Query psy14245
Match_columns 181
No_of_seqs 158 out of 1233
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:05:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236|consensus 100.0 1.3E-39 2.8E-44 309.4 8.3 134 43-176 54-200 (665)
2 TIGR00815 sulP high affinity s 100.0 4.3E-33 9.4E-38 259.4 9.9 122 55-176 1-131 (563)
3 PRK11660 putative transporter; 100.0 5.5E-33 1.2E-37 259.1 10.2 118 59-176 20-137 (568)
4 COG0659 SUL1 Sulfate permease 100.0 2.3E-32 5E-37 255.5 9.3 127 50-176 3-132 (554)
5 PF13792 Sulfate_tra_GLY: Sulf 100.0 2E-31 4.3E-36 194.6 7.6 83 54-136 1-84 (84)
6 TIGR03173 pbuX xanthine permea 96.8 0.0059 1.3E-07 55.2 8.0 94 78-174 10-114 (406)
7 TIGR00834 ae anion exchange pr 96.6 0.0068 1.5E-07 60.7 7.9 103 70-172 370-484 (900)
8 TIGR03616 RutG pyrimidine util 95.8 0.094 2E-06 48.3 10.4 106 68-173 29-145 (429)
9 PF00955 HCO3_cotransp: HCO3- 94.7 0.017 3.6E-07 54.7 2.0 100 74-173 38-149 (510)
10 KOG1172|consensus 94.0 0.17 3.7E-06 50.6 7.1 91 83-173 374-476 (876)
11 PRK10720 uracil transporter; P 92.0 0.79 1.7E-05 42.2 8.2 89 79-175 30-124 (428)
12 PF00860 Xan_ur_permease: Perm 91.9 0.83 1.8E-05 41.1 8.0 104 70-175 2-124 (389)
13 COG2252 Xanthine/uracil/vitami 87.9 2.4 5.1E-05 39.7 7.7 107 65-174 16-135 (436)
14 TIGR03173 pbuX xanthine permea 85.7 3.5 7.7E-05 37.3 7.5 94 74-175 223-326 (406)
15 TIGR00801 ncs2 uracil-xanthine 79.3 4.7 0.0001 36.8 5.8 97 71-175 235-342 (415)
16 TIGR00801 ncs2 uracil-xanthine 76.9 30 0.00065 31.6 10.3 96 77-176 19-129 (415)
17 PF06686 SpoIIIAC: Stage III s 76.2 4.3 9.4E-05 27.1 3.5 46 125-170 8-54 (58)
18 PRK11412 putative uracil/xanth 74.1 22 0.00048 33.1 8.7 97 77-175 22-135 (433)
19 COG1296 AzlC Predicted branche 61.9 16 0.00034 31.5 4.8 53 65-122 9-64 (238)
20 TIGR00815 sulP high affinity s 59.6 50 0.0011 31.4 8.1 60 61-120 251-316 (563)
21 PRK11412 putative uracil/xanth 56.7 43 0.00094 31.2 7.1 97 71-175 241-348 (433)
22 COG0573 PstC ABC-type phosphat 53.3 40 0.00086 30.3 6.0 60 57-116 64-152 (310)
23 PHA00736 hypothetical protein 50.3 91 0.002 22.2 6.4 69 85-154 3-72 (79)
24 PRK10692 hypothetical protein; 42.4 89 0.0019 23.3 5.4 47 64-112 4-54 (92)
25 TIGR03616 RutG pyrimidine util 41.0 52 0.0011 30.4 5.0 93 74-174 251-352 (429)
26 PF10762 DUF2583: Protein of u 36.8 1.1E+02 0.0023 22.8 5.1 46 65-112 5-54 (89)
27 PRK10720 uracil transporter; P 34.7 1.1E+02 0.0023 28.3 6.0 93 73-174 228-332 (428)
28 TIGR00843 benE benzoate transp 32.8 45 0.00097 30.9 3.2 106 70-175 22-138 (395)
29 COG2233 UraA Xanthine/uracil p 32.6 1.4E+02 0.0031 28.2 6.4 36 140-175 104-139 (451)
30 COG0628 yhhT Predicted permeas 29.4 2.6E+02 0.0056 24.6 7.3 44 74-117 223-269 (355)
31 PF00916 Sulfate_transp: Sulfa 28.4 75 0.0016 26.6 3.6 59 62-120 140-204 (280)
32 PF11840 DUF3360: Protein of u 26.9 4.5E+02 0.0098 24.9 8.5 43 123-167 125-167 (492)
33 PF04206 MtrE: Tetrahydrometha 26.4 72 0.0016 28.0 3.1 23 92-114 51-73 (269)
34 PRK12287 tqsA pheromone autoin 26.2 2.4E+02 0.0052 24.9 6.6 43 73-115 210-255 (344)
35 TIGR02872 spore_ytvI sporulati 25.1 72 0.0016 27.3 3.0 47 73-119 222-271 (341)
36 PRK11660 putative transporter; 24.6 3.1E+02 0.0067 26.1 7.4 57 64-120 274-336 (568)
37 PF01594 UPF0118: Domain of un 20.6 3.5E+02 0.0077 22.9 6.4 45 73-117 208-255 (327)
38 PF00860 Xan_ur_permease: Perm 20.3 3.7E+02 0.008 24.1 6.7 98 69-174 231-339 (389)
39 PF03594 BenE: Benzoate membra 20.1 97 0.0021 28.7 2.9 43 134-176 80-123 (378)
No 1
>KOG0236|consensus
Probab=100.00 E-value=1.3e-39 Score=309.40 Aligned_cols=134 Identities=42% Similarity=0.726 Sum_probs=125.9
Q ss_pred hhHHHHHHhccccccccCCCCCh-hhHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccc
Q psy14245 43 KTKLTELLHRKVPILAWLPKYNV-NAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLS 121 (181)
Q Consensus 43 ~~~~~~~~~~~~Pil~Wl~~Y~~-~~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~ 121 (181)
+.++.+.+++++|+++|+|+|++ +|+.+|++||+|||++++||+||||.+||+||+|||||+|+|+++|++||+|||++
T Consensus 54 ~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~is 133 (665)
T KOG0236|consen 54 SNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGSLSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVS 133 (665)
T ss_pred HHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeeeeecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCccc
Confidence 34678899999999999999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhhc------------cchHHHHHHHHHHHHHHHHHHHHhccCcccccccCcccc
Q psy14245 122 VGPTSIMALLCLTYTH------------DTSLEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYYGTPM 176 (181)
Q Consensus 122 iGp~a~~sl~~~~~v~------------~~~~~~~~~lt~laGiiqlllgllrlG~l~~~ls~~Vv~ 176 (181)
+||+|++|+|++++++ ...+++++++||++|++|++||+|||||+++|+|++++.
