BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14249
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40657|SOX15_DROME Putative transcription factor SOX-15 OS=Drosophila melanogaster
GN=Sox15 PE=2 SV=2
Length = 784
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58
Q K+AKE RIRRPMNAFMVWAK+ERKKLADENPDLHNADLSKML + + P
Sbjct: 206 QSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLGKKWRSLTP 258
>sp|Q90ZH9|S17AB_XENLA Transcription factor Sox-17-alpha-B OS=Xenopus laevis GN=sox17a-b
PE=1 SV=1
Length = 377
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 51 RSKAEGRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|O42601|S17B1_XENLA Transcription factor Sox-17-beta.1 OS=Xenopus laevis GN=sox17b.1
PE=1 SV=1
Length = 373
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 51 RSKAEGRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|A5D8R3|S17B3_XENLA Transcription factor Sox-17-beta.3 OS=Xenopus laevis GN=sox17b.3
PE=2 SV=1
Length = 373
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 51 RSKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|Q3KQ35|S17AA_XENLA Transcription factor Sox-17-alpha-A OS=Xenopus laevis GN=sox17a-a
PE=1 SV=1
Length = 380
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 54 RSKAEARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 97
>sp|Q8AWH3|SX17A_XENTR Transcription factor Sox-17-alpha OS=Xenopus tropicalis GN=sox17a
PE=2 SV=1
Length = 383
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 58 EARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 97
>sp|Q61473|SOX17_MOUSE Transcription factor SOX-17 OS=Mus musculus GN=Sox17 PE=1 SV=1
Length = 419
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/44 (72%), Positives = 37/44 (84%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 61 RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 104
>sp|Q9H6I2|SOX17_HUMAN Transcription factor SOX-17 OS=Homo sapiens GN=SOX17 PE=1 SV=1
Length = 414
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 65 ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 104
>sp|P43680|SOX18_MOUSE Transcription factor SOX-18 OS=Mus musculus GN=Sox18 PE=1 SV=3
Length = 377
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/46 (73%), Positives = 40/46 (86%)
Query: 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+++TA E RIRRPMNAFMVWAK ERK+LA +NPDLHNA LSKML +
Sbjct: 70 ERQTADELRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGK 115
>sp|P40646|SOX7_MOUSE Transcription factor SOX-7 OS=Mus musculus GN=Sox7 PE=1 SV=2
Length = 380
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 40 SSESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGK 81
>sp|O42342|SOX7_XENLA Transcription factor Sox-7 OS=Xenopus laevis GN=sox7 PE=2 SV=1
Length = 362
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 1 MSAHQQ-QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58
+S H+ ++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML + +P
Sbjct: 27 LSPHRSPREKGSETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSP 85
>sp|Q6GLH8|S17B2_XENTR Transcription factor Sox-17-beta.2 OS=Xenopus tropicalis
GN=sox17b.2 PE=2 SV=2
Length = 373
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 55 EARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|Q6F2F0|S17B3_XENTR Transcription factor Sox-17-beta.3 OS=Xenopus tropicalis
GN=sox17b.3 PE=3 SV=2
Length = 376
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 55 EARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|Q28GD5|SOX7_XENTR Transcription factor Sox-7 OS=Xenopus tropicalis GN=sox7 PE=2
SV=1
Length = 362
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 1 MSAHQQ-QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58
+S H+ ++ E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML + +P
Sbjct: 27 LSPHRSPREKGSETRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGKSWKALSP 85
>sp|P35713|SOX18_HUMAN Transcription factor SOX-18 OS=Homo sapiens GN=SOX18 PE=1 SV=2
Length = 384
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+++ A E RIRRPMNAFMVWAK ERK+LA +NPDLHNA LSKML +
Sbjct: 76 ERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGK 121
>sp|Q8AWH2|S17B1_XENTR Transcription factor Sox-17-beta.1 OS=Xenopus tropicalis
GN=sox17b.1 PE=2 SV=1
Length = 376
Score = 69.7 bits (169), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 55 EARIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGK 94
>sp|Q9BT81|SOX7_HUMAN Transcription factor SOX-7 OS=Homo sapiens GN=SOX7 PE=1 SV=1
Length = 388
