Query psy14249
Match_columns 60
No_of_seqs 117 out of 1081
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 23:10:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01389 MATA_HMG-box MATA_HMG- 99.8 3.9E-20 8.4E-25 101.5 5.1 46 14-59 1-46 (77)
2 PTZ00199 high mobility group p 99.8 1.1E-19 2.3E-24 103.7 5.9 53 7-59 15-69 (94)
3 KOG0527|consensus 99.8 3.6E-20 7.8E-25 124.6 4.6 53 7-59 55-107 (331)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 1.1E-19 2.4E-24 98.7 5.2 46 14-59 1-46 (72)
5 cd01390 HMGB-UBF_HMG-box HMGB- 99.7 7.9E-18 1.7E-22 88.8 5.0 45 15-59 1-45 (66)
6 PF00505 HMG_box: HMG (high mo 99.7 6E-18 1.3E-22 90.1 4.2 45 15-59 1-45 (69)
7 smart00398 HMG high mobility g 99.7 6.4E-17 1.4E-21 85.7 5.2 46 14-59 1-46 (70)
8 cd00084 HMG-box High Mobility 99.7 9.3E-17 2E-21 84.2 5.0 45 15-59 1-45 (66)
9 COG5648 NHP6B Chromatin-associ 99.7 1.8E-16 3.9E-21 101.2 5.6 53 7-59 63-115 (211)
10 KOG0381|consensus 99.6 4.6E-15 9.9E-20 83.6 5.1 47 13-59 21-67 (96)
11 PF09011 HMG_box_2: HMG-box do 99.5 1.7E-14 3.7E-19 78.4 4.4 48 12-59 1-49 (73)
12 KOG0528|consensus 99.5 4.3E-15 9.4E-20 103.6 1.5 52 8-59 319-370 (511)
13 KOG0526|consensus 99.3 1.3E-12 2.7E-17 92.6 4.8 53 4-58 525-577 (615)
14 KOG3248|consensus 99.3 1.4E-12 3E-17 88.7 4.3 49 10-58 187-235 (421)
15 KOG2746|consensus 98.9 6.4E-10 1.4E-14 80.3 1.9 52 8-59 175-228 (683)
16 KOG4715|consensus 98.8 6.8E-09 1.5E-13 70.5 4.0 52 8-59 58-109 (410)
17 PF04690 YABBY: YABBY protein; 98.0 2.9E-05 6.3E-10 48.7 5.9 48 10-57 117-164 (170)
18 PF04769 MAT_Alpha1: Mating-ty 98.0 2.5E-05 5.4E-10 50.0 5.3 44 8-55 37-80 (201)
19 PF08073 CHDNT: CHDNT (NUC034) 97.5 0.0003 6.4E-09 36.9 4.6 40 19-58 13-52 (55)
20 PF06382 DUF1074: Protein of u 96.9 0.0014 3.1E-08 41.5 3.8 37 19-59 83-119 (183)
21 PF06244 DUF1014: Protein of u 94.7 0.14 3E-06 30.7 5.1 47 11-57 69-115 (122)
22 COG5648 NHP6B Chromatin-associ 92.2 0.059 1.3E-06 35.0 0.7 48 12-59 141-188 (211)
23 PF14887 HMG_box_5: HMG (high 84.7 3.8 8.3E-05 23.0 4.5 43 15-58 4-46 (85)
24 KOG3223|consensus 81.2 1.8 3.9E-05 28.2 2.6 45 12-56 162-206 (221)
25 PF09164 VitD-bind_III: Vitami 80.7 7.1 0.00015 21.2 4.6 32 20-51 9-40 (68)
26 cd08317 Death_ank Death domain 77.0 1.5 3.3E-05 23.9 1.2 21 37-57 2-22 (84)
27 PF13412 HTH_24: Winged helix- 71.3 5.4 0.00012 19.1 2.3 20 33-52 11-30 (48)
28 cd08805 Death_ank1 Death domai 53.0 5.2 0.00011 22.3 0.3 19 39-57 4-22 (84)
29 cd08804 Death_ank2 Death domai 52.5 7 0.00015 21.5 0.7 19 39-57 4-22 (84)
30 cd01670 Death Death Domain: a 51.9 9.8 0.00021 19.8 1.2 15 42-56 2-16 (79)
31 PF13875 DUF4202: Domain of un 51.3 35 0.00076 21.8 3.8 35 21-58 131-165 (185)
32 cd08779 Death_PIDD Death Domai 50.5 8.9 0.00019 21.1 0.9 17 41-57 4-20 (86)
33 PRK15117 ABC transporter perip 49.9 11 0.00023 24.1 1.4 22 38-59 66-88 (211)
34 PF06417 DUF1077: Protein of u 48.7 8.1 0.00018 23.2 0.6 11 17-27 27-37 (124)
35 KOG1827|consensus 46.3 0.5 1.1E-05 35.0 -5.7 40 18-57 552-591 (629)
36 cd08306 Death_FADD Fas-associa 43.6 15 0.00032 20.2 1.1 16 41-56 4-19 (86)
37 cd08318 Death_NMPP84 Death dom 43.2 13 0.00028 20.4 0.8 16 42-57 10-25 (86)
38 cd08803 Death_ank3 Death domai 42.8 6 0.00013 21.9 -0.5 19 39-57 4-22 (84)
39 PF01630 Glyco_hydro_56: Hyalu 42.3 74 0.0016 22.1 4.6 34 21-54 121-154 (337)
40 PF06183 DinI: DinI-like famil 39.9 59 0.0013 17.1 3.6 38 18-55 2-59 (65)
41 TIGR03481 HpnM hopanoid biosyn 39.9 16 0.00034 23.1 1.0 22 38-59 62-84 (198)
42 PF15076 DUF4543: Domain of un 39.0 46 0.001 18.1 2.6 23 6-28 23-45 (75)
43 PF15581 Imm35: Immunity prote 38.6 22 0.00047 20.4 1.3 19 41-59 31-49 (93)
44 PF02650 HTH_WhiA: WhiA C-term 38.5 23 0.00051 19.7 1.4 18 32-49 47-64 (85)
45 PF06242 DUF1013: Protein of u 38.4 26 0.00057 21.5 1.7 19 33-51 77-95 (140)
46 PHA03102 Small T antigen; Revi 36.3 56 0.0012 20.1 3.0 33 26-58 25-58 (153)
47 cd08319 Death_RAIDD Death doma 36.1 14 0.00031 20.4 0.3 16 41-56 4-19 (83)
48 cd00243 Lysin-Sp18 Sp18 and Ly 35.1 54 0.0012 19.6 2.7 32 20-51 53-84 (122)
49 PRK06553 lipid A biosynthesis 34.9 1E+02 0.0022 20.4 4.2 29 29-57 64-92 (308)
50 PF07027 DUF1318: Protein of u 34.6 91 0.002 17.7 4.5 30 28-58 51-80 (95)
51 TIGR02208 lipid_A_msbB lipid A 34.5 81 0.0018 20.8 3.8 29 29-57 57-85 (305)
52 KOG3318|consensus 34.3 20 0.00042 22.8 0.7 11 17-27 71-81 (178)
53 smart00271 DnaJ DnaJ molecular 33.0 65 0.0014 15.5 3.3 33 26-58 19-57 (60)
54 PF13542 HTH_Tnp_ISL3: Helix-t 31.6 39 0.00084 16.1 1.5 30 26-55 13-43 (52)
55 PF01710 HTH_Tnp_IS630: Transp 31.5 47 0.001 19.0 2.0 20 31-50 63-82 (119)
56 PRK08734 lipid A biosynthesis 31.1 1E+02 0.0022 20.4 3.8 29 29-57 47-75 (305)
57 cd07153 Fur_like Ferric uptake 30.7 1E+02 0.0022 17.0 4.2 31 16-51 14-44 (116)
58 smart00351 PAX Paired Box doma 30.6 81 0.0017 18.3 2.9 20 32-51 86-105 (125)
59 PRK05645 lipid A biosynthesis 29.4 1.1E+02 0.0025 19.9 3.8 28 30-57 47-74 (295)
60 PRK06946 lipid A biosynthesis 29.3 1.1E+02 0.0024 20.0 3.7 29 29-57 46-74 (293)
61 PF11903 DUF3423: Protein of u 28.9 1E+02 0.0023 16.6 4.3 35 16-51 22-56 (72)
62 KOG1224|consensus 28.8 24 0.00052 26.6 0.6 17 15-31 750-766 (767)
63 PRK07920 lipid A biosynthesis 28.7 1.1E+02 0.0023 20.1 3.6 29 29-57 41-69 (298)
64 PRK08943 lipid A biosynthesis 28.0 1.2E+02 0.0026 20.1 3.7 28 30-57 67-94 (314)
65 cd08777 Death_RIP1 Death Domai 27.9 32 0.0007 18.9 0.9 17 41-57 4-20 (86)
66 PF10668 Phage_terminase: Phag 27.8 90 0.002 16.3 2.5 23 20-50 11-33 (60)
67 cd08785 CARD_CARD9-like Caspas 27.5 51 0.0011 18.3 1.6 16 15-30 60-75 (86)
68 TIGR00534 OpcA opcA protein. T 27.1 67 0.0014 22.0 2.4 21 36-56 4-24 (311)