T Consensus 134 iG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt~l~Giiq~~mG~lrLGfl~~~lS~~~l~ 200 (665)
T KOG0236|consen 134 IGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLTFLTGIIQLILGLLRLGFLVRFLSEPALS 200 (665)
T ss_pred ccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHhcChHHHHccHHHHh
Confidence 9999999999996554 246789999999999999999999999999999999863
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=4.3e-33 Score=259.38 Aligned_cols=122 Identities=40% Similarity=0.750 Sum_probs=115.6
Q ss_pred cccccCCCCChhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHH
Q psy14245 55 PILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLT 134 (181)
Q Consensus 55 Pil~Wl~~Y~~~~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~ 134 (181)
|+++|+++|+++|+++|++||++++++++||+||||.+||+||++|||++++|+++|++||+|||+++||++++|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccc---------hHHHHHHHHHHHHHHHHHHHHhccCcccccccCcccc
Q psy14245 135 YTHDT---------SLEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYYGTPM 176 (181)
Q Consensus 135 ~v~~~---------~~~~~~~lt~laGiiqlllgllrlG~l~~~ls~~Vv~ 176 (181)
++++. ..+.+..+++++|++|+++|++|+|++++|+|+||+.
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~ 131 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVIS 131 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHH
Confidence 77541 3457889999999999999999999999999999974
No 3
>PRK11660 putative transporter; Provisional
Probab=99.98 E-value=5.5e-33 Score=259.08 Aligned_cols=118 Identities=29% Similarity=0.579 Sum_probs=114.1
Q ss_pred cCCCCChhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhcc
Q psy14245 59 WLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHD 138 (181)
Q Consensus 59 Wl~~Y~~~~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~ 138 (181)
|+++|+++|+++|++||+|+|++++||+||||.+||+||++||||+++|+++|++||+|||+++||++.+++++++.+++
T Consensus 20 wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~~~ 99 (568)
T PRK11660 20 WKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQ 99 (568)
T ss_pred HHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhccCcccccccCcccc
Q psy14245 139 TSLEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYYGTPM 176 (181)
Q Consensus 139 ~~~~~~~~lt~laGiiqlllgllrlG~l~~~ls~~Vv~ 176 (181)
.+.+.+..+++++|++|+++|++|+|++++|+|+||+.
T Consensus 100 ~~~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~ 137 (568)
T PRK11660 100 FGLAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTL 137 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHH
Confidence 77788888999999999999999999999999999974
No 4
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-32 Score=255.46 Aligned_cols=127 Identities=35% Similarity=0.628 Sum_probs=123.8
Q ss_pred HhccccccccCCCCChhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccccchhHHHH
Q psy14245 50 LHRKVPILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMA 129 (181)
Q Consensus 50 ~~~~~Pil~Wl~~Y~~~~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~s 129 (181)
+++++|..+|.+.|+++|+++|++||+|||++++||+||||.+||+||++|||++++++++|++||+||++++||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHhccCcccccccCcccc
Q psy14245 130 LLCLTYTH---DTSLEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYYGTPM 176 (181)
Q Consensus 130 l~~~~~v~---~~~~~~~~~lt~laGiiqlllgllrlG~l~~~ls~~Vv~ 176 (181)
+++++.+. +++.++++++++++|++|+++|++|||++++|+|+||+.
T Consensus 83 ~v~a~~i~~~~~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~ 132 (554)
T COG0659 83 VVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLI 132 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHH
Confidence 99999998 899999999999999999999999999999999999974
No 5
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.97 E-value=2e-31 Score=194.58 Aligned_cols=83 Identities=46% Similarity=0.881 Sum_probs=80.4
Q ss_pred ccccccCCCCC-hhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHH
Q psy14245 54 VPILAWLPKYN-VNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLC 132 (181)
Q Consensus 54 ~Pil~Wl~~Y~-~~~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~ 132 (181)
+|+++|+++|+ |+|+++|++||+|+|++++||+||||.+||+||++|||++++++++|++||+|||+++||++++|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 69999999999 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q psy14245 133 LTYT 136 (181)
Q Consensus 133 ~~~v 136 (181)
++.+
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 6
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=96.77 E-value=0.0059 Score=55.17 Aligned_cols=94 Identities=13% Similarity=0.115 Sum_probs=74.1
Q ss_pred HHHHHhhHHHHHHHHhCCCh-------hhHHHHHHhhhHHhh----hcCCCcccccchhHHHHHHHHHhhccchHHHHHH
Q psy14245 78 VGLTLIPQAIAYASLAGLNP-------KYGLYSSIFGGVMYI----FLGTTKQLSVGPTSIMALLCLTYTHDTSLEMVAF 146 (181)
Q Consensus 78 val~~IPq~lAyA~lAglpp-------~~GLysa~~~~liya----lfGsS~~~~iGp~a~~sl~~~~~v~~~~~~~~~~ 146 (181)
.+.+.+|.-++-+ .|+++ +.-+.++.+..++.+ .+|+..-+..||..+....+.....+++.+.+..