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
E RIRRPMNAFMVWAK ERK+LA +NPDLHNA+LSKML +
Sbjct: 42 ESRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELSKMLGK 81
>sp|B3DLD3|SOX18_XENTR Transcription factor Sox-18 OS=Xenopus tropicalis GN=sox18 PE=2
SV=1
Length = 362
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+ RIRRPMNAFMVWAK ERK+LA +NPDLHNA LSKML +
Sbjct: 65 DPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQ 104
>sp|Q90ZH7|SX18B_XENLA Transcription factor Sox-18B OS=Xenopus laevis GN=sox18-b PE=1 SV=1
Length = 361
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+ RIRRPMNAFMVWAK ERK+LA +NPDLHNA LSKML +
Sbjct: 63 DPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQ 102
>sp|Q90ZH8|SX18A_XENLA Transcription factor Sox-18A OS=Xenopus laevis GN=sox18-a PE=1 SV=1
Length = 363
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
+ RIRRPMNAFMVWAK ERK+LA +NPDLHNA LSKML +
Sbjct: 65 DPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGQ 104
>sp|P47792|SX19A_DANRE Transcription factor Sox-19a OS=Danio rerio GN=sox19a PE=1 SV=2
Length = 297
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 39/50 (78%)
Query: 1 MSAHQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
+++ QQQ + +++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 39 VNSQQQQSSDPMDKVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 88
>sp|P40650|SX11B_XENLA Transcription factor Sox-11-B OS=Xenopus laevis GN=sox11-b PE=1
SV=2
Length = 374
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 45 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 81
>sp|P35716|SOX11_HUMAN Transcription factor SOX-11 OS=Homo sapiens GN=SOX11 PE=1 SV=2
Length = 441
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 49 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 85
>sp|P48435|SOX11_CHICK Transcription factor SOX-11 OS=Gallus gallus GN=SOX11 PE=2 SV=1
Length = 396
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 49 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 85
>sp|P48430|SOX2_CHICK Transcription factor SOX-2 OS=Gallus gallus GN=SOX2 PE=1 SV=1
Length = 315
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 2 SAHQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
SA QK + + R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 27 SAANNQKNSPD-RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 74
>sp|Q6P0E1|SOX2_DANRE Transcription factor Sox-2 OS=Danio rerio GN=sox2 PE=2 SV=1
Length = 315
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 2 SAHQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
S+ QK + + RI+RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 26 SSGNNQKNSPD-RIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 73
>sp|Q66JF1|SOX11_XENTR Transcription factor Sox-11 OS=Xenopus tropicalis GN=sox11 PE=2
SV=1
Length = 383
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 48 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 84
>sp|O00570|SOX1_HUMAN Transcription factor SOX-1 OS=Homo sapiens GN=SOX1 PE=1 SV=2
Length = 391
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
A + R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 46 ANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 86
>sp|P0C1G9|SOX11_RAT Transcription factor SOX-11 OS=Rattus norvegicus GN=Sox11 PE=2
SV=1
Length = 395
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 49 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 85
>sp|Q7M6Y2|SOX11_MOUSE Transcription factor SOX-11 OS=Mus musculus GN=Sox11 PE=1 SV=1
Length = 395
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+K+ER+K+ +++PD+HNA++SK L +
Sbjct: 49 IKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGK 85
>sp|Q68FA4|SOX3_XENTR Transcription factor Sox-3 OS=Xenopus tropicalis GN=sox3 PE=2
SV=1
Length = 307
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 34/39 (87%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
++R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 37 QERVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 75
>sp|P55863|SOX3A_XENLA Transcription factor Sox-3-A OS=Xenopus laevis GN=sox3-a PE=1
SV=1
Length = 309
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
T + R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 33 STLDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 75
>sp|Q06831|SOX4_MOUSE Transcription factor SOX-4 OS=Mus musculus GN=Sox4 PE=1 SV=2
Length = 440
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+++ER+K+ +++PD+HNA++SK L +