69 PRK08733 lipid A biosynthesis 26.6 1.3E+02 0.0028 19.8 3.7 28 30-57 62-89 (306)
70 PF08946 Osmo_CC: Osmosensory 26.2 62 0.0013 16.3 1.6 15 26-40 31-45 (46)
71 PF01527 HTH_Tnp_1: Transposas 26.2 29 0.00064 17.7 0.5 26 25-50 7-34 (76)
72 PF11616 EZH2_WD-Binding: WD r 26.2 80 0.0017 14.5 1.9 13 44-56 13-25 (30)
73 cd08332 CARD_CASP2 Caspase act 26.0 47 0.001 18.4 1.3 17 15-31 61-77 (90)
74 cd06257 DnaJ DnaJ domain or J- 25.2 90 0.0019 14.6 4.0 32 26-57 18-54 (55)
75 PRK06860 lipid A biosynthesis 25.2 1.5E+02 0.0032 19.6 3.8 29 29-57 61-89 (309)
76 PF04255 DUF433: Protein of un 25.1 1E+02 0.0022 15.3 2.8 21 29-49 33-53 (56)
77 PF06099 Phenol_hyd_sub: Pheno 24.9 33 0.00072 18.1 0.5 13 18-30 41-53 (59)
78 cd08780 Death_TRADD Death Doma 23.9 54 0.0012 18.7 1.3 15 42-56 5-19 (90)
79 PF15269 zf-C2H2_7: Zinc-finge 23.6 59 0.0013 16.5 1.3 16 6-21 2-17 (54)
80 TIGR02207 lipid_A_htrB lipid A 23.6 1.6E+02 0.0036 19.2 3.7 27 30-56 56-82 (303)
81 PRK05646 lipid A biosynthesis 23.5 1.6E+02 0.0035 19.4 3.7 28 30-57 59-86 (310)
82 PF07800 DUF1644: Protein of u 23.1 39 0.00085 21.3 0.7 35 22-56 117-151 (162)
83 PRK08025 lipid A biosynthesis 23.0 1.7E+02 0.0037 19.2 3.7 29 29-57 59-87 (305)
84 smart00550 Zalpha Z-DNA-bindin 22.8 96 0.0021 16.0 2.1 11 40-50 23-33 (68)
85 PF14374 Ribos_L4_asso_C: 60S 22.8 52 0.0011 18.2 1.1 14 37-50 7-20 (80)
86 PF13404 HTH_AsnC-type: AsnC-t 22.5 1.1E+02 0.0023 14.5 2.1 17 34-50 12-28 (42)
87 cd08326 CARD_CASP9 Caspase act 22.4 64 0.0014 17.7 1.4 17 15-31 57-73 (84)
88 cd06950 NR_LBD_Tlx_PNR_like Th 22.4 1.7E+02 0.0037 18.2 3.5 44 12-55 8-70 (206)
89 PF11334 DUF3136: Protein of u 21.9 1.5E+02 0.0032 15.9 3.0 30 21-55 9-38 (64)
90 COG1560 HtrB Lauroyl/myristoyl 21.6 1.8E+02 0.0039 19.8 3.7 27 30-56 59-85 (308)
91 KOG0980|consensus 21.3 1.7E+02 0.0037 23.4 3.8 41 20-60 55-102 (980)
92 PRK05906 lipid A biosynthesis 21.0 1.9E+02 0.0041 20.8 3.8 28 30-57 59-86 (454)
93 TIGR02269 Myxococcus xanthus p 20.8 2.4E+02 0.0053 18.4 3.9 24 29-52 175-198 (211)
94 PRK08706 lipid A biosynthesis 20.7 2E+02 0.0042 18.7 3.6 29 29-57 41-69 (289)
95 PRK10597 DNA damage-inducible 20.7 1.7E+02 0.0037 16.2 4.4 40 16-55 12-73 (81)
96 PF04782 DUF632: Protein of un 20.6 57 0.0012 22.3 1.1 23 32-56 161-185 (312)
97 PRK05439 pantothenate kinase; 20.5 56 0.0012 22.2 1.1 31 18-48 6-37 (311)
No 1
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.81 E-value=3.9e-20 Score=101.53 Aligned_cols=46 Identities=33% Similarity=0.670 Sum_probs=44.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 14 ~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+||||+||||||+++.|..|+.+||++++.|||++||++|+.|+++
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~e 46 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPE 46 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHH
Confidence 5899999999999999999999999999999999999999999864
No 2
>PTZ00199 high mobility group protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=103.69 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=49.4
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLH--NADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+||||+|++++|..|..+||+++ +.+|+++||++|+.|+++
T Consensus 15 k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~e 69 (94)
T PTZ00199 15 RKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEE 69 (94)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHH
Confidence 45688999999999999999999999999999986 899999999999999864
No 3
>KOG0527|consensus
Probab=99.80 E-value=3.6e-20 Score=124.63 Aligned_cols=53 Identities=42% Similarity=0.741 Sum_probs=49.9
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..++...+|||||||||+|++.+|.+|.++||++++.||||.||.+||.|+++
T Consensus 55 ~~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~Lse~ 107 (331)
T KOG0527|consen 55 KDKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKLLSEE 107 (331)
T ss_pred cCCCCccccCCCcchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhcCHh
Confidence 35677899999999999999999999999999999999999999999999876
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.80 E-value=1.1e-19 Score=98.72 Aligned_cols=46 Identities=37% Similarity=0.562 Sum_probs=44.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 14 ~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++|||+||||+|++++|.+++.+||++++.|||++||++|+.|+++
T Consensus 1 ~iKrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls~~ 46 (72)
T cd01388 1 HIKRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALSNE 46 (72)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHH
Confidence 5899999999999999999999999999999999999999999864
No 5
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.73 E-value=7.9e-18 Score=88.84 Aligned_cols=45 Identities=27% Similarity=0.532 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
||||+||||+|++++|..++.++|++++.+|++.||++|++|+++
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls~~ 45 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELSEE 45 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHH
Confidence 799999999999999999999999999999999999999999864
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.72 E-value=6e-18 Score=90.09 Aligned_cols=45 Identities=44% Similarity=0.719 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
||||+|||++|+++++..|+.+||+++..+|+++||++|++|+++
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~~~ 45 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLSEE 45 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCCHH
Confidence 799999999999999999999999999999999999999999763
No 7
>smart00398 HMG high mobility group.