T Consensus 10 ~~~i~~p~i~~~a--~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~g 87 (406)
T TIGR03173 10 AGAVAVPLIVGGA--LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFG 87 (406)
T ss_pred HHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHH
Confidence 3556677666543 58888 678888888888886 6789999999998865554444444578899999
Q ss_pred HHHHHHHHHHHHHHhccCcccccccCcc
Q psy14245 147 LTFLTGLVQLTCGLLSLGKCKSYLYYGT 174 (181)
Q Consensus 147 lt~laGiiqlllgllrlG~l~~~ls~~V 174 (181)
..+++|++++++| .+++++.+++|..|
T Consensus 88 a~~v~Gii~illg-~~~~~l~~~iPp~v 114 (406)
T TIGR03173 88 AVIVAGLFVILLA-PFFSKLVRFFPPVV 114 (406)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCcHH
Confidence 9999999999999 59999999999644
No 7
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=96.62 E-value=0.0068 Score=60.70 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhC------CChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHh---hccch
Q psy14245 70 SDVLAGITVGLTLIPQAIAYASLAG------LNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTY---THDTS 140 (181)
Q Consensus 70 ~Dl~AGltval~~IPq~lAyA~lAg------lpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~---v~~~~ 140 (181)
+-+-|-+-+-..++.-++||+.+-+ +...=-|.|+.+++++|++||+.|-.++|+|+.+.+....+ ..+.+
T Consensus 370 q~laa~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~~~ 449 (900)
T TIGR00834 370 QCLAAVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCESNG 449 (900)
T ss_pred hhHHHHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhhcC
Confidence 3444566667778888899997655 46777899999999999999999999999999888876643 33333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhccCcccccccC
Q psy14245 141 ---LEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYY 172 (181)
Q Consensus 141 ---~~~~~~lt~laGiiqlllgllrlG~l~~~ls~ 172 (181)
....+.+.+-+++++++++.+...++++|+.+
T Consensus 450 ~~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTR 484 (900)
T TIGR00834 450 LEYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISR 484 (900)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34577889999999999999999999999875
No 8
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=95.81 E-value=0.094 Score=48.29 Aligned_cols=106 Identities=14% Similarity=0.248 Sum_probs=74.5
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhh-hcCCCcccccchhHHHHHHHHHhh--c----cch
Q psy14245 68 AVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYI-FLGTTKQLSVGPTSIMALLCLTYT--H----DTS 140 (181)
Q Consensus 68 l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liya-lfGsS~~~~iGp~a~~sl~~~~~v--~----~~~ 140 (181)
+...++.|+.--+.+.--.++...+-|+++...+.++.++.++.. .+|+.--...|+.......+-... . +.+
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~~~~~~~~~~~~~ 108 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIAATGYNGQGTNPN 108 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHHHHhhcccCCcch
Confidence 456788888766655544455555558999999999999999997 577777777788765443322211 1 125
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC----cccccccCc
Q psy14245 141 LEMVAFLTFLTGLVQLTCGLLSLG----KCKSYLYYG 173 (181)
Q Consensus 141 ~~~~~~lt~laGiiqlllgllrlG----~l~~~ls~~ 173 (181)
.+.+...++++|++++++|+++++ ++.+++|..
T Consensus 109 ~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPv 145 (429)
T TIGR03616 109 IALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPV 145 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcH
Confidence 678889999999999999999875 454555543
No 9
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=94.74 E-value=0.017 Score=54.70 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHHHHHHHHhC------CChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHh---hccchHHH-
Q psy14245 74 AGITVGLTLIPQAIAYASLAG------LNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTY---THDTSLEM- 143 (181)
Q Consensus 74 AGltval~~IPq~lAyA~lAg------lpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~---v~~~~~~~- 143 (181)
|-+-+-..++.-+++|+.+-+ +...--|.++.+++++|++||+.|-.++|+|+-+.+..... -++.+.++
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~~~~~~fl 117 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCKSYGLDFL 117 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445556667778888886654 45667788999999999999999999999999888876533 33445543
Q ss_pred --HHHHHHHHHHHHHHHHHhccCcccccccCc
Q psy14245 144 --VAFLTFLTGLVQLTCGLLSLGKCKSYLYYG 173 (181)
Q Consensus 144 --~~~lt~laGiiqlllgllrlG~l~~~ls~~ 173 (181)
-..+.+.+++++++++.+...++++|+.+-
T Consensus 118 ~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRf 149 (510)
T PF00955_consen 118 PFRAWIGIWTAIFLLVLAAFNASFLVRYITRF 149 (510)
T ss_dssp --------------------------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 568889999999999999999999998764
No 10
>KOG1172|consensus
Probab=93.96 E-value=0.17 Score=50.61 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=72.2
Q ss_pred hhHHHHHHHHhC------CChhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHH---hhccch---HHHHHHHHHH
Q psy14245 83 IPQAIAYASLAG------LNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLT---YTHDTS---LEMVAFLTFL 150 (181)
Q Consensus 83 IPq~lAyA~lAg------lpp~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~---~v~~~~---~~~~~~lt~l 150 (181)
+--+++|+.+-| +...=-|.|..+++++|++||+-+..++|+++-+.++-.. +..+.+ .+..+.+.+.
T Consensus 374 l~P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~~~~~dyl~~r~wVglW 453 (876)
T KOG1172|consen 374 LLPAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCKDNGLDYLAFRAWVGLW 453 (876)
T ss_pred hhhHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHhhCCCchhhHHHHHHHH
Confidence 334677776544 4466678999999999999999999999999988887654 333343 3557788999
Q ss_pred HHHHHHHHHHhccCcccccccCc
Q psy14245 151 TGLVQLTCGLLSLGKCKSYLYYG 173 (181)
Q Consensus 151 aGiiqlllgllrlG~l~~~ls~~ 173 (181)
+.++++++..+....+++|+.+.
T Consensus 454 ~~~l~illaa~~as~lv~~~TRf 476 (876)
T KOG1172|consen 454 TAFLLILLAATNASSLVKYITRF 476 (876)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHh
Confidence 99999999999999999998653
No 11
>PRK10720 uracil transporter; Provisional
Probab=92.04 E-value=0.79 Score=42.20 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred HHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcc-cccchhH-HHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q psy14245 79 GLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQ-LSVGPTS-IMALLCLTYTHDTSLEMVAFLTFLTGLVQL 156 (181)
Q Consensus 79 al~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~-~~iGp~a-~~sl~~~~~v~~~~~~~~~~lt~laGiiql 156 (181)
+.+.+|.-+ |+++...+..+-+..++..+++++|. +.-||.- .++.++... .++.+.+....+++|++++
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~~~~~~lgav~v~Glv~i 101 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PLGYEVALGGFIMCGVLFC 101 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--HccHHHHHHHHHHHHHHHH
Confidence 556666633 88888899999999999998887665 4446643 333333222 2478889999999999999
Q ss_pred HHHHh--cc--CcccccccCccc
Q psy14245 157 TCGLL--SL--GKCKSYLYYGTP 175 (181)
Q Consensus 157 llgll--rl--G~l~~~ls~~Vv 175 (181)
+++++ |+ +++.+++|..|+
T Consensus 102 lls~~~~~~g~~~l~~~fPp~v~ 124 (428)
T PRK10720 102 LVALIVKKAGTGWLDVLFPPAAM 124 (428)
T ss_pred HHHHHHHhhHHHHHHHhCChHHH
Confidence 99997 44 468899998653
No 12
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=91.89 E-value=0.83 Score=41.14 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHH------hhHHHHHHHHhCC------ChhhHHHHHHhhhHHhhh-cCCCcccccchhHHHHHHHHHhh
Q psy14245 70 SDVLAGITVGLTL------IPQAIAYASLAGL------NPKYGLYSSIFGGVMYIF-LGTTKQLSVGPTSIMALLCLTYT 136 (181)
Q Consensus 70 ~Dl~AGltval~~------IPq~lAyA~lAgl------pp~~GLysa~~~~liyal-fGsS~~~~iGp~a~~sl~~~~~v 136 (181)
+.+++|+.--+.. +|.-++.+ .|+ -....+.++.+..++.++ +|..--+.-|+....-.......
