%), Positives = 21/42 (50%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q ++ +QQ + Q++ + +++ + + + + ++ Q
Sbjct: 77 LQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQL 118
Score = 27.4 bits (61), Expect = 5.3
Identities = 5/37 (13%), Positives = 20/37 (54%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q+ ++ Q + + +QQ + Q++ + +++ +
Sbjct: 70 RPQKLEELQGELSELKQQLSELQEELEDLEERIAELE 106
Score = 27.4 bits (61), Expect = 5.4
Identities = 5/36 (13%), Positives = 19/36 (52%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ Q+ ++ Q + + +QQ + Q++ + +++
Sbjct: 68 SVRPQKLEELQGELSELKQQLSELQEELEDLEERIA 103
Score = 27.0 bits (60), Expect = 7.2
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + Q+ ++ Q + + +QQ + Q++ + ++
Sbjct: 65 PVQSVRPQKLEELQGELSELKQQLSELQEELEDLEE 100
Score = 26.7 bits (59), Expect = 9.8
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q+ ++ Q + + +QQ + Q++ + +
Sbjct: 65 PVQSVRPQKLEELQGELSELKQQLSELQEELEDLEE 100
>gnl|CDD|220897 pfam10883, DUF2681, Protein of unknown function (DUF2681). This
family of proteins is found in bacteria. Proteins in
this family are typically between 81 and 117 amino acids
in length.
Length = 87
Score = 27.3 bits (61), Expect = 2.3
Identities = 5/41 (12%), Positives = 22/41 (53%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K+++ Q++ ++ Q + +Q ++ + + + + +Q+
Sbjct: 21 LYWKLKKAQRENRKLQAENEQLATEKAVAETEVKNAKVRQK 61
>gnl|CDD|182380 PRK10328, PRK10328, DNA binding protein, nucleoid-associated;
Provisional.
Length = 134
Score = 27.9 bits (62), Expect = 2.4
Identities = 5/27 (18%), Positives = 22/27 (81%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQ 209
E+ ++ ++++++++QQQ++ ++Q++
Sbjct: 31 EKFRVVTKERREEEEQQQRELAERQEK 57
Score = 27.1 bits (60), Expect = 4.2
Identities = 5/26 (19%), Positives = 21/26 (80%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQ 211
K ++ ++++++++QQQ++ ++Q++
Sbjct: 32 KFRVVTKERREEEEQQQRELAERQEK 57
>gnl|CDD|218895 pfam06097, DUF945, Bacterial protein of unknown function (DUF945).
This family consists of several hypothetical bacterial
proteins of unknown function.
Length = 459
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+L ++S QQ + + Q + +Q QQ Q Q
Sbjct: 379 SLDAKLSIPKPLVTELATQQAKLEGQTPEAAKQADQQVDMLAAMLQMQG 427
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 28.3 bits (63), Expect = 2.6
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+I + +S+N++ +Q QQ Q QQQ + ++ +Q+ QQ++ + Q+
Sbjct: 7 EINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 28.0 bits (62), Expect = 3.4
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++ +I+ +E+ + +Q + + +Q QQ Q QQQ + ++ +Q+ Q
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQ 55
Score = 26.8 bits (59), Expect = 8.4
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
N + + N+ + +M+ + +Q QQ Q QQQ + ++ +Q+ QQ++ +
Sbjct: 9 NKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVE 60
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 28.3 bits (63), Expect = 2.6
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q + + Q Q Q Q ++ QQ Q + + S
Sbjct: 115 NAMQDNSFHENFNNNYPGNYNNPSQDPYMNQAQSYNQNAYAKENQQAQPPKYENS 169
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 26.8 bits (60), Expect = 3.1
Identities = 2/36 (5%), Positives = 29/36 (80%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
K ++ ++ ++++++Q+++++++++ ++ ++ + +++
Sbjct: 44 KEEILEEIEEKKRKQEEEKERRKEARKAERAEARKR 79
Score = 25.3 bits (56), Expect = 8.9
Identities = 1/31 (3%), Positives = 25/31 (80%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ ++++++Q+++++++++ ++ ++ + ++
Sbjct: 49 EEIEEKKRKQEEEKERRKEARKAERAEARKR 79
>gnl|CDD|222714 pfam14369, zf-RING_3, zinc-finger.
