Query psy14245
Match_columns 181
No_of_seqs 158 out of 1233
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:05:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14245.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14245hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5c_ f.23.29.1 (C:) Sec-bet 15.9 51 0.0037 17.4 2.3 28 63-90 3-30 (32)
2 d1y9ia_ a.195.1.1 (A:) Low tem 8.9 67 0.0049 23.2 1.8 28 55-82 121-151 (159)
3 d1tlqa_ a.195.1.1 (A:) Hypothe 8.7 70 0.0051 23.2 1.8 28 55-82 122-151 (161)
4 d1vpda1 a.100.1.1 (A:164-296) 8.6 2E+02 0.015 18.6 4.3 31 67-99 9-39 (133)
5 d1tdha3 g.39.1.8 (A:247-290) E 7.0 49 0.0036 19.0 0.1 11 2-12 17-27 (44)
6 d2ax3a1 c.72.1.4 (A:212-489) H 6.3 1.1E+02 0.0083 22.9 2.1 15 68-82 217-231 (278)
7 d1rfza_ a.195.1.1 (A:) YutG ho 6.1 86 0.0062 22.7 1.1 27 55-81 128-157 (164)
8 d1kyha_ c.72.1.4 (A:) Hypothet 5.9 1.2E+02 0.009 22.8 2.1 14 69-82 213-226 (275)
9 d2cvza1 a.100.1.1 (A:158-289) 5.5 3.5E+02 0.026 17.2 4.2 31 67-99 8-38 (132)
10 d1kf6c_ f.21.2.2 (C:) Fumarate 4.8 1.4E+02 0.011 20.7 1.6 29 147-175 40-68 (130)
No 1
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=15.88 E-value=51 Score=17.37 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=20.0
Q ss_pred CChhhHhHHHHHHHHHHHHHhhHHHHHH
Q psy14245 63 YNVNAAVSDVLAGITVGLTLIPQAIAYA 90 (181)
Q Consensus 63 Y~~~~l~~Dl~AGltval~~IPq~lAyA 90 (181)
+++-..+.+-+-|+||+.+.|-.-+.|+
T Consensus 3 fskirvkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 3 FSKIRVKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeeccceEEEEEEehhhHHHHHhhc
Confidence 3444456777889999999887666653
No 2
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=8.94 E-value=67 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.5
Q ss_pred cccccC-CCCC--hhhHhHHHHHHHHHHHHH
Q psy14245 55 PILAWL-PKYN--VNAAVSDVLAGITVGLTL 82 (181)
Q Consensus 55 Pil~Wl-~~Y~--~~~l~~Dl~AGltval~~ 82 (181)
.+++|+ .+.+ ..-+..|++||+..++.+
T Consensus 121 g~i~~ld~~~~g~~gv~lDDivagi~Aa~~s 151 (159)
T d1y9ia_ 121 GILAKLNEHDGIAVHTFLDDIVGAIAAAAAS 151 (159)
T ss_dssp THHHHTTCCCSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHHH
Confidence 346688 4554 578999999999887643
No 3
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=8.69 E-value=70 Score=23.17 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=20.5
Q ss_pred cccccCCCCC--hhhHhHHHHHHHHHHHHH
Q psy14245 55 PILAWLPKYN--VNAAVSDVLAGITVGLTL 82 (181)
Q Consensus 55 Pil~Wl~~Y~--~~~l~~Dl~AGltval~~ 82 (181)
.+++|+.+.+ ..-+..|++||+..++..
T Consensus 122 g~i~~ld~~~~g~gv~lDDivagi~A~~~s 151 (161)
T d1tlqa_ 122 GIIKELDESPDGIHTFLDDIVAALAAAAAS 151 (161)
T ss_dssp THHHHTSSSCSCCCTTHHHHHHHHHHHHHH
T ss_pred HhHHHHhhcCCCcceeHHHHHHHHHHHHHH
Confidence 3467776655 467899999999887643
No 4
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}
Probab=8.64 E-value=2e+02 Score=18.62 Aligned_cols=31 Identities=23% Similarity=0.480 Sum_probs=23.9
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhh
Q psy14245 67 AAVSDVLAGITVGLTLIPQAIAYASLAGLNPKY 99 (181)
Q Consensus 67 ~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~ 99 (181)
.+..+++.+..+..+ =+++++|.-+|++|..