T Consensus 2 ~~i~~glQ~~l~m~~~~iv~P~il~~~--~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 2 KEILLGLQHFLAMFYIIIVVPLILAAA--FGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHhhc--ccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 4566776655444 44444444 121 146677788888899999 77777777787654222111121
Q ss_pred c-----cchHHHHHHHHHHHHHHHHHHHHhcc-CcccccccCccc
Q psy14245 137 H-----DTSLEMVAFLTFLTGLVQLTCGLLSL-GKCKSYLYYGTP 175 (181)
Q Consensus 137 ~-----~~~~~~~~~lt~laGiiqlllgllrl-G~l~~~ls~~Vv 175 (181)
. +.+.+.+....+++|++++++++.++ +++.+++|..|.
T Consensus 80 g~~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~ 124 (389)
T PF00860_consen 80 GMAESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVK 124 (389)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHH
T ss_pred ccccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhhe
Confidence 2 34667788999999999999999999 599999997653
No 13
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=87.86 E-value=2.4 Score=39.74 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=68.5
Q ss_pred hhhHhHHHHHHHHHHHHHh------hHHHHHHHHhCCChhhHHH----HHHhhhHHhhhcCCCcccccchhHHHHHHHHH
Q psy14245 65 VNAAVSDVLAGITVGLTLI------PQAIAYASLAGLNPKYGLY----SSIFGGVMYIFLGTTKQLSVGPTSIMALLCLT 134 (181)
Q Consensus 65 ~~~l~~Dl~AGltval~~I------Pq~lAyA~lAglpp~~GLy----sa~~~~liyalfGsS~~~~iGp~a~~sl~~~~ 134 (181)
..+.+.+++||+|.-+.+. |+-++ -||.|...-.+ ++.++.+.-+++.-.|.-..=.-+.-+....+
T Consensus 16 ~t~vrtEiiAGlTTFltM~YIl~VnP~IL~---~ag~~~~av~~AT~l~a~~gs~~mgl~An~P~alapgmglnAfFaft 92 (436)
T COG2252 16 GTTVRTEVIAGLTTFLTMAYIVFVNPQILG---AAGMPVGAVFVATCLAAAIGSIAMGLYANLPIALAPGMGLNAFFAFT 92 (436)
T ss_pred CchHHHHHHHHHHHHHHHHHhheecHHHHH---hcCCCchhHHHHHHHHHHHHHHHHHHHHcCchhhcchhhHHHHHHHH
Confidence 5688999999999987654 44443 35566333333 23344455555554443322222223333334
Q ss_pred hhccc--hHHHHHHHHHHHHHHHHHHHHhcc-CcccccccCcc
Q psy14245 135 YTHDT--SLEMVAFLTFLTGLVQLTCGLLSL-GKCKSYLYYGT 174 (181)
Q Consensus 135 ~v~~~--~~~~~~~lt~laGiiqlllgllrl-G~l~~~ls~~V 174 (181)
++... .++.+....|++|++.+++.+.++ .++.+.+|++.
T Consensus 93 vv~~~gi~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~l 135 (436)
T COG2252 93 VVLGMGLSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSL 135 (436)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHH
Confidence 44433 578999999999999999999998 67888888765
No 14
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=85.73 E-value=3.5 Score=37.26 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhHHHH----HHHHhCCCh-----hhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccchHHHH
Q psy14245 74 AGITVGLTLIPQAIA----YASLAGLNP-----KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSLEMV 144 (181)
Q Consensus 74 AGltval~~IPq~lA----yA~lAglpp-----~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~~~~~ 144 (181)
.-++++++.+-++++ .+...|-++ ..++.+--+..++-++||+.+..+...........+. .-+
T Consensus 223 ~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~~~~~~~~~~tg~-----~sr-- 295 (406)
T TIGR03173 223 TMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSFSQNVGLVQLTGV-----KSR-- 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcchhhhHHHHHHhCC-----Cch--
Confidence 334566666666554 444566432 3689999999999999999886654433322222221 112
Q ss_pred HHHHHHHHHHHHHHHHh-ccCcccccccCccc
Q psy14245 145 AFLTFLTGLVQLTCGLL-SLGKCKSYLYYGTP 175 (181)
Q Consensus 145 ~~lt~laGiiqlllgll-rlG~l~~~ls~~Vv 175 (181)
.....+|++.++++++ +++.+..++|.+|+
T Consensus 296 -~~~~~~~~~lil~~l~~~~~~l~~~iP~~vl 326 (406)
T TIGR03173 296 -YVVAAAGVILVLLGLFPKLAALVASIPQPVL 326 (406)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2235678888888887 78999999998875
No 15
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=79.34 E-value=4.7 Score=36.82 Aligned_cols=97 Identities=10% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhHHH----HHHHHhCCCh------hhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccch
Q psy14245 71 DVLAGITVGLTLIPQAI----AYASLAGLNP------KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTS 140 (181)
Q Consensus 71 Dl~AGltval~~IPq~l----AyA~lAglpp------~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~ 140 (181)
.+..=+.++++.+=|++ +.+..+|-.+ ..++.+--++.++-++||+.+....+....+...++. .
T Consensus 235 ~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~~~~T~~-----~ 309 (415)
T TIGR00801 235 AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGVIALTRV-----A 309 (415)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhheeeeecCC-----C
Confidence 44444556666666665 5556777632 4799999999999999999887776543322222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCcccccccCccc
Q psy14245 141 LEMVAFLTFLTGLVQLTCGLL-SLGKCKSYLYYGTP 175 (181)
Q Consensus 141 ~~~~~~lt~laGiiqlllgll-rlG~l~~~ls~~Vv 175 (181)
-+ .....+|++.+++|++ +++.+...+|.+|.