Length = 34
Score = 25.6 bits (57), Expect = 3.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCH 50
Y C+QC R + ++ + C C
Sbjct: 3 YWCYQCDRFVRIAPSGDSDVCPRCG 27
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 27.9 bits (63), Expect = 3.2
Identities = 9/47 (19%), Positives = 30/47 (63%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ DE + K + ++++++ +QQQ ++++++ ++ ++QQQ+
Sbjct: 93 TLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQE 139
Score = 26.7 bits (60), Expect = 9.8
Identities = 6/31 (19%), Positives = 24/31 (77%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++++++ +QQQ ++++++ ++ ++QQQ+
Sbjct: 109 EEKEKELAARQQQLEEKEEELEELIEEQQQE 139
Score = 26.7 bits (60), Expect = 9.8
Identities = 6/31 (19%), Positives = 24/31 (77%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++++++ +QQQ ++++++ ++ ++QQQ+
Sbjct: 109 EEKEKELAARQQQLEEKEEELEELIEEQQQE 139
>gnl|CDD|220979 pfam11101, DUF2884, Protein of unknown function (DUF2884). Some
members in this bacterial family of proteins are
annotated as YggN which currently has no known function.
Length = 228
Score = 28.1 bits (63), Expect = 3.4
Identities = 11/72 (15%), Positives = 32/72 (44%)
Query: 149 QFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQ 208
Q G + + + + N+ + ++ ++ + +M+ Q Q + + + + +
Sbjct: 146 QSIGSILIALGSEMMSSEGGNNLTAFEQRMDGLGQEIEEEMESQSQALEAKADELCDRLE 205
Query: 209 QQQQQQQQQQQQ 220
+Q+QQ QQ+
Sbjct: 206 GLDEQEQQLQQR 217
>gnl|CDD|237467 PRK13676, PRK13676, hypothetical protein; Provisional.
Length = 114
Score = 27.2 bits (61), Expect = 3.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 180 NNDEQAK------IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
DE+AK +Q + QQ+Q Q+ +++QQ+ Q+ Q+ QQ
Sbjct: 33 KADEEAKKLFDEFRALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQ 79
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q K K ++ + ++QQ + +Q+Q ++ + Q Q
Sbjct: 42 QQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVTQSQSNK 84
>gnl|CDD|233899 TIGR02501, type_III_yscE, type III secretion system protein, YseE
family. Members of this family are found exclusively in
type III secretion appparatus gene clusters in bacteria.
Those bacteria with a protein from this family tend to
target animal cells, as does Yersinia pestis. This
protein is small (about 70 amino acids) and not well
characterized [Cellular processes, Pathogenesis].
Length = 67
Score = 26.2 bits (58), Expect = 3.6
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
L+ ++S+ D A+ ++Q + + ++Q + QQ Q+ Q
Sbjct: 3 QLEDRLSHADTAARAIIEQLEAALAELKEQLSRGGDPQQYQEWQLLA 49
>gnl|CDD|220871 pfam10759, DUF2587, Protein of unknown function (DUF2587). This is
a bacterial family of proteins with no known function.
Length = 168
Score = 27.8 bits (62), Expect = 3.7
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + QQ + Q +Q +++ Q Q +
Sbjct: 119 QTALFAQQMAARAQLEQMRRRALPPGVGIAPPGQPQGARGGPP 161
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 27.4 bits (61), Expect = 3.7
Identities = 7/57 (12%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 170 NVDNLQTQIS-NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N+ L+ E + +++++Q Q++Q+++ + +++Q++ ++
Sbjct: 4 NIRTLRAMARETYLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLI 60
>gnl|CDD|225519 COG2972, COG2972, Predicted signal transduction protein with a
C-terminal ATPase domain [Signal transduction
mechanisms].
Length = 456
Score = 28.2 bits (63), Expect = 3.8
Identities = 7/39 (17%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 176 TQISN--NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ 212
+IS N+ + +++ ++ +Q+Q + + + Q Q
Sbjct: 226 KEISETINEMEERLEYLIEENYSLEQEQLEAELRALQSQ 264
Score = 28.2 bits (63), Expect = 4.0
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
+ +M+++ + ++ +Q+Q + + + Q Q
Sbjct: 230 ETINEMEERLEYLIEENYSLEQEQLEAELRALQSQ 264
Score = 27.0 bits (60), Expect = 8.4
Identities = 5/50 (10%), Positives = 23/50 (46%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++I+ ++ + + +++ + ++ +Q+Q + + + Q Q
Sbjct: 215 SRIALGYLSELKEISETINEMEERLEYLIEENYSLEQEQLEAELRALQSQ 264
>gnl|CDD|206087 pfam13916, Phostensin_N, PP1-regulatory protein, Phostensin
N-terminal. Phostensin has been identified as a PP1
regulatory protein binding protein. This domain is
N-terminal to the PP1- and SH3-binding regions though
may carry an additional SH3-binding motif. It is likely
that Phostensin targets PP1 to the F-actin cytoskeleton.
