RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14244
(226 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 80.2 bits (199), Expect = 1e-19
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ---LIHSGIRPFK 101
+C CHK F + L HN +P++C C K + +NL H+ ++ + F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 102 CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
C+ C ++F + L H M SH PY+C CSQ F + +L SH
Sbjct: 69 CSVCQETFRR-------------RMELRLH--MVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Query: 161 Q 161
Sbjct: 114 M 114
Score = 72.9 bits (180), Expect = 6e-17
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+C TC K F + L H H+G +PF+C C K + K NL
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFR-------------KENLL 52
Query: 130 QH-SCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
+H + + + + C C + F RM L H
Sbjct: 53 EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHM 86
Score = 71.4 bits (176), Expect = 2e-16
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 32/122 (26%)
Query: 26 YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKP------ 69
+C C + VH +C C K + ++ +LL H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH---EARNCMNRSE 64
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+ + C C+++F L H + H+G P+KC++C + F+ K +L
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ-------------KKDLQ 111
Query: 130 QH 131
H
Sbjct: 112 SH 113
Score = 50.2 bits (121), Expect = 2e-08
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 11 FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH-------------KCEYCHKVF 53
F + L H + ++C +C + F N H C C + F
Sbjct: 17 FLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF 76
Query: 54 DQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IHSG 96
++ L H PYKC +C + F ++L +H + +HSG
Sbjct: 77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
SG +C TC K F++ K L H H KP++C +C + +
Sbjct: 2 SSGSSGVECPTCHKKFLS-------------KYYLKVH--NRKHTGEKPFECPKCGKCYF 46
Query: 153 DRMNLISHQ 161
+ NL+ H+
Sbjct: 47 RKENLLEHE 55
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 81.3 bits (202), Expect = 2e-19
Identities = 45/147 (30%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 26 YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
Y C +C + S + H KC C K F + L H +PYKC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 76 TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMN 135
C KSF+ NL HQ H+G +P+ C C KSF ++L H
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ-------------LAHLRAH--QR 126
Query: 136 SHF-PKPYQCDRCSQFFGDRMNLISHQ 161
+H KPY+C C + F NL +HQ
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 79.8 bits (198), Expect = 7e-19
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 38/153 (24%)
Query: 26 YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPR----- 70
YKC +C + + H KC C K F Q+++L +H R
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ------RTHTGE 103
Query: 71 -PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
PY C C KSF+ +L HQ H+G +P+KC C KSF + NL
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR-------------EDNLH 150
Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
H +H KPY+C C + F R L HQ
Sbjct: 151 TH--QRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 69.8 bits (172), Expect = 5e-15
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 53 FDQQSSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCD 106
SS ++ PY C C KSF+ S +L HQ H+G +P+KC C
Sbjct: 3 EFGSSSSVAQA------ALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG 56
Query: 107 KSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
KSF + K +L +H +H KPY+C C + F R NL +HQ
Sbjct: 57 KSFSD-------------KKDLTRH--QRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 55.5 bits (135), Expect = 6e-10
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF- 138
S S + + G +P+ C C KSF ++ +LA+H +H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSF-SR------------SDHLAEH--QRTHTG 46
Query: 139 PKPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F D+ +L HQ
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQ 69
Score = 50.9 bits (123), Expect = 3e-08
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 11 FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQ 56
FSQ+ L H + Y C +C + A+ H KC C K F ++
Sbjct: 87 FSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRE 146
Query: 57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+L +H +PYKC C KSF+ LN HQ H+G +
Sbjct: 147 DNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 75.9 bits (188), Expect = 2e-18
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 28/108 (25%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPR------PYKCDTCEKSFTNSQNLNTHQLIHSGI 97
HKCE C K F ++ L +H R PYKC TC+ + +S +LN H IHS
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM------RCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 98 RPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
RPFKC C + N S L H + SH
Sbjct: 63 RPFKCQICPYASRN-------------SSQLTVH--LRSHTGDSGPSS 95
Score = 72.8 bits (180), Expect = 3e-17
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 16/93 (17%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
P+KC+ C K F+ L TH H+G++P+KC TCD + + S+L
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAAD-------------SSSLN 53
Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
+H + H +P++C C + L H
Sbjct: 54 KH--LRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 54.0 bits (131), Expect = 4e-10
Identities = 19/77 (24%), Positives = 22/77 (28%), Gaps = 18/77 (23%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQ 85
YKC C SSL H RP+KC C + NS
Sbjct: 37 YKCKTCD------------------YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78
Query: 86 NLNTHQLIHSGIRPFKC 102
L H H+G
Sbjct: 79 QLTVHLRSHTGDSGPSS 95
Score = 43.2 bits (103), Expect = 4e-06
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 16/69 (23%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
P KC C K F ++ K L H M H KPY+C C
Sbjct: 3 SGSSGPHKCEVCGKCF-SR------------KDKLKTH--MRCHTGVKPYKCKTCDYAAA 47
Query: 153 DRMNLISHQ 161
D +L H
Sbjct: 48 DSSSLNKHL 56
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 75.6 bits (187), Expect = 3e-18
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+P++C C ++F+ S +L TH H+G +PF C C + F +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF-AR------------SDERK 48
Query: 130 QHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
+H + P D+ + +L +
Sbjct: 49 RH--RDIQHILPILEDKVEELLSKNYHLENEV 78
Score = 64.4 bits (158), Expect = 4e-14
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+C C + F + L +H ++ +P+ CD C + F S H+ I I P
Sbjct: 4 FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILP 58
Query: 100 FKCTTCDKSF 109
++
Sbjct: 59 ILEDKVEELL 68
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.5 bits (184), Expect = 2e-17
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 29/128 (22%)
Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMK---PRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
C + C K+F S++ H + PR + C C K+F S L HQL+H+G +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKH----LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 99 PFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFGD 153
PF+CT C K F NL H + H +PY C C++ F
Sbjct: 62 PFQCTFEGCGKRFS-------------LDFNLRTH--VRIHTGDRPYVCPFDGCNKKFAQ 106
Query: 154 RMNLISHQ 161
NL SH
Sbjct: 107 STNLKSHI 114
Score = 63.7 bits (156), Expect = 2e-13
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 67 MKPRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYT 124
M+PR C C K F ++ + H H G R C C K+FV
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFV-------------E 46
Query: 125 KSNLAQHSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
S L +H H KP+QC C + F NL +H
Sbjct: 47 SSKLKRH--QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84
Score = 51.0 bits (123), Expect = 1e-08
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 27/113 (23%)
Query: 11 FSQQTLLC----IHGNDNAYKCHQCQRLIFLSANAGVH----------KCEY--CHKVFD 54
F + + HG + C +C + S+ H +C + C K F
Sbjct: 17 FRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 55 QQSSLLSHNCPQMK----PRPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFK 101
+L +H ++ RPY C C K F S NL +H L H+ + +
Sbjct: 76 LDFNLRTH----VRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 72.9 bits (180), Expect = 3e-17
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
C+ C K F + +LN H+L HSG +P+ C C F + K ++
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF-KR------------KDRMSY 53
Query: 131 HSCMNSH---FPKPYQCDRCSQFFGDRMNLISH 160
H + SH KPY C C + F +L H
Sbjct: 54 H--VRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 64.8 bits (159), Expect = 4e-14
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFK 101
CE C K+F L H +PY C C F ++ H H G +P+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 102 CTTCDKSF 109
C +C K F
Sbjct: 68 CQSCGKGF 75
Score = 43.6 bits (104), Expect = 2e-06
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 27/77 (35%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKS 80
Y C C F ++ + H +PY C +C K
Sbjct: 36 YSCPVCG------------------LRFKRKDRMSYH---VRSHDGSVGKPYICQSCGKG 74
Query: 81 FTNSQNLNTH-QLIHSG 96
F+ +LN H + +HSG
Sbjct: 75 FSRPDHLNGHIKQVHSG 91
Score = 27.5 bits (62), Expect = 1.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
C+ C + F D +L H+
Sbjct: 6 SGVACEICGKIFRDVYHLNRHK 27
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 72.6 bits (179), Expect = 2e-16
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 42/154 (27%)
Query: 19 IHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKC 74
IHG + CH C + F Q L+ H M+ +P+KC
Sbjct: 28 IHGERKEFVCHWG-------------GCSRELRPFKAQYMLVVH----MRRHTGEKPHKC 70
Query: 75 DT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQ 130
C KS++ +NL TH H+G +P+ C C K+F N S+ A+
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN-------------ASDRAK 117
Query: 131 HSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
H +H KPY C C++ + D +L H
Sbjct: 118 HQ-NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 69.9 bits (172), Expect = 2e-15
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 28/130 (21%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMK---PRPYKCDTCE-----KSFTNSQNLNTHQLIHSG 96
+ + C + FD Q L+ H + + + C + F L H H+G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 97 IRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC--DRCSQFF 151
+P KCT C KS+ NL H + SH KPY C + CS+ F
Sbjct: 65 EKPHKCTFEGCRKSYS-------------RLENLKTH--LRSHTGEKPYMCEHEGCSKAF 109
Query: 152 GDRMNLISHQ 161
+ + HQ
Sbjct: 110 SNASDRAKHQ 119
Score = 51.8 bits (125), Expect = 1e-08
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH---QLIHSGIRPFKCTTCD-----KSFVNQINPTSTHTP 121
+ D C + F + + L H + IH + F C + F
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPF-KA--------- 51
Query: 122 TYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFGDRMNLISHQ 161
+ L H M H KP++C C + + NL +H
Sbjct: 52 ---QYMLVVH--MRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 43.7 bits (104), Expect = 6e-06
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 15/62 (24%)
Query: 45 KCEY--CHKVFDQQSSLLSHNCPQMKPR------PYKCDT--CEKSFTNSQNLNTHQLIH 94
CE+ C K F S H + R PY C C K +T+ +L H
Sbjct: 99 MCEHEGCSKAFSNASDRAKH-----QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 95 SG 96
G
Sbjct: 154 HG 155
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 71.3 bits (176), Expect = 2e-16
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 21/117 (17%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
C+ C K F +S H + RPY C C K F +L H IH+GI+P++C
Sbjct: 12 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNI 70
Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQ--HSCMNSHFPKPYQCDRCSQFFGDRMNLIS 159
C K F+ + + + SC K Y+ + Q + S
Sbjct: 71 CAKRFMW-------------RDSFHRHVTSCT-----KSYEAAKAEQNTTEASGPSS 109
Score = 63.2 bits (155), Expect = 2e-13
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+ Y C C KSFT+ + H +H G+RP+ C C K F K +L
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF-KM------------KHHLV 54
Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISH 160
H M H KPY+C+ C++ F R + H
Sbjct: 55 GH--MKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 59.8 bits (146), Expect = 4e-12
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+ C C K F + L+ H +PY+C+ C K F + H+ + S + ++
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAA 95
Query: 104 TCDKSFVNQINPTS 117
+++ P+S
Sbjct: 96 KAEQNTTEASGPSS 109
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 70.6 bits (174), Expect = 5e-16
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 30/129 (23%)
Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHS 95
C Y C+K + + S L H + +PY+CD CE+ F+ S L HQ H+
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMH----SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Query: 96 GIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQFFG 152
G++PF+C TC + F +L H +H KP+ C C + F
Sbjct: 63 GVKPFQCKTCQRKF-------------SRSDHLKTH--TRTHTGEKPFSCRWPSCQKKFA 107
Query: 153 DRMNLISHQ 161
L+ H
Sbjct: 108 RSDELVRHH 116
Score = 42.5 bits (101), Expect = 9e-06
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIH 94
+C+ C + F + L +H + +P+ C C+K F S L H +H
Sbjct: 67 FQCKTCQRKFSRSDHLKTH----TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 69.0 bits (170), Expect = 8e-16
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
RPY C C++ F+ S +L H IH+G +PF+C C ++F ++ +
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNF-SR------------SDH 49
Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
L H + +H KP+ CD C + F H
Sbjct: 50 LTTH--IRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 64.0 bits (157), Expect = 8e-14
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 44 HKC--EYCHKVFDQQSSLLSHNCPQMK----PRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
+ C E C + F Q SL H ++ +P++C C ++F+ S +L TH H+G
Sbjct: 5 YACPVESCDRRFSQSGSLTRH----IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 98 RPFKCTTCDKSF 109
+PF C C + F
Sbjct: 61 KPFACDICGRKF 72
Score = 51.3 bits (124), Expect = 4e-09
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP----RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+C C + F + L +H ++ +P+ CD C + F S H IH
Sbjct: 35 FQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 68.2 bits (168), Expect = 2e-15
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+ + C C + FT S NL H+ H+ RP+ C C K+F + + +L
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF-RR------------QDHLR 62
Query: 130 QHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
H H KP++C C + F L H+
Sbjct: 63 DH--RYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 67.8 bits (167), Expect = 4e-15
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
C++C + F + +LL H RPY CD C K+F +L H+ IHS +PFKC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 104 TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
C K F Q LA H H
Sbjct: 78 ECGKGF-CQ------------SRTLAVH--KTLHMQTSSPTA 104
Score = 65.5 bits (161), Expect = 2e-14
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 26 YKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
+ C C R S N +H C+ CHK F +Q L H K +P+KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 76 TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
C K F S+ L H+ +H +
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 50.1 bits (121), Expect = 1e-08
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 84 SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
S + +L + F C C + F + NL H +H +PY
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHF-TK------------SYNLLIH--ERTHTDERPY 46
Query: 143 QCDRCSQFFGDRMNLISHQ 161
CD C + F + +L H+
Sbjct: 47 TCDICHKAFRRQDHLRDHR 65
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 67.6 bits (166), Expect = 3e-15
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 44 HKCEYCHKVFDQQSSLLSHNC----PQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRP 99
+ C +C K F Q+ L H P P + C C K+FT + H +G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 100 FKCTTCDKSF 109
+ S
Sbjct: 76 VEGENSGPSS 85
Score = 61.8 bits (151), Expect = 4e-13
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG----IRPFKCTTCDKSFVNQINPTSTHTPTYTK 125
+PY C C+K+F Q L+ H + F C+ C K+F +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF-------------TRR 60
Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
+ +A+H ++ P + + G
Sbjct: 61 NTMARH--ADNCAGPDGVEGENSGPSSG 86
Score = 52.1 bits (126), Expect = 2e-09
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 20/81 (24%)
Query: 86 NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH-----FPK 140
+ + H+G +P+ C+ CDK+F K L H + P
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTF-------------RQKQLLDMH--FKRYHDPNFVPA 46
Query: 141 PYQCDRCSQFFGDRMNLISHQ 161
+ C +C + F R + H
Sbjct: 47 AFVCSKCGKTFTRRNTMARHA 67
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 67.2 bits (165), Expect = 4e-15
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 42 GVHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
H C+Y C K + + S L +H +PY CD C F S L H H+G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 98 RPFKCTTCDKSF 109
RPF+C CD++F
Sbjct: 64 RPFQCQKCDRAF 75
Score = 59.9 bits (146), Expect = 3e-12
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
C K++T S +L H H+G +P+ C C F
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARS------------- 50
Query: 126 SNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
L +H H +P+QC +C + F +L H
Sbjct: 51 DELTRH--YRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 41.7 bits (99), Expect = 1e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+ C F + L H RP++C C+++F+ S +L H H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 66.7 bits (164), Expect = 5e-15
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ C C KSF S L+TH LIHS RP+ C C K F +Q KS++ +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF-HQ------------KSDMKKH 48
Query: 132 SCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
H KP++C C + F NLI+H
Sbjct: 49 --TFIHTGEKPHKCQVCGKAFSQSSNLITHS 77
Score = 64.0 bits (157), Expect = 6e-14
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
C+ C K F + S+L +H RPY C C K F ++ H IH+G +P KC
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 105 CDKSFVNQINPTSTHTPTYTKSNLAQH 131
C K+F +Q SNL H
Sbjct: 63 CGKAF-SQ------------SSNLITH 76
Score = 54.0 bits (131), Expect = 3e-10