T Consensus 310 sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vl 342 (415)
T TIGR00801 310 SR---WVIVGAAVILIALGFFPKIAALITSIPSPVL 342 (415)
T ss_pred ch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11 2445677777777777 78888888888774
No 16
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=76.89 E-value=30 Score=31.59 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=67.2
Q ss_pred HHHHHHhhHHHHHHHHhCCCh-------hhHHHHHHhhhHHhhhcCCCc---ccccchh-HHHHHHHHHhhccchHHHHH
Q psy14245 77 TVGLTLIPQAIAYASLAGLNP-------KYGLYSSIFGGVMYIFLGTTK---QLSVGPT-SIMALLCLTYTHDTSLEMVA 145 (181)
Q Consensus 77 tval~~IPq~lAyA~lAglpp-------~~GLysa~~~~liyalfGsS~---~~~iGp~-a~~sl~~~~~v~~~~~~~~~ 145 (181)
-.+.+.+|.-++-+. +++ +..+..+.+..++.++++..+ -...|+. +.++.++... ..++.+.+.
T Consensus 19 ~~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~-~~~~~~~~~ 94 (415)
T TIGR00801 19 FGGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIG-SGLGIPAIM 94 (415)
T ss_pred HHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHH-hccCHHHHH
Confidence 345667777666554 332 556777788888888877766 4556776 5555544322 335788899
Q ss_pred HHHHHHHHHHHHHHHh--cc--CcccccccCcccc
Q psy14245 146 FLTFLTGLVQLTCGLL--SL--GKCKSYLYYGTPM 176 (181)
Q Consensus 146 ~lt~laGiiqlllgll--rl--G~l~~~ls~~Vv~ 176 (181)
...+.+|++++++++. |+ +++.+++|..|.-
T Consensus 95 g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g 129 (415)
T TIGR00801 95 GALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTG 129 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHH
Confidence 9999999999999985 54 4678999987753
No 17
>PF06686 SpoIIIAC: Stage III sporulation protein AC/AD protein family
Probab=76.20 E-value=4.3 Score=27.08 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHHHhccCcccccc
Q psy14245 125 TSIMALLCLTYTHDTS-LEMVAFLTFLTGLVQLTCGLLSLGKCKSYL 170 (181)
Q Consensus 125 ~a~~sl~~~~~v~~~~-~~~~~~lt~laGiiqlllgllrlG~l~~~l 170 (181)
.+.++.+++....+.+ .+++..+++.+|++.+.+.+=+++.+.+.+
T Consensus 8 igii~~~l~~vlk~~~~~e~a~~isla~~i~I~~~~~~~i~~l~~~i 54 (58)
T PF06686_consen 8 IGIIAAFLALVLKQAGEPEYASLISLAGGILIFLLVLPKISSLFETI 54 (58)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777 999999999999999999998888777654
No 18
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=74.09 E-value=22 Score=33.09 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHHHhhHHHHHHHHhCCCh-------hhHHHHHHhhhHHhhhcCCCcccccchhHHH-HHHHHHhh--ccch--HHHH
Q psy14245 77 TVGLTLIPQAIAYASLAGLNP-------KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIM-ALLCLTYT--HDTS--LEMV 144 (181)
Q Consensus 77 tval~~IPq~lAyA~lAglpp-------~~GLysa~~~~liyalfGsS~~~~iGp~a~~-sl~~~~~v--~~~~--~~~~ 144 (181)
..+.+.+|.-++=| .|+++ ++.+..+-+..++=+.||+.--+.-||+.+. ..+..-.. ...+ ....
T Consensus 22 ~~~~i~vPliva~a--~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~~~~g~~~~~~ 99 (433)
T PRK11412 22 FCNTVVVPPTLLSA--FQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcccccCccHHHH
Confidence 45677788776644 67776 3466667777788888998888888987664 22222111 1122 2111
Q ss_pred ----HHHHHHHHHHHHHHHHhc-cCcccccccCccc
Q psy14245 145 ----AFLTFLTGLVQLTCGLLS-LGKCKSYLYYGTP 175 (181)
Q Consensus 145 ----~~lt~laGiiqlllgllr-lG~l~~~ls~~Vv 175 (181)
....+++|++++++|..+ ++++.+++|.-|+
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~ 135 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVM 135 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Confidence 235688999999999998 8999999987654
No 19
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=61.88 E-value=16 Score=31.54 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=40.2
Q ss_pred hhhHhHHHHHHHHHHHHHhhHHHHHHHHh---CCChhhHHHHHHhhhHHhhhcCCCccccc
Q psy14245 65 VNAAVSDVLAGITVGLTLIPQAIAYASLA---GLNPKYGLYSSIFGGVMYIFLGTTKQLSV 122 (181)
Q Consensus 65 ~~~l~~Dl~AGltval~~IPq~lAyA~lA---glpp~~GLysa~~~~liyalfGsS~~~~i 122 (181)
++.+++.+.+++.+.+=.+|-|++|+.++ |+++ +++.++..++|+ |+|..+.+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~---~e~~lmS~~iyA--GasQfv~i 64 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSP---LEAILMSLLIYA--GASQFVAI 64 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHc--cHHHHHHH
Confidence 57789999999999999999999999886 5555 445555566665 55555554
No 20
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=59.55 E-value=50 Score=31.35 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhhHHHHHHHH-h-----CCChhhHHHHHHhhhHHhhhcCCCccc
Q psy14245 61 PKYNVNAAVSDVLAGITVGLTLIPQAIAYASL-A-----GLNPKYGLYSSIFGGVMYIFLGTTKQL 120 (181)
Q Consensus 61 ~~Y~~~~l~~Dl~AGltval~~IPq~lAyA~l-A-----glpp~~GLysa~~~~liyalfGsS~~~ 120 (181)
+.++++.+..=+..+++++++..=+.++.|.. + ..++-.=|.+.-+..++-++||+-+-.
T Consensus 251 ~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~ 316 (563)
T TIGR00815 251 ITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPAT 316 (563)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCC
Confidence 34566677766778889999999999887743 2 256778899999999999999988764
No 21
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=56.73 E-value=43 Score=31.15 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhHH----HHHHHHhCCCh------hhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccch
Q psy14245 71 DVLAGITVGLTLIPQA----IAYASLAGLNP------KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTS 140 (181)
Q Consensus 71 Dl~AGltval~~IPq~----lAyA~lAglpp------~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~ 140 (181)
.++.-+.++++.+-|. .|.+.+.+-++ ..|+.+--+..++.++||+.+..+.+-..-+..+++-.