Probab=99.69 E-value=6.4e-17 Score=85.68 Aligned_cols=46 Identities=39% Similarity=0.632 Sum_probs=44.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 14 ~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.||||+||||+|+++.|..+..++|++++.+|+++||++|+.|+++
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ 46 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSEE 46 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCHH
Confidence 4899999999999999999999999999999999999999999864
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.68 E-value=9.3e-17 Score=84.21 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
||||+||||+|+++.|..++.++|+++..+|++.+|++|+.|+++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~~ 45 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSEE 45 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHH
Confidence 799999999999999999999999999999999999999999864
No 9
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.66 E-value=1.8e-16 Score=101.23 Aligned_cols=53 Identities=21% Similarity=0.443 Sum_probs=50.5
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+||||+|+.++|+.|+.++|++++.+|+++||+.|++|+++
T Consensus 63 r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Ltd~ 115 (211)
T COG5648 63 RKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELTDE 115 (211)
T ss_pred HHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhccHh
Confidence 46689999999999999999999999999999999999999999999999875
No 10
>KOG0381|consensus
Probab=99.57 E-value=4.6e-15 Score=83.59 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=45.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+.||||++||++|+.++|..++.+||+++..||++++|++|++|+++
T Consensus 21 ~~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~~ 67 (96)
T KOG0381|consen 21 QAPKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAEE 67 (96)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHH
Confidence 48999999999999999999999999999999999999999999875
No 11
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.52 E-value=1.7e-14 Score=78.40 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=40.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADE-NPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~-~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
|++||||+|||+||+.+.+..++.+ .+.....|+++.+|+.|++||++
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls~~ 49 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLSEE 49 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-HH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcCHH
Confidence 5789999999999999999999999 78888999999999999999864
No 12
>KOG0528|consensus
Probab=99.51 E-value=4.3e-15 Score=103.65 Aligned_cols=52 Identities=46% Similarity=0.792 Sum_probs=48.3
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
....+.++||||||||.|.++.|.+|...+|++.+.+|||+||..|+.|+..
T Consensus 319 ~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHNSnISKILGSRWKaMSN~ 370 (511)
T KOG0528|consen 319 RASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMSNT 370 (511)
T ss_pred cCCCCccccCCcchhhcccchhhhhhhhcCccccccchhHHhcccccccccc
Confidence 3456789999999999999999999999999999999999999999999865
No 13
>KOG0526|consensus
Probab=99.34 E-value=1.3e-12 Score=92.58 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=49.6
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 4 HQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 4 ~~~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
+.+++.++|+.|||+++|||+|.+..|..|+.+ +++.+||+|.+|++|+.|++
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~ 577 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA 577 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc
Confidence 346788999999999999999999999999998 99999999999999999985
No 14
>KOG3248|consensus
Probab=99.33 E-value=1.4e-12 Score=88.68 Aligned_cols=49 Identities=31% Similarity=0.467 Sum_probs=45.7
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 10 ~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
....++|+|+||||||++|+|.+|.++.......+|.++||+.|.+|+-
T Consensus 187 ~KkphiKKPLNAFmlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSr 235 (421)
T KOG3248|consen 187 AKKPHIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSR 235 (421)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhH
Confidence 3667899999999999999999999999988899999999999999974
No 15
>KOG2746|consensus
Probab=98.89 E-value=6.4e-10 Score=80.26 Aligned_cols=52 Identities=33% Similarity=0.606 Sum_probs=48.0
Q ss_pred cccCCCCCCCCChHHHHHHHHHH--HHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVER--KKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r--~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.+++++.||||||++|++.+| ..+...||+..+..|++|||+.|-.|.+.
T Consensus 175 nkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DNrtIskiLgewWytL~~~ 228 (683)
T KOG2746|consen 175 NKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDNRTISKILGEWWYTLGPN 228 (683)
T ss_pred CcCcchhhhhhhHHHHHHHhhcCCccchhccCccccchhHHHHHhhhHhhhCch
Confidence 44678899999999999999999 89999999999999999999999999764
No 16
>KOG4715|consensus
Probab=98.79 E-value=6.8e-09 Score=70.54 Aligned_cols=52 Identities=13% Similarity=0.348 Sum_probs=47.3
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..+.+..|-+|+-.||.|++..+++|+..||++...||.|++|.||..|+.+
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~ 109 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPDE 109 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcch
Confidence 3456777888999999999999999999999999999999999999999764
No 17
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.99 E-value=2.9e-05 Score=48.72 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=42.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 10 ~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+.+.+-.|-++||-.|+++.-..|++++|++++.|.=+.++..|+..+
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFP 164 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCc
Confidence 344555677999999999999999999999999999999999998764
No 18
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=97.95 E-value=2.5e-05 Score=50.03 Aligned_cols=44 Identities=25% Similarity=0.508 Sum_probs=36.4
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhc
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLT 55 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~ 55 (60)
......+.+||+|+||+| |.......|+....++|.+|+..|..
T Consensus 37 ~~~~~~~~kr~lN~Fm~F----Rsyy~~~~~~~~Qk~~S~~l~~lW~~ 80 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAF----RSYYSPIFPPLPQKELSGILTKLWEK 80 (201)
T ss_pred ccccccccccchhHHHHH----HHHHHhhcCCcCHHHHHHHHHHHHhC
Confidence 344566789999999999 45555778899999999999999975
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=97.54 E-value=0.0003 Score=36.94 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 19 MNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 19 ~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
++.|=+|.+..|+.|.+.||++..+.|-.+++.+|++.+.
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAPMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999999997543
No 20
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=96.94 E-value=0.0014 Score=41.53 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 19 MNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 19 ~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
-|||+-|.+++|.+ |.++...|+....+.+|..|+++
T Consensus 83 nnaYLNFLReFRrk----h~~L~p~dlI~~AAraW~rLSe~ 119 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGLSPQDLIQRAARAWCRLSEA 119 (183)
T ss_pred chHHHHHHHHHHHH----ccCCCHHHHHHHHHHHHHhCCHH
Confidence 58999999988875 89999999999999999999864
No 21
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.67 E-value=0.14 Score=30.66 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=39.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 11 KEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 11 ~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+.+..+|=.-||--|...+=+.|+.++|++..+.+-.+|-.+|..-+
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSP 115 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSP 115 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCC
Confidence 33444455578999999999999999999999999999999997643
No 22
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=92.20 E-value=0.059 Score=34.97 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=42.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
...+++|.-.|+-+..+.|.++...+|+..-.++.+++|..|++|+++
T Consensus 141 k~~~~~~~~~~~e~~~~~r~~~~~~~~~~~~~e~~k~~~~~w~el~~s 188 (211)
T COG5648 141 KLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETKIISKAWSELDES 188 (211)
T ss_pred ccCCCCCCchhhhccHHhccccCCCCcchhhhHHhhhhhhhhhhhChh
Confidence 345677888888999999999999999999999999999999999875
No 23
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=84.74 E-value=3.8 Score=23.04 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
|-.|.+|-=+|.+.......+.++.-...+.. .+...|++|+.
