RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14246
(286 letters)
>gnl|CDD|197624 smart00280, KAZAL, Kazal type serine protease inhibitors. Kazal
type serine protease inhibitors and follistatin-like
domains.
Length = 46
Score = 54.6 bits (132), Expect = 2e-10
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 230 CARICPTIYDPICGTDNKTYSNDCFLQMENCRSRSLVQKLYHGQC 274
C CP YDP+CG+D TYSN+C L C S ++ + G C
Sbjct: 2 CPEACPREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 37.3 bits (87), Expect = 3e-04
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 77 CNHQCDDRREFVCGSDNKFYKSPCEMKRENC--GVGIELSHLGPC 119
C C + VCGSD Y + C + + C G IE+ H GPC
Sbjct: 2 CPEACPREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 34.2 bits (79), Expect = 0.004
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 178 HCRESCWRVSKPTCGSDGNIYSNACRMKSKNCGKH 212
C E+C R P CGSDG YSN C + C
Sbjct: 1 DCPEACPREYDPVCGSDGVTYSNECHLCKAACESG 35
Score = 31.5 bits (72), Expect = 0.034
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 17 CPVSCEGEKERIICGSDGNVYSSECEMRMLNCGSECDLKK 56
CP +C E + + CGSDG YS+EC + C S ++
Sbjct: 2 CPEACPREYDPV-CGSDGVTYSNECHLCKAACESGKSIEV 40
Score = 28.8 bits (65), Expect = 0.40
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 128 NCPVNCDQAPLDGPICGSDGNVYKTNCQMKLLTCGQG 164
+CP C + P+CGSDG Y C + C G
Sbjct: 1 DCPEACPREY--DPVCGSDGVTYSNECHLCKAACESG 35
>gnl|CDD|200959 pfam00050, Kazal_1, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides. Alignment also includes a single domain
from transporters in the OATP/PGT family.
Length = 48
Score = 50.4 bits (121), Expect = 8e-09
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 231 ARICPTIYDPICGTDNKTYSNDCFLQMENCRSRSLVQKLYHGQC 274
CP YDP+CG+D TYSN+C L EN + + + K + G C
Sbjct: 5 PEACPREYDPVCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 27.7 bits (62), Expect = 1.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 81 CDDRREFVCGSDNKFYKSPCEMKRENC--GVGIELSHLGPC 119
C + VCGSD Y + CE+ EN G I H GPC
Sbjct: 8 CPREYDPVCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 26.6 bits (59), Expect = 2.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 ICGSDGNVYSSECEMRMLN 47
+CGSDG YS+ECE+ N
Sbjct: 15 VCGSDGVTYSNECELCNEN 33
Score = 26.2 bits (58), Expect = 3.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 180 RESCWRVSKPTCGSDGNIYSNAC 202
E+C R P CGSDG YSN C
Sbjct: 5 PEACPREYDPVCGSDGVTYSNEC 27
>gnl|CDD|238052 cd00104, KAZAL_FS, Kazal type serine protease inhibitors and
follistatin-like domains. Kazal inhibitors inhibit
serine proteases, such as, trypsin, chyomotrypsin, avian
ovomucoids, and elastases. The inhibitory domain has one
reactive site peptide bond, which serves the cognate
enzyme as substrate. The reactive site peptide bond is a
combining loop which has an identical conformation in
all Kazal inhibitors and in all enzyme/inhibitor
complexes. These Kazal domains (small hydrophobic core
of alpha/beta structure with 3 to 4 disulfide bonds)
often occur in tandem arrays. Similar domains are also
present in follistatin (FS) and follistatin-like family
members, which play an important role in tissue specific
regulation. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a Kazal-like domain
and has five disulfide bonds. Although the Kazal-like
FS substructure is similar to Kazal proteinase
inhibitors, no FS domain has yet been shown to be a
proteinase inhibitor. Follistatin-like family members
include SPARC, also known as, BM-40 or osteonectin, the
Gallus gallus Flik protein, as well as, agrin which has
a long array of FS domains. The kazal-type inhibitor
domain has also been detected in an extracellular loop
region of solute carrier 21 (SLC21) family members
(organic anion transporters) , which may regulate the
specificity of anion uptake. The distant homolog,
Ascidian trypsin inhibitor, is included in this CD.