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 25 AYKCHQCQRLIFLSANAGVH----------KCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++ C C + S+ H C+YC K F Q+S + H +P+KC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 75 DTCEKSFTNSQNLNTHQLIHSG 96
C K+F+ S NL TH H+G
Sbjct: 61 QVCGKAFSQSSNLITHSRKHTG 82
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 67.3 bits (165), Expect = 5e-15
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 44 HKCE--YCHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRP 99
H C+ C KV+ + S L +H +PYKC + C+ F S L H H+G +P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 100 FKCTTCDKSF 109
F+C C++SF
Sbjct: 76 FQCGVCNRSF 85
Score = 57.6 bits (140), Expect = 2e-11
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 26/114 (22%)
Query: 53 FDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKS 108
L R + CD C K +T S +L H H+G +P+KCT CD
Sbjct: 3 SGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 109 FVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
F L +H H KP+QC C++ F +L H
Sbjct: 57 FARS-------------DELTRH--YRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
E C F + L H +P++C C +SF+ S +L H H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 66.0 bits (162), Expect = 8e-15
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCD--TCEKSFTNSQNLNTHQLIHSGI 97
C ++F + L H K + + C C KSF ++L H +HS
Sbjct: 11 DFPGCGRIFSNRQYLNHH----KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 98 RPFKCTTCDKSF 109
R + C S
Sbjct: 67 RDYICEFSGPSS 78
Score = 64.1 bits (157), Expect = 5e-14
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 21/89 (23%)
Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLI-HSGIRPFKCT--TCDKSFVNQINPTSTHTPTYT 124
CD C + F+N Q LN H+ H + F C C KSF
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNF------------- 52
Query: 125 KSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
K +L +H M H + Y C+ G
Sbjct: 53 KKHLKEH--MKLHSDTRDYICEFSGPSSG 79
Score = 34.1 bits (79), Expect = 0.004
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 17/72 (23%)
Query: 94 HSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD--RCSQ 149
SG C C + F + L H K + C C +
Sbjct: 2 SSGSSGMPCDFPGCGRIF-------------SNRQYLNHHKKYQHIHQKSFSCPEPACGK 48
Query: 150 FFGDRMNLISHQ 161
F + +L H
Sbjct: 49 SFNFKKHLKEHM 60
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 68.4 bits (168), Expect = 1e-14
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 26/130 (20%)
Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRP 99
+ C + C +++ L +H C +P+ C CEK FT+ +L H L H+G +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 100 FKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF---PKPYQCDR--CSQFFG 152
F C CD F TK+N+ +H N Y C C + F
Sbjct: 73 FTCDSDGCDLRF-------------TTKANMKKH--FNRFHNIKICVYVCHFENCGKAFK 117
Query: 153 DRMNLISHQC 162
L HQ
Sbjct: 118 KHNQLKVHQF 127
Score = 60.3 bits (147), Expect = 1e-11
Identities = 26/119 (21%), Positives = 36/119 (30%), Gaps = 33/119 (27%)
Query: 44 HKCE--YCHKVFDQQSSLLSHNCPQM-----KPRPYKCDT--CEKSFTNSQNLNTHQLIH 94
C+ C F ++++ H K Y C C K+F L HQ H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKH---FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 95 SGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH----FPKPYQCDRC 147
+ P++C CDK F S L +H H K C
Sbjct: 130 TQQLPYECPHEGCDKRF-------------SLPSRLKRH--EKVHAGYPCKKDDSCSFV 173
Score = 56.8 bits (138), Expect = 2e-10
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 70 RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTK 125
+ Y C C ++ + L H H+G +PF C C+K F +
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFT-------------SL 57
Query: 126 SNLAQHSCMNSHF-PKPYQCD--RCSQFFGDRMNLISHQ 161
+L +H +H K + CD C F + N+ H
Sbjct: 58 HHLTRH--SLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 52.6 bits (127), Expect = 8e-09
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 45 KCEY--CHKVFDQQSSLLSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIRPF 100
C + C K F + + L H + PY+C + C+K F+ L H+ +H+G
Sbjct: 106 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 165
Query: 101 KCTTCDKSF 109
K +C
Sbjct: 166 KDDSCSFVG 174
Score = 36.4 bits (85), Expect = 0.003
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 18/76 (23%)
Query: 90 HQLIHSGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD-- 145
+ + + + C+ C ++ N+ L H C ++ KP+ C
Sbjct: 3 EKALPVVYKRYICSFADCGAAY-NK------------NWKLQAHLCKHTG-EKPFPCKEE 48
Query: 146 RCSQFFGDRMNLISHQ 161
C + F +L H
Sbjct: 49 GCEKGFTSLHHLTRHS 64
Score = 31.0 bits (71), Expect = 0.20
Identities = 18/89 (20%), Positives = 22/89 (24%), Gaps = 21/89 (23%)
Query: 11 FSQQTLL----CIHGNDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSHNCPQ 66
F + L H Y+C E C K F S L H
Sbjct: 116 FKKHNQLKVHQFSHTQQLPYECPH----------------EGCDKRFSLPSRLKRHEKVH 159
Query: 67 MKPRPYKCDTCEKSF-TNSQNLNTHQLIH 94
K D+C T + L H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 67.3 bits (165), Expect = 2e-14
Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 47/155 (30%)
Query: 19 IHGNDNAYKCHQCQRLIFLSANAGVHK-------------------CEYCHKVFDQQSSL 59
I + C R H C K F + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 60 LSHNCPQMKP----RPYKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCTT--CDKSFVN 111
++H ++ +P+ C C K F S+NL H+ H+G +PFKC CD+ F N
Sbjct: 79 VNH----IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFAN 134
Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCD 145
S+ +H M+ H K
Sbjct: 135 -------------SSDRKKH--MHVHTSDKSGPSS 154
Score = 66.9 bits (164), Expect = 3e-14
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 29/132 (21%)
Query: 44 HKCEYCHKVFDQQSSLLSH---------NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
+ C + F L++H +C KSF L H +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 95 SGIRPFKCTT--CDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR--CSQ 149
+G +PF C C K F NL H +H KP++C+ C +
Sbjct: 86 TGEKPFPCPFPGCGKIFA-------------RSENLKIH--KRTHTGEKPFKCEFEGCDR 130
Query: 150 FFGDRMNLISHQ 161
F + + H
Sbjct: 131 RFANSSDRKKHM 142
Score = 56.5 bits (137), Expect = 2e-10
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 27/125 (21%)
Query: 49 CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK------- 101
LS +C+++F+ L TH + P +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 102 --CTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP-KPYQCDR--CSQFFGDRMN 156
C KSF K L H + H KP+ C C + F N
Sbjct: 63 EECPREGKSF-------------KAKYKLVNH--IRVHTGEKPFPCPFPGCGKIFARSEN 107
Query: 157 LISHQ 161
L H+
Sbjct: 108 LKIHK 112
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 63.0 bits (154), Expect = 2e-13
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 43 VHKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
++ C + C K F + + L H + PY+C C+K F+ L H+ +H+G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 99 PFKCTTCDKSF 109
K +C
Sbjct: 61 CKKDDSCSFVG 71
Score = 51.5 bits (124), Expect = 3e-09
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 20/95 (21%)
Query: 72 YKCDT--CEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSN 127
Y C C K+F L HQ H+ P++C CDK F S
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS-------------LPSR 48
Query: 128 LAQHSCMNSHF-PKPYQCDRCSQFFGDRMNLISHQ 161
L +H H + D CS + H
Sbjct: 49 LKRH--EKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
Score = 31.1 bits (71), Expect = 0.056
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQ 91
++C + C K F S L H K D+C H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 62.2 bits (152), Expect = 3e-13
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG--IRPFKCTTCDKSF 109
+PY+C C FT S + H L + F C CD
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Score = 56.0 bits (136), Expect = 4e-11
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 18/79 (22%)
Query: 86 NLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH---FPKPY 142
+ + HSG +P++C C F T + H + +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARF--------TQ-----SGTMKMH--ILQKHTENVAKF 46
Query: 143 QCDRCSQFFGDRMNLISHQ 161
C C + +L H
Sbjct: 47 HCPHCDTVIARKSDLGVHL 65
Score = 55.2 bits (134), Expect = 1e-10
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQM-----KPRPYKCDTCEKSFTNSQNLNTHQ-LIHSGI 97
++C CH F Q ++ H + + C C+ +L H HS
Sbjct: 16 YECYICHARFTQSGTMKMH---ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 98 RPF 100
P
Sbjct: 73 GPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 61.7 bits (151), Expect = 3e-13
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
P KC C S ++ L H+ IH RPFKC C SNL+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQ-------------PSNLS 54
Query: 130 QH 131
+H
Sbjct: 55 KH 56
Score = 52.5 bits (127), Expect = 8e-10
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMK----PRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
KC C +++L H + RP+KC+ C NL+ H G
Sbjct: 10 EKCSECSYSCSSKAALRIH----ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 45.2 bits (108), Expect = 4e-07
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 16/69 (23%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQFFG 152
S P KC+ C S + K+ L H H +P++C+ CS
Sbjct: 4 GSSGHPEKCSECSYSCSS-------------KAALRIH--ERIHCTDRPFKCNYCSFDTK 48
Query: 153 DRMNLISHQ 161
NL H
Sbjct: 49 QPSNLSKHM 57
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 60.9 bits (148), Expect = 7e-13
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 16/86 (18%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS---GIRPFKCTTCDKSFVNQINPTSTHTPTYTKS 126
+C+ C + +LN HQ H+ F C C K F
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF-------------EKPD 52
Query: 127 NLAQHSCMNSHFPKPYQCDRCSQFFG 152
++A H + + G
Sbjct: 53 SVAAHRSKSHPALLLAPQESSGPSSG 78
Score = 53.6 bits (129), Expect = 4e-10
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 44 HKCEYCHKVFDQQSSLLSHN---CPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+CE C Q++SL H + + C+ C K F ++ H+
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 101 KCTTCDK 107
Sbjct: 68 APQESSG 74
Score = 44.3 bits (105), Expect = 9e-07
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 19/72 (26%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP----KPYQCDRCSQ 149
SG +C C + K++L H H + C+ C +
Sbjct: 2 SSGSSGLQCEICGFTC-------------RQKASLNWH--QRKHAETVAALRFPCEFCGK 46
Query: 150 FFGDRMNLISHQ 161
F ++ +H+
Sbjct: 47 RFEKPDSVAAHR 58
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 58.4 bits (142), Expect = 4e-12
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 70 RPYKCDTCEKSFTNSQNLNTH-QLIHSGIRPFKCTTCDKSF 109
+PY C +C K F+ +LN H + +H+ RP KC
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKP-----RPYKCDTCEKSFTN 83
+ C+ C K F + L H +K RP+KC ++
Sbjct: 13 YICQSCGKGFSRPDHLNGH----IKQVHTSERPHKCQVWVSGPSS 53
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 25/69 (36%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP------KPY 142
+ S +P+ C +C K F ++ +N H +P+
Sbjct: 2 SSGSSGSVGKPYICQSCGKGF-------------------SRPDHLNGHIKQVHTSERPH 42
Query: 143 QCDRCSQFF 151
+C
Sbjct: 43 KCQVWVSGP 51
Score = 24.8 bits (55), Expect = 5.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 140 KPYQCDRCSQFFGDRMNLISH 160
KPY C C + F +L H
Sbjct: 11 KPYICQSCGKGFSRPDHLNGH 31
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 57.5 bits (140), Expect = 9e-12
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
R + C+ C ++F ++L H H+ +P+ C C+++F
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 46.7 bits (112), Expect = 8e-08
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHSG 96
CE C + F +Q L H +PY C C ++FT L H Q IHSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 57.8 bits (141), Expect = 9e-12
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ 130
PYKCD C+ SF NL +H+ +H+G +P++C C F N+ +NL
Sbjct: 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF-NR------------PANLKT 63
Query: 131 H 131
H
Sbjct: 64 H 64
Score = 53.6 bits (130), Expect = 3e-10
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+KC+ C F + +L SH +PY+C+ C F NL TH IHSG +P+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.7 bits (125), Expect = 2e-09
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 84 SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
+ + H + +P+KC C SF K NLA H H KPY
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASF-RY------------KGNLASH--KTVHTGEKPY 46
Query: 143 QCDRCSQFFGDRMNLISHQ 161
+C+ C F NL +H
Sbjct: 47 RCNICGAQFNRPANLKTHT 65
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 57.6 bits (140), Expect = 1e-11
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 15/64 (23%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSN 127
Y+C C + +T+ N H + ++ + C C K F K N
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF-------------TRKDN 55
Query: 128 LAQH 131
+ H
Sbjct: 56 MTAH 59
Score = 55.3 bits (134), Expect = 6e-11
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 44 HKCEYCHKVFDQQSSLLSH--NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGI 97
++C+ C +V+ S+ H + + Y C C K FT N+ H I I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 47.5 bits (114), Expect = 6e-08
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 91 QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDRCSQ 149
+ G ++C C + + TH SN +H + K Y C C +
Sbjct: 2 EFTKEGEHTYRCKVCSRVY--------TH-----ISNFCRHYVTSHKRNVKVYPCPFCFK 48
Query: 150 FFGDRMNLISHQ 161
F + N+ +H
Sbjct: 49 EFTRKDNMTAHV 60
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 57.1 bits (139), Expect = 2e-11
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 55 QQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN 114
S Q + R YKCD C KSF++S +L+ H+ H+G +P+KC C K+F Q
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF-IQ-- 58
Query: 115 PTSTHTPTYTKSNLAQH 131
+S+L H
Sbjct: 59 ----------RSHLIGH 65
Score = 53.6 bits (130), Expect = 3e-10
Identities = 21/58 (36%), Positives = 28/58 (48%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
+KC+ C K F S L H +PYKCD C K+F +L H +H+G P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 49.0 bits (118), Expect = 2e-08
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 84 SQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPY 142
S + + R +KC C KSF + S+L++H +H KPY
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSH-------------SSDLSKH--RRTHTGEKPY 47
Query: 143 QCDRCSQFFGDRMNLISHQ 161
+CD C + F R +LI H
Sbjct: 48 KCDECGKAFIQRSHLIGHH 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 55.8 bits (135), Expect = 6e-11
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 56 QSSLLSHNCPQMKP--RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
+ +++ + P RPY C +C++ F+ S L H IH+G +PF+C C ++F
Sbjct: 2 EPHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 47 EYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
E C + F + L H +P++C C ++F+ S +L TH H+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 54.8 bits (133), Expect = 1e-10
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 13/62 (20%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLA 129
+PY C C K+F+ S L HQ +H+G +P+KC C K+F +Q S L
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF-SQ------------NSGLI 59
Query: 130 QH 131
H
Sbjct: 60 NH 61
Score = 51.3 bits (124), Expect = 2e-09
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+ C C K F + S L+ H +PYKC C K+F+ + L HQ IH+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 48.2 bits (116), Expect = 3e-08
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 87 LNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDR 146
+ IHSG +P+ C C K+F S L QH +++ KPY+C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSR-------------SSILVQHQRVHTG-EKPYKCLE 47
Query: 147 CSQFFGDRMNLISHQ 161
C + F LI+HQ
Sbjct: 48 CGKAFSQNSGLINHQ 62
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 51.1 bits (123), Expect = 2e-09
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+ C C F+ S L+ H+ HSG++P ++
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 31.1 bits (71), Expect = 0.027
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 89 THQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCD 145
+ +G +PF CT C F L++H SH KP
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSR-------------SDELSRH--RRSHSGVKPSGPS 46
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 5e-09
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+KCD C KSF LN H ++H+ +P ++
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 35.5 bits (83), Expect = 7e-04
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 14/57 (24%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCD 145
+ +G +PFKC C KSF +S L +HS +++ KP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSF-CG------------RSRLNRHSMVHTA-EKPSGPS 44
Score = 29.0 bits (66), Expect = 0.13
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++CD C + F R L H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHS 32
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 50.5 bits (121), Expect = 5e-09
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 57 SSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIRPFKCT--TCDKSF 109
S + R + C C K++ S +L H H+G +PF C+ C++ F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59
Score = 40.1 bits (94), Expect = 3e-05
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 44 HKCEY--CHKVFDQQSSLLSHNCPQMKPRPYKCD--TCEKSFTNSQNLNTHQLIH 94
H C + C K + + S L +H +P+ C CE+ F S L+ H+ H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.9 bits (65), Expect = 0.29
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 84 SQNLNTHQLIHSGIRPFKCT--TCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PK 140
S + Q+ S IR C+ C K++ + S+L H +H K
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTY-------------FKSSHLKAH--TRTHTGEK 46
Query: 141 PYQCD--RCSQFFGDRMNLISHQ 161
P+ C C + F L H+
Sbjct: 47 PFSCSWKGCERRFARSDELSRHR 69
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 49.1 bits (118), Expect = 7e-09
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+ C CEK+F++ L HQ H+ +P ++
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 30.6 bits (70), Expect = 0.034
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 16/53 (30%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
SG +PF C+ C+K+F +KS L H +H KP
Sbjct: 4 GSSGEKPFGCSCCEKAF-------------SSKSYLLVH--QQTHAEEKPSGP 41
Score = 29.8 bits (68), Expect = 0.071
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP+ C C + F + L+ HQ
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQ 30
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 7e-09
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K + + NL+ HQ +H+G RP +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K + N K NL H +++ +P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGY-NS------------KFNLDMHQKVHTG-ERPSGP 43