T Consensus 4 PE~PKt~qe~Wqq~vi~dYla~~~~dr~K~~k-am~~~W~~me~ 46 (85)
T PF14887_consen 4 PETPKTAQEIWQQSVIGDYLAKFRNDRKKALK-AMEAQWSQMEK 46 (85)
T ss_dssp S----THHHHHHHHHHHHHHHHTTSTHHHHHH-HHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhHhHHHHHH-HHHHHHHHhhh
Confidence 55677888899999999888899888777755 99999999863
No 24
>KOG3223|consensus
Probab=81.20 E-value=1.8 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=38.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
.+.-||=.-||.-|-..+=+.|+.++|++..++.-.+|-.+|..-
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~Ks 206 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKS 206 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhC
Confidence 444456677899999999999999999999999999999999754
No 25
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=80.68 E-value=7.1 Score=21.18 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy14249 20 NAFMVWAKVERKKLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~ 51 (60)
|-|.-|.+.-.+.++...|+++..+|..++.+
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDATPTELKELVEK 40 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 56889999999999999999999999877654
No 26
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=77.00 E-value=1.5 Score=23.93 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC
Q psy14249 37 NPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 37 ~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+++.+..|++.||..|+.|.
T Consensus 2 ~~~~~l~~ia~~lG~dW~~LA 22 (84)
T cd08317 2 RADIRLADISNLLGSDWPQLA 22 (84)
T ss_pred cccchHHHHHHHHhhHHHHHH
Confidence 367789999999999998763
No 27
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=71.29 E-value=5.4 Score=19.08 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=14.6
Q ss_pred HHhhCCCCCHHHHHHHHHHH
Q psy14249 33 LADENPDLHNADLSKMLARI 52 (60)
Q Consensus 33 i~~~~P~~~~~eisk~lg~~ 52 (60)
+..++|.++..||++.+|=-
T Consensus 11 ~l~~~~~~t~~ela~~~~is 30 (48)
T PF13412_consen 11 YLRENPRITQKELAEKLGIS 30 (48)
T ss_dssp HHHHCTTS-HHHHHHHHTS-
T ss_pred HHHHcCCCCHHHHHHHhCCC
Confidence 34669999999999988743
No 28
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=52.97 E-value=5.2 Score=22.25 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHhhcCC
Q psy14249 39 DLHNADLSKMLARILLTCA 57 (60)
Q Consensus 39 ~~~~~eisk~lg~~W~~l~ 57 (60)
++....|+..||..|+.|.
T Consensus 4 ~~~l~~Ia~~LG~dW~~La 22 (84)
T cd08805 4 EMKMAVIREHLGLSWAELA 22 (84)
T ss_pred hhHHHHHHHHhcchHHHHH
Confidence 5667889999999998764
No 29
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=52.55 E-value=7 Score=21.50 Aligned_cols=19 Identities=16% Similarity=-0.025 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHhhcCC
Q psy14249 39 DLHNADLSKMLARILLTCA 57 (60)
Q Consensus 39 ~~~~~eisk~lg~~W~~l~ 57 (60)
++....|+..||..|+.|.
T Consensus 4 ~~~l~~ia~~LG~dWk~LA 22 (84)
T cd08804 4 EERLAVIADHLGFSWTELA 22 (84)
T ss_pred hhHHHHHHHHHhhhHHHHH
Confidence 4556789999999998763
No 30
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=51.86 E-value=9.8 Score=19.76 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhcC
Q psy14249 42 NADLSKMLARILLTC 56 (60)
Q Consensus 42 ~~eisk~lg~~W~~l 56 (60)
...|+..||..|+.|
T Consensus 2 ~~~ia~~lg~~W~~l 16 (79)
T cd01670 2 LDKLAKKLGKDWKKL 16 (79)
T ss_pred HHHHHHHHhhHHHHH
Confidence 457899999999876
No 31
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=51.25 E-value=35 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 21 AFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 21 af~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
+=+.|...+-..+...| ....+-.||..-|+.||+
T Consensus 131 acLVFL~~~f~~F~~~~---deeK~v~Il~KTw~KMS~ 165 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH---DEEKIVDILRKTWRKMSE 165 (185)
T ss_pred HHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHCCH
Confidence 34667777778888777 677888899999999986
No 32
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=50.49 E-value=8.9 Score=21.14 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhhcCC
Q psy14249 41 HNADLSKMLARILLTCA 57 (60)
Q Consensus 41 ~~~eisk~lg~~W~~l~ 57 (60)
+...|+..||+.|+.|.
T Consensus 4 ~l~~ia~~LG~~Wk~la 20 (86)
T cd08779 4 NLLSIAGRLGLDWQAIG 20 (86)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 35679999999998764
No 33
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=49.92 E-value=11 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.9
Q ss_pred CCCCHHHHHH-HHHHHhhcCCCC
Q psy14249 38 PDLHNADLSK-MLARILLTCAPT 59 (60)
Q Consensus 38 P~~~~~eisk-~lg~~W~~l~~~ 59 (60)
|..++..+|+ .||.-|+.+||+
T Consensus 66 p~~Df~~~s~~vLG~~wr~as~e 88 (211)
T PRK15117 66 PYVQVKYAGALVLGRYYKDATPA 88 (211)
T ss_pred ccCCHHHHHHHHhhhhhhhCCHH
Confidence 7788899977 789999999875
No 34
>PF06417 DUF1077: Protein of unknown function (DUF1077); InterPro: IPR009445 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=48.69 E-value=8.1 Score=23.16 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=9.1
Q ss_pred CCChHHHHHHH
Q psy14249 17 RPMNAFMVWAK 27 (60)
Q Consensus 17 RP~naf~lf~~ 27 (60)
-|+|+||+|+.
T Consensus 27 ipMn~FMmyMs 37 (124)
T PF06417_consen 27 IPMNLFMMYMS 37 (124)
T ss_pred hhHHHHHHHHh
Confidence 48999999875
No 35
>KOG1827|consensus
Probab=46.31 E-value=0.5 Score=35.04 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 18 PMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 18 P~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
-..+|++|..+.+..+..++|+..+++++.+.|..|..|+
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v~~~~~~~~vg~~~~~lp 591 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTVGFGEVSIIVGNDWDKLP 591 (629)
T ss_pred CCccccccccccCceeeeeCCCcccceeEEeecCCcccCc
Confidence 4568999999999999999999999999999999999886
No 36
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=43.64 E-value=15 Score=20.22 Aligned_cols=16 Identities=6% Similarity=-0.128 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHhhcC
Q psy14249 41 HNADLSKMLARILLTC 56 (60)
Q Consensus 41 ~~~eisk~lg~~W~~l 56 (60)
.+.-|+..+|..|+.|
T Consensus 4 ~f~~i~~~lG~~Wk~l 19 (86)
T cd08306 4 AFDVICENVGRDWRKL 19 (86)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 3667899999999876
No 37
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=43.22 E-value=13 Score=20.44 Aligned_cols=16 Identities=19% Similarity=-0.016 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhcCC
Q psy14249 42 NADLSKMLARILLTCA 57 (60)
Q Consensus 42 ~~eisk~lg~~W~~l~ 57 (60)
...|+..+|..|+.|.
T Consensus 10 l~~ia~~iG~~Wk~La 25 (86)
T cd08318 10 ITVFANKLGEDWKTLA 25 (86)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 5668999999998763
No 38
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=42.81 E-value=6 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHhhcCC
Q psy14249 39 DLHNADLSKMLARILLTCA 57 (60)
Q Consensus 39 ~~~~~eisk~lg~~W~~l~ 57 (60)
++...+|+..||.-|..|.
T Consensus 4 d~~l~~ia~~LG~dW~~LA 22 (84)
T cd08803 4 DIRMAIVADHLGLSWTELA 22 (84)
T ss_pred HHHHHHHHHHhhccHHHHH
Confidence 4456788999999998764
No 39
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=42.27 E-value=74 Score=22.12 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhh
Q psy14249 21 AFMVWAKVERKKLADENPDLHNADLSKMLARILL 54 (60)
Q Consensus 21 af~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~ 54 (60)
.-.+|...=++.++++||+.+..+|.+.+.+.|.