Phostensin binds to actin and decreases the elongation
and depolymerisation rates of actin filament pointed
ends.
Length = 82
Score = 26.4 bits (58), Expect = 3.8
Identities = 4/17 (23%), Positives = 12/17 (70%)
Query: 189 MQQQQQQQQQQQQQQQQ 205
M+ ++++++ QQQ +
Sbjct: 57 MRLERERRRGQQQAGAE 73
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 27.2 bits (61), Expect = 3.9
Identities = 7/38 (18%), Positives = 23/38 (60%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++K+ ++ Q+ Q Q++ Q +QQ + +++ ++ +
Sbjct: 62 ELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAA 99
Score = 26.4 bits (59), Expect = 7.7
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ K+ ++ Q+ Q Q++ Q +QQ + +++ ++ + +
Sbjct: 59 AGKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEA 102
Score = 26.0 bits (58), Expect = 9.1
Identities = 8/45 (17%), Positives = 24/45 (53%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
D A +++ ++ Q+ Q Q++ Q +QQ + +++ ++ +
Sbjct: 56 DALAGKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAG 100
>gnl|CDD|151621 pfam11179, DUF2967, Protein of unknown function (DUF2967). This
family of proteins with unknown function appears to be
restricted to Drosophila.
Length = 284
Score = 28.0 bits (61), Expect = 4.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+Q+ Q QQ Q Q QQ++ S
Sbjct: 181 GKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYS 213
Score = 28.0 bits (61), Expect = 4.2
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+Q+ Q QQ Q Q QQ++ S
Sbjct: 181 GKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSS 214
Score = 28.0 bits (61), Expect = 4.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+Q+ Q QQ Q Q QQ++ S
Sbjct: 181 GKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSSS 215
Score = 27.6 bits (60), Expect = 4.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+Q+ Q QQ Q Q QQ++ S
Sbjct: 181 GKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSSSS 216
Score = 27.6 bits (60), Expect = 5.0
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+Q+ Q QQ Q Q QQ++ S
Sbjct: 181 GKQKQRPSQNIPPPQQHQLSPSSQAAAQQRKYSSSSS 217
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 28.4 bits (64), Expect = 4.1
Identities = 4/54 (7%), Positives = 25/54 (46%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
L + ND + + ++ ++ ++ ++ Q+ + +++ + + + ++
Sbjct: 158 FPQLLIEFEVNDISEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKP 211
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 4.1
Identities = 5/45 (11%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 EQAKIKMQQ--QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ +++ ++Q++ +++ +Q+ ++ +++++ ++ + +++ Q+
Sbjct: 528 EQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
Score = 27.5 bits (61), Expect = 6.3
Identities = 4/46 (8%), Positives = 29/46 (63%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q + + E+ + ++ +++ +Q+ ++ +++++ ++ + +++ Q+
Sbjct: 527 LEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
Score = 27.1 bits (60), Expect = 8.6
Identities = 5/42 (11%), Positives = 29/42 (69%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
N+ K+ +Q++ +++ +Q+ ++ +++++ ++ + +++ Q+
Sbjct: 531 NEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572
>gnl|CDD|219441 pfam07511, DUF1525, Protein of unknown function (DUF1525).
Length = 114
Score = 26.8 bits (60), Expect = 4.2
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 170 NVDNLQTQISN----NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
+ L+ ++S + +QA+ + +Q+ Q+ QQQ Q Q
Sbjct: 27 APERLEAELSAGLPADPQQAEAQARQRLNSPDWQRLQQQLAQAYQ 71
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.1 bits (63), Expect = 4.3
Identities = 8/54 (14%), Positives = 28/54 (51%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L+ + E+ + K +++ +Q+ ++Q + +Q+ + + Q + Q++ +
Sbjct: 223 QLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKE 276
Score = 28.1 bits (63), Expect = 4.6
Identities = 5/51 (9%), Positives = 32/51 (62%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+ L+ ++ E + +++Q + + ++++++ +++ +++ +Q+ ++Q +
Sbjct: 202 LSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAE 252
Score = 27.3 bits (61), Expect = 7.4
Identities = 4/42 (9%), Positives = 27/42 (64%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + K ++Q + + ++++++ +++ +++ +Q+ ++Q +
Sbjct: 211 ARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAE 252
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 27.9 bits (62), Expect = 4.5
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
N +N Q + +++ + QQ QQQ ++ + QQ ++ ++
Sbjct: 147 NKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEE 196
>gnl|CDD|181433 PRK08455, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 182
Score = 27.3 bits (61), Expect = 4.7
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQ 208
+ + E+ K Q+ Q+ Q Q+
Sbjct: 41 LMGSKEEEKENAQKPTQEVQANPPANSAQEA 71
Score = 27.0 bits (60), Expect = 7.3
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 202 QQQQQQQQQQQQQQQQQQQQQQQQS 226
++++ Q+ Q+ Q Q++
Sbjct: 47 EEKENAQKPTQEVQANPPANSAQEA 71
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 24.9 bits (55), Expect = 4.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 72 YKCDTCEKSFTNSQNLNTH 90
+ C C K+F++ Q L H
Sbjct: 2 HTCGVCGKTFSSLQALGGH 20
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 27.8 bits (62), Expect = 4.8
Identities = 4/41 (9%), Positives = 18/41 (43%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+++ ++ +Q + + + Q + + Q Q+ ++
Sbjct: 155 EDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEK 195
>gnl|CDD|221356 pfam11983, DUF3484, Domain of unknown function (DUF3484). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 65 to 81 amino acids in length. This domain is
found associated with pfam02491.