Score = 29.8 bits (68), Expect = 0.081
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C++C + + + NL HQ
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQ 32
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 7e-09
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
RPY C+ C K+F +L H H + ++
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 16/56 (28%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
SG RP+ C C K+F S+L +H + HF K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGR-------------HSHLIEH--LKRHFREKSSGP 43
Score = 29.4 bits (67), Expect = 0.12
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+PY C+ C + FG +LI H
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHL 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 9e-09
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ YKCD C K F+ S +L THQ +H+G +P ++
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.011
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ G + +KC C K F +Q S+L H +++ KP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEF-SQ------------SSHLQTHQRVHTG-EKPSGP 43
Score = 28.6 bits (65), Expect = 0.17
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K Y+CD C + F +L +HQ
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQ 32
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC C KSFT L HQ H+G R +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 16/59 (27%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR 146
+ +G +P+KC+ C KSF KS L H H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFT-------------WKSRLRIHQ--KCHTGERHSGPSS 45
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + L HQ
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQ 32
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
PYKC CEKSF+ L HQ +H+ +P +
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G+ P+KC+ C+KSF K L H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSG-------------KLRLLVH 31
Score = 28.7 bits (65), Expect = 0.20
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
PY+C +C + F ++ L+ HQ
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQ 32
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 1e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K + NL+ HQ +H G + ++
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ S +P+KC C K + N+ + NL H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGY-NR------------RLNLDMH 31
Score = 30.2 bits (69), Expect = 0.063
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + + R+NL HQ
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 1e-08
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
P+ C C K FT+ NL HQ IH+G RP ++
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G PF C+ C K F K+NL H
Sbjct: 2 SSGSSGTGENPFICSECGKVFT-------------HKTNLIIH 31
Score = 30.2 bits (69), Expect = 0.048
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
P+ C C + F + NLI HQ
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQ 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K F ++L TH ++H+G +P ++
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+KC C K F+ + +L H H KP
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFIC-------------RRDLYTH--HMVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F R +L +H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHH 32
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+KC C K F+ LN H +H+G +P ++
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.004
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +PFKC C K F +S L H H KP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSR-------------RSALNVH--HKLHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F R L H
Sbjct: 11 KPFKCVECGKGFSRRSALNVHH 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ +KC C+ F+ + +L HQ +H G +P ++
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.015
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 16/59 (27%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR 146
+ G + +KC CD F S+L H N H KP
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQ-------------ASSLRLH--QNVHVGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.37
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K ++C C F +L HQ
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQ 32
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 2e-08
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C K+FT+ NL THQ IH+G +P ++
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.003
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F +SNL H +++ KP
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFT-------------DRSNLFTHQKIHTG-EKPSGP 43
Score = 31.7 bits (73), Expect = 0.017
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F DR NL +HQ
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQ 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 2e-08
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKCD C KSF +L HQ IH+G +P +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.010
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G +P+KC C KSF S+L H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRY-------------GSSLTVH 31
Score = 28.2 bits (64), Expect = 0.28
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+CD C + F +L HQ
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQ 32
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
PYKC C K+FT L+ HQ H+G R ++
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+KC+ C K+F KS L H SH +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFT-------------RKSGLHIHQ--QSHTGERHSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + L HQ
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQ 32
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ +KC+ C+K+FT S +L HQ IH+G +P ++
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G + FKC C K+F Q S+L H H KP
Sbjct: 2 SSGSSGAGKKLFKCNECKKTF-TQ------------SSSLTVH--QRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.53
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K ++C+ C + F +L HQ
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQ 32
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 3e-08
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY C+ C K+F + L HQ IH+G +P ++
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 32.1 bits (74), Expect = 0.012
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G +P+ C C K+F++ S L +H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIH-------------DSQLQEH 31
Score = 28.6 bits (65), Expect = 0.20
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F L HQ
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQ 32
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 47.6 bits (113), Expect = 4e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTC 105
+ C+ C K F + +LN H+L HSG +P+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 24.5 bits (53), Expect = 5.7
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K C+ C + F D +L H+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHK 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 4e-08
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C KSF+ S L H + H+ +P ++
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.046
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ G +P++C+ C KSF L QH +H KP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSF-------------SGSYRLTQH--WITHTREKPSGP 43
Score = 28.7 bits (65), Expect = 0.18
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPYQC C + F L H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHW 32
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 48.8 bits (116), Expect = 4e-08
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQ-MKPRPYKCDTCE--------KSFTNSQNLNTHQLIH 94
+ C + F L++H + + C KSF L H +H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 95 SGIRPFKCT 103
+G + +
Sbjct: 86 TGEKSGPSS 94
Score = 26.5 bits (58), Expect = 3.2
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 21/77 (27%)
Query: 93 IHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSC---MNSHFPKPYQC----- 144
I +CD++F T L H + + C
Sbjct: 19 IDEAQLSRPKKSCDRTF-------------STMHELVTHVTMEHVGGPEQNNHVCYWEEC 65
Query: 145 DRCSQFFGDRMNLISHQ 161
R + F + L++H
Sbjct: 66 PREGKSFKAKYKLVNHI 82
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY C C K+FT NL HQ IH+ +P ++
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.007
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G +P+ C C K+F +SNL +H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFT-------------IRSNLIKH 31
Score = 30.2 bits (69), Expect = 0.047
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C C + F R NLI HQ
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQ 32
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+PY C+ C F + Q L +H IH+G P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 31.7 bits (73), Expect = 0.013
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTS---THT 120
G +P+ C C F + S HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C F L SH
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHL 31
Score = 27.1 bits (61), Expect = 0.70
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+ CE C F +L SH
Sbjct: 12 YPCEICGTRFRHLQTLKSH 30
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
RP+KC+ C K F +L H +HS + ++
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ SG RPFKC C K F +S+LA H + H K
Sbjct: 2 SSGSSGSGERPFKCNECGKGF-------------GRRSHLAGH--LRLHSREKSSGP 43
Score = 28.3 bits (64), Expect = 0.24
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+P++C+ C + FG R +L H
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHL 32
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 4e-08
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P++C C+K+F NL HQ H+G +P ++
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 33.6 bits (78), Expect = 0.004
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +PF+C+ C K+F TKSNL H +H KP
Sbjct: 2 SSGSSGTGEKPFECSECQKAF-------------NTKSNLIVHQ--RTHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.093
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F + NLI HQ
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQ 32
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.1 bits (113), Expect = 5e-08
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P++C C KSF+ S L THQ IH+G +P ++
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.015
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +PF+C C KSF S LA H H KP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSI-------------SSQLATH--QRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.28
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F L +HQ
Sbjct: 11 KPFECAECGKSFSISSQLATHQ 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 5e-08
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+PY C+ C K+F+ +L THQ+IH+G +P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.010
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G++P+ C C K+F S+L H +++ KP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSV-------------YSSLTTHQVIHTG-EKPSGP 43
Score = 28.3 bits (64), Expect = 0.24
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F +L +HQ
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQ 32
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+ C C K F SSL +H +P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 5e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K FT + +L H IH+G +P +
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.003
Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ SG +P+KC C K F Q S+L H H KP
Sbjct: 2 SSGSSGSGEKPYKCNECGKVF-TQ------------NSHLTNH--WRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.28
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L +H
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHW 32
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 6e-08
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC C K + +L+ HQ +H+G + +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 33.7 bits (78), Expect = 0.003
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 16/58 (27%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCD 145
+ SG +P+KC C K + + +L H H K
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYK-------------RRLDLDFH--QRVHTGEKLSGPS 44
Score = 29.0 bits (66), Expect = 0.13
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + + R++L HQ
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQ 32
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-08
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K+F NL THQ+IH+G +P +
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.005
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K+F SNL H +++ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAF-------------RAHSNLTTHQVIHTG-EKPSGP 43
Score = 28.6 bits (65), Expect = 0.19
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F NL +HQ
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQ 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 6e-08
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC C K+F +LN H+ IH+G RP +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 32.5 bits (75), Expect = 0.008
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ SG +P+KC+ C K+F ++ ++L +H H +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAF-HR------------HTHLNEH--RRIHTGYRPSGP 43
Score = 27.1 bits (61), Expect = 0.61
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +L H+
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHR 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
R ++C C K F + N H+ IH+G +P ++
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ G R +C+ C K F Q SN QH
Sbjct: 2 SSGSSGHGERGHRCSDCGKFF-LQ------------ASNFIQH 31
Score = 30.6 bits (70), Expect = 0.037
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+ ++C C +FF N I H+
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHR 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K FT + +L HQ IH+G++P ++
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.005
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K F Q S+LA H +++ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVF-TQ------------NSHLANHQRIHTG-VKPSGP 43
Score = 28.3 bits (64), Expect = 0.28
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L +HQ
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 8e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
RP+KC+ C KSF S +L HQ IH+G +P +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G RP KC C KSF Q ++L QH
Sbjct: 2 SSGSSGTGERPHKCNECGKSF-IQ------------SAHLIQH 31
Score = 27.9 bits (63), Expect = 0.40
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+P++C+ C + F +LI HQ
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQ 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+P+KC+ C K FT + L++HQ +H+G +P +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.008
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ SG +PFKC C K F Q S L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRF-TQ------------NSQLHSH 31
Score = 28.6 bits (65), Expect = 0.19
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C+ C + F L SHQ
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQ 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 8e-08
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+KC C KS+ +L HQ +H+G +P ++
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 34.0 bits (79), Expect = 0.003
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +PFKC C KS+ NQ + +L QH H KP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSY-NQ------------RVHLTQH--QRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.25
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + + R++L HQ
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQ 32
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 9e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C K+F NL HQ IH+G +P ++
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F Q K+NL QH +++ KP
Sbjct: 2 SSGSSGTGEKPYRCGECGKAF-AQ------------KANLTQHQRIHTG-EKPSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + NL HQ
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C KSFT L+ HQ IH+G +P ++
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.051
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P++C+ C KSF KS L H H KP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTK-------------KSQLHVHQ--QIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.25
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + L HQ
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQ 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC C K+F S +L H +HSG RP ++
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 31.7 bits (73), Expect = 0.018
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 14/55 (25%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+G +P+KC C K+F S+L QH ++S +P
Sbjct: 3 SGSSGTGEKPYKCQVCGKAF-RV------------SSHLVQHHSVHSG-ERPSGP 43
Score = 27.1 bits (61), Expect = 0.68
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +L+ H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHH 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+KC C K+F + +L +H IH+G +P ++
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 33.2 bits (77), Expect = 0.004
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ SG +PFKC C K+F Q +LA H + H KP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAF-RQ------------NIHLASH--LRIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.40
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F ++L SH
Sbjct: 11 KPFKCKECGKAFRQNIHLASHL 32
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K F ++ L+ HQ IH+G +P +
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.017
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G +P+KC C K F S L++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVF-------------RHNSYLSRH 31
Score = 27.9 bits (63), Expect = 0.38
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F L HQ
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQ 32
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.9 bits (110), Expect = 1e-07
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
RPY C C K+FT+ NL HQ IH+G +P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.008
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G RP+ CT C K+F + +SNL +H H KP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTD-------------RSNLIKH--QKIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.030