T Consensus 121 ~k~iYr~~S~~lv~~~hp~ws~~~v~~~A~~~FE 154 (337)
T PF01630_consen 121 SKDIYRNESIELVRQQHPDWSEKEVEKEAKKEFE 154 (337)
T ss_dssp GGHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4467888888899999999999999998887773
No 40
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=39.93 E-value=59 Score=17.13 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCCH--------------------HHHHHHHHHHhhc
Q psy14249 18 PMNAFMVWAKVERKKLADENPDLHN--------------------ADLSKMLARILLT 55 (60)
Q Consensus 18 P~naf~lf~~~~r~~i~~~~P~~~~--------------------~eisk~lg~~W~~ 55 (60)
|..|+=.+..+.-..|...+|+... ..|..+|-++|..
T Consensus 2 p~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe~we~ 59 (65)
T PF06183_consen 2 PAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQEMWED 59 (65)
T ss_dssp -TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHHHHhc
Confidence 5667777888888889999988642 4577788888853
No 41
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=39.87 E-value=16 Score=23.08 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=18.2
Q ss_pred CCCCHHHHHH-HHHHHhhcCCCC
Q psy14249 38 PDLHNADLSK-MLARILLTCAPT 59 (60)
Q Consensus 38 P~~~~~eisk-~lg~~W~~l~~~ 59 (60)
|-.++..+++ .||.-|+.+||+
T Consensus 62 ~~~Df~~mar~vLG~~W~~~s~~ 84 (198)
T TIGR03481 62 EAFDLPAMARLTLGSSWTSLSPE 84 (198)
T ss_pred HhCCHHHHHHHHhhhhhhhCCHH
Confidence 4567889987 789999999875
No 42
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=38.98 E-value=46 Score=18.14 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=18.1
Q ss_pred cccccCCCCCCCCChHHHHHHHH
Q psy14249 6 QQKTAKEQRIRRPMNAFMVWAKV 28 (60)
Q Consensus 6 ~~~~~~~~~pKRP~naf~lf~~~ 28 (60)
+.....++.|--||.-||++.+.
T Consensus 23 ~dr~~K~GfpdepmrE~ml~l~~ 45 (75)
T PF15076_consen 23 QDRPRKPGFPDEPMREYMLHLQA 45 (75)
T ss_pred hcCCCCCCCCcchHHHHHHHHHH
Confidence 34556788888999999999763
No 43
>PF15581 Imm35: Immunity protein 35
Probab=38.64 E-value=22 Score=20.38 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHhhcCCCC
Q psy14249 41 HNADLSKMLARILLTCAPT 59 (60)
Q Consensus 41 ~~~eisk~lg~~W~~l~~~ 59 (60)
+...+..++.+.|+.|+.+
T Consensus 31 ~i~~l~~lIe~eWRGl~~~ 49 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEE 49 (93)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 3566788999999999753
No 44
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=38.46 E-value=23 Score=19.69 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=13.7
Q ss_pred HHHhhCCCCCHHHHHHHH
Q psy14249 32 KLADENPDLHNADLSKML 49 (60)
Q Consensus 32 ~i~~~~P~~~~~eisk~l 49 (60)
.++.+||+++-.||+..+
T Consensus 47 ~lRl~~Pd~SL~EL~~~~ 64 (85)
T PF02650_consen 47 ELRLENPDASLKELGELL 64 (85)
T ss_dssp HHHHH-TTS-HHHHHHTT
T ss_pred HHHHHCccccHHHHHHHH
Confidence 678899999999998765
No 45
>PF06242 DUF1013: Protein of unknown function (DUF1013); InterPro: IPR010421 This is a family of uncharacterised proteins found in Proteobacteria.
Probab=38.39 E-value=26 Score=21.52 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=16.2
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q psy14249 33 LADENPDLHNADLSKMLAR 51 (60)
Q Consensus 33 i~~~~P~~~~~eisk~lg~ 51 (60)
+...||+++-..|+|++|-
T Consensus 77 lvk~hPel~DaQI~kLiGT 95 (140)
T PF06242_consen 77 LVKNHPELSDAQIAKLIGT 95 (140)
T ss_pred HHhcCCcccHHHHHHHhcC
Confidence 4567999999999999873
No 46
>PHA03102 Small T antigen; Reviewed
Probab=36.27 E-value=56 Score=20.12 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCCCC-HHHHHHHHHHHhhcCCC
Q psy14249 26 AKVERKKLADENPDLH-NADLSKMLARILLTCAP 58 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~-~~eisk~lg~~W~~l~~ 58 (60)
.+.+|...+.-||+.. ..+.-+.+.+.|..|+.
T Consensus 25 KkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d 58 (153)
T PHA03102 25 RKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRE 58 (153)
T ss_pred HHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhh
Confidence 4567788888899986 45667888888877754
No 47
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=36.08 E-value=14 Score=20.39 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHhhcC
Q psy14249 41 HNADLSKMLARILLTC 56 (60)
Q Consensus 41 ~~~eisk~lg~~W~~l 56 (60)
+...|+..||..|+.|
T Consensus 4 ~L~~la~~LG~~W~~L 19 (83)
T cd08319 4 ELNQLAQRLGPEWEQV 19 (83)
T ss_pred HHHHHHHHHhhhHHHH
Confidence 3467899999999876
No 48
>cd00243 Lysin-Sp18 Sp18 and Lysin from Archaegastropoda (marine mollusks of the families Halotidae and Trochidae) sperm. Both proteins play an important role in fertilization: sp18 mediates fusion between sperm and egg cell membrane, lysin dissolves the vitelline envelope surrounding the egg; they are believed to be a product of gene duplication and subsequent divergence.
Probab=35.09 E-value=54 Score=19.64 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy14249 20 NAFMVWAKVERKKLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~ 51 (60)
+.||+|++..-.++...--..+.+-+.+++|.
T Consensus 53 ~ny~~w~~k~I~~lgR~p~~~dy~~~Gr~iGr 84 (122)
T cd00243 53 QNYMLWSKKIIRKLGRPPNVKDYTRLGREIGR 84 (122)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHhh
Confidence 34677765433332221122335556666664
No 49
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.88 E-value=1e+02 Score=20.39 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=22.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|+++.
T Consensus 64 ~~~NL~~afPe~s~~e~~~i~~~~~~~~g 92 (308)
T PRK06553 64 ALDNLRAAFPEKSEAEIEAIALGMWDNLG 92 (308)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34456667899999999998888887763
No 50
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.58 E-value=91 Score=17.69 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 28 VERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 28 ~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
.....|...+ +.+..+|.++.++.|..-++
T Consensus 51 ~~Y~~iA~~n-g~t~~~V~~~~a~k~~~~a~ 80 (95)
T PF07027_consen 51 ALYQEIAKKN-GITVEQVAATAAQKWIERAP 80 (95)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhCC
Confidence 3344667777 88899999999999976554
No 51
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=34.53 E-value=81 Score=20.76 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++.+.|+++.
T Consensus 57 ~~~NL~~~fP~~s~~e~~~i~~~~~~~~g 85 (305)
T TIGR02208 57 ARINLSACFPEKSEAERETIIDNNFATFV 85 (305)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34466677899999999999999998763
No 52
>KOG3318|consensus
Probab=34.28 E-value=20 Score=22.84 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=9.3
Q ss_pred CCChHHHHHHH
Q psy14249 17 RPMNAFMVWAK 27 (60)
Q Consensus 17 RP~naf~lf~~ 27 (60)
-|||.||.|+.