T Consensus 9 Kl~nN~l~~~~~~~~--aEal~la~~~Gid~~~ 39 (133)
T d1vpda1 9 KLANQVIVALNIAAM--SEALTLATKAGVNPDL 39 (133)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHcCCCHHH
Confidence 456677777766555 5999999999999864
No 5
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.05 E-value=49 Score=19.03 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=8.6
Q ss_pred cccCCcCCCcc
Q psy14245 2 YIVPDMLNLKP 12 (181)
Q Consensus 2 ~~~~~~~~~~~ 12 (181)
|.+|+|.+++-
T Consensus 17 Y~~pgM~sL~D 27 (44)
T d1tdha3 17 YGMPGMSSLQD 27 (44)
T ss_dssp TTCTTCEEEEC
T ss_pred HcCCchhhhhc
Confidence 78899988754
No 6
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.30 E-value=1.1e+02 Score=22.91 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHH
Q psy14245 68 AVSDVLAGITVGLTL 82 (181)
Q Consensus 68 l~~Dl~AGltval~~ 82 (181)
=.+|++||+.-++++
T Consensus 217 GtGDvLaGiIaallA 231 (278)
T d2ax3a1 217 GSGDVLTGMIAGFIA 231 (278)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 458999999999977
No 7
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=6.14 E-value=86 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=19.5
Q ss_pred cccccC-CCCC--hhhHhHHHHHHHHHHHH
Q psy14245 55 PILAWL-PKYN--VNAAVSDVLAGITVGLT 81 (181)
Q Consensus 55 Pil~Wl-~~Y~--~~~l~~Dl~AGltval~ 81 (181)
.+++|+ .+.+ ..-+..|++||+..++.
T Consensus 128 g~i~~ld~~~~g~~gv~lDDivagi~Aaa~ 157 (164)
T d1rfza_ 128 GILQYLNDKSTGKCNTFLDDIVGAIAAAAS 157 (164)
T ss_dssp THHHHHHCSSSSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHHHHH
Confidence 345677 4444 47889999999987764
No 8
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]}
Probab=5.92 E-value=1.2e+02 Score=22.82 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHH
Q psy14245 69 VSDVLAGITVGLTL 82 (181)
Q Consensus 69 ~~Dl~AGltval~~ 82 (181)
.+|++||++.++++
T Consensus 213 sGDvLaGiIa~~lA 226 (275)
T d1kyha_ 213 TGDTLTGMILGMLC 226 (275)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 57999999999987
No 9
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=5.51 E-value=3.5e+02 Score=17.21 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=21.8
Q ss_pred hHhHHHHHHHHHHHHHhhHHHHHHHHhCCChhh
Q psy14245 67 AAVSDVLAGITVGLTLIPQAIAYASLAGLNPKY 99 (181)
Q Consensus 67 ~l~~Dl~AGltval~~IPq~lAyA~lAglpp~~ 99 (181)
.+..+.+.+..+ .++=|++++|.-+|++|..
T Consensus 8 Kl~nN~l~~~~~--~~~aEal~la~~~Gld~~~ 38 (132)
T d2cvza1 8 KAINNALLAVNL--WAAGEGLLALVKQGVSAEK 38 (132)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHH
Confidence 345566655544 4455999999999999764
No 10
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=4.78 E-value=1.4e+02 Score=20.66 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhccCcccccccCccc
Q psy14245 147 LTFLTGLVQLTCGLLSLGKCKSYLYYGTP 175 (181)
Q Consensus 147 lt~laGiiqlllgllrlG~l~~~ls~~Vv 175 (181)
+.++.|++.+.-|--......+|+.+|++
T Consensus 40 lvLl~Gl~~L~~g~~aw~~fv~flqnP~v 68 (130)
T d1kf6c_ 40 IELIFGLFALKNGPEAWAGFVDFLQNPVI 68 (130)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCcHH
Confidence 33334444433333333333444444443
Done!