Length = 70
Score = 25.8 bits (57), Expect = 5.0
Identities = 8/55 (14%), Positives = 23/55 (41%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
VD+L +E + + + +Q +Q Q+Q ++ + ++ ++
Sbjct: 1 VDSLAQAAVTGEEVLRHQPVDFEFEQSVAPAPTVPYEQPQKQPTEESNEPEEPKE 55
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 26.8 bits (60), Expect = 5.0
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
D + +I+NN ++A+ +++Q + +QQ Q + + + +++ Q+
Sbjct: 29 DERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKL 81
>gnl|CDD|182398 PRK10350, PRK10350, hypothetical protein; Provisional.
Length = 145
Score = 27.3 bits (60), Expect = 5.1
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
NN Q ++ QQ+ Q Q Q QQ QQ+ QQ + Q + QQQ
Sbjct: 24 NNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQH 68
Score = 26.9 bits (59), Expect = 6.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ+ Q Q Q QQ QQ+ QQ + Q + QQQ Q+
Sbjct: 36 QQRMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQN 71
Score = 26.9 bits (59), Expect = 6.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+MQ Q Q QQ QQ+ QQ + Q + QQQ Q Q
Sbjct: 38 RMQTQMQTQQIQQKGMLNQQLKTQTRLQQQHLQNQIN 74
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 27.8 bits (62), Expect = 5.3
Identities = 7/46 (15%), Positives = 32/46 (69%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
++ E+A+ K ++++ +Q++ +++Q++Q + ++++Q+ +++
Sbjct: 388 VKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 27.7 bits (62), Expect = 5.4
Identities = 6/66 (9%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ------------QQQ 220
+ Q+ E+A + ++ ++ ++ + + +++ +++ + Q Q
Sbjct: 41 EEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQ 100
Query: 221 QQQQQS 226
+++Q
Sbjct: 101 IEREQE 106
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 26.8 bits (60), Expect = 5.5
Identities = 13/60 (21%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 168 KPNVDNLQTQISNNDEQAKI--KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K N LQ Q + ++ I K QQ + + ++ +Q+++++ ++++++++++++Q +QQ
Sbjct: 64 KINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQQ 123
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 27.6 bits (60), Expect = 5.6
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
EQ K K +Q++Q+ +Q++Q+ + + +Q++Q+ + ++
Sbjct: 180 EQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEK 222
Score = 27.6 bits (60), Expect = 6.3
Identities = 10/52 (19%), Positives = 31/52 (59%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ I + Q K + ++Q+ +Q++Q+ +Q++Q+ + + +Q++Q++
Sbjct: 167 KEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKT 218
Score = 27.6 bits (60), Expect = 6.4
Identities = 12/60 (20%), Positives = 32/60 (53%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E K + + + SN + I+++Q++Q+ + ++Q ++Q+ ++ +Q Q+ Q
Sbjct: 187 EQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQENHNQ 246
Score = 27.6 bits (60), Expect = 6.8
Identities = 11/58 (18%), Positives = 32/58 (55%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
K ++ +QI E+ K + ++Q+ +Q++Q+ + + +Q++Q+ + ++Q
Sbjct: 167 KEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQD 224
>gnl|CDD|221266 pfam11851, DUF3371, Domain of unknown function (DUF3371). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 125 to 142 amino acids in length.