T Consensus 71 iPMN~FmmYMa 81 (178)
T KOG3318|consen 71 IPMNLFMMYMA 81 (178)
T ss_pred ccHHHHHHHHc
Confidence 48999999975
No 53
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=33.02 E-value=65 Score=15.53 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHhhcCCC
Q psy14249 26 AKVERKKLADENPDLHN------ADLSKMLARILLTCAP 58 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~~------~eisk~lg~~W~~l~~ 58 (60)
.+.++..++.-||+... .+....|.+.|..|..
T Consensus 19 k~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 19 KKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 34556667777898865 3677778888877754
No 54
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=31.55 E-value=39 Score=16.07 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCC-CHHHHHHHHHHHhhc
Q psy14249 26 AKVERKKLADENPDL-HNADLSKMLARILLT 55 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~-~~~eisk~lg~~W~~ 55 (60)
.......|....-+. +..+|++.+|--|..
T Consensus 13 T~~~~~~i~~~~~~~~s~~~vA~~~~vs~~T 43 (52)
T PF13542_consen 13 TKRLEQYILKLLRESRSFKDVARELGVSWST 43 (52)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHCCCHHH
Confidence 344445555555555 899999998877754
No 55
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.49 E-value=47 Score=19.03 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=15.7
Q ss_pred HHHHhhCCCCCHHHHHHHHH
Q psy14249 31 KKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 31 ~~i~~~~P~~~~~eisk~lg 50 (60)
..+.+++|+++..|++..+|
T Consensus 63 ~~~v~~~pd~tl~Ela~~l~ 82 (119)
T PF01710_consen 63 KALVEENPDATLRELAERLG 82 (119)
T ss_pred HHHHHHCCCcCHHHHHHHcC
Confidence 34567799999999988664
No 56
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.11 E-value=1e+02 Score=20.38 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=23.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++.+.|+++.
T Consensus 47 ~~~NL~~~fP~~s~~e~~~i~~~~~~~~g 75 (305)
T PRK08734 47 TRRNLELAYPELSPQQRAQLHAQILRSTA 75 (305)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34466677899999999999999998763
No 57
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.65 E-value=1e+02 Score=17.00 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~ 51 (60)
.+|++|.-++ ..+++++|.++...|-+.|..
T Consensus 14 ~~~~sa~ei~-----~~l~~~~~~i~~~TVYR~L~~ 44 (116)
T cd07153 14 DGHLTAEEIY-----ERLRKKGPSISLATVYRTLEL 44 (116)
T ss_pred CCCCCHHHHH-----HHHHhcCCCCCHHHHHHHHHH
Confidence 4678887777 557777888888888777643
No 58
>smart00351 PAX Paired Box domain.
Probab=30.64 E-value=81 Score=18.27 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.0
Q ss_pred HHHhhCCCCCHHHHHHHHHH
Q psy14249 32 KLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 32 ~i~~~~P~~~~~eisk~lg~ 51 (60)
.+..++|+++..||...|.+
T Consensus 86 ~~~~~~p~~t~~el~~~L~~ 105 (125)
T smart00351 86 DYKQENPGIFAWEIRDRLLS 105 (125)
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 35678999999999998875
No 59
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.36 E-value=1.1e+02 Score=19.89 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+..|...+|+++..|+-+++-+.|+++.
T Consensus 47 ~~NL~~~fP~~s~~e~~~i~~~~~~~~~ 74 (295)
T PRK05645 47 RINLSKCFPELSPAELEKLVGQSLMDIG 74 (295)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4456667899999999999999998763
No 60
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.26 E-value=1.1e+02 Score=20.00 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|+++.
T Consensus 46 ~~~NL~~~fPe~s~~e~~~i~r~~~~~~~ 74 (293)
T PRK06946 46 VHTNLKLCFPDWSDARREELARRHFRHVI 74 (293)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34456666899999999999999988763
No 61
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=28.91 E-value=1e+02 Score=16.63 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~ 51 (60)
-|..|+-+-|.-. -..+.+.||+++...|...|-.
T Consensus 22 ~RSi~~QiE~War-iGr~~E~np~l~~~~I~~~l~~ 56 (72)
T PF11903_consen 22 SRSINGQIEHWAR-IGRAAEDNPDLSYSFIEEMLLA 56 (72)
T ss_pred cCCHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHH
Confidence 3566666666322 2346789999999999887743
No 62
>KOG1224|consensus
Probab=28.83 E-value=24 Score=26.62 Aligned_cols=17 Identities=41% Similarity=0.790 Sum_probs=14.0
Q ss_pred CCCCChHHHHHHHHHHH
Q psy14249 15 IRRPMNAFMVWAKVERK 31 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~ 31 (60)
-.-|++|||-||.++|.
T Consensus 750 ~~s~l~afm~~~~~~r~ 766 (767)
T KOG1224|consen 750 TRSPLNAFMEFCSDQRR 766 (767)
T ss_pred hcCcHHHHHHHhhhhcc
Confidence 34589999999998875
No 63
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.74 E-value=1.1e+02 Score=20.11 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=23.4
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|+++.
T Consensus 41 ~~~NL~~~fPe~s~~e~~~i~~~~~~~~~ 69 (298)
T PRK07920 41 LRRNLARVVPDAPAAVLDALVRAAMRSYA 69 (298)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34566677899999999999999998763
No 64
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=28.02 E-value=1.2e+02 Score=20.10 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+..|...+|+++..|+-+++-+.|.++.
T Consensus 67 ~~NL~~afPe~s~~e~~~i~~~~~~n~~ 94 (314)
T PRK08943 67 RINLSLCFPEKSEAEREAIIDEMFATAP 94 (314)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4456666899999999999999998763
No 65
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=27.93 E-value=32 Score=18.95 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHhhcCC
Q psy14249 41 HNADLSKMLARILLTCA 57 (60)
Q Consensus 41 ~~~eisk~lg~~W~~l~ 57 (60)
+...|+..+|..|+.|.
T Consensus 4 ~l~~l~~~lG~~Wk~la 20 (86)
T cd08777 4 HLDLLRENLGKKWKRCA 20 (86)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567888999998763
No 66
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=27.79 E-value=90 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14249 20 NAFMVWAKVERKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~~eisk~lg 50 (60)
.||.+|.. .+-++...||+..||
T Consensus 11 kA~e~y~~--------~~g~i~lkdIA~~Lg 33 (60)
T PF10668_consen 11 KAFEIYKE--------SNGKIKLKDIAEKLG 33 (60)
T ss_pred HHHHHHHH--------hCCCccHHHHHHHHC
Confidence 47888843 234556666666655
No 67
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=27.51 E-value=51 Score=18.33 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy14249 15 IRRPMNAFMVWAKVER 30 (60)
Q Consensus 15 pKRP~naf~lf~~~~r 30 (60)
+.|+..||..|+..-+
T Consensus 60 ~~rG~~Af~~F~~aL~ 75 (86)
T cd08785 60 ATRGKRGYVAFLESLE 75 (86)
T ss_pred HhcCcchHHHHHHHHH
Confidence 6788999999986553
No 68
>TIGR00534 OpcA opcA protein. The opcA gene is found immediately downstream of zwf, the glucose-6-phosphate dehydrogenase (G6PDH) gene, in a number of species, including Mycobacterium tuberculosis, Streptomyces coelicolor, Nostoc punctiforme, and Synechococcus sp. PCC 7942. In the latter, disruption of opcA was shown to block assembly of G6PDH into active oligomeric forms.