Length = 41
Score = 48.8 bits (117), Expect = 2e-08
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 234 CPTIYDPICGTDNKTYSNDCFLQMENCRSRSLVQKLYHGQC 274
CP YDP+CG+D KTYSN+C L CRS + ++G C
Sbjct: 1 CPKEYDPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 36.1 bits (84), Expect = 7e-04
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 81 CDDRREFVCGSDNKFYKSPCEMKRENC--GVGIELSHLGPC 119
C + VCGSD K Y + C + C G I ++H GPC
Sbjct: 1 CPKEYDPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 30.7 bits (70), Expect = 0.076
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 183 CWRVSKPTCGSDGNIYSNACRMKSKNCGKHVYVVPIKRC 221
C + P CGSDG YSN C + C +
Sbjct: 1 CPKEYDPVCGSDGKTYSNECHLGCAACRSGRSITVAHNG 39
Score = 27.6 bits (62), Expect = 0.94
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 29 ICGSDGNVYSSECEMRMLNC 48
+CGSDG YS+EC + C
Sbjct: 8 VCGSDGKTYSNECHLGCAAC 27
>gnl|CDD|238648 cd01327, KAZAL_PSTI, Kazal-type pancreatic secretory trypsin
inhibitors (PSTI) and related proteins, including the
second domain of the ovomucoid turkey inhibitor and the
C-terminal domain of the esophagus cancer-related gene-2
protein (ECRG-2), are members of the superfamily of
kazal-type proteinase inhibitors and follistatin-like
proteins.
Length = 45
Score = 47.3 bits (113), Expect = 9e-08
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 233 ICPTIYDPICGTDNKTYSNDCFLQMENCRSRSLVQKLYHGQC 274
CP YDP+CGTD TYSN+C L EN + ++ ++ + G+C
Sbjct: 4 GCPKDYDPVCGTDGVTYSNECLLCAENLKRQTNIRIKHDGEC 45
Score = 29.2 bits (66), Expect = 0.30
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 183 CWRVSKPTCGSDGNIYSNAC 202
C + P CG+DG YSN C
Sbjct: 5 CPKDYDPVCGTDGVTYSNEC 24
>gnl|CDD|191798 pfam07648, Kazal_2, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides.
Length = 42
Score = 42.7 bits (101), Expect = 4e-06
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 234 CPTIYD-PICGTDNKTYSNDCFLQMENCRSRSLVQKLYHGQC 274
CP D P+CG+D KTYSN C L +C ++ Y G C
Sbjct: 1 CPRENDEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 31.5 bits (72), Expect = 0.031
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 86 EFVCGSDNKFYKSPCEMKRENC--GVGIELSHLGPC 119
E VCGSD K Y + C + +C G I++ + G C
Sbjct: 7 EPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 30.4 bits (69), Expect = 0.079
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 21 CEGEKERIICGSDGNVYSSECEMRMLNC 48
C E + +CGSDG YS++C + +C
Sbjct: 1 CPRENDEPVCGSDGKTYSNKCALCCASC 28
Score = 28.8 bits (65), Expect = 0.28
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 187 SKPTCGSDGNIYSNACRMKSKNCGKH 212
+P CGSDG YSN C + +C
Sbjct: 6 DEPVCGSDGKTYSNKCALCCASCLLG 31
Score = 26.1 bits (58), Expect = 2.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 139 DGPICGSDGNVYKTNCQMKLLTCGQGVVRVSKRHC 173
D P+CGSDG Y C + +C G K
Sbjct: 6 DEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEG 40
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 34.6 bits (80), Expect = 0.052
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 65 PVPLHHCPTTALCNHQC---DDRREFVCGSDNKFYKSPCEMKRENCGVGIELSHLG-PCN 120
P HH + CN C VCG + Y SPC + G G + S N
Sbjct: 413 PSDSHHLEPLSSCNEDCSCDTSFFPPVCGDNGLTYLSPCHAGSSSSGTGCDTSCSTWSNN 472
Query: 121 N-----ISAHRENCPVNC 133
SA + CP +C
Sbjct: 473 CSSGNSHSASKGYCPSDC 490
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 27.8 bits (62), Expect = 7.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 63 VVPVPLHHCPTTALCNHQC 81
VPVPL+HC L N C
Sbjct: 246 CVPVPLYHCFGMVLANLGC 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.465
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,063,158
Number of extensions: 1102530
Number of successful extensions: 670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 44
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)