Query psy14245
Match_columns 181
No_of_seqs 158 out of 1233
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:05:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 98.0 2.8E-05 9.5E-10 70.0 9.4 106 67-175 13-124 (429)
2 3qe7_A Uracil permease; uracil 86.9 1.9 6.5E-05 38.4 7.8 96 72-175 228-334 (429)
3 1bts_A BAND 3 anion transport 52.3 8.5 0.00029 21.4 1.9 20 99-118 5-24 (26)
4 2xq2_A Sodium/glucose cotransp 13.7 3.7E+02 0.013 24.1 6.6 36 86-121 151-186 (593)
5 2l8s_A Integrin alpha-1; trans 13.1 1.4E+02 0.0048 19.3 2.5 27 144-170 11-40 (54)
6 2k1a_A Integrin alpha-IIB; sin 13.1 2E+02 0.0069 17.4 3.2 26 143-168 11-39 (42)
7 2knc_A Integrin alpha-IIB; tra 12.6 1.5E+02 0.005 19.1 2.5 28 143-170 13-43 (54)
8 2ksf_A Sensor protein KDPD; me 10.4 4.5E+02 0.015 18.3 5.1 21 100-120 53-73 (107)
9 3p04_A Uncharacterized BCR; SE 9.2 3.3E+02 0.011 18.8 3.7 36 45-80 20-57 (87)
10 3dh4_A Sodium/glucose cotransp 7.9 6.3E+02 0.022 22.2 5.8 37 86-122 122-158 (530)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=97.97 E-value=2.8e-05 Score=70.00 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccc-cchhHH-HHHHHHHhhccchHHHH
Q psy14245 67 AAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLS-VGPTSI-MALLCLTYTHDTSLEMV 144 (181)
Q Consensus 67 ~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~-iGp~a~-~sl~~~~~v~~~~~~~~ 144 (181)
.+++++++|+.-.+.+..-.++--.+-|+||..+++++.++.++.++++++|.-. .|++-+ ++.+.. +.+ ++.+.+
T Consensus 13 ~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g~~~~ 90 (429)
T 3qe7_A 13 PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LGYEVA 90 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cCHHHH
Confidence 3678899999877666555555555559999999999999999999998777644 576533 333332 223 788999
Q ss_pred HHHHHHHHHHHHHHHHh--ccC--cccccccCccc
Q psy14245 145 AFLTFLTGLVQLTCGLL--SLG--KCKSYLYYGTP 175 (181)
Q Consensus 145 ~~lt~laGiiqlllgll--rlG--~l~~~ls~~Vv 175 (181)
....+++|++++++|++ |+| ++.+++|. ++
T Consensus 91 ~gavi~aGli~ill~~~~~~~g~~~l~~~~Pp-vv 124 (429)
T 3qe7_A 91 LGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPP-AA 124 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCC-ee
Confidence 99999999999999999 886 99999995 44
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=86.87 E-value=1.9 Score=38.42 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhHHH----HHHHHhCCC------hhhHHHHHHhhhHHhhhcCCCcccccchhHHHHHHHHHhhccchH
Q psy14245 72 VLAGITVGLTLIPQAI----AYASLAGLN------PKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLCLTYTHDTSL 141 (181)
Q Consensus 72 l~AGltval~~IPq~l----AyA~lAglp------p~~GLysa~~~~liyalfGsS~~~~iGp~a~~sl~~~~~v~~~~~ 141 (181)
+..=++++++..=|.+ |.+..+|-+ ...++.+--++.++-++||+++..+.+.......+.+ +. .
T Consensus 228 i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg--~~-s-- 302 (429)
T 3qe7_A 228 ILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITR--VY-S-- 302 (429)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHT--BC-C--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcC--Cc-c--
Confidence 3344556666555554 445566643 3579999999999999999999887654433222221 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-ccCcccccccCccc
Q psy14245 142 EMVAFLTFLTGLVQLTCGLL-SLGKCKSYLYYGTP 175 (181)
Q Consensus 142 ~~~~~lt~laGiiqlllgll-rlG~l~~~ls~~Vv 175 (181)
+. ....+|++.+++|++ +++.+...+|.+|.