Length = 131
Score = 27.0 bits (60), Expect = 5.6
Identities = 6/30 (20%), Positives = 8/30 (26%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
IK + Q + Q Q Q
Sbjct: 26 IKQEPQLEDNQCPQDLYPHSSQPDLPPPTT 55
>gnl|CDD|227671 COG5380, LimK, Lipase chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 283
Score = 27.7 bits (61), Expect = 5.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
++ +I +Q+Q+ Q Q QQ Q Q + +
Sbjct: 177 VQEERIFIQRQEATAQLLPQLQQAGQGPTQIRLARVA 213
>gnl|CDD|218653 pfam05603, DUF775, Protein of unknown function (DUF775). This
family consists of several eukaryotic proteins of
unknown function.
Length = 193
Score = 27.3 bits (61), Expect = 5.9
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 170 NVDNLQTQISNNDEQAK--IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+D+ N A+ I ++ Q QQ +Q Q Q QQ Q +Q
Sbjct: 85 MLDDGNPATGNPQSTAQIGISIEPLDQLAQQLAALKQSQSGSQAAQQNAQVTSVSTKQ 142
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 27.8 bits (61), Expect = 5.9
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 21/66 (31%)
Query: 67 MKPRPYKCDT--CEKSFTNSQNLNTHQL-------------------IHSGIRPFKCTTC 105
+PYKC C K + N L H L + +P++C C
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVC 404
Query: 106 DKSFVN 111
DK + N
Sbjct: 405 DKRYKN 410
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 27.3 bits (60), Expect = 6.0
Identities = 6/42 (14%), Positives = 32/42 (76%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
EQ + Q++++ +++ + ++++++ +++ Q++Q++++++Q
Sbjct: 126 EQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 27.0 bits (59), Expect = 8.6
Identities = 10/61 (16%), Positives = 41/61 (67%), Gaps = 6/61 (9%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQ------QQQQQQQQQQQQQQQQ 225
D+++ + S Q +I+ +Q++++ +++ + ++++++ Q++Q++++++Q ++Q
Sbjct: 113 DDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Query: 226 S 226
S
Sbjct: 173 S 173
Score = 26.6 bits (58), Expect = 9.2
Identities = 6/43 (13%), Positives = 30/43 (69%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
E+ + +M+ ++++++ +++ Q++Q++++++Q ++Q +
Sbjct: 136 EELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEH 178
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General
function prediction only].
Length = 231
Score = 27.3 bits (61), Expect = 6.0
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQ 210
PE+IK + + DE +M + +++ Q+ Q+ Q++Q
Sbjct: 181 PEEIKAELKRAAEAAAGLDE----EMSEIRKEIQEAQEYFDQREQAL 223
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.1 bits (60), Expect = 6.1
Identities = 5/48 (10%), Positives = 28/48 (58%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+S + +++ K ++QQ +++Q+ +++ + ++ + + ++ ++
Sbjct: 11 HLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
Score = 26.8 bits (59), Expect = 8.3
Identities = 7/49 (14%), Positives = 29/49 (59%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
D+L + ++E+A +QQ +++Q+ +++ + ++ + + ++ ++
Sbjct: 10 DHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 27.6 bits (61), Expect = 6.1
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 176 TQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
T+I N+ E + +Q+QQ+Q+Q ++ +Q Q+++ Q++++
Sbjct: 416 TKIVNSQESPQEMVQRQQEQEQALKESIKQIQEERAISNFQKREE 460
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 27.5 bits (61), Expect = 6.2
Identities = 7/50 (14%), Positives = 22/50 (44%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + +A+ K Q + +Q+++ + Q + ++QQ+ +
Sbjct: 56 KLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQIDRTFRKQQRDLNKA 105
>gnl|CDD|204565 pfam10956, DUF2756, Protein of unknown function (DUF2756). Some
members in this family of proteins are annotated yhhA
however currently no function is known. The family
appears to be restricted to Enterobacteriaceae.
Length = 104
Score = 26.5 bits (58), Expect = 6.3
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
NN Q ++ QQ+ Q Q Q QQ QQ+ QQ Q Q + QQQ
Sbjct: 22 TMNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLQTQTRLQQQH 68
>gnl|CDD|188784 cd09400, LIM_like_1, LIM domain in proteins of unknown function.
LIM domain in proteins of unknown function: LIM domains
are identified in a diverse group of proteins with wide
variety of biological functions, including gene
expression regulation, cell fate determination,
cytoskeleton organization, tumor formation, and
development. LIM domains function as adaptors or
scaffolds to support the assembly of multimeric protein
complexes. They perform their functions through
interactions with other protein partners. The LIM
domains are 50-60 amino acids in size and share two
characteristic highly conserved zinc finger motifs. The
two zinc fingers contain eight conserved residues,
mostly cysteines and histidines, which coordinately
bond to two zinc atoms. The consensus sequence of LIM
domain has been defined as
C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,
21)-C-x(2,3)-[CHD] (where X denotes any amino acid).