Sbjct: 59 IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGK 95
>sp|P57073|SOX8_HUMAN Transcription factor SOX-8 OS=Homo sapiens GN=SOX8 PE=2 SV=1
Length = 446
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 102 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 139
>sp|A5A763|SOX10_PIG Transcription factor SOX-10 OS=Sus scrofa GN=SOX10 PE=2 SV=1
Length = 469
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 107 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 144
>sp|Q06945|SOX4_HUMAN Transcription factor SOX-4 OS=Homo sapiens GN=SOX4 PE=1 SV=1
Length = 474
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 34/37 (91%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
I+RPMNAFMVW+++ER+K+ +++PD+HNA++SK L +
Sbjct: 59 IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGK 95
>sp|P48433|SOX3_CHICK Transcription factor SOX-3 OS=Gallus gallus GN=SOX3 PE=2 SV=1
Length = 312
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 34/41 (82%)
Query: 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
+ + R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 41 SDQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 81
>sp|P48432|SOX2_MOUSE Transcription factor SOX-2 OS=Mus musculus GN=Sox2 PE=1 SV=2
Length = 319
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 42 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 78
>sp|Q04888|SOX10_MOUSE Transcription factor SOX-10 OS=Mus musculus GN=Sox10 PE=2 SV=2
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 141
>sp|P56693|SOX10_HUMAN Transcription factor SOX-10 OS=Homo sapiens GN=SOX10 PE=1 SV=1
Length = 466
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 141
>sp|Q6EJB7|SOX3_DANRE Transcription factor Sox-3 OS=Danio rerio GN=sox3 PE=1 SV=1
Length = 300
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 33/39 (84%)
Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
+ R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 32 QDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 70
>sp|O42569|SOX2_XENLA Transcription factor Sox-2 OS=Xenopus laevis GN=sox2 PE=2 SV=1
Length = 311
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 36 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 72
>sp|P57074|SOX8_CHICK Transcription factor SOX-8 OS=Gallus gallus GN=SOX8 PE=2 SV=1
Length = 470
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 109 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 146
>sp|Q6NVN0|SOX2_XENTR Transcription factor Sox-2 OS=Xenopus tropicalis GN=sox2 PE=2
SV=1
Length = 311
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 36 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 72
>sp|O55170|SOX10_RAT Transcription factor SOX-10 OS=Rattus norvegicus GN=Sox10 PE=1 SV=1
Length = 466
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
++RPMNAFMVWA+ R+KLAD+ P LHNA+LSK L ++
Sbjct: 104 VKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKL 141
>sp|O57401|SOX1_CHICK Transcription factor SOX-1 OS=Gallus gallus GN=SOX1 PE=2 SV=1
Length = 373
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 47 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 83
>sp|P54231|SOX2_SHEEP Transcription factor SOX-2 OS=Ovis aries GN=SOX2 PE=3 SV=1
Length = 320
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 43 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 79
>sp|P48431|SOX2_HUMAN Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1
Length = 317
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 40 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 76
>sp|B1H349|SOX6_XENTR Transcription factor Sox-6 OS=Xenopus tropicalis GN=sox6 PE=2 SV=1
Length = 777
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
+++ E I+RPMNAFMVWAK ER+K+ PD+HN+++SK+L
Sbjct: 563 RSSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILG 605
>sp|A2TED3|SOX1_XENTR Transcription factor Sox-1 OS=Xenopus tropicalis GN=sox1 PE=2
SV=1
Length = 401
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 34/41 (82%)
Query: 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLA 50
A + R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L
Sbjct: 32 ANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLG 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.127 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,883,680
Number of Sequences: 539616
Number of extensions: 523892
Number of successful extensions: 1577
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 265
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)