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+PY C C + F DR NLI HQ
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ 32
Score = 25.5 bits (57), Expect = 2.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+ C C K F +S+L+ H +P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ Y C C KSF+ + L H+ +HSG +P ++
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.014
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G + + C C KSF L +H ++S KP
Sbjct: 2 SSGSSGTGEKLYNCKECGKSF-------------SRAPCLLKHERLHSG-EKPSGP 43
Score = 27.5 bits (62), Expect = 0.45
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K Y C C + F L+ H+
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHE 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C K+F++ Q+L+ HQ IHSG +P ++
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.038
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 14/55 (25%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+G +P++C+ C K+F +H + +L+ H ++S KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAF--------SH-----RQSLSVHQRIHSG-KKPSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F R +L HQ
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQ 32
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 1e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P KC C K+F L HQ H + ++
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 31.0 bits (71), Expect = 0.025
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P KCT C K+F KS L H +H K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFC-------------WKSQLIMH--QRTHVDDKHSGP 43
Score = 29.4 bits (67), Expect = 0.089
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP +C C + F + LI HQ
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQ 32
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-07
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C KSF L+ HQ IH+G P ++
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G +P++C+ C KSF+ KS L H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFI-------------KKSQLHVH 31
Score = 28.3 bits (64), Expect = 0.26
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F + L HQ
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQ 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 1e-07
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P+ C C K+F++ LN H+ IH+G +P ++
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 30.6 bits (70), Expect = 0.037
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +PF C C K+F + L QH H KP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSD-------------HIGLNQH--RRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP+ C C + F D + L H+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHR 32
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+PYKC+TC F +L H LIH+G P
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTS---THT 120
G +P+KC TC FV + + HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 29.4 bits (67), Expect = 0.10
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C F +L +H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHV 31
Score = 26.7 bits (60), Expect = 1.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
+KCE C F Q + L +H
Sbjct: 12 YKCETCGARFVQVAHLRAH 30
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+P++C C KSF NL THQ IH+G + +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 34.4 bits (80), Expect = 0.001
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +PF+CT C KSF K NL H +++ K
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRA-------------KGNLVTHQRIHTG-EKSGPS 43
Score = 29.4 bits (67), Expect = 0.089
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F + NL++HQ
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQ 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K+F+ + L HQ IH+G +P ++
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.017
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K+F +Q S LA+H +++ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAF-SQ------------TSKLARHQRIHTG-EKPSGP 43
Score = 27.9 bits (63), Expect = 0.34
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F L HQ
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC C K+F ++ + HQ +H+G RP +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 31.8 bits (73), Expect = 0.013
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K+F + S+ QH +++ +P
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGD-------------NSSCTQHQRLHTG-QRPSGP 43
Score = 29.5 bits (67), Expect = 0.091
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + FGD + HQ
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQ 32
Score = 26.8 bits (60), Expect = 0.89
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+KC C K F SS H RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY C+ C K+F S +LN H +H+ ++
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 32.1 bits (74), Expect = 0.012
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 90 HQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCDR 146
+G +P+ C C K+FV ++L QH + H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVL-------------SAHLNQH--LRVHTQETLSGPSS 45
Score = 26.3 bits (59), Expect = 1.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F +L H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL 32
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ ++C C + FT +LN HQ IH+G +P ++
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.016
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ S + +C C + F KS+L QH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFT-------------LKSHLNQH 31
Score = 28.3 bits (64), Expect = 0.22
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K +QC C + F + +L HQ
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQ 32
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P++C+ C K FT + +L++HQ +H+G +P ++
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 31.4 bits (72), Expect = 0.021
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 89 THQLIHSGIRPFKCTTCDKSF 109
+ SG +PF+C C K F
Sbjct: 2 SSGSSGSGEKPFQCEECGKRF 22
Score = 27.9 bits (63), Expect = 0.33
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP+QC+ C + F +L SHQ
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQ 32
Score = 26.4 bits (59), Expect = 1.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT 76
+CE C K F Q S L SH +P +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY C+ C KSF +LN H+ IH+G +P +
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.011
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+ C C KSF+ KS+L +H H KP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQ-------------KSHLNRH--RRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.29
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F + +L H+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHR 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+PY+C C K+F +LN H+ +H+G R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 29.0 bits (66), Expect = 0.14
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ SG +P++C C K+F+ +L QH
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQ-------------IGHLNQH 31
Score = 28.3 bits (64), Expect = 0.26
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +L H+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHK 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ YKC+ C K F+ + L+ HQ IH+G +P ++
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 31.0 bits (71), Expect = 0.026
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G + +KC C K F ++ S L+QH +++ KP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVF-SR------------NSQLSQHQKIHTG-EKPSGP 43
Score = 27.1 bits (61), Expect = 0.69
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K Y+C+ C + F L HQ
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQ 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K FT + +L H+ IH+G +P ++
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.010
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K F Q S+L +H +++ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVF-TQ------------NSHLVRHRGIHTG-EKPSGP 43
Score = 27.8 bits (63), Expect = 0.34
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L+ H+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHR 32
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 45.3 bits (108), Expect = 2e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY C C KSF + L HQ +HSG +P +
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 31.8 bits (73), Expect = 0.014
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+ C C KSF S L +H ++S KP
Sbjct: 2 SSGSSGTGEKPYNCKECGKSF-RW------------ASCLLKHQRVHSG-EKPSGP 43
Score = 28.3 bits (64), Expect = 0.28
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C C + F L+ HQ
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQ 32
Score = 26.4 bits (59), Expect = 1.1
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+ C+ C K F S LL H +P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.3 bits (108), Expect = 2e-07
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+P++C C +F+ S +L H H P ++
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 32.2 bits (74), Expect = 0.012
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCD 145
+ +G +PF+C C +F +L +H + SH P
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFS-------------WSCSLFKH--LRSHERTDPSGPS 44
Score = 28.7 bits (65), Expect = 0.20
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP+QC C F +L H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHL 32
Score = 24.9 bits (55), Expect = 4.5
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT 76
+C+ C F SL H + P +
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 2e-07
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY+CD C K+F++ +L HQ +HSG +P +
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.043
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F + ++L QH ++S KP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSH-------------HASLTQHQRVHSG-EKPSGP 43
Score = 28.6 bits (65), Expect = 0.21
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+CD C + F +L HQ
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQ 32
Score = 25.2 bits (56), Expect = 3.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C+ C K F +SL H +P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K FT + +L H+ IH+G +P +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K F Q S+LA+H +++ KP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVF-TQ------------NSHLARHRGIHTG-EKPSGP 43
Score = 27.1 bits (61), Expect = 0.62
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L H+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 3e-07
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY+C+ C K+F+ +L THQ IH+G +P +
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.0 bits (71), Expect = 0.028
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F +S+L H +++ KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSV-------------RSSLTTHQAIHTG-KKPSGP 43
Score = 28.7 bits (65), Expect = 0.18
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C++C + F R +L +HQ
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQ 32
Score = 25.6 bits (57), Expect = 2.6
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F +SSL +H +P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY C C K+F++ L H HSG +P ++
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 32.9 bits (76), Expect = 0.006
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+ C+ C K+F +KS L H M +H KP
Sbjct: 2 SSGSSGAGEKPYGCSECGKAF-------------SSKSYLIIH--MRTHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.27
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C C + F + LI H
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHM 32
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C+ C K+F+ + L HQ +H+G +P ++
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.017
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F +Q S LA+H +++ KP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAF-SQ------------TSKLARHQRVHTG-EKPSGP 43
Score = 28.3 bits (64), Expect = 0.27
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPYQC+ C + F L HQ
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F Q S L H +P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+P++C C KSF+ + L HQ IH+G P +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 31.7 bits (73), Expect = 0.016
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P +C C KSF S L H +++ P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSF-------------NSQLIVHQRIHTG-ENPSGP 43
Score = 28.7 bits (65), Expect = 0.20
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C C + F LI HQ
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQ 32
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
R Y+C C K+F L HQ IH+G +P ++
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 30.9 bits (71), Expect = 0.027
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G R ++C+ C K+F KS L H
Sbjct: 2 SSGSSGTGERHYECSECGKAFAR-------------KSTLIMH 31
Score = 28.6 bits (65), Expect = 0.21
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+ Y+C C + F + LI HQ
Sbjct: 11 RHYECSECGKAFARKSTLIMHQ 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC C K F + +L HQLIH+G +P ++
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 32.4 bits (75), Expect = 0.008
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+KC C K F + S+LA+H H KP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVF-RR------------NSHLARH--QLIHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 0.60
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +L HQ
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQ 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY CD C K+F S L HQ IH+G +P +
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.063
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ SG +P+ C C K+F + L +H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGL-------------SAELVRH 31
Score = 29.0 bits (66), Expect = 0.14
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY CD C + FG L+ HQ
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQ 32
Score = 25.9 bits (58), Expect = 1.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 45 KCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
C+YC K F + L+ H +P
Sbjct: 14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+ ++C C K+FT L+ HQ IH+G +P +
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.007
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G + F+CT C K+F KS L+ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFT-------------RKSTLSMH 31
Score = 26.7 bits (60), Expect = 1.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K ++C C + F + L HQ
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQ 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PYKC+ C K+F +L HQ HSG +P +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.028
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+KC C K+F +S+LA H +H KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAF-------------RARSSLAIH--QATHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.26
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F R +L HQ
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQ 32
Score = 25.6 bits (57), Expect = 2.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+KC C K F +SSL H +P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.8 bits (107), Expect = 3e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+PY+C+ C+K+F NL HQ H+G
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 32.8 bits (76), Expect = 0.005
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F TKSNL H ++
Sbjct: 2 SSGSSGTGEKPYECNECQKAF-------------NTKSNLMVHQRTHTG-ESGPSS 43
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F + NL+ HQ
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQ 32
Score = 25.5 bits (57), Expect = 2.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F+ +S+L+ H
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 3e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K FT + +L H+ IH+G +P ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P+KC C K F Q S+LA+H H KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVF-TQ------------NSHLARH--RGIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.50
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L H+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 4e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
RPY+C C K+F +L H+ H+G +P +
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.012
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G RP++C C K+F TKS+L H SH KP
Sbjct: 2 SSGSSGTGQRPYECIECGKAF-------------KTKSSLICH--RRSHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.16
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+PY+C C + F + +LI H+
Sbjct: 11 RPYECIECGKAFKTKSSLICHR 32
Score = 26.0 bits (58), Expect = 2.0
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F +SSL+ H +P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 4e-07
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PYKC+ C K FT + +L H+ +H+G +P ++
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 31.7 bits (73), Expect = 0.016
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P+KC C K F Q S+LA+H +++ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVF-TQ------------NSHLARHRRVHTG-GKPSGP 43
Score = 27.1 bits (61), Expect = 0.67
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F +L H+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHR 32
Score = 25.9 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT 76
+KC C KVF Q S L H +P +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 44.4 bits (106), Expect = 5e-07
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY C C K+F+ L HQ H+G++P ++
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 32.5 bits (75), Expect = 0.008
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G++P+ C+ C K+F KS L H SH KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTF-------------SLKSQLIVHQ--RSHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.24
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C +C++ F + LI HQ
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQ 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 5e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+P+KC+ C K F + +HQ HSG +P +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.004
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 16/58 (27%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQCD 145