Length = 61
Score = 25.5 bits (56), Expect = 6.6
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 27 KCHQCQRLIFLSANAGVHKCEY---CHKVFDQQSSLLSHNCPQMKPRPYKCDTC 77
C C +FL+ + Y C K L + + + Y C+TC
Sbjct: 4 PCASCGLPVFLAERLLIEGKVYHRTCFKCARCGVQLTPGSFYETEYGSYCCETC 57
>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones].
Length = 320
Score = 27.4 bits (60), Expect = 6.6
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
V N ++ K + QQ+++ +Q +Q Q + + QQ
Sbjct: 29 AGVVNAGAVAKVGAQEISAKEKLNAQQKERNIALEQLGEQLLLLQAAAELGIKISQQ 85
>gnl|CDD|131526 TIGR02473, flagell_FliJ, flagellar export protein FliJ. Members of
this family are the FliJ protein found, in nearly every
case, in the midst of other flagellar biosynthesis genes
in bacgterial genomes. Typically the fliJ gene is found
adjacent to the gene for the flagellum-specific ATPase
FliI. Sequence scoring in the gray zone between trusted
and noise cutoffs include both probable FliJ proteins
and components of bacterial type III secretion systems.
Length = 141
Score = 26.5 bits (59), Expect = 6.7
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQ-------QQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ L+TQ+ + + QQ ++ Q+ +Q Q+ QQQQQ+ QQ
Sbjct: 30 ERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQELALLQQ 89
Query: 225 Q 225
+
Sbjct: 90 E 90
>gnl|CDD|225616 COG3074, COG3074, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 79
Score = 25.7 bits (56), Expect = 6.7
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
E+ K K Q+ Q Q Q++ +++ +Q +++Q Q++ ++
Sbjct: 28 EELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71
>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904). This
family consists of several bacterial and archaeal
hypothetical proteins of unknown function.
Length = 72
Score = 25.7 bits (57), Expect = 6.7
Identities = 6/53 (11%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 172 DNLQTQISNN-DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ L+++I + A ++M+ ++ +++ +Q ++ ++ +++ ++ ++++ Q
Sbjct: 7 EELESKIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLKEERNAWQ 59
>gnl|CDD|225656 COG3114, CcmD, Heme exporter protein D [Intracellular trafficking
and secretion].
Length = 67
Score = 25.5 bits (56), Expect = 6.8
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQ 214
+Q++ + +Q+ ++ + + QQQ
Sbjct: 39 LQRRAILRGVARQRAREARLRAAQQQ 64
Score = 25.1 bits (55), Expect = 9.9
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q++ + +Q+ ++ + + QQQ++
Sbjct: 40 QRRAILRGVARQRAREARLRAAQQQEA 66
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 27.4 bits (60), Expect = 6.9
Identities = 8/56 (14%), Positives = 24/56 (42%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + I++ +E + ++ Q +Q+Q +Q Q + ++ +Q
Sbjct: 88 ELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQ 143
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 26.9 bits (60), Expect = 7.0
Identities = 5/36 (13%), Positives = 26/36 (72%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
E+ + + + Q+Q ++++Q+++++ ++ Q+ ++++
Sbjct: 123 EEVRQRAELQRQLAEKEKQEKEEKLRELAQRAREER 158
Score = 26.5 bits (59), Expect = 8.8
Identities = 8/57 (14%), Positives = 35/57 (61%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+I L + + +A+ +++Q+ + Q+Q ++++Q+++++ ++ Q+ ++++
Sbjct: 102 EINDKFAKLSEALYIAERKAREEVRQRAELQRQLAEKEKQEKEEKLRELAQRAREER 158
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 27.0 bits (59), Expect = 7.2
Identities = 7/43 (16%), Positives = 37/43 (86%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+E+A+ + +++ ++++++ +++ +++++Q+Q++Q++ Q+Q+++
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEE 114
Score = 26.6 bits (58), Expect = 9.7
Identities = 6/42 (14%), Positives = 35/42 (83%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + Q++++ ++++++ +++ +++++Q+Q++Q++ Q+Q++
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKE 113
>gnl|CDD|180234 PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.
