RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14245
         (181 letters)



>d1v43a1 b.40.6.3 (A:246-299) Hypothetical protein PH0022,
          C-terminal domain {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 54

 Score = 27.5 bits (61), Expect = 0.17
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 5  PDMLNLKPVHLDNAKLRDSGFEFQVPQLSRDKLEELTMKT 44
          P+M N+  V + +  L   GF  ++PQ   D L++   KT
Sbjct: 1  PEM-NILEVSVGDGYLEGRGFRIELPQDLMDLLKDYVGKT 39


>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 26.6 bits (59), Expect = 0.69
 Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)

Query: 19 KLRDSGFEFQVPQLSRDKLEELTMKTKLTELLHRKVP 55
          KL          ++ R  L  +     LT+ L     
Sbjct: 26 KLLSVPLREGYGRIPRGALLSMD-ALDLTDKLVSFYL 61


>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate
          dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId:
          1314]}
          Length = 365

 Score = 27.3 bits (60), Expect = 1.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 29 VPQLSRDKLEELTMKTKLTELLHRKVPILA 58
          +P  S     E+ +KTKL + L   +PI+ 
Sbjct: 20 IPAESHVLPNEVDLKTKLADNLTLNIPIIT 49


>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
           catalytic domain {Helicobacter pylori [TaxId: 210]}
          Length = 389

 Score = 26.6 bits (59), Expect = 2.0
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 24/81 (29%)

Query: 42  MKTKLTEL-----LHRKVPILAWLPKYNVNAAV----SDVLAGITVG------------L 80
            K +   L      +    I  +L KY +N A+    S+ +  + VG            +
Sbjct: 252 NKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVHHGKAKYDANI 311

Query: 81  TLIPQAIAYASLAGLNPKYGL 101
           T + QA AY    G+  + GL
Sbjct: 312 TFVSQA-AYD--KGIKEELGL 329


>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 93

 Score = 25.1 bits (55), Expect = 2.7
 Identities = 3/37 (8%), Positives = 11/37 (29%), Gaps = 1/37 (2%)

Query: 19 KLRDSGFEFQVPQLSRDKLEELTMKTKLTELLHRKVP 55
           L +          +  + E+ +   ++   L  +  
Sbjct: 27 LLANKAHSRSSSGETPAQPEKTS-GMEVASYLVAQYG 62


>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio
           cholerae [TaxId: 666]}
          Length = 201

 Score = 25.5 bits (56), Expect = 3.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 117 TKQLSVGPTSIMALLCLTYTH 137
            +++S+GP  + A  C+T  H
Sbjct: 171 VEKISLGPKMLFASQCVTLIH 191


>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
          dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
          2336]}
          Length = 330

 Score = 25.8 bits (56), Expect = 3.6
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 29 VPQLSRDKLEELTMKTKLTELLHRKVPILA 58
          VPQ S    +++ + T+LT  +   +P+++
Sbjct: 13 VPQYSEVLPKDVKIDTRLTRQIRINIPLVS 42


>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 201

 Score = 24.8 bits (53), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 31 QLSRDKLEELTMKTKLTE 48
           LS++ LEEL + TK TE
Sbjct: 7  ALSKEILEELQLNTKFTE 24


>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate
          dehydrogenase (IMPDH) {Chinese hamster (Cricetulus
          griseus) [TaxId: 10029]}
          Length = 378

 Score = 25.1 bits (54), Expect = 6.9
 Identities = 5/30 (16%), Positives = 16/30 (53%)

Query: 29 VPQLSRDKLEELTMKTKLTELLHRKVPILA 58
          +P       +++ + + LT+ +  K P+++
Sbjct: 22 LPGYIDFTADQVDLTSALTKKITLKTPLVS 51


>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate
          dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId:
          53953]}
          Length = 368

 Score = 24.7 bits (53), Expect = 7.6
 Identities = 7/30 (23%), Positives = 19/30 (63%)

Query: 29 VPQLSRDKLEELTMKTKLTELLHRKVPILA 58
          +PQ +  + +++ + T++T  +   +PIL+
Sbjct: 21 IPQATEVEPKDVDVSTRITPNVKLNIPILS 50


>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
           (geranyltranstransferase) {Escherichia coli [TaxId:
           562]}
          Length = 299

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 65  VNAAVSDVLAGITVGLTLIPQAIAYASLAG---LNPKYGLYSSIFGGVMYIFL 114
            N A+S  +A +    T + + + Y +L G   L P     +    GV    L
Sbjct: 14  ANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTL 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,768
Number of extensions: 25419
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 11
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)