+ SG +PFKC C K F YT S H SH KP
Sbjct: 2 SSGSSGSGEKPFKCEECGKGF-------------YTNSQCYSHQ--RSHSGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.081
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KP++C+ C + F SHQ
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQ 32
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCD 75
KCE C K F S SH +P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.0 bits (105), Expect = 5e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
PY+C C K+F L +HQ H+G
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.11
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
PY+C C + F + LISHQ
Sbjct: 9 NPYECSECGKAFNRKDQLISHQ 30
Score = 27.5 bits (62), Expect = 0.51
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 16/55 (29%)
Query: 91 QLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
SG P++C+ C K+F K L H +H
Sbjct: 2 SSGSSGENPYECSECGKAF-------------NRKDQLISHQ--RTHAGESGPSS 41
Score = 25.2 bits (56), Expect = 2.9
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F+++ L+SH
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 5e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
R Y+C C K+F L+ HQ IH G +P +
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.026
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G R ++C+ C K+F+ KS L+ H ++ KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQ-------------KSTLSMHQRIHRG-EKPSGP 43
Score = 27.5 bits (62), Expect = 0.51
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+ Y+C C + F + L HQ
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQ 32
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 7e-07
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY+C C K+FT +L HQ H+G +P +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.025
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G +P++C C K+F K++LAQH +H KP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQ-------------KAHLAQH--QKTHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C CS+ F + +L HQ
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQ 32
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.7 bits (110), Expect = 9e-07
Identities = 9/61 (14%), Positives = 31/61 (50%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
PE I+ + + ++ D +K+ Q+ +++ ++ ++ Q+Q +Q ++ + + +
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 224 Q 224
Sbjct: 144 A 144
Score = 38.2 bits (88), Expect = 9e-04
Identities = 9/57 (15%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 178 ISNNDEQA----KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ-----QQQQQQ 225
I+ D I+ +++Q+++ Q+ + +Q+ +++ ++ Q+Q +Q
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 130
Score = 28.6 bits (63), Expect = 1.3
Identities = 4/35 (11%), Positives = 18/35 (51%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + Q+ + ++ +++Q+++ Q+ + +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ 110
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.6 bits (104), Expect = 9e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
PY+C C K F+ L +HQ HSG
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.4 bits (67), Expect = 0.098
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ +G P++C C K F K L H
Sbjct: 2 SSGSSGTGENPYECCECGKVF-------------SRKDQLVSH 31
Score = 27.8 bits (63), Expect = 0.34
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
PY+C C + F + L+SHQ
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQ 32
Score = 24.8 bits (55), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
++C C KVF ++ L+SH
Sbjct: 13 YECCECGKVFSRKDQLVSH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+PY+C C K+F+ + +L HQ +H+G +P ++
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 29.8 bits (68), Expect = 0.065
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F +Q ++L QH +++ KP
Sbjct: 2 SSGSSGTGEKPYECKECGKAF-SQ------------TTHLIQHQRVHTG-EKPSGP 43
Score = 27.5 bits (62), Expect = 0.46
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +LI HQ
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCT 103
+PY C+ C K+F+ L+ HQ H+G +P +
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.011
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ SG +P+ C C K+F KS L+ H +H KP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTF-------------SQKSILSAH--QRTHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.40
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F + L +HQ
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQ 32
Score = 25.2 bits (56), Expect = 3.2
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
+ C C K F Q+S L +H +P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
PY+C C K+F+ L +HQ H+G +P ++
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 30.2 bits (69), Expect = 0.048
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G P++C C K+F K L H +H KP
Sbjct: 2 SSGSSGTGENPYECHECGKAF-------------SRKYQLISHQ--RTHAGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.25
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
PY+C C + F + LISHQ
Sbjct: 11 NPYECHECGKAFSRKYQLISHQ 32
Score = 24.4 bits (54), Expect = 6.4
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKC 74
++C C K F ++ L+SH +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.0 bits (102), Expect = 2e-06
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTT 104
+ + CD C K+F L HQ +H G + ++
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 31.4 bits (72), Expect = 0.018
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 90 HQLIHSGIRPFKCTTCDKSF 109
SG + C C K+F
Sbjct: 3 SGSSGSGEKSHTCDECGKNF 22
Score = 27.6 bits (62), Expect = 0.51
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K + CD C + F L HQ
Sbjct: 11 KSHTCDECGKNFCYISALRIHQ 32
Score = 26.4 bits (59), Expect = 1.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
H C+ C K F S+L H
Sbjct: 13 HTCDECGKNFCYISALRIH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
PY C+ C K+F + L H H+G
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.015
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 16/57 (28%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHF-PKPYQC 144
+ +G++P+ C C K+F +KS L H +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAF-------------RSKSYLIIH--TRTHTGESGPSS 43
Score = 28.2 bits (64), Expect = 0.25
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C+ C + F + LI H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHT 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 42.1 bits (100), Expect = 3e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
PY+C+ C K+F L H+ H+G+
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 31.0 bits (71), Expect = 0.030
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
+ SG +P++C C K+F KS L H
Sbjct: 2 SSGSSGSGEKPYECNECGKAF-------------IWKSLLIVH 31
Score = 28.3 bits (64), Expect = 0.22
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C+ C + F + LI H+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHE 32
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 41.5 bits (98), Expect = 4e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
PY C C KSFT +L HQ S P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 28.8 bits (65), Expect = 0.17
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
PY C +C + F R +L HQ
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQ 31
Score = 27.6 bits (62), Expect = 0.44
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 90 HQLIHSGIRPFKCTTCDKSF 109
G P+ C C KSF
Sbjct: 2 SSGSSGGETPYLCGQCGKSF 21
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
R Y+C C KSF +L H+ IH+G P
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 29.5 bits (67), Expect = 0.099
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
+ Y+C C + F + +L H+
Sbjct: 9 RVYECQECGKSFRQKGSLTLHE 30
Score = 25.2 bits (56), Expect = 2.6
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
SG R ++C C KSF Q K +L H
Sbjct: 5 SSGQRVYECQECGKSF-RQ------------KGSLTLH 29
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 41.0 bits (97), Expect = 8e-06
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
+PY+CD C K+F+ +L H +H+G P
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 30.2 bits (69), Expect = 0.042
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 90 HQLIHSGIRPFKCTTCDKSF 109
G +P++C C K+F
Sbjct: 2 SSGSSGGEKPYRCDQCGKAF 21
Score = 29.1 bits (66), Expect = 0.13
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+CD+C + F + +LI H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHI 31
Score = 24.5 bits (54), Expect = 4.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 44 HKCEYCHKVFDQQSSLLSH 62
++C+ C K F Q+ SL+ H
Sbjct: 12 YRCDQCGKAFSQKGSLIVH 30
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 45.1 bits (105), Expect = 8e-06
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
V+ ++ + Q +K + ++QQ + QQ +Q QQ Q Q Q Q
Sbjct: 563 KGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQ 619
Score = 44.7 bits (104), Expect = 1e-05
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
P+ L + D + M+ +Q Q ++ + ++QQ + QQ
Sbjct: 540 GKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQA 599
Query: 221 QQQQQ 225
+Q QQ
Sbjct: 600 KQGQQ 604
Score = 43.1 bits (100), Expect = 4e-05
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D Q+ + ++QQ + QQ +Q QQ Q Q Q Q +
Sbjct: 569 RDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELA 623
Score = 43.1 bits (100), Expect = 4e-05
Identities = 12/62 (19%), Positives = 21/62 (33%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + + K + ++QQ + QQ +Q QQ Q Q Q Q
Sbjct: 561 DGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQA 620
Query: 224 QQ 225
+
Sbjct: 621 EL 622
Score = 42.8 bits (99), Expect = 5e-05
Identities = 14/64 (21%), Positives = 25/64 (39%)
Query: 163 GPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
G E ++ + Q+ + + Q + QQ +Q QQ Q Q Q Q +
Sbjct: 564 GVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELA 623
Query: 223 QQQS 226
+ Q+
Sbjct: 624 KAQN 627
Score = 42.4 bits (98), Expect = 6e-05
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ L + K Q ++ + ++QQ + QQ +Q QQ
Sbjct: 550 QLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMV 609
Query: 224 QQ 225
Q
Sbjct: 610 QA 611
Score = 42.0 bits (97), Expect = 1e-04
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q + + + + + QQ +Q QQ Q Q Q Q + + Q Q
Sbjct: 576 LIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQ 628
Score = 40.8 bits (94), Expect = 2e-04
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + + + E+ + ++ QQ +Q QQ Q Q Q Q + + Q Q
Sbjct: 570 DYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQT 629
Query: 225 QS 226
S
Sbjct: 630 LS 631
Score = 40.8 bits (94), Expect = 2e-04
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 169 PNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ ++ ++Q ++ + ++QQ + QQ +Q QQ Q Q
Sbjct: 560 LDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQ 617
Score = 38.1 bits (87), Expect = 0.002
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + ++Q ++ QQ +Q QQ Q Q Q Q + + Q Q
Sbjct: 581 VKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSL 632
Score = 37.0 bits (84), Expect = 0.004
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 153 DRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQ 212
+ + Q +K + Q + +Q QQ Q Q Q Q +
Sbjct: 567 MMRDYANKQLIQMGVKKPETPEEQQW----LVEAQQAKQGQQDPAMVQAQGVLLQGQAEL 622
Query: 213 QQQQQQQQQQQQQ 225
+ Q Q Q
Sbjct: 623 AKAQNQTLSLQID 635
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 41.2 bits (96), Expect = 9e-06
Identities = 16/53 (30%), Positives = 19/53 (35%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+ CE C + S L H RPY C C SF NL H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 40.5 bits (94), Expect = 1e-05
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQIN 114
Y C+ C L H H+ +RP+ CT C+ SF + N
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGN 44
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 40.6 bits (96), Expect = 9e-06
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQ-LIHSGIRPFKCTT 104
+PY+C C K+F + +L H H+G +P ++
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 33.3 bits (77), Expect = 0.005
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 89 THQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQC 144
+ +G +P++C C K+F+ ++L +H KP
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQ-------------NTSLIRHWRYYHTGEKPSGP 44
Score = 28.7 bits (65), Expect = 0.21
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY+C C + F +LI H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHW 32
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 43.6 bits (102), Expect = 2e-05
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q + + +Q+++Q Q+ ++ +
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVE 37
Score = 42.1 bits (98), Expect = 9e-05
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q + + +Q+++Q Q+ ++ + +
Sbjct: 2 AQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVEL 38
Score = 41.3 bits (96), Expect = 1e-04
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QA++ + + +Q+++Q Q+ ++ + + Q
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSE 43
Score = 40.9 bits (95), Expect = 2e-04
Identities = 4/37 (10%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +Q+++Q Q+ ++ + + Q ++
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 40.5 bits (94), Expect = 3e-04
Identities = 4/37 (10%), Positives = 17/37 (45%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +Q+++Q Q+ ++ + + Q + +
Sbjct: 9 RDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAA 45
Score = 38.2 bits (88), Expect = 0.001
Identities = 4/37 (10%), Positives = 16/37 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q+++Q Q+ ++ + + Q + +
Sbjct: 12 NRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPA 48
Score = 38.2 bits (88), Expect = 0.002
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q+++Q Q+ ++ + + Q +
Sbjct: 11 LNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAP 47
Score = 37.4 bits (86), Expect = 0.002
Identities = 4/43 (9%), Positives = 16/43 (37%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +Q+++Q Q+ ++ + + Q + +
Sbjct: 8 ARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARK 50
Score = 37.1 bits (85), Expect = 0.004
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q Q+ +Q+++Q Q+ ++ + + Q + ++
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARK 50
Score = 33.2 bits (75), Expect = 0.067
Identities = 6/52 (11%), Positives = 18/52 (34%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q D Q+++Q Q+ ++ + + Q + ++ +
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDAT 54
Score = 30.1 bits (67), Expect = 0.65
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++Q Q+ ++ + + Q + ++ S
Sbjct: 19 RKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATS 55
Score = 29.4 bits (65), Expect = 1.1
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
N + + +Q Q+ ++ + + Q + ++
Sbjct: 12 NRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSG 56
Score = 28.6 bits (63), Expect = 1.9
Identities = 3/45 (6%), Positives = 15/45 (33%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + ++Q Q+ ++ + + Q + ++
Sbjct: 12 NRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSG 56
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.5 bits (90), Expect = 5e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+PY C C+++F+++ L HQ +H+
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.0 bits (68), Expect = 0.067
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
KPY C C + F D L+ HQ
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQ 30
Score = 26.5 bits (59), Expect = 0.90
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 94 HSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQH 131
SG +P+ C C ++F + + L QH
Sbjct: 5 SSGEKPYSCAECKETFSD-------------NNRLVQH 29
>1vt0_M Portal protein, protein GP1; portal protein, DNA ejection,
molecular motor, DNA packaging podoviridae; 3.25A
{Enterobacteria phage P22} PDB: 3lj4_A
Length = 602
Score = 42.7 bits (99), Expect = 6e-05
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
P+ L + D + M+ +Q Q ++ + ++QQ + QQ
Sbjct: 540 GKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQA 599
Query: 221 QQ 222
+Q
Sbjct: 600 KQ 601
Score = 40.4 bits (93), Expect = 3e-04
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 166 DIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
P L Q + ++M + +Q Q ++ + ++QQ + QQ +Q
Sbjct: 544 QGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQ 601
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 39.3 bits (91), Expect = 6e-05
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 44 HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPF 100
KC C +F ++S+L + C+ C K LN + SG +
Sbjct: 19 QKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 36.2 bits (83), Expect = 7e-04
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 83 NSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFPKPY 142
+S + Q IH G R KC+ C F+ + S L++ K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRR-------------STLSRR--------KTP 40
Query: 143 QCDRCSQFFGDRMNLISHQ 161
C++C + L +
Sbjct: 41 MCEKCRKDSCQEAALNKDE 59
Score = 30.0 bits (67), Expect = 0.13
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 7/53 (13%)
Query: 57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
S + R KC C F L+ + C C K
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDS 49
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.2 bits (87), Expect = 2e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKC 102
+ Y C+ C K+FT +L HQ IH+
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 31.4 bits (72), Expect = 0.020
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 90 HQLIHSGIRPFKCTTCDKSF 109
+ + + C C K+F
Sbjct: 3 SGSSGTDSKSYNCNECGKAF 22
Score = 26.0 bits (58), Expect = 1.5
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K Y C+ C + F +L HQ
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQ 32
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 36.4 bits (84), Expect = 3e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
P+KC C++ FT L H+ H+
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 29.8 bits (67), Expect = 0.066
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 89 THQLIHSGIRPFKCTTCDKSF 109
+ +G PFKC+ CD+ F
Sbjct: 2 SSGSSGAGENPFKCSKCDRVF 22
Score = 27.5 bits (61), Expect = 0.45
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
P++C +C + F R L+ H+