Probab=27.14 E-value=67 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=17.7
Q ss_pred hCCCCCHHHHHHHHHHHhhcC
Q psy14249 36 ENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 36 ~~P~~~~~eisk~lg~~W~~l 56 (60)
.-|+.+..+|++.|.+.|..-
T Consensus 4 ~l~dtt~~~I~~~L~~l~~~~ 24 (311)
T TIGR00534 4 DPTDITLNEINKELNQLWQSI 24 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 347889999999999999753
No 69
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.59 E-value=1.3e+02 Score=19.82 Aligned_cols=28 Identities=14% Similarity=0.060 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+..|...+|+++..|+-+++-+.|+++.
T Consensus 62 ~~NL~~~fP~~s~~e~~~i~~~~~~~~~ 89 (306)
T PRK08733 62 EVNLKLCFPEQDDAWRARLLRDSFDALG 89 (306)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4456666899999999999999888653
No 70
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.19 E-value=62 Score=16.26 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhCCCC
Q psy14249 26 AKVERKKLADENPDL 40 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~ 40 (60)
.+..|..+..+||.+
T Consensus 31 Le~KR~~Lv~qHP~i 45 (46)
T PF08946_consen 31 LEAKRQRLVDQHPRI 45 (46)
T ss_dssp HHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788999999976
No 71
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=26.16 E-value=29 Score=17.71 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhC--CCCCHHHHHHHHH
Q psy14249 25 WAKVERKKLADEN--PDLHNADLSKMLA 50 (60)
Q Consensus 25 f~~~~r~~i~~~~--P~~~~~eisk~lg 50 (60)
|..+.+..+..+. ++.+..+|++.+|
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~g 34 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYG 34 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccc
Confidence 4555555555544 6677777776654
No 72
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=26.15 E-value=80 Score=14.46 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcC
Q psy14249 44 DLSKMLARILLTC 56 (60)
Q Consensus 44 eisk~lg~~W~~l 56 (60)
|-+.+|.+.|+.|
T Consensus 13 e~t~iLN~eWk~l 25 (30)
T PF11616_consen 13 ERTDILNEEWKKL 25 (30)
T ss_dssp HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh
Confidence 4577899999876
No 73
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.95 E-value=47 Score=18.38 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHHH
Q psy14249 15 IRRPMNAFMVWAKVERK 31 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~ 31 (60)
|+|-++||-.||..-+.
T Consensus 61 ~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 61 PKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHhChhHHHHHHHHHHh
Confidence 67788999999876653
No 74
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=25.20 E-value=90 Score=14.64 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCC
Q psy14249 26 AKVERKKLADENPDLHN-----ADLSKMLARILLTCA 57 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~W~~l~ 57 (60)
.+.+|..++.-||+... .+....|.+.|..|+
T Consensus 18 k~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 18 KKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 35567777888898774 456677777777664
No 75
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.18 E-value=1.5e+02 Score=19.57 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|+++.
T Consensus 61 ~~~NL~~~fPe~s~~e~~~i~~~~~~~~g 89 (309)
T PRK06860 61 ARRNLELCFPEMSEQEREAIVVKNFESVG 89 (309)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677899999999999999988753
No 76
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=25.14 E-value=1e+02 Score=15.34 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=14.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHH
Q psy14249 29 ERKKLADENPDLHNADLSKML 49 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~l 49 (60)
-.+.|.+++|.++..+|--.|
T Consensus 33 s~eeI~~~yp~Lt~~~i~aAl 53 (56)
T PF04255_consen 33 SPEEIAEDYPSLTLEDIRAAL 53 (56)
T ss_dssp -HHHHHHHSTT--HHHHHHHH
T ss_pred CHHHHHHHCCCCCHHHHHHHH
Confidence 345889999999998886655
No 77
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=24.92 E-value=33 Score=18.11 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=10.3
Q ss_pred CChHHHHHHHHHH
Q psy14249 18 PMNAFMVWAKVER 30 (60)
Q Consensus 18 P~naf~lf~~~~r 30 (60)
|.-||--||..++
T Consensus 41 P~~aF~~FC~~n~ 53 (59)
T PF06099_consen 41 PRAAFEEFCAANR 53 (59)
T ss_pred CHHHHHHHHHHCc
Confidence 6678999998765
No 78
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=23.92 E-value=54 Score=18.70 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhcC
Q psy14249 42 NADLSKMLARILLTC 56 (60)
Q Consensus 42 ~~eisk~lg~~W~~l 56 (60)
+..++..+|+.|+.+
T Consensus 5 ~q~~~~nvGr~WK~l 19 (90)
T cd08780 5 QQHFAKSVGKKWKPV 19 (90)
T ss_pred HHHHHHHHhHHHHHH
Confidence 456788889999765
No 79
>PF15269 zf-C2H2_7: Zinc-finger
Probab=23.65 E-value=59 Score=16.51 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=11.8
Q ss_pred cccccCCCCCCCCChH
Q psy14249 6 QQKTAKEQRIRRPMNA 21 (60)
Q Consensus 6 ~~~~~~~~~pKRP~na 21 (60)
+.+.+.+..++||.--
T Consensus 2 ~rkpkkphyiprp~gk 17 (54)
T PF15269_consen 2 ERKPKKPHYIPRPPGK 17 (54)
T ss_pred CCCCCCCCcCCCCCCC
Confidence 4567888889998644
No 80
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=23.61 E-value=1.6e+02 Score=19.22 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=22.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
+..|...+|+++..|+-+++-+.|.++
T Consensus 56 ~~NL~~~fP~~s~~e~~~i~~~~~~~~ 82 (303)
T TIGR02207 56 RRNLELCFPHMSDAERERLLRENFEST 82 (303)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 445666689999999999999988765
No 81
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.45 E-value=1.6e+02 Score=19.38 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+..|...+|+++..|+-+++-+.|+++.
T Consensus 59 ~~NL~~~fP~~s~~e~~~i~~~~~~~~~ 86 (310)
T PRK05646 59 ARNLELCFPEKSAAERERLLKENFASTG 86 (310)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4456666899999999999999988763
No 82
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=23.06 E-value=39 Score=21.25 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 22 FMVWAKVERKKLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 22 f~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
|+-=..+-|..++.+||.....+|==..-..|+.|
T Consensus 117 F~GtY~eLrKHar~~HP~~rP~~vDP~rq~~W~~l 151 (162)
T PF07800_consen 117 FSGTYSELRKHARSEHPSARPSEVDPQRQRDWERL 151 (162)
T ss_pred cccCHHHHHHHHHhhCCCCCCccCCHHHHHHHHHH
Confidence 55555778889999999999999988888889876
No 83
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=22.99 E-value=1.7e+02 Score=19.22 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|.++.
T Consensus 59 ~~~NL~~~fP~~s~~e~~~i~~~~~~~~g 87 (305)
T PRK08025 59 ARKNLELCFPQMSAEEREKMIAENFRSLG 87 (305)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34456666899999999999998887753
No 84
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=22.84 E-value=96 Score=16.00 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=8.6
Q ss_pred CCHHHHHHHHH
Q psy14249 40 LHNADLSKMLA 50 (60)
Q Consensus 40 ~~~~eisk~lg 50 (60)
++..||++.||
T Consensus 23 ~ta~eLa~~lg 33 (68)
T smart00550 23 STALQLAKNLG 33 (68)
T ss_pred cCHHHHHHHHC
Confidence 88888887765
No 85
>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C.