T Consensus 241 ~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~----- 315 (433)
T PRK11412 241 IILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDY----- 315 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCc-----
Confidence 3455555555554443 44555655432 45999999999999999999987775544433333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCcccccccCccc
Q psy14245 141 LEMVAFLTFLTGLVQLTCGLL-SLGKCKSYLYYGTP 175 (181)
Q Consensus 141 ~~~~~~lt~laGiiqlllgll-rlG~l~~~ls~~Vv 175 (181)
.=.+...+|++++++|++ +++.+..-+|.||+
T Consensus 316 ---SR~v~~~aa~ilillgl~PK~~alia~IP~pVl 348 (433)
T PRK11412 316 ---RRRSFIYGSVMCLLVALIPALTRLFCSIPLPVS 348 (433)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 112334466666666665 56666677777663
No 22
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=53.31 E-value=40 Score=30.34 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=45.0
Q ss_pred cccCC-----CCC-hhhHhHHHHHHHHHHHHHhhHHHHHHH---------------------HhCCC-hhhHHHHHHh-h
Q psy14245 57 LAWLP-----KYN-VNAAVSDVLAGITVGLTLIPQAIAYAS---------------------LAGLN-PKYGLYSSIF-G 107 (181)
Q Consensus 57 l~Wl~-----~Y~-~~~l~~Dl~AGltval~~IPq~lAyA~---------------------lAglp-p~~GLysa~~-~ 107 (181)
.+|-| +|. +.-+.+-++..+.-.++++|.|++.|. +||+| .+||+++.++ .
T Consensus 64 ~~W~p~~~~~~~G~l~~i~GTli~s~iA~liAvP~gi~~Aifl~E~~~p~~~r~~l~~~iElLAgIPSVVYG~fgl~vl~ 143 (310)
T COG0573 64 TEWNPTNAQPQYGALPPIAGTLITSLIALLIAVPVGIGTAIFLSEYAPPRRLRRVLKPAIELLAGIPSVVYGFFGLFVLA 143 (310)
T ss_pred CccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 36877 466 677888888889999999999999995 67777 6678887653 4
Q ss_pred hHHhhhcCC
Q psy14245 108 GVMYIFLGT 116 (181)
Q Consensus 108 ~liyalfGs 116 (181)
+++...|+.
T Consensus 144 P~l~~~~~~ 152 (310)
T COG0573 144 PFLRDVFGP 152 (310)
T ss_pred HHHHHHhcc
Confidence 555555553
No 23
>PHA00736 hypothetical protein
Probab=50.27 E-value=91 Score=22.22 Aligned_cols=69 Identities=23% Similarity=0.394 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCChhhHHHH-HHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q psy14245 85 QAIAYASLAGLNPKYGLYS-SIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSLEMVAFLTFLTGLV 154 (181)
Q Consensus 85 q~lAyA~lAglpp~~GLys-a~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~~~~~~~lt~laGii 154 (181)
.+++.|+-.|+.|+.+..- -.+.++.|-.-|.-+.+.+|-.+..++|.-.... --+..+....+++|++
T Consensus 3 daislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp-lfwgi~vifgliag~v 72 (79)
T PHA00736 3 DAISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP-LFWGITVIFGLIAGLV 72 (79)
T ss_pred hHHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 4677888899999887654 3456789999999999999999999888765542 1123344444555543
No 24
>PRK10692 hypothetical protein; Provisional
Probab=42.39 E-value=89 Score=23.32 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=31.2
Q ss_pred ChhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCC----hhhHHHHHHhhhHHhh
Q psy14245 64 NVNAAVSDVLAGITVGLTLIPQAIAYASLAGLN----PKYGLYSSIFGGVMYI 112 (181)
Q Consensus 64 ~~~~l~~Dl~AGltval~~IPq~lAyA~lAglp----p~~GLysa~~~~liya 112 (181)
+...+.++++-|+ |++.+=-+++|.+++.+| |++=-+.++++.++-|
T Consensus 4 k~a~~~GN~lMgl--Gmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGA 54 (92)
T PRK10692 4 KNASLLGNVLMGL--GLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGA 54 (92)
T ss_pred hhhHHHhhHHHHH--HHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHH
Confidence 3456778888776 444555699999999887 6665555555554444
No 25
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=41.04 E-value=52 Score=30.37 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhHHH----HHHHHhC--CCh--hhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccchHHHHH
Q psy14245 74 AGITVGLTLIPQAI----AYASLAG--LNP--KYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSLEMVA 145 (181)
Q Consensus 74 AGltval~~IPq~l----AyA~lAg--lpp--~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~~~~~~ 145 (181)
.=+.++++..=|++ |.+..+| .++ ..|+.+--+..++.++||+++..+.+-......++ +. ..-
T Consensus 251 ~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~i~~T-------~v-~SR 322 (429)
T TIGR03616 251 LIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGVMAVT-------KV-YST 322 (429)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeeeeeec-------Cc-chH
Confidence 33444555555554 4444555 334 47999999999999999999876664322211111 10 000
Q ss_pred HHHHHHHHHHHHHHHhc-cCcccccccCcc
Q psy14245 146 FLTFLTGLVQLTCGLLS-LGKCKSYLYYGT 174 (181)
Q Consensus 146 ~lt~laGiiqlllgllr-lG~l~~~ls~~V 174 (181)
.+...+|++++++|++. ++.+...+|.||
T Consensus 323 ~v~~~a~~~lillgl~Pk~~al~~~IP~pV 352 (429)
T TIGR03616 323 LVFVAAAVFAILLGFSPKFGALIHTIPVAV 352 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22233555555555553 666666666665
No 26
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=36.82 E-value=1.1e+02 Score=22.78 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=30.1
Q ss_pred hhhHhHHHHHHHHHHHHHhhHHHHHHHHhCCC----hhhHHHHHHhhhHHhh
Q psy14245 65 VNAAVSDVLAGITVGLTLIPQAIAYASLAGLN----PKYGLYSSIFGGVMYI 112 (181)
Q Consensus 65 ~~~l~~Dl~AGltval~~IPq~lAyA~lAglp----p~~GLysa~~~~liya 112 (181)
...+.++++-|+ |++..=-+++|++++.+| |++=-+.++++.++-|