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHE 32
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 35.7 bits (83), Expect = 4e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
RP+ C C K FT S L H+ H+G +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 37.1 bits (85), Expect = 0.001
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 44 HKCEYCHKVFDQQSSLLSH-----NCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIR 98
+C+ C +D L H + + S ++L + +
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 99 PFKCTTCDKSF 109
KC C SF
Sbjct: 80 VLKCMYCGHSF 90
Score = 34.7 bits (79), Expect = 0.005
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 13/109 (11%)
Query: 54 DQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLI--HSGIRPFKCTTCDKSFVN 111
SS + ++C C ++ L H H + + +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 112 QINPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISH 160
+ S + K +C C F +L H
Sbjct: 62 KPRKRSLLEMEGKEDA-----------QKVLKCMYCGHSFESLQDLSVH 99
Score = 34.4 bits (78), Expect = 0.007
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 82 TNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP-- 139
++ + + I +G F+C C ++ T L H H+
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAY-------------DTLVELTVHMNETGHYRDD 48
Query: 140 --KPYQCDRCSQFFGDRMNLISHQCGPEDIKP 169
+ + + +L+ + + K
Sbjct: 49 NHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Score = 30.9 bits (69), Expect = 0.13
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 15/87 (17%)
Query: 19 IHGNDNAYKCHQCQRLIFLSANAGVH---------------KCEYCHKVFDQQSSLLSHN 63
I + ++C C VH ++ SLL
Sbjct: 13 IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 64 CPQMKPRPYKCDTCEKSFTNSQNLNTH 90
+ + KC C SF + Q+L+ H
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVH 99
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.6 bits (80), Expect = 0.001
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIH 94
+P++C C++SF+ S +L H+ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 90 HQLIHSGIRPFKCTTCDKSF 109
+GI+PF+C CD+SF
Sbjct: 2 STRGSTGIKPFQCPDCDRSF 21
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function;
NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Length = 116
Score = 35.6 bits (82), Expect = 0.003
Identities = 3/42 (7%), Positives = 8/42 (19%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E I+ + Q + + +
Sbjct: 3 PELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVGA 44
Score = 29.9 bits (67), Expect = 0.25
Identities = 1/31 (3%), Positives = 6/31 (19%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + Q + + +
Sbjct: 10 ECRLAQLKNNSGGTNGDRNSGANNGGGENSA 40
Score = 29.1 bits (65), Expect = 0.44
Identities = 2/30 (6%), Positives = 7/30 (23%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + Q + + + S
Sbjct: 10 ECRLAQLKNNSGGTNGDRNSGANNGGGENS 39
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 35.6 bits (82), Expect = 0.003
Identities = 4/40 (10%), Positives = 17/40 (42%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ + ++ Q+ + Q + QQ+ + ++ + +
Sbjct: 2 SSGSSGLRRQRLAELQAKHGDPGDAAQQEAKHREAEMRNS 41
Score = 32.9 bits (75), Expect = 0.027
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+Q+ + Q + QQ+ + ++ + + S
Sbjct: 10 RQRLAELQAKHGDPGDAAQQEAKHREAEMRNS 41
Score = 32.5 bits (74), Expect = 0.031
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q+ + Q + QQ+ + ++ + +
Sbjct: 10 RQRLAELQAKHGDPGDAAQQEAKHREAEMRNS 41
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 33.6 bits (77), Expect = 0.004
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 69 PRPYKCDTCEKSFTNSQNLNTHQLIH 94
PR Y C C++ F ++Q L H +H
Sbjct: 4 PRSYTCSFCKREFRSAQALGGHMNVH 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 53 FDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSF 109
+SS L + C C F++S +L H C C K F
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEF 110
Score = 31.4 bits (70), Expect = 0.093
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 42 GVHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTH 90
C C F SL H + C C+K FT++ + H
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDH 119
Score = 30.3 bits (67), Expect = 0.27
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 20/106 (18%)
Query: 61 SHNCPQMKPRPYKCD----TCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
H + R + + + L I F C C F
Sbjct: 32 YHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFS------ 85
Query: 117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQC 162
+ +L QH H C C + F + + H C
Sbjct: 86 -------SSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVC 121
Score = 28.0 bits (61), Expect = 1.6
Identities = 16/84 (19%), Positives = 29/84 (34%)
Query: 78 EKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSH 137
+K +N + + H + R + T K + I T H P + + + S
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 138 FPKPYQCDRCSQFFGDRMNLISHQ 161
+ C C F ++L H
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHI 94
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.1 bits (76), Expect = 0.005
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 68 KPRPYKCD--TCEKSFTNSQNLNTHQLIHSGIR 98
K + + C C K + + +L H H+G R
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 32.7 bits (75), Expect = 0.006
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
R + C+ C ++F ++L H H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 98 RPFKCTTCDKSFVNQ 112
R F C C ++F Q
Sbjct: 1 RSFVCEVCTRAFARQ 15
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 35.9 bits (83), Expect = 0.006
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ I V L+ ++D Q I+ + + QQ + QQQ +Q + Q
Sbjct: 8 QKILEEVRILEQIGVSHDAQ--IQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTA 65
Query: 225 Q 225
Sbjct: 66 N 66
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 36.0 bits (82), Expect = 0.009
Identities = 13/52 (25%), Positives = 16/52 (30%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q+ +QA M Q Q Q QQQQQ +
Sbjct: 66 QEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Score = 35.6 bits (81), Expect = 0.013
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+Q QQ Q Q Q
Sbjct: 65 AQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV 101
Score = 34.0 bits (77), Expect = 0.033
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M Q Q Q QQQQQ +
Sbjct: 83 MHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPA 120
Score = 34.0 bits (77), Expect = 0.034
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
M QQQ Q+Q QQ Q
Sbjct: 56 MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 34.0 bits (77), Expect = 0.035
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q+Q QQ Q +
Sbjct: 58 QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Score = 34.0 bits (77), Expect = 0.038
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q+Q QQ Q Q
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Score = 34.0 bits (77), Expect = 0.041
Identities = 8/38 (21%), Positives = 9/38 (23%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ +
Sbjct: 81 NDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Score = 33.3 bits (75), Expect = 0.062
Identities = 7/37 (18%), Positives = 9/37 (24%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQ Q+Q QQ Q +
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95
Score = 33.3 bits (75), Expect = 0.071
Identities = 6/38 (15%), Positives = 7/38 (18%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q+Q QQ Q
Sbjct: 59 QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96
Score = 33.3 bits (75), Expect = 0.072
Identities = 8/37 (21%), Positives = 9/37 (24%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q+Q QQ Q
Sbjct: 55 SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91
Score = 33.3 bits (75), Expect = 0.074
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q Q QQQQQ Q S
Sbjct: 88 VPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPS 125
Score = 32.9 bits (74), Expect = 0.078
Identities = 8/38 (21%), Positives = 9/38 (23%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q+Q QQ Q
Sbjct: 55 SMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 32.9 bits (74), Expect = 0.083
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ QQQ Q+Q QQ Q
Sbjct: 53 VPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPL 90
Score = 32.9 bits (74), Expect = 0.085
Identities = 5/38 (13%), Positives = 6/38 (15%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+Q QQ Q
Sbjct: 61 FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ 98
Score = 32.9 bits (74), Expect = 0.096
Identities = 8/38 (21%), Positives = 9/38 (23%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q Q QQQQQ
Sbjct: 85 LHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122
Score = 32.5 bits (73), Expect = 0.12
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ Q Q Q QQQQQ Q +
Sbjct: 90 LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127
Score = 32.1 bits (72), Expect = 0.13
Identities = 8/37 (21%), Positives = 9/37 (24%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
QQQ Q+Q QQ Q
Sbjct: 52 AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88
Score = 32.1 bits (72), Expect = 0.14
Identities = 5/38 (13%), Positives = 6/38 (15%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+Q QQ Q
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97
Score = 32.1 bits (72), Expect = 0.14
Identities = 8/37 (21%), Positives = 8/37 (21%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Score = 32.1 bits (72), Expect = 0.15
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q+Q QQ Q +
Sbjct: 50 QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN 87
Score = 32.1 bits (72), Expect = 0.17
Identities = 8/38 (21%), Positives = 9/38 (23%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
QQQ Q+Q QQ Q
Sbjct: 51 GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88
Score = 31.7 bits (71), Expect = 0.18
Identities = 10/37 (27%), Positives = 11/37 (29%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ Q Q+
Sbjct: 95 AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131
Score = 31.7 bits (71), Expect = 0.19
Identities = 10/38 (26%), Positives = 10/38 (26%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ Q Q
Sbjct: 95 AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132
Score = 31.7 bits (71), Expect = 0.22
Identities = 9/38 (23%), Positives = 9/38 (23%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ Q
Sbjct: 93 PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
Score = 31.3 bits (70), Expect = 0.27
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M Q QQQ Q+Q QQ Q
Sbjct: 47 MPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMH 84
Score = 31.3 bits (70), Expect = 0.29
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
MQ Q Q QQQQQ Q Q +
Sbjct: 97 MQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133
Score = 31.3 bits (70), Expect = 0.30
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M Q Q QQQ Q+Q QQ Q +
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77
Score = 30.9 bits (69), Expect = 0.36
Identities = 10/38 (26%), Positives = 11/38 (28%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M Q QQQ Q+Q QQ Q
Sbjct: 45 MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMND 82
Score = 30.9 bits (69), Expect = 0.37
Identities = 10/37 (27%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQQQQ Q Q
Sbjct: 97 MQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133
Score = 30.6 bits (68), Expect = 0.43
Identities = 9/37 (24%), Positives = 9/37 (24%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q QQ Q Q Q
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGM 47
Score = 30.6 bits (68), Expect = 0.53
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q+Q QQ Q S
Sbjct: 42 YGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79
Score = 30.2 bits (67), Expect = 0.68
Identities = 9/38 (23%), Positives = 10/38 (26%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q+Q QQ
Sbjct: 37 AAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQID 74
Score = 29.4 bits (65), Expect = 1.1
Identities = 9/37 (24%), Positives = 10/37 (27%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q+Q QQ
Sbjct: 39 GMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Score = 29.4 bits (65), Expect = 1.2
Identities = 8/37 (21%), Positives = 8/37 (21%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q QQ Q Q Q
Sbjct: 13 QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPP 49
Score = 29.0 bits (64), Expect = 1.5
Identities = 8/37 (21%), Positives = 9/37 (24%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q+Q Q
Sbjct: 36 AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72
Score = 28.6 bits (63), Expect = 1.9
Identities = 8/36 (22%), Positives = 9/36 (25%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q Q QQQ Q+Q
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68
Score = 28.6 bits (63), Expect = 2.2
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q QQQ Q+Q
Sbjct: 34 DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Score = 28.3 bits (62), Expect = 2.8
Identities = 7/38 (18%), Positives = 8/38 (21%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q QQQ Q+Q
Sbjct: 33 QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70
Score = 27.9 bits (61), Expect = 3.9
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 189 MQQQQQQ---QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
M +++ Q Q Q Q QQ Q Q S
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMS 41
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 34.8 bits (80), Expect = 0.016
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ A Q ++ + + + QQQQQQQQQQQQQ
Sbjct: 358 DAALAAAQTNAAAMATLEKLMKAFESLKSFQQQQQQQQQQQQQQ 401
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.022
Identities = 26/235 (11%), Positives = 62/235 (26%), Gaps = 64/235 (27%)
Query: 17 LCIHG--------------NDNAYKCHQCQRLIFLSANAGVHKCEYCHKVFDQQSSLLSH 62
+ I G +C ++ +L+ + C V + LL
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQ 208
Query: 63 -------NCPQMKPRPYKCDTCEKSFTNSQNLNTHQ---LI------HSGIRPF--KC-- 102
+ + + ++ L+ F C
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 103 --TTCDKSFVNQINPTSTH-----------TPTYTKSNLAQHSCMNSHFPK-PYQCDRCS 148
TT K + ++ +T TP KS L + ++ P + +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTN 326
Query: 149 QFFGDRMNLISHQCGPEDIKPNVDNLQT--QISNNDEQAKIKMQQQQQQQQQQQQ 201
R+++I E I+ + ++ + I+ + + ++
Sbjct: 327 PR---RLSII-----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 30.6 bits (68), Expect = 0.42
Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 36/211 (17%)
Query: 1 MFTQTPNLVL--FSQQTLLCIHGNDNAYKCHQCQRLIFLSAN--AGVHKCEYCHKVFDQQ 56
+ +V+ + +L+ ++ + + +H+ + D
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHY 453
Query: 57 SSLLSHNCPQMKPRPYKCDTCEKSFTNS---QNLNTH--QLIHSG-IRPFKCTTCDKSFV 110
+ P+ + D + + ++ H + H + F+ D F+
Sbjct: 454 N----------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 111 NQ--INPTSTHTPTYTKSNLAQHSCMNSHFPKPYQCDRC---SQFFGDRMNLISHQCGPE 165
Q + ++ + + N Q F KPY CD + ++ + +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQ----QLKFYKPYICDNDPKYERLVNAILDFL-PKIEEN 558
Query: 166 DIK-PNVDNLQTQISNNDEQAKIKMQQQQQQ 195
I D L+ + DE + +Q Q+
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 30.6 bits (68), Expect = 0.54
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)
Query: 125 KSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQ 184
K+ +A C++ QC + F +NL + PE + + L QI N
Sbjct: 163 KTWVALDVCLS----YKVQCKMDFKIFW--LNL-KNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQ 211
+ + Q + ++ + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKP 242
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 34.6 bits (79), Expect = 0.023
Identities = 17/209 (8%), Positives = 54/209 (25%), Gaps = 3/209 (1%)
Query: 21 GNDNAYKCHQCQRLIFLSANAGVH-KCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEK 79
KC C + V C H + + +H ++ +
Sbjct: 126 LIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDREVLIVVVRDAKNLV 185
Query: 80 SFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQHSCMNSHFP 139
+ + + + P + + + + + S
Sbjct: 186 PMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEI 245
Query: 140 KPYQCDRCSQFFGDRMNLIS--HQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQ 197
+ + F G IS + G + + + + N + ++ +Q+
Sbjct: 246 WDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVPPEGSEGNEELRQK 305
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++ + Q + +++ + +
Sbjct: 306 FERAKIGQGTKAPEEKTANTISKFDNNGN 334
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 34.2 bits (77), Expect = 0.028
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
D T+ E ++K + Q + + Q++ +Q +Q+++ Q+ +Q
Sbjct: 479 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 532
Score = 34.2 bits (77), Expect = 0.033
Identities = 9/52 (17%), Positives = 30/52 (57%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
LQT + +++ +I++++ + + Q + + Q++ +Q +Q+++ Q+
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527
Score = 33.4 bits (75), Expect = 0.055
Identities = 8/56 (14%), Positives = 28/56 (50%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ + + + AK+ + Q++ +Q +Q+++ Q+ +Q ++ + + Q
Sbjct: 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 543
Score = 33.4 bits (75), Expect = 0.057
Identities = 8/51 (15%), Positives = 25/51 (49%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + E+ K + Q + + Q++ +Q +Q+++ Q+ +Q ++
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEK 534
Score = 31.8 bits (71), Expect = 0.17
Identities = 7/53 (13%), Positives = 22/53 (41%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
S + Q++ +Q +Q+++ Q+ +Q ++ + + Q +
Sbjct: 492 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544
Score = 31.5 bits (70), Expect = 0.21
Identities = 7/52 (13%), Positives = 26/52 (50%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +I +A+ + + Q++ +Q +Q+++ Q+ +Q ++ ++
Sbjct: 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537
Score = 31.5 bits (70), Expect = 0.22
Identities = 8/53 (15%), Positives = 26/53 (49%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ I D+ K ++ + ++ + + Q + + Q++ +Q +Q+++S
Sbjct: 471 MTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523
Score = 31.1 bits (69), Expect = 0.27
Identities = 6/61 (9%), Positives = 29/61 (47%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E + + ++ +++ +++ + + Q + + Q++ +Q +Q+++ Q+
Sbjct: 469 ESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL 528
Query: 225 Q 225
+
Sbjct: 529 K 529
Score = 31.1 bits (69), Expect = 0.27