Probab=22.78 E-value=52 Score=18.25 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=6.8
Q ss_pred CCCCCHHHHHHHHH
Q psy14249 37 NPDLHNADLSKMLA 50 (60)
Q Consensus 37 ~P~~~~~eisk~lg 50 (60)
.|-+++.||+++|-
T Consensus 7 ~~~MtN~Dl~RiIn 20 (80)
T PF14374_consen 7 RPKMTNADLSRIIN 20 (80)
T ss_dssp --S-S---HHHHHH
T ss_pred cchhccccHHHHhc
Confidence 36788999999985
No 86
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=22.51 E-value=1.1e+02 Score=14.53 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=10.9
Q ss_pred HhhCCCCCHHHHHHHHH
Q psy14249 34 ADENPDLHNADLSKMLA 50 (60)
Q Consensus 34 ~~~~P~~~~~eisk~lg 50 (60)
..+++..+..+|+..+|
T Consensus 12 Lq~d~r~s~~~la~~lg 28 (42)
T PF13404_consen 12 LQEDGRRSYAELAEELG 28 (42)
T ss_dssp HHH-TTS-HHHHHHHHT
T ss_pred HHHcCCccHHHHHHHHC
Confidence 34567888888888775
No 87
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.41 E-value=64 Score=17.71 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.6
Q ss_pred CCCCChHHHHHHHHHHH
Q psy14249 15 IRRPMNAFMVWAKVERK 31 (60)
Q Consensus 15 pKRP~naf~lf~~~~r~ 31 (60)
|.|-.+||-.||..-++
T Consensus 57 ~~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 57 ETRGKQAFPAFLSALRE 73 (84)
T ss_pred HhcCHHHHHHHHHHHHh
Confidence 66788999999876654
No 88
>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge
Probab=22.38 E-value=1.7e+02 Score=18.20 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=27.6
Q ss_pred CCCCCCCChHH-------------------HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhc
Q psy14249 12 EQRIRRPMNAF-------------------MVWAKVERKKLADENPDLHNADLSKMLARILLT 55 (60)
Q Consensus 12 ~~~pKRP~naf-------------------~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~ 55 (60)
...||||++.| .+|.--.+.+-...+.+++..|-...|-.-|-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~~VewaK~ip~F~~L~~~DQi~LLk~~w~e 70 (206)
T cd06950 8 QPTPKRPPFPYGTISSYEVSPESVCESAARLLFMAVKWAKSIPAFSTLPFRDQLILLEESWSE 70 (206)
T ss_pred CCCCCCCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHHHHHHHHH
Confidence 34678887775 334444444444556677777777777777754
No 89
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.90 E-value=1.5e+02 Score=15.91 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhc
Q psy14249 21 AFMVWAKVERKKLADENPDLHNADLSKMLARILLT 55 (60)
Q Consensus 21 af~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~ 55 (60)
.|-+||+..|--|++ +.+..+|-+-+ -|..
T Consensus 9 ~y~~YckALr~Lv~~---G~~~~~i~rTv--CW~r 38 (64)
T PF11334_consen 9 GYPLYCKALRRLVAD---GRSEEEIRRTV--CWDR 38 (64)
T ss_pred CchHHHHHHHHHHHc---CCCHHHHHHHH--HHHH
Confidence 488999999998874 66677776644 4643
No 90
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=1.8e+02 Score=19.79 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=22.9
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
+..+..-+|+.+..|.-+++.+.|.++
T Consensus 59 ~~NL~~~FPe~se~ere~i~~~~~~~~ 85 (308)
T COG1560 59 RRNLALCFPEKSEAEREKIVKESFASM 85 (308)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 446677789999999999999999865
No 91
>KOG0980|consensus
Probab=21.30 E-value=1.7e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=28.1
Q ss_pred hHHHH--HHHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCCCC
Q psy14249 20 NAFMV--WAKVERKKLADENPDLHN-----ADLSKMLARILLTCAPTY 60 (60)
Q Consensus 20 naf~l--f~~~~r~~i~~~~P~~~~-----~eisk~lg~~W~~l~~~~ 60 (60)
+.+.. ||--....++.-||..-. ..--+.+|++|+.++..|
T Consensus 55 ~~VltwKfchllHKvLreGHpsal~es~r~r~~i~~l~r~w~~ls~~Y 102 (980)
T KOG0980|consen 55 HEVLTWKFCHLLHKVLREGHPSALEESQRYKKWITQLGRMWGHLSDGY 102 (980)
T ss_pred chHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhccccccc
Confidence 34444 566777778888887653 333457999999998665
No 92
>PRK05906 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.96 E-value=1.9e+02 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=22.6
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 30 RKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
+..|...+|+++..|+-+++-+.|+++.
T Consensus 59 ~~NL~laFPekS~~Er~~Iar~~y~nlg 86 (454)
T PRK05906 59 LTNLALAFPEKSFAERYQIARQSVQHVI 86 (454)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3455666899999999999999998763
No 93
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=20.84 E-value=2.4e+02 Score=18.43 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=19.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHH
Q psy14249 29 ERKKLADENPDLHNADLSKMLARI 52 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~ 52 (60)
.+..++..||+.+..+|-+.+|+.
T Consensus 175 aWr~f~~~~~~as~e~i~~hageL 198 (211)
T TIGR02269 175 AWRDFARRYPGASPEEIWRHAGEL 198 (211)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345577789999999999988875
No 94
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.70 E-value=2e+02 Score=18.72 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhhcCC
Q psy14249 29 ERKKLADENPDLHNADLSKMLARILLTCA 57 (60)
Q Consensus 29 ~r~~i~~~~P~~~~~eisk~lg~~W~~l~ 57 (60)
.+..|...+|+++..|+-+++-+.|.++.
T Consensus 41 ~~~NL~~~fp~~s~~e~~~i~~~~~~~~~ 69 (289)
T PRK08706 41 GEINLAKCFPEWDEEKRKTVLKQHFKHMA 69 (289)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677899999999999888887653
No 95
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=20.69 E-value=1.7e+02 Score=16.21 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCC----------------------HHHHHHHHHHHhhc
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLH----------------------NADLSKMLARILLT 55 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~----------------------~~eisk~lg~~W~~ 55 (60)
+-|..|+-....+.-..|...+|++. -..|..+|-++|-.
T Consensus 12 ~lp~ga~~AL~~EL~kRl~~~fPd~~~~v~Vr~~s~n~lsv~g~~k~dK~~i~eiLqE~we~ 73 (81)
T PRK10597 12 PLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKEDKDRISEILQETWES 73 (81)
T ss_pred CCChhHHHHHHHHHHHHHHhhCCCCCccEEEeecCCCceEecCCCcchHHHHHHHHHHHHhC
Confidence 45678888899999999999999874 15688888888864
No 96
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=20.61 E-value=57 Score=22.30 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=17.0
Q ss_pred HHHhh--CCCCCHHHHHHHHHHHhhcC
Q psy14249 32 KLADE--NPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 32 ~i~~~--~P~~~~~eisk~lg~~W~~l 56 (60)
+|+.+ +|+ -.|+..-|..||+.|
T Consensus 161 kLRDeEL~PQ--L~eLi~Gl~~MWk~M 185 (312)
T PF04782_consen 161 KLRDEELYPQ--LVELIQGLMRMWKSM 185 (312)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 44444 355 678999999999987
No 97
>PRK05439 pantothenate kinase; Provisional
Probab=20.48 E-value=56 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.501 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHHhhCC-CCCHHHHHHH
Q psy14249 18 PMNAFMVWAKVERKKLADENP-DLHNADLSKM 48 (60)
Q Consensus 18 P~naf~lf~~~~r~~i~~~~P-~~~~~eisk~ 48 (60)
..+.|..|.++.+..++...| .++..||.++
T Consensus 6 ~~~~~~~~~r~~w~~l~~~~~~~l~~~~~~~l 37 (311)
T PRK05439 6 EFSPYLEFSREQWAALRDSTPLTLTEEELERL 37 (311)
T ss_pred CCCCceeECHHHHHHHHhcCCCCCCHHHHHHh
Confidence 467899999999999987765 5666666654
Done!