T Consensus 5 ~a~~~GN~lMgl--Gmv~Mv~gigysi~~~~~~L~Lp~~~~~gal~~IFiGA 54 (89)
T PF10762_consen 5 NAFLLGNVLMGL--GMVVMVGGIGYSILSQIPQLGLPQFLAHGALFSIFIGA 54 (89)
T ss_pred hhHHHhhHHHHH--hHHHHHHhHHHHHHHhcccCCCcHHHHhhHHHHHHHHH
Confidence 345677777776 455555799999999887 5655555555444443
No 27
>PRK10720 uracil transporter; Provisional
Probab=34.70 E-value=1.1e+02 Score=28.29 Aligned_cols=93 Identities=10% Similarity=0.155 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhHHHHHHH----HhCCC------hhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccchHH
Q psy14245 73 LAGITVGLTLIPQAIAYAS----LAGLN------PKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSLE 142 (181)
Q Consensus 73 ~AGltval~~IPq~lAyA~----lAglp------p~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~~~ 142 (181)
+.=+..+++.+.++++-.. ..+-+ ...++.+--+..++.++||+++..+.+-......++ +
T Consensus 228 l~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T-------~-- 298 (428)
T PRK10720 228 LTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAIT-------R-- 298 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeec-------c--
Confidence 3445555566677766332 23322 356999999999999999999876643222111111 1
Q ss_pred HHH-HHHHHHHHHHHHHHHh-ccCcccccccCcc
Q psy14245 143 MVA-FLTFLTGLVQLTCGLL-SLGKCKSYLYYGT 174 (181)
Q Consensus 143 ~~~-~lt~laGiiqlllgll-rlG~l~~~ls~~V 174 (181)
++. .+...+|++.+++|++ +++.+...+|.||
T Consensus 299 v~sr~v~~~a~~~li~lg~~pk~~a~ia~iP~pV 332 (428)
T PRK10720 299 VYSTWVIGGAAIIAILLSCVGKLAAAIQAIPLPV 332 (428)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 111 1122355555555553 4566666666665
No 28
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=32.84 E-value=45 Score=30.90 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHh--hHH--HHHHHHhCCChhh---HHHHHHhhhHHhhhcCC---CcccccchhHHHHHHHHHhhccc
Q psy14245 70 SDVLAGITVGLTLI--PQA--IAYASLAGLNPKY---GLYSSIFGGVMYIFLGT---TKQLSVGPTSIMALLCLTYTHDT 139 (181)
Q Consensus 70 ~Dl~AGltval~~I--Pq~--lAyA~lAglpp~~---GLysa~~~~liyalfGs---S~~~~iGp~a~~sl~~~~~v~~~ 139 (181)
+-+.||+...++.. |-. +.-+..+|+++.. .+.+..+..=+..++=+ .--++.+...--+.++....+..
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~~ 101 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPGI 101 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCCC
Confidence 34557777666543 222 2233456666433 34443333322222212 23355566655666665555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc-cCcccccccCccc
Q psy14245 140 SLEMVAFLTFLTGLVQLTCGLLS-LGKCKSYLYYGTP 175 (181)
Q Consensus 140 ~~~~~~~lt~laGiiqlllgllr-lG~l~~~ls~~Vv 175 (181)
+..-+.-..+++|++.+++|+.+ ++++.+++|.++.
T Consensus 102 ~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va 138 (395)
T TIGR00843 102 SLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIA 138 (395)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 66777777888999999998887 5899999999875
No 29
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=32.62 E-value=1.4e+02 Score=28.23 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcccccccCccc
Q psy14245 140 SLEMVAFLTFLTGLVQLTCGLLSLGKCKSYLYYGTP 175 (181)
Q Consensus 140 ~~~~~~~lt~laGiiqlllgllrlG~l~~~ls~~Vv 175 (181)
+...+.-..+.+|++.++++.+--.++.+++|.-|+
T Consensus 104 ~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVt 139 (451)
T COG2233 104 GIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVT 139 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 366666777778888877776544499999987664
No 30
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=29.36 E-value=2.6e+02 Score=24.59 Aligned_cols=44 Identities=27% Similarity=0.355 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhHHHHHHHHhCC---ChhhHHHHHHhhhHHhhhcCCC
Q psy14245 74 AGITVGLTLIPQAIAYASLAGL---NPKYGLYSSIFGGVMYIFLGTT 117 (181)
Q Consensus 74 AGltval~~IPq~lAyA~lAgl---pp~~GLysa~~~~liyalfGsS 117 (181)
+++...++.+|.++..|.++|+ =|..|=..+++|..+++++-+.
T Consensus 223 ~~igl~ilgvp~alllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~ 269 (355)
T COG0628 223 TGIGLLILGVPYALLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGG 269 (355)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhcc
Confidence 4444556688999999988774 5889999999999999998765
No 31
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=28.36 E-value=75 Score=26.61 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=43.7
Q ss_pred CCChhhHhHHHHHHHHHHHHHhhHHHHHHHHh----C--CChhhHHHHHHhhhHHhhhcCCCccc
Q psy14245 62 KYNVNAAVSDVLAGITVGLTLIPQAIAYASLA----G--LNPKYGLYSSIFGGVMYIFLGTTKQL 120 (181)
Q Consensus 62 ~Y~~~~l~~Dl~AGltval~~IPq~lAyA~lA----g--lpp~~GLysa~~~~liyalfGsS~~~ 120 (181)
..+++.+..-+..+++++++..=+.+..+... | +++-.=|.+--+..++-++||+-+..
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~ 204 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGS 204 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccc
Confidence 55566666666688899999999998877432 2 56777888888888888888876543
No 32
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=26.89 E-value=4.5e+02 Score=24.94 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhccCccc
Q psy14245 123 GPTSIMALLCLTYTHDTSLEMVAFLTFLTGLVQLTCGLLSLGKCK 167 (181)
Q Consensus 123 Gp~a~~sl~~~~~v~~~~~~~~~~lt~laGiiqlllgllrlG~l~ 167 (181)
|+-+-+-.++..++...+-. .++.++.|++-+++++.+-|...