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +Q KM+ + Q ++Q++ + Q+Q+Q ++ Q++ +
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 571
Score = 31.1 bits (69), Expect = 0.28
Identities = 8/61 (13%), Positives = 33/61 (54%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ + V+ ++ + + + +MQ++ +Q +Q+++ Q+ +Q ++ + + Q +
Sbjct: 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 544
Query: 225 Q 225
+
Sbjct: 545 E 545
Score = 31.1 bits (69), Expect = 0.33
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q S + +Q +Q+++ Q+ +Q ++ + + Q ++Q++
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548
Score = 30.7 bits (68), Expect = 0.45
Identities = 8/49 (16%), Positives = 28/49 (57%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q++ E ++++ ++Q++ + Q+Q+Q ++ Q++ + + + Q
Sbjct: 530 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578
Score = 30.3 bits (67), Expect = 0.55
Identities = 4/51 (7%), Positives = 25/51 (49%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ +++ Q + +++++ + ++ + + Q + + Q++ +Q +
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME 518
Score = 29.9 bits (66), Expect = 0.65
Identities = 9/56 (16%), Positives = 28/56 (50%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++ L ++ N+ Q + ++ + Q+Q+Q ++ Q++ + + + Q Q +
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582
Score = 29.5 bits (65), Expect = 0.87
Identities = 7/43 (16%), Positives = 24/43 (55%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + K +Q +Q+++ Q+ +Q ++ + + Q ++Q++
Sbjct: 507 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 549
Score = 29.5 bits (65), Expect = 1.1
Identities = 8/53 (15%), Positives = 26/53 (49%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ Q + E+ + Q ++Q++ + Q+Q+Q ++ Q++ + + +
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 575
Score = 28.8 bits (63), Expect = 1.5
Identities = 6/52 (11%), Positives = 25/52 (48%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L+++ S D + +++++ + ++ + + Q + + Q++ +Q
Sbjct: 465 LKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM 516
Score = 28.8 bits (63), Expect = 1.6
Identities = 8/45 (17%), Positives = 25/45 (55%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
EQ + + Q+Q+Q ++ Q++ + + + Q Q + +++++
Sbjct: 544 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
Score = 28.8 bits (63), Expect = 1.7
Identities = 6/52 (11%), Positives = 25/52 (48%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + + + ++Q ++ + + Q ++Q++ + Q+Q+Q ++
Sbjct: 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564
Score = 28.4 bits (62), Expect = 2.2
Identities = 7/49 (14%), Positives = 25/49 (51%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + +K+Q+Q+Q ++ Q++ + + + Q Q + ++++
Sbjct: 540 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
Score = 28.0 bits (61), Expect = 2.7
Identities = 6/46 (13%), Positives = 26/46 (56%)
Query: 181 NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+++ + ++ Q+Q+Q ++ Q++ + + + Q Q + ++++
Sbjct: 544 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKAC 589
Score = 28.0 bits (61), Expect = 2.8
Identities = 8/61 (13%), Positives = 30/61 (49%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
E +K + ++ ++ + + + Q+Q+Q ++ Q++ + + + Q Q + ++
Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
Query: 225 Q 225
+
Sbjct: 586 R 586
Score = 27.6 bits (60), Expect = 4.0
Identities = 9/60 (15%), Positives = 30/60 (50%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ + ++N + Q+ E+ Q+Q+Q ++ Q++ + + + Q Q + ++++
Sbjct: 529 KQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 33.8 bits (76), Expect = 0.035
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 170 NVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ N Q+ N + + + QQQQQQ+ ++Q Q QQQ+++
Sbjct: 148 DTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGG 202
Score = 32.6 bits (73), Expect = 0.10
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + QQQQQQ+ ++Q Q QQQ+++ S
Sbjct: 169 PDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGS 203
Score = 29.9 bits (66), Expect = 0.67
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 178 ISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
SN + Q + + + QQQQQQ+ ++Q Q QQ
Sbjct: 149 TSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQ 197
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.7 bits (76), Expect = 0.046
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 66 QMKPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
Y+C C + +L+ H H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 28.3 bits (62), Expect = 2.6
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 115 PTSTHTPTYTKSNLAQHSCMNSHFPKP-----YQCDRCSQFFGDRMNLISHQ 161
P ST T + +++H P YQC CS ++L +H
Sbjct: 149 PMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 33.2 bits (76), Expect = 0.049
Identities = 4/39 (10%), Positives = 12/39 (30%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
KM ++ + + + Q+ Q+ +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 39
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 32.2 bits (73), Expect = 0.057
Identities = 7/61 (11%), Positives = 27/61 (44%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+++ +LQ ++ + + ++ Q+Q Q+ Q +Q + ++ +++
Sbjct: 37 SELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERG 96
Query: 225 Q 225
+
Sbjct: 97 K 97
Score = 31.8 bits (72), Expect = 0.081
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
D++ + LQ+ + +D K Q+Q Q+ Q +Q + ++ +++ + +
Sbjct: 44 TDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTR 101
Score = 30.2 bits (68), Expect = 0.29
Identities = 8/61 (13%), Positives = 25/61 (40%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
++ +++ + + KM++ Q + + + ++ Q+Q Q+ Q +Q
Sbjct: 26 NTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQ 85
Query: 225 Q 225
Sbjct: 86 D 86
Score = 29.1 bits (65), Expect = 0.73
Identities = 9/61 (14%), Positives = 24/61 (39%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ K LQ ++ + K + + + ++ Q+Q Q+ Q +Q + +
Sbjct: 30 NEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRAR 89
Query: 225 Q 225
+
Sbjct: 90 R 90
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 29.7 bits (66), Expect = 0.073
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C++ F + L H IH+G
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTG 28
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.081
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHS 95
K + +KC+ CEK+F+ S+ L H+ IH+
Sbjct: 9 KEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.8 bits (71), Expect = 0.11
Identities = 9/61 (14%), Positives = 31/61 (50%)
Query: 164 PEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
PE I+ + + ++ D +K+ Q+ +++ ++ ++ Q+Q +Q ++ + + +
Sbjct: 99 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Query: 224 Q 224
Sbjct: 159 A 159
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.4 bits (63), Expect = 0.16
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 70 RPYKCD--TCEKSFTNSQNLNTHQLIHS 95
RPY CD C+K+F + +L H+ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.18
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PYKC C + NLN H H+G
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTG 34
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei
structure initiative; 2.40A {Streptococcus pneumoniae}
SCOP: a.281.1.2
Length = 113
Score = 30.1 bits (68), Expect = 0.20
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
D +A Q++ Q+ Q Q Q + + +Q Q
Sbjct: 33 AADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQG 79
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 31.7 bits (71), Expect = 0.20
Identities = 7/62 (11%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ ++ ++ +++ ++ + +++ K ++ Q + + Q Q Q +Q+
Sbjct: 16 QMLEQHLQDVRKRVQDLEQKMK-VVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKM 74
Query: 225 QS 226
Q
Sbjct: 75 QQ 76
Score = 30.6 bits (68), Expect = 0.41
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + +K Q Q Q +Q+ QQ +Q Q ++
Sbjct: 41 NLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSI 91
Score = 28.3 bits (62), Expect = 2.5
Identities = 7/65 (10%), Positives = 19/65 (29%)
Query: 161 QCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
+ + ++ + + + KM+ + Q + + Q Q Q
Sbjct: 8 AAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQ 67
Query: 221 QQQQQ 225
+Q
Sbjct: 68 SVTRQ 72
Score = 26.7 bits (58), Expect = 7.6
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
L++Q D + +Q+ QQ +Q Q ++ + +
Sbjct: 53 LKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEY 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 30.3 bits (68), Expect = 0.21
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
MQ Q Q Q + QQQ Q QQ+Q+ Q +
Sbjct: 1 MQNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELT 37
Score = 26.4 bits (58), Expect = 4.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 218
++Q Q + QQQ Q QQ+Q+ Q +
Sbjct: 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELT 37
Score = 26.4 bits (58), Expect = 4.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
I Q Q Q + QQQ Q QQ+Q+ Q +
Sbjct: 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELT 37
Score = 26.0 bits (57), Expect = 6.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q Q Q Q + QQQ Q QQ+Q+ Q
Sbjct: 2 QNIPPQVQAMLGQLESYQQQLQLVVQQKQKVQL 34
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.2 bits (62), Expect = 0.23
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
RPY C C K F+ + TH +H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.3 bits (70), Expect = 0.23
Identities = 5/53 (9%), Positives = 25/53 (47%)
Query: 174 LQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ + +++ ++K Q ++++ + +++ + +Q++ + Q Q
Sbjct: 358 KEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQG 410
Score = 28.2 bits (62), Expect = 2.5
Identities = 7/84 (8%), Positives = 36/84 (42%)
Query: 142 YQCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQ 201
Y+ R + P ++ + + + ++ + +M+Q Q+ ++++
Sbjct: 295 YELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKE 354
Query: 202 QQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++ +++ ++ + ++ Q +
Sbjct: 355 AELKEAEKELHEKFDRLKKLHQDE 378
Score = 27.4 bits (60), Expect = 4.7
Identities = 5/56 (8%), Positives = 25/56 (44%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ + + ++ ++ K Q ++++ + +++ + +Q++ + Q Q
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQ 409
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.9 bits (66), Expect = 0.24
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 22 NDNAYKCHQCQRLIFLSANAGVHK--------CEYCHKVFDQQSSLLSHNCPQMKPRPYK 73
N Y+C C + G H+ C YC F H + + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHE-SKCEYKKLT 71
Query: 74 CDTCEKSFTNSQNLNTHQ 91
C C ++F +S ++ HQ
Sbjct: 72 CLECMRTFKSSFSIWRHQ 89
Score = 28.3 bits (62), Expect = 0.89
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 17/105 (16%)
Query: 57 SSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPT 116
SS S P Y+C C ++ +H+ + C C F
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRF------- 52
Query: 117 STHTPTYTKSNLAQHSCMNSHFPKPYQCDRCSQFFGDRMNLISHQ 161
++ +H + K C C + F ++ HQ
Sbjct: 53 ------FSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 30.4 bits (68), Expect = 0.25
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 173 NLQTQI--SNNDE-----QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+L ++ DE A +M+Q + + + ++ +Q Q++ ++
Sbjct: 101 DLDVELETRREDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTNSHHHH 160
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 31.4 bits (70), Expect = 0.27
Identities = 8/62 (12%), Positives = 27/62 (43%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+++ V N++ ++ + + K Q + + + Q ++ + + Q+Q+Q
Sbjct: 5 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLL 64
Query: 225 QS 226
+
Sbjct: 65 KK 66
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 165 EDIKPNVDNLQTQISN-NDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
++K V ++ +I + D Q + + + Q ++ + + Q+Q+Q ++
Sbjct: 12 RNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLML 71
Query: 224 QQ 225
Sbjct: 72 DN 73
Score = 28.3 bits (62), Expect = 2.3
Identities = 6/52 (11%), Positives = 21/52 (40%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q ++ + K K+ + + + + Q + + + Q ++ + +S
Sbjct: 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKS 55
Score = 27.1 bits (59), Expect = 4.9
Identities = 7/59 (11%), Positives = 24/59 (40%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
I+ + +L+ D + K ++ + + Q+Q+Q ++ ++++
Sbjct: 19 MCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKE 77
Score = 26.4 bits (57), Expect = 9.3
Identities = 7/54 (12%), Positives = 21/54 (38%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
LQ + + AK +Q+Q ++ ++++ + + + Q+
Sbjct: 41 TLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQN 94
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein
structure in midwest center for structural genomics,
unknown function; HET: MSE; 1.96A {Bacillus subtilis}
SCOP: a.281.1.2
Length = 117
Score = 29.7 bits (67), Expect = 0.27
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
N DE AK + + Q + QQ+Q ++ Q++ Q Q+ Q
Sbjct: 33 NADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQ 79
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 31.3 bits (70), Expect = 0.28
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 165 EDIKPNVDNLQTQISNN-DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
E+++ + + ++ Q +Q Q+ + Q Q Q Q Q++ ++ QQ+Q
Sbjct: 22 EELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQ 81
Query: 224 QQ 225
Sbjct: 82 VS 83
Score = 29.0 bits (64), Expect = 1.3
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+Q Q S + ++ Q Q++ ++ QQ+Q + Q++ Q QQ
Sbjct: 46 IIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQY 98
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA,
protein-protein; 2.40A {Haloarcula marismortui} SCOP:
g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1*
1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1*
1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Length = 73
Score = 28.2 bits (63), Expect = 0.45
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVF 53
YKC C A+ + C +C
Sbjct: 28 YKCPVCGFPKLKRASTSIWVCGHCGYKI 55
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.4 bits (69), Expect = 0.50
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 74 CDTCEKSFTNSQNLNTHQLIHSGIRPFKCTTCDKSFVNQINPTSTHTPTYTKSNLAQ--- 130
C +C + TH+ +C +C + N P S+L
Sbjct: 15 CQSCHAKPIKVTDSETHE-------NAQCKSCHGEYAELANDKLQFDPH--NSHLGDINC 65
Query: 131 HSCMNSHFPKPYQCDRCSQFFGDRM 155
SC H + C+ C F M
Sbjct: 66 TSCHKGHEEPKFYCNECHSFDIKPM 90
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 28.6 bits (64), Expect = 0.57
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 YKCHQCQRLIFLSANAGVHKCEYCHKVF 53
Y C C + G+ C+ C KV
Sbjct: 37 YFCEFCGKFAVKRKAVGIWGCKDCGKVK 64
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural
genomics, PSI-2, protein structure initiative; 2.90A
{Geobacillus stearothermophilus} SCOP: a.281.1.2
Length = 122
Score = 28.6 bits (64), Expect = 0.69
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 180 NNDEQAK---IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
DE A ++ Q + ++Q + + +Q Q+ QQ
Sbjct: 36 RRDETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQQ 82
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.4 bits (65), Expect = 0.70
Identities = 8/52 (15%), Positives = 15/52 (28%)
Query: 43 VHKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDTCEKSFTNSQNLNTHQLIH 94
V E K S H + + + E+ N ++L +
Sbjct: 180 VWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 29.7 bits (66), Expect = 0.70
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
I ++++ +Q+Q+Q Q + Q Q+
Sbjct: 2 SHMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPV 42
Score = 28.9 bits (64), Expect = 1.4
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++++ +Q+Q+Q Q + Q Q+
Sbjct: 9 SDSVSNAREERMALRQEQEQLQSRIQSLMQRAPV 42
Score = 28.9 bits (64), Expect = 1.4
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ +L +SN E+ +M +Q+Q+Q Q + Q Q+ Q Q +Q
Sbjct: 5 IASLSDSVSNAREE---RMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQC 57
Score = 28.6 bits (63), Expect = 1.7
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
++++ +Q+Q+Q Q + Q
Sbjct: 2 SHMIASLSDSVSNAREERMALRQEQEQLQSRIQS 35
Score = 28.2 bits (62), Expect = 2.5
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++++ +Q+Q+Q Q + Q Q++
Sbjct: 3 HMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRA 40
Score = 27.4 bits (60), Expect = 4.0
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
I++ + +++ +Q+Q+Q Q + Q Q+ Q
Sbjct: 2 SHMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNS 49
Score = 27.0 bits (59), Expect = 5.6
Identities = 7/61 (11%), Positives = 22/61 (36%)
Query: 165 EDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
P Q ++ EQ + Q + QQ +++++ ++ + ++
Sbjct: 37 MQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVD 96
Query: 225 Q 225
+
Sbjct: 97 E 97
Score = 26.2 bits (57), Expect = 9.0
Identities = 4/33 (12%), Positives = 12/33 (36%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
++++ +Q+Q+Q Q +
Sbjct: 2 SHMIASLSDSVSNAREERMALRQEQEQLQSRIQ 34
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 29.9 bits (66), Expect = 0.71
Identities = 10/83 (12%), Positives = 31/83 (37%)
Query: 143 QCDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQ 202
R +Q + +++ V N++ ++ + + K Q + + +
Sbjct: 118 NAQRFNQAQSGNIQSTVMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTL 177
Query: 203 QQQQQQQQQQQQQQQQQQQQQQQ 225
Q ++ + + Q+Q+Q +
Sbjct: 178 QNREHETNGVAKSDQKQEQLLLK 200
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 30.0 bits (67), Expect = 0.74
Identities = 7/82 (8%), Positives = 20/82 (24%)
Query: 145 DRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQ 204
C + L C + + + + + K Q
Sbjct: 68 GGCKHPLDELGVLCPTGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMID 127
Query: 205 QQQQQQQQQQQQQQQQQQQQQS 226
+ + Q+Q++ + +
Sbjct: 128 NKLVKTQKQRKDNDIILSEYNT 149
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.7 bits (58), Expect = 0.86
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHS 95
YKC CE+SF L+ HQ +H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.4 bits (65), Expect = 0.90
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + Q + + +Q++Q +Q + ++ + Q+++
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKK 91
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 29.5 bits (65), Expect = 0.93