T Consensus 303 r~---~~~~ag~~lillgl~pk~~al~~~IP~~vl 334 (429)
T 3qe7_A 303 TW---VIGGAAIFAILLSCVGKLAAAIQMIPLPVM 334 (429)
T ss_dssp HH---HHHHHHHHHHHHTCCHHHHHHHTTSCHHHH
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 22 346789999999987 68899999998874
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=52.26 E-value=8.5 Score=21.43 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=14.9
Q ss_pred hHHHHHHhhhHHhhhcCCCc
Q psy14245 99 YGLYSSIFGGVMYIFLGTTK 118 (181)
Q Consensus 99 ~GLysa~~~~liyalfGsS~ 118 (181)
-.+.++.+.+++|++|++-|
T Consensus 5 E~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 5 ELLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 35678888899999998865
No 4
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=13.66 E-value=3.7e+02 Score=24.12 Aligned_cols=36 Identities=14% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCcccc
Q psy14245 86 AIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLS 121 (181)
Q Consensus 86 ~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~ 121 (181)
+.++..+.|+|...++.-..+-..+|.++|+-|..+
T Consensus 151 ~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 151 GLALETILGIPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 455667889999999888888889999999999764
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.13 E-value=1.4e+02 Score=19.25 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHH---HHHhccCcccccc
Q psy14245 144 VAFLTFLTGLVQLT---CGLLSLGKCKSYL 170 (181)
Q Consensus 144 ~~~lt~laGiiqll---lgllrlG~l~~~l 170 (181)
...++.++|+..+. +.+.++||+-+=-
T Consensus 11 iIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 44566667766544 6777888775533
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=13.07 E-value=2e+02 Score=17.40 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHH---HHHhccCcccc
Q psy14245 143 MVAFLTFLTGLVQLT---CGLLSLGKCKS 168 (181)
Q Consensus 143 ~~~~lt~laGiiqll---lgllrlG~l~~ 168 (181)
....++.+.|+..+. +.+.++||.-+
T Consensus 11 wiIi~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 455666777777654 67788888643
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.64 E-value=1.5e+02 Score=19.08 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHH---HHHhccCcccccc
Q psy14245 143 MVAFLTFLTGLVQLT---CGLLSLGKCKSYL 170 (181)
Q Consensus 143 ~~~~lt~laGiiqll---lgllrlG~l~~~l 170 (181)
....++.++|++.+. +.+.++||+-+=-
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 455666677776654 6777888876543
No 8
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=10.36 E-value=4.5e+02 Score=18.30 Aligned_cols=21 Identities=5% Similarity=0.058 Sum_probs=9.3
Q ss_pred HHHHHHhhhHHhhhcCCCccc
Q psy14245 100 GLYSSIFGGVMYIFLGTTKQL 120 (181)
Q Consensus 100 GLysa~~~~liyalfGsS~~~ 120 (181)
|+.+++.+.+.+-+|=..|..
T Consensus 53 a~~aa~ls~l~~nffF~~P~~ 73 (107)
T 2ksf_A 53 SVVATVINVVSFDLFFIAPRG 73 (107)
T ss_dssp CSHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHHHHHHHHHhhcCCCc
Confidence 444444444444444444433
No 9
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=9.22 E-value=3.3e+02 Score=18.79 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHhccccccccCCCCChhhHh--HHHHHHHHHHH
Q psy14245 45 KLTELLHRKVPILAWLPKYNVNAAV--SDVLAGITVGL 80 (181)
Q Consensus 45 ~~~~~~~~~~Pil~Wl~~Y~~~~l~--~Dl~AGltval 80 (181)
.....++..-|++--+.+-+.+.-+ -|++||.+-|+
T Consensus 20 ~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal 57 (87)
T 3p04_A 20 VIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFAL 57 (87)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEe
Confidence 4456678888888888877765444 49999988764
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.86 E-value=6.3e+02 Score=22.20 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=25.7
Q ss_pred HHHHHHHhCCChhhHHHHHHhhhHHhhhcCCCccccc
Q psy14245 86 AIAYASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSV 122 (181)
Q Consensus 86 ~lAyA~lAglpp~~GLysa~~~~liyalfGsS~~~~i 122 (181)
+..+..+.|+|...++.-..+-.++|.++|+=+-.+.
T Consensus 122 ~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~ 158 (530)
T 3dh4_A 122 GLALETILGIPLMYSILGLALFALVYSIYGGLSAVVW 158 (530)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4456678899999999999888999999999887654
Done!