Length = 156
Score = 26.7 bits (60), Expect = 7.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 189 MQQQQQQQQQQQQQQQQ 205
Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.7 bits (60), Expect = 8.0
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 189 MQQQQQQQQQQQQQQQQQQ 207
+ +Q+ QQ QQ + Q+
Sbjct: 138 LYEQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 192 QQQQQQQQQQQQQQQQQ 208
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 193 QQQQQQQQQQQQQQQQQ 209
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 194 QQQQQQQQQQQQQQQQQ 210
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 195 QQQQQQQQQQQQQQQQQ 211
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 196 QQQQQQQQQQQQQQQQQ 212
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 197 QQQQQQQQQQQQQQQQQ 213
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 198 QQQQQQQQQQQQQQQQQ 214
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 199 QQQQQQQQQQQQQQQQQ 215
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 200 QQQQQQQQQQQQQQQQQ 216
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 201 QQQQQQQQQQQQQQQQQ 217
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 202 QQQQQQQQQQQQQQQQQ 218
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 203 QQQQQQQQQQQQQQQQQ 219
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 204 QQQQQQQQQQQQQQQQQ 220
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 205 QQQQQQQQQQQQQQQQQ 221
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 206 QQQQQQQQQQQQQQQQQ 222
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 207 QQQQQQQQQQQQQQQQQ 223
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 208 QQQQQQQQQQQQQQQQQ 224
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
Score = 26.3 bits (59), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 209 QQQQQQQQQQQQQQQQQ 225
+Q+ QQ QQ + Q+
Sbjct: 140 EQRLQQAQQAAAEAQEA 156
>gnl|CDD|150787 pfam10154, DUF2362, Uncharacterized conserved protein (DUF2362).
This is a family of proteins conserved from nematodes to
humans. The function is not known.
Length = 501
Score = 27.5 bits (61), Expect = 7.4
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ + Q Q + +Q +Q
Sbjct: 1 QENVSELHGQLMLLQMDPCFKFLDSEQDLKQSLGG 35
Score = 27.5 bits (61), Expect = 7.4
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + Q Q + +Q +Q
Sbjct: 1 QENVSELHGQLMLLQMDPCFKFLDSEQDLKQSLGG 35
Score = 27.1 bits (60), Expect = 9.1
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ + Q Q + +Q +Q
Sbjct: 1 QENVSELHGQLMLLQMDPCFKFLDSEQDLKQSLGG 35
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 24.1 bits (52), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
+KC C KSF++ L H H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|218161 pfam04589, RFX1_trans_act, RFX1 transcription activation region.
The RFX family is a family of winged-helix DNA binding
proteins. RFX1 is a regulatory factor essential for
expression of MHC class II genes. This region is to
found N terminal to the RFX DNA binding region
(pfam02257) in some mammalian RFX proteins, and is
thought to activate transcription when associated with
DNA. Deletion analysis has identified the region 233-351
in human RFX1 as being required for maximal activation.
Length = 150
Score = 26.5 bits (58), Expect = 7.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
QA + QQ+ Q Q + QQ + QQ QQ QQ
Sbjct: 23 QAPVPASQQRSVVQATSQTKGGPVQQLPVHRVQQVPQQVQQ 63
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 26.6 bits (59), Expect = 7.8
Identities = 6/57 (10%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 170 NVDNLQTQISNNDE--QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ +Q ++ + Q KM+ + + + + ++++ ++QQ+ ++ +
Sbjct: 59 ELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNR 115
>gnl|CDD|233897 TIGR02499, HrpE_YscL_not, type III secretion apparatus protein,
HrpE/YscL family. This model is related to pfam06188,
but is broader. pfam06188 describes HrpE-like proteins,
components of bacterial type III secretion systems
primarily in bacteria that infect plants. This model
includes also the homologous proteins of animal
pathogens, such as YscL of Yersinia pestis. This model
excludes the related protein FliH of the bacterial
flagellar apparatus (see pfam02108) [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 166
Score = 26.9 bits (60), Expect = 7.8
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QA+ + +Q+ + +++ + +Q +Q +Q Q+
Sbjct: 13 AQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQE 55
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E A+I Q + Q ++Q +Q++ Q ++++++ Q+ +Q+
Sbjct: 51 AEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQE 92
>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper.
Length = 54
Score = 24.9 bits (55), Expect = 7.9
Identities = 5/34 (14%), Positives = 23/34 (67%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
E+ K + ++ +++ ++ +++ Q +Q+ +Q +++
Sbjct: 21 EKKKQREEELEERVKELEEENAQLRQKVEQLEKE 54
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 27.2 bits (60), Expect = 8.3
Identities = 17/33 (51%), Positives = 17/33 (51%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q Q QQQQ Q QQ Q QQ
Sbjct: 134 QQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNP 166
Score = 26.8 bits (59), Expect = 9.7
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q QQ Q Q QQQQ Q QQ Q QQ
Sbjct: 134 QQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPP 167
>gnl|CDD|221245 pfam11822, DUF3342, Domain of unknown function (DUF3342). This
family of proteins are functionally uncharacterized.