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +QQ + Q + QQ + Q + + + + Q
Sbjct: 1 QIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQDP 37
Score = 28.0 bits (61), Expect = 3.2
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+++QQ + Q + QQ + Q + + + + Q
Sbjct: 1 QIEQQSPWEFQGSEVWQQHRYQSPRACRLENLRAQD 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.8 bits (58), Expect = 1.1
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+PY C C F ++ H H G
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A
{Homo sapiens}
Length = 146
Score = 28.5 bits (63), Expect = 1.2
Identities = 3/44 (6%), Positives = 24/44 (54%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ ++K + ++ ++ + ++++++ ++ + QQ+ ++
Sbjct: 101 PKAEELKAELLKRYTKEYTEYNEEKKKEAEELARNMAIQQELEK 144
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 28.7 bits (64), Expect = 1.3
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 187 IKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K+ Q Q +Q+ + Q+ +++ +S
Sbjct: 3 SKIFQYNQHKQETNETLNHHNCSNMQRAFNLKEEMLTNKS 42
Score = 26.4 bits (58), Expect = 7.9
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
Q +Q+ + Q+ +++ +
Sbjct: 8 YNQHKQETNETLNHHNCSNMQRAFNLKEEMLTNKSIDC 45
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A
{Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A
1sru_A
Length = 145
Score = 28.2 bits (63), Expect = 1.3
Identities = 9/40 (22%), Positives = 10/40 (25%)
Query: 184 QAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
MQ +Q Q Q Q QQ Q
Sbjct: 104 NVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQG 143
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.3 bits (57), Expect = 1.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
RP+ C C +FT N H +H+
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.3 bits (52), Expect = 6.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 94 HSGIRPFKCTTCDKSFVNQIN 114
SG RPF C C +F + N
Sbjct: 2 SSGKRPFVCRICLSAFTTKAN 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.9 bits (65), Expect = 1.4
Identities = 4/47 (8%), Positives = 19/47 (40%)
Query: 179 SNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + KI Q++ +Q ++ + ++ + + ++ +
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD 968
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 28.8 bits (65), Expect = 1.6
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+K K+ + QQ++ Q++ + ++ + +
Sbjct: 10 SKNKLSKGQQRRVNANHQRRLKTSAEKADYDDNLFGEPAE 49
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein;
viral protein, viral membrane fusion, hairpin, chimera;
HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Length = 463
Score = 28.6 bits (64), Expect = 1.7
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ A Q Q+ +Q QQ+ Q
Sbjct: 359 DAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYN 401
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia
coli} SCOP: a.8.7.1
Length = 213
Score = 28.2 bits (62), Expect = 1.7
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 171 VDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + S D QA+I+ Q Q +Q + QQ Q + + Q+ + +
Sbjct: 143 IKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRAQKDRATRN 197
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 28.6 bits (63), Expect = 1.7
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+A + Q QQ + Q + Q ++ + Q Q +
Sbjct: 262 GPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDA 305
Score = 28.6 bits (63), Expect = 1.8
Identities = 8/51 (15%), Positives = 18/51 (35%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q Q + Q + + ++ + Q Q + + Q +QQ +
Sbjct: 271 QMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEA 321
Score = 28.2 bits (62), Expect = 2.4
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 175 QTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q + Q + + Q QQ + Q + Q ++ +
Sbjct: 242 DLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDR 292
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 1.9
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTHQLIHSG 96
+ + ++C C + F +L HQ++H G
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEHQVLHMG 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 28.5 bits (64), Expect = 1.9
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 177 QISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 220
I + +IK + + + Q+QQ + + + + +QQ+
Sbjct: 61 VIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQR 104
Score = 27.7 bits (62), Expect = 3.0
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
I +Q + Q ++ + + + Q+QQ + + + +
Sbjct: 60 GVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYS 100
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.5 bits (55), Expect = 2.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIH 94
Y C CE+ F N + + H L+H
Sbjct: 10 YDCHICERKFKNELDRDRHMLVH 32
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 28.1 bits (62), Expect = 2.4
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 144 CDRCSQFFGDRMNLISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQ 203
C D L C ++ + + ++ Q Q
Sbjct: 62 AGGCLHADPDLGVLCPTGCQLQEALLQQERPIRNSVDELNN-NVEAVSQTSSSSFQYMYL 120
Query: 204 QQQQQQQQQQQQQQQQQQQQQQS 226
+ Q++Q+Q + + + S
Sbjct: 121 LKDLWQKRQKQVKDNENVVNEYS 143
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 28.2 bits (63), Expect = 2.4
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+ A Q Q + +Q +++Q +++++
Sbjct: 358 DAALAAAQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEE 397
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.6 bits (55), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 71 PYKCDTCEKSFTNSQNLNTHQLIHSG 96
+C C K F +S L HQ +H+G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.0 bits (59), Expect = 2.6
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 40 NAGVHKCEYCHKVFDQQSSLLSH----NCPQMKPRPYKCDTCEKSFTNSQNLNTHQL-IH 94
G ++C+YC + H + + Y C C L+ H L H
Sbjct: 15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Query: 95 SGIRPFKCT 103
G FK T
Sbjct: 75 PGEENFKLT 83
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain,
phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB:
2lb9_A*
Length = 208
Score = 27.7 bits (62), Expect = 2.9
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 157 LISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQ 202
L+SH P + ++ +Q I + Q +
Sbjct: 166 LVSHHAEPRPYSQEELQVVQLLA---DQVSIAIAQAELSLHHHHHH 208
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 27.7 bits (61), Expect = 3.1
Identities = 4/46 (8%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 157 LISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQ 202
+ H P + P++ + +++Q ++ +
Sbjct: 301 IACHHQTPYVLPPDLRTTLESLG---RLLSLQVQVKEALEHHHHHH 343
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 27.8 bits (62), Expect = 3.4
Identities = 3/73 (4%), Positives = 15/73 (20%), Gaps = 11/73 (15%)
Query: 164 PEDIKPNVDNLQTQISN---NDEQAKIKMQQQQQQQQQQQQ--------QQQQQQQQQQQ 212
++ + +++ K Q+ + +
Sbjct: 65 STTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATL 124
Query: 213 QQQQQQQQQQQQQ 225
+ + Q+
Sbjct: 125 NNAKAEMDVVQEN 137
>2vw9_A Single-stranded DNA binding protein; DNA replication,
single-stranded DNA, single-stranded DNA binding
protein, oligonucleotide/oligosaccharide binding fold,
OB-fold; 2.30A {Helicobacter pylori}
Length = 134
Score = 26.9 bits (60), Expect = 3.6
Identities = 3/33 (9%), Positives = 7/33 (21%)
Query: 189 MQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
+Q ++ Q Q +
Sbjct: 102 LQFMDKKSDNPQANAMQDSIMHENSNNAYPANH 134
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+ + CD C K F + L +H+L+H+
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil,
protein transpor; 2.10A {Salmonella typhimurium}
Length = 150
Score = 26.8 bits (59), Expect = 3.7
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
+ A + + ++ QQ ++Q + Q + +
Sbjct: 22 DDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNTDMGN 62
Score = 25.6 bits (56), Expect = 8.9
Identities = 5/44 (11%), Positives = 19/44 (43%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+ A+ ++ + + ++ QQ ++Q + Q + + +
Sbjct: 15 DLAEKEVDDAARLLGEMRRGCQQAEEQLKMLIDYQNEYRSNLNT 58
>3p01_A Two-component response regulator; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
signali protein; 2.65A {Nostoc SP}
Length = 184
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 190 QQQQQQQQQQQQQQQQQQQQQQQQQ 214
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 191 QQQQQQQQQQQQQQQQQQQQQQQQQ 215
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 192 QQQQQQQQQQQQQQQQQQQQQQQQQ 216
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 193 QQQQQQQQQQQQQQQQQQQQQQQQQ 217
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 194 QQQQQQQQQQQQQQQQQQQQQQQQQ 218
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 195 QQQQQQQQQQQQQQQQQQQQQQQQQ 219
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 196 QQQQQQQQQQQQQQQQQQQQQQQQQ 220
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 197 QQQQQQQQQQQQQQQQQQQQQQQQQ 221
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 198 QQQQQQQQQQQQQQQQQQQQQQQQQ 222
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 199 QQQQQQQQQQQQQQQQQQQQQQQQQ 223
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 200 QQQQQQQQQQQQQQQQQQQQQQQQQ 224
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 27.2 bits (61), Expect = 3.8
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 201 QQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q+ + +Q+ ++ ++ Q
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
Score = 26.8 bits (60), Expect = 5.0
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 202 QQQQQQQQQQQQQQQQQQQQQQQQS 226
Q+ + +Q+ ++ ++ Q S
Sbjct: 6 QRAAETYDLLKQRTEELRRANAQMS 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 27.9 bits (61), Expect = 3.9
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 65 PQMKPRPYKCDTCEKSFTNSQNLNTH-QLIHS 95
P + P Y C+ C F+ L+ H + H
Sbjct: 110 PIVNPSSYVCNVCNARFSTMSALSEHLRSDHR 141
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein,
multidrug resistanc membrane protein; HET: BOG; 1.80A
{Vibrio cholerae}
Length = 442
Score = 27.7 bits (62), Expect = 3.9
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 22/61 (36%)
Query: 188 KMQQQQQQQQQQQQQQQQ----------------------QQQQQQQQQQQQQQQQQQQQ 225
+Q + + +Q QQ +Q ++ Q+ Q +
Sbjct: 365 ALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQSRAFS 424
Query: 226 S 226
Sbjct: 425 L 425
Score = 26.5 bits (59), Expect = 9.0
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 22/64 (34%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQ----------------------QQQQQQQQQQQQQQQQ 222
+ Q + + +Q QQ +Q ++ Q+ Q
Sbjct: 361 TSSQALQARINKTEQAVQQAEQALHIATNRYQGGLATYLDVLVAEESLLNNQRALVNLQS 420
Query: 223 QQQS 226
+ S
Sbjct: 421 RAFS 424
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 27.5 bits (61), Expect = 4.0
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 183 EQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
+ A Q ++ Q Q ++ + +Q Q+ Q+ +
Sbjct: 358 DAALAAAQTNAAARRCQSQLERANLRPCEQHLMQKIQRDEDS 399
Score = 26.8 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 180 NNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 223
N E + M + QQ + Q + Q +QQ+QQ +++ + QQ
Sbjct: 436 NEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQ 479
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 27.5 bits (61), Expect = 4.0
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 182 DEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
+E K +QQ QQ +Q Q+ ++ ++ +Q QQ QQ QQ+
Sbjct: 444 EELLKQALQQAQQLLRQAQELAKKGGGEELLKQALQQAQQLLQQA 488
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis
domain swapping, cyclin-dependent KIN cycle; 3.00A
{Saccharomyces cerevisiae} SCOP: d.97.1.1
Length = 150
Score = 27.0 bits (59), Expect = 4.1
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 168 KPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
+P++ + ++ E QQQQQQQQQQQQQQQQ Q Q Q Q
Sbjct: 94 EPHILLFKRPLNYEAELRAATAAAQQQQQQQQQQQQQQQQHQTQSISNDMQVPPQ 148
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED
storage protein, allergen; 2.40A {Prunus dulcis} PDB:
3ehk_A
Length = 531
Score = 27.6 bits (60), Expect = 4.1
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
L Q N +E+ +Q Q + Q Q + Q + +Q+++ +++QQ
Sbjct: 277 TQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQE 331
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 ANAGVHKCEYCHKVFDQQSSLLSH 62
++ + CEYC+KVF + SL +H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAH 28
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 25.5 bits (56), Expect = 4.7
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 14/68 (20%)
Query: 25 AYKCHQCQRLI---FLSANAGV-----HKCEYCHKVFDQQSSLLSHNCPQMKPRPYKCDT 76
+C C + I +SA C C F + + + C
Sbjct: 15 GTRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNG------KECMCQK 68
Query: 77 CEKSFTNS 84
C + S
Sbjct: 69 CSLPVSVS 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton,
microtubule, tubul domain, hydrolase; HET: GTP; 2.88A
{Saccharomyces cerevisiae}
Length = 278
Score = 27.0 bits (59), Expect = 4.8
Identities = 3/42 (7%), Positives = 18/42 (42%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQS 226
K+K Q + + + + + + ++++ ++++
Sbjct: 227 KKLKPIQVKDLHKLFAKVGDEPSSSKMLFEWEKRELEKKRSQ 268
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.7 bits (53), Expect = 4.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 68 KPRPYKCDTCEKSFTNSQNLNTH 90
+ +PY CD C K + N L+ H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYH 26
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 24.5 bits (53), Expect = 5.0
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 72 YKCDTCEKSFTNSQNLNTHQLIHSGIRPFK 101
+ C C K F S +L+ H +H + +
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGEER 32
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 27.0 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 126 SNLAQHSCMNSHFPKPYQCDRCSQFFGDRM-NLISH 160
SNL + S F + +C RC + FG L +H
Sbjct: 154 SNLPTRGTLTSLFQEDLKCWRCGETFGRHFTKLKAH 189
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 26.7 bits (58), Expect = 5.1
Identities = 5/37 (13%), Positives = 25/37 (67%)
Query: 186 KIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
++ + + ++ + +++ +++ +Q++ Q+ QQ++Q+
Sbjct: 106 RLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQE 142
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 26.6 bits (59), Expect = 5.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 32 QRLIFLSANAGVHKCEYCHKVFDQ 55
+ S N +C YC K ++
Sbjct: 122 GKFKIESKNPLKIRCYYCEKFLNE 145
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural
genomics, MCSG, S genomics, unknown function; 2.82A
{Synechococcus SP}
Length = 150
Score = 26.6 bits (58), Expect = 5.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 173 NLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 224
QT + Q+ + + Q+Q QQQ ++ + ++Q++ QQQ Q
Sbjct: 51 EGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102
Score = 26.2 bits (57), Expect = 5.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 172 DNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
+ + +ISN A ++ Q +Q+ Q Q ++Q + Q+Q QQQ
Sbjct: 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQ 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 27.0 bits (59), Expect = 5.7
Identities = 4/38 (10%), Positives = 17/38 (44%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 222
A++ Q + + + ++++ ++ Q + +Q
Sbjct: 703 AEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQ 740
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.4 bits (53), Expect = 5.8
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 60 LSHNCPQMKPRPYKC--DTCEKSFTNSQNLNTHQLIHSGIR 98
+ +M + ++C C K+F N+ +H H R
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.5 bits (52), Expect = 6.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQLIHS 95
+P+KC CE + + NL H HS
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU;
2.64A {Bacteroides thetaiotaomicron}
Length = 325
Score = 26.6 bits (59), Expect = 6.6
Identities = 4/35 (11%), Positives = 12/35 (34%)
Query: 185 AKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 219
+++Q + ++ + + Q QQ
Sbjct: 282 HVMQLQTTHISELDKKIETLNGRIGGYLSQVATQQ 316
Score = 26.6 bits (59), Expect = 6.8
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 188 KMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 221
MQ Q + ++ + + Q QQ
Sbjct: 283 VMQLQTTHISELDKKIETLNGRIGGYLSQVATQQ 316
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 23.8 bits (51), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 75 DTCEKSFTNSQNLNTHQLIHSG 96
+ C +SF + + LN H+ IH+G
Sbjct: 8 ENCGRSFNDRRKLNRHKKIHTG 29
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 26.5 bits (58), Expect = 8.2
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 189 MQQQQQ-----------QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 225
Q QQ +Q+Q++ Q++ ++ + ++ Q+ ++ Q
Sbjct: 38 PSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQ 85
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 23.7 bits (51), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 70 RPYKCDTCEKSFTNSQNLNTHQL-IHSG 96
+ Y C C ++FT L H IHSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 23.7 bits (51), Expect = 8.9
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 140 KPYQCDRCSQFFGDRMNLISHQ 161
K Y C C++ F R LI H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHA 22
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus
acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Length = 168
Score = 25.9 bits (57), Expect = 9.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 33 RLIFLSANAGVHKCEYCHKVFDQQ 56
L+ +CEYC + D+
Sbjct: 133 TFKTLTEKPLKMRCEYCETIIDEN 156
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor,
bacteriopbhytochrome; HET: MSE BLA; 2.90A
{Rhodopseudomonas palustris tie-1}
Length = 635
Score = 26.3 bits (57), Expect = 9.8
Identities = 8/70 (11%), Positives = 23/70 (32%)
Query: 157 LISHQCGPEDIKPNVDNLQTQISNNDEQAKIKMQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
+ H P I + + ++ ++ Q Q + Q+ +Q+ + ++
Sbjct: 281 VACHHYLPRFIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREG 340
Query: 217 QQQQQQQQQS 226
+ S
Sbjct: 341 DWRAAIFDTS 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.126 0.387
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,877,247
Number of extensions: 149818
Number of successful extensions: 4463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2842
Number of HSP's successfully gapped: 1204
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (26.0 bits)