RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14245
(181 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-07
Identities = 36/170 (21%), Positives = 57/170 (33%), Gaps = 44/170 (25%)
Query: 31 QLSRDKLEELTMKTKLTELLHRK-VPILAWL------PK--YNVNAAVSDVLAGITVGLT 81
+ S + L EL T E + + + IL WL P Y ++ +S L +G+
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL----IGVI 244
Query: 82 LIPQAIAY---ASLAGLNPKYGLYSSIFGGVMYIFLGTTKQLSVGPTSIMALLC-LTYT- 136
Q Y A L G P G S G G ++ L + A+ T +
Sbjct: 245 ---QLAHYVVTAKLLGFTP--GELRSYLKGA----TGHSQGL------VTAVAIAETDSW 289
Query: 137 ---HDTSLEMVAFLTFLTGL-VQLTCGLLSL--GKCKSYLYYG----TPM 176
+ + + L F G+ SL + L +PM
Sbjct: 290 ESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Score = 30.0 bits (67), Expect = 0.45
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 18/65 (27%)
Query: 32 LSRDKLEELTMKTKLTELLHRKVPILAWLPKYNVNAAVSDVLAGITVGLTLIPQAIAYAS 91
L+++++++ KT ++V I VN A + V++G PQ S
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEI------SLVNGAKNLVVSG-------PPQ-----S 385
Query: 92 LAGLN 96
L GLN
Sbjct: 386 LYGLN 390
Score = 28.5 bits (63), Expect = 1.5
Identities = 47/272 (17%), Positives = 78/272 (28%), Gaps = 115/272 (42%)
Query: 6 DMLNLKPVHLDNAKLRDSGFEFQVP--------QLSRDK----LEELTMK-------TKL 46
D + +P+ L + L VP QL +++ L E T T
Sbjct: 2 DAYSTRPLTLSHGSLEHV---LLVPTASFFIASQL-QEQFNKILPEPTEGFAADDEPTTP 57
Query: 47 TELLHR----------------KVPIL---------AWLPKYNVNAAVSDVLAGITVGLT 81
EL+ + +L +L +++A + +L L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 82 LIPQAI-AY--ASLAGLNP----------------KYGLYSSIFGG----VMYIF----- 113
+ I Y A + P L + IFGG Y F
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGGQGNTDDY-FEELRD 175
Query: 114 LGTTKQLSVGP---TSIMALLCLT---------YTHDTSLEMVAFLT---------FLT- 151
L T + VG S L L +T L ++ +L +L
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLS 233
Query: 152 --------GLVQLTCGLLSLGKCKSYLYYGTP 175
G++QL +++ K + TP
Sbjct: 234 IPISCPLIGVIQLAHYVVT---AKLLGF--TP 260
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics
center for structural genomics, JCSG, protein structure
INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima
MSB8}
Length = 326
Score = 35.3 bits (82), Expect = 0.006
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 34 RDKLEELTMKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAGITVGLTLI 83
+T++T++T+LL + PIL AW + AAVS+ AG GL +I
Sbjct: 7 HHHHHHMTVRTRVTDLLEIEHPILMGGMAWAGTPTLAAAVSE--AG---GLGII 55
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 33.0 bits (76), Expect = 0.033
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 41 TMKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAG 75
+T+ TE + PI+ W+ + + AAV++ AG
Sbjct: 3 VFRTRFTETFGVEHPIMQGGMQWVGRAEMAAAVAN--AG 39
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis,
antibiotics, oxidoreductase, flavoprotein; HET: FMN;
1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 33.0 bits (76), Expect = 0.033
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 42 MKTKLTELLHRKVPIL----AWLPKYNVNAAVSDVLAGITVGLTLI 83
MKT++TELL PI AW+ ++ AVS AG GL +I
Sbjct: 1 MKTRITELLKIDYPIFQGGMAWVADGDLAGAVSK--AG---GLGII 41
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.6 bits (62), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 9 NLKPVHLDNAKLRDSGFEFQVP 30
NLK V + KL D GFEF+
Sbjct: 286 NLKSVCFSSKKLTDLGFEFKYS 307
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 27.4 bits (61), Expect = 2.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 15 LDNAKLRDSGFEFQVP 30
L NA+L SG++ P
Sbjct: 249 LSNARLLASGYQLIYP 264
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 27.2 bits (61), Expect = 2.8
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 5 PDMLNLKPVHLDNAKLRDSGFEFQVPQLSRDKLEE 39
D + + + KL GF F + +EE
Sbjct: 293 GDFPPKSKLIISSEKLVKEGFSF------KYGIEE 321
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 27.2 bits (61), Expect = 3.2
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 5 PDMLNLKPVHLDNAKLRDSGFEFQVP 30
++ + L+ KL D+GF+F+
Sbjct: 279 KEIKGARLPDLNTKKLVDAGFDFKYT 304
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.7
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 23/102 (22%)
Query: 10 LKPVHLD----NAKLRDSGFEFQVPQLSRDKLEELTM-KTKLTE---LLHRKV-PILAWL 60
+ V LD K+R + + L++L K + + R V IL +L
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 61 PKYNVNAAVSDVLAGITVGLTLIPQAIAYASLAGLNPKYGLY 102
PK N S T + + +A + ++
Sbjct: 553 PKIEENLICSK--------YTDLLR------IALMAEDEAIF 580
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 26.2 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 42 MKTKLTELLHRKVPIL----AWLPKY-NVNAAVSDVLAG 75
M + LT+L +PI+ A + AAV + AG
Sbjct: 1 MSSALTDLF--PLPIVQAPMAGGVSVPQLAAAVCE--AG 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.408
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,611,277
Number of extensions: 143611
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)