This family is found in bacteria. This presumed domain
is typically between 170 to 303 amino acids in length.
The N-terminal half of this family is a BTB-like domain.
Length = 302
Score = 27.0 bits (60), Expect = 8.3
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 42 GVHKCEYCHKVFDQQSSLLSHNCPQ 66
G+ +C C +F Q CP
Sbjct: 175 GLRRCGLCGTLFTQGELKRLECCPG 199
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 27.2 bits (60), Expect = 8.9
Identities = 7/65 (10%), Positives = 29/65 (44%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
QC ++ + L++++ EQ + ++ + +++ Q +Q + + +
Sbjct: 177 QCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLE 236
Query: 221 QQQQQ 225
++ ++
Sbjct: 237 EELKR 241
>gnl|CDD|185368 PRK15471, PRK15471, chain length determinant protein WzzB;
Provisional.
Length = 325
Score = 27.0 bits (60), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
D+L+TQ EQ ++++Q Q+ Q Q + Q QQ Q Q
Sbjct: 180 DSLETQEVVAQEQKDLRIKQIQEALQYANQANITKPQIQQTQDVTQ 225
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 27.3 bits (61), Expect = 9.5
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 217
EQA+++ + + + + + ++ +++Q+ + + +Q Q
Sbjct: 737 EQAELRAKALRIEAEAELEKLRKRQELELEYEQAQ 771
>gnl|CDD|240425 PTZ00464, PTZ00464, SNF-7-like protein; Provisional.
Length = 211
Score = 26.7 bits (59), Expect = 9.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + +Q+ Q QQ++ Q QQ QQQ Q Q
Sbjct: 55 TQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQ 91
Score = 26.7 bits (59), Expect = 9.7
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 139 PKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQ 198
PKP + S+ G R ++ + D + Q Q + Q++ K + Q QQ+
Sbjct: 12 PKP-TLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQK 70
Query: 199 QQQQQQQQQQQQQQQQQQQQQ 219
+ Q QQ QQQ Q Q
Sbjct: 71 RMYQNQQDMMMQQQFNMDQLQ 91
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 26.2 bits (58), Expect = 9.8
Identities = 3/38 (7%), Positives = 24/38 (63%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
I+ ++++ ++ Q+ + ++ Q+++ ++ +++ ++
Sbjct: 80 GPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEE 117
>gnl|CDD|218174 pfam04612, T2SM, Type II secretion system (T2SS), protein M. This
family of membrane proteins consists of Type II
secretion system protein M sequences from several
Gram-negative (diderm) bacteria. The precise function of
these proteins is unknown, though in Vibrio cholerae,
the T2SM (EpsM) protein interacts with the T2SL (EpsL)
protein, and also forms homodimers.
Length = 159
Score = 26.5 bits (59), Expect = 9.8
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q++ + Q++ Q +Q Q+Q + + + +
Sbjct: 40 SQRRARAQRRLQAARQLLAWLQEQAPEIRALRGAGA 75
>gnl|CDD|221630 pfam12542, CWC25, Pre-mRNA splicing factor. This domain family is
found in eukaryotes, and is approximately 100 amino
acids in length. The family is found in association with
pfam10197. There is a single completely conserved
residue Y that may be functionally important. Cwc25 has
been identified to associate with pre-mRNA splicing
factor Cef1/Ntc85, a component of the Prp19-associated
complex (NTC) involved in spliceosome activation. Cwc25
is neither tightly associated with NTC nor required for
spliceosome activation, but is required for the first
catalytic reaction.
Length = 95
Score = 25.4 bits (56), Expect = 9.8
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 175 QTQISNNDEQAKI------KMQQQQQQQQQQQQQQ 203
S ND K+ +++++Q+ +Q
Sbjct: 60 SNANSANDTWNKLREDPLLAIKKREQEARQALMNN 94
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 26.9 bits (60), Expect = 9.9
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+SNN+ Q +++Q+ +++ ++ + + Q Q +++ + +Q +
Sbjct: 170 LELLSNNNRQELLRLQRDLLKKRIERLEAELQALQNAINRKRLAESEQAVE 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.126 0.387
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,064,159
Number of extensions: 857588
Number of successful extensions: 23865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12833
Number of HSP's successfully gapped: 2682
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)