T Consensus 125 GthgPmIpLIp~ivaaGgHP--Lalgilvg~fGlil~~~kggS~L 167 (492)
T PF11840_consen 125 GTHGPMIPLIPLIVAAGGHP--LALGILVGVFGLILSIFKGGSKL 167 (492)
T ss_pred CCCCCcchhhHHHHHcCCCc--HHHHHHHHHHHHHHHHhcchhHH
Confidence 44444455555554432222 35678899999999999988643
No 33
>PF04206 MtrE: Tetrahydromethanopterin S-methyltransferase, subunit E ; InterPro: IPR005780 This model describes N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit E in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0006814 sodium ion transport, 0005737 cytoplasm, 0012506 vesicle membrane
Probab=26.39 E-value=72 Score=28.05 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=16.5
Q ss_pred HhCCChhhHHHHHHhhhHHhhhc
Q psy14245 92 LAGLNPKYGLYSSIFGGVMYIFL 114 (181)
Q Consensus 92 lAglpp~~GLysa~~~~liyalf 114 (181)
++|=||.||||.++-+.+.|++.
T Consensus 51 iSGEP~aygl~~ai~g~iA~~lm 73 (269)
T PF04206_consen 51 ISGEPPAYGLWCAIAGAIAWALM 73 (269)
T ss_pred ccCCCchhhHHHHHHHHHHHHHH
Confidence 45777777777777777777765
No 34
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=26.20 E-value=2.4e+02 Score=24.87 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhCC---ChhhHHHHHHhhhHHhhhcC
Q psy14245 73 LAGITVGLTLIPQAIAYASLAGL---NPKYGLYSSIFGGVMYIFLG 115 (181)
Q Consensus 73 ~AGltval~~IPq~lAyA~lAgl---pp~~GLysa~~~~liyalfG 115 (181)
.+++...++.+|.++..|.++|+ =|..|-.-+.+|..+++++-
T Consensus 210 ~~~i~l~ilgv~~alllgil~glln~IPyiG~~i~~ip~~l~~~~~ 255 (344)
T PRK12287 210 VAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIIQVLVF 255 (344)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Confidence 34555666778999999887774 48888888888888888763
No 35
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=25.08 E-value=72 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHhCC---ChhhHHHHHHhhhHHhhhcCCCcc
Q psy14245 73 LAGITVGLTLIPQAIAYASLAGL---NPKYGLYSSIFGGVMYIFLGTTKQ 119 (181)
Q Consensus 73 ~AGltval~~IPq~lAyA~lAgl---pp~~GLysa~~~~liyalfGsS~~ 119 (181)
++++...++.+|.++..|.++|+ =|..|-.-+.+|..+++++.++..
T Consensus 222 ~~~i~~~~~gvp~a~~~~~l~~~~~~IP~vG~~i~~ip~~~~~~~~~~~~ 271 (341)
T TIGR02872 222 IVLIGLLIIGVDYALTLALIIGIVDILPILGPGAVLVPWALYLFITGNYA 271 (341)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHcCCHH
Confidence 34566677788999999987774 478888888899888887755443
No 36
>PRK11660 putative transporter; Provisional
Probab=24.63 E-value=3.1e+02 Score=26.10 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=40.0
Q ss_pred ChhhHhHHHHHHHHHHHHHhhHHHHHH----HHhC--CChhhHHHHHHhhhHHhhhcCCCccc
Q psy14245 64 NVNAAVSDVLAGITVGLTLIPQAIAYA----SLAG--LNPKYGLYSSIFGGVMYIFLGTTKQL 120 (181)
Q Consensus 64 ~~~~l~~Dl~AGltval~~IPq~lAyA----~lAg--lpp~~GLysa~~~~liyalfGsS~~~ 120 (181)
+++.+..-+..+++++++..=+++.-+ ...| .++-.=|.+--++.++-++||+.+-.
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~ 336 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITAT 336 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCccccc
Confidence 566666666677888887776766433 3333 45666788888888999999988754
No 37
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=20.65 E-value=3.5e+02 Score=22.91 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHhC---CChhhHHHHHHhhhHHhhhcCCC
Q psy14245 73 LAGITVGLTLIPQAIAYASLAG---LNPKYGLYSSIFGGVMYIFLGTT 117 (181)
Q Consensus 73 ~AGltval~~IPq~lAyA~lAg---lpp~~GLysa~~~~liyalfGsS 117 (181)
+.++...++.+|.++-+|.+++ +=|..|-.-+.+|..+|++..+.
T Consensus 208 ~~~i~~~~~gi~~~~l~~~l~~i~~~IP~iG~~i~~ip~~i~~~~~~~ 255 (327)
T PF01594_consen 208 LTFIGFSIFGIPYALLLGVLAFILSFIPYIGPIIVLIPAAIYALLQGG 255 (327)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 3556666778899999987766 45888888888898888777665
No 38
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=20.32 E-value=3.7e+02 Score=24.09 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHHhhHHHH----HHHHhCCC------hhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhcc
Q psy14245 69 VSDVLAGITVGLTLIPQAIA----YASLAGLN------PKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHD 138 (181)
Q Consensus 69 ~~Dl~AGltval~~IPq~lA----yA~lAglp------p~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~ 138 (181)
..-++.-+.+.++.+-++++ .+..+|.+ ...|+.+--+..++.++||+++..+....+......+..-
T Consensus 231 ~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g~i~~t~v~S-- 308 (389)
T PF00860_consen 231 PGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAGGIAATGVAS-- 308 (389)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHHHHHHHTB----
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccchhhhhhcccc--
Confidence 34455666677777777654 44566654 4469999999999999999988877765554333331110
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-hccCcccccccCcc
Q psy14245 139 TSLEMVAFLTFLTGLVQLTCGL-LSLGKCKSYLYYGT 174 (181)
Q Consensus 139 ~~~~~~~~lt~laGiiqlllgl-lrlG~l~~~ls~~V 174 (181)
--..+.+|++.+++++ .+++.+..-+|.+|
T Consensus 309 ------r~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v 339 (389)
T PF00860_consen 309 ------RRVGLTAGVILILFGLSPKFAPLFASIPSPV 339 (389)
T ss_dssp ------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHH
T ss_pred ------ceeeeHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 0122234444444443 24555555666555
No 39
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=20.10 E-value=97 Score=28.69 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=32.6
Q ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHhc-cCcccccccCcccc
Q psy14245 134 TYTHDTSLEMVAFLTFLTGLVQLTCGLLS-LGKCKSYLYYGTPM 176 (181)
Q Consensus 134 ~~v~~~~~~~~~~lt~laGiiqlllgllr-lG~l~~~ls~~Vv~ 176 (181)
+...+.+..-+.-.-+++|++.++.|+.+ +++++++||.++..
T Consensus 80 ~~~~~~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~ 123 (378)
T PF03594_consen 80 TSLPGYSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIAS 123 (378)
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 44445566666666678899999998887 59999999998754
Done!