Query psy14249
Match_columns 60
No_of_seqs 117 out of 1081
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:10:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e6o_A HMG box-containing prot 99.9 4.2E-22 1.4E-26 110.8 5.1 53 7-59 10-62 (87)
2 1wgf_A Upstream binding factor 99.9 4.9E-22 1.7E-26 111.2 5.2 54 6-59 12-65 (90)
3 1k99_A Upstream binding factor 99.9 8E-22 2.8E-26 112.2 6.1 53 7-59 3-55 (99)
4 2d7l_A WD repeat and HMG-box D 99.9 9.8E-22 3.4E-26 108.9 5.6 50 10-59 1-51 (81)
5 2crj_A SWI/SNF-related matrix- 99.9 2.2E-21 7.4E-26 108.8 7.0 51 9-59 2-52 (92)
6 1hme_A High mobility group pro 99.9 1.2E-21 4.1E-26 106.3 5.7 51 9-59 1-51 (77)
7 1hry_A Human SRY; DNA, DNA-bin 99.8 6.2E-22 2.1E-26 107.2 3.9 49 11-59 1-49 (76)
8 3nm9_A HMG-D, high mobility gr 99.8 2.7E-21 9.1E-26 104.4 6.4 47 12-58 1-47 (73)
9 2co9_A Thymus high mobility gr 99.8 1.6E-21 5.3E-26 111.3 5.5 54 6-59 9-62 (102)
10 2eqz_A High mobility group pro 99.8 2.6E-21 9E-26 107.3 6.1 57 3-59 4-62 (86)
11 1i11_A Transcription factor SO 99.8 4.5E-21 1.5E-25 105.1 6.1 48 12-59 2-49 (81)
12 1j46_A SRY, sex-determining re 99.8 4.2E-21 1.4E-25 106.2 5.4 48 12-59 2-49 (85)
13 3u2b_C Transcription factor SO 99.8 3.5E-21 1.2E-25 104.8 4.7 47 13-59 1-47 (79)
14 4a3n_A Transcription factor SO 99.8 3E-21 1E-25 103.0 4.2 47 13-59 1-47 (71)
15 3f27_D Transcription factor SO 99.8 4E-21 1.4E-25 105.5 4.7 49 11-59 3-51 (83)
16 1wz6_A HMG-box transcription f 99.8 4.8E-21 1.6E-25 105.2 4.6 51 9-59 2-52 (82)
17 1wxl_A Single-strand recogniti 99.8 1.9E-20 6.5E-25 101.0 6.5 45 12-56 1-45 (73)
18 2cs1_A PMS1 protein homolog 1; 99.8 1.1E-20 3.7E-25 106.0 5.6 51 9-59 2-52 (92)
19 4euw_A Transcription factor SO 99.8 1.1E-20 3.7E-25 108.6 5.3 54 6-59 21-74 (106)
20 2lef_A LEF-1 HMG, protein (lym 99.8 1.3E-20 4.5E-25 104.3 5.4 47 13-59 1-47 (86)
21 1gt0_D Transcription factor SO 99.8 1.2E-20 4.2E-25 103.0 5.0 47 13-59 1-47 (80)
22 1ckt_A High mobility group 1 p 99.8 4.5E-20 1.5E-24 98.7 6.0 46 14-59 1-48 (71)
23 1aab_A High mobility group pro 99.8 1.1E-20 3.6E-25 104.0 3.5 51 9-59 2-54 (83)
24 1cg7_A Protein (NON histone pr 99.8 2.8E-21 9.5E-26 108.7 0.7 53 7-59 13-65 (93)
25 2lhj_A High mobility group pro 99.8 6.1E-21 2.1E-25 107.8 1.7 53 7-59 15-69 (97)
26 2gzk_A Sex-determining region 99.8 6.4E-19 2.2E-23 106.1 5.9 53 7-59 81-133 (159)
27 2yrq_A High mobility group pro 99.8 1.3E-18 4.4E-23 106.1 6.2 52 8-59 95-146 (173)
28 2yrq_A High mobility group pro 99.7 2.8E-18 9.5E-23 104.6 5.7 55 5-59 6-62 (173)
29 3fgh_A Transcription factor A, 99.7 4.7E-18 1.6E-22 90.1 2.9 43 13-59 1-43 (67)
30 1v64_A Nucleolar transcription 99.7 9.9E-18 3.4E-22 96.7 4.0 51 5-59 7-58 (108)
31 2cto_A Novel protein; high mob 99.7 4.7E-18 1.6E-22 96.3 1.7 50 8-59 4-56 (93)
32 2yuk_A Myeloid/lymphoid or mix 99.7 3.4E-19 1.2E-23 100.6 -3.0 49 7-59 15-65 (90)
33 1l8y_A Upstream binding factor 99.7 5.9E-17 2E-21 91.7 5.7 46 13-59 3-48 (91)
34 2gzk_A Sex-determining region 99.7 4.9E-17 1.7E-21 97.8 5.2 48 12-59 2-49 (159)
35 3tq6_A Transcription factor A, 99.7 2.5E-17 8.6E-22 103.9 3.8 50 10-59 5-54 (214)
36 3tmm_A Transcription factor A, 99.7 2.6E-17 8.8E-22 105.2 3.3 51 9-59 36-86 (238)
37 1v63_A Nucleolar transcription 99.6 2.2E-16 7.4E-21 90.1 4.5 49 9-59 3-51 (101)
38 3tmm_A Transcription factor A, 99.5 1.8E-15 6.1E-20 96.6 0.9 47 9-59 141-187 (238)
39 3tq6_A Transcription factor A, 99.5 9.7E-16 3.3E-20 96.6 -0.6 46 10-59 110-155 (214)
40 3mhp_C TIC62_peptide, ferredox 42.1 3.6 0.00012 17.7 -0.5 11 15-25 2-12 (26)
41 1qbj_A Protein (double-strande 37.0 30 0.001 18.0 2.5 29 22-50 4-38 (81)
42 1fad_A Protein (FADD protein); 35.3 17 0.00059 19.2 1.4 15 42-56 17-31 (99)
43 1wjt_A Transcription elongatio 32.1 34 0.0012 18.8 2.3 25 32-56 61-85 (103)
44 2fe3_A Peroxide operon regulat 31.9 70 0.0024 17.8 4.5 32 16-52 35-66 (145)
45 2atm_A Hyaluronoglucosaminidas 30.9 1E+02 0.0035 20.5 4.8 33 21-53 121-153 (331)
46 1mzb_A Ferric uptake regulatio 29.4 75 0.0026 17.5 4.4 31 17-52 33-63 (136)
47 2p7v_B Sigma-70, RNA polymeras 29.0 53 0.0018 15.6 3.1 22 29-50 10-36 (68)
48 1fcq_A Hyaluronoglucosaminidas 27.5 1.2E+02 0.0043 20.2 4.8 34 20-53 124-157 (350)
49 2w57_A Ferric uptake regulatio 27.0 90 0.0031 17.5 4.1 31 17-52 32-62 (150)
50 3lyn_A Sperm lysin; abalone ly 24.6 26 0.00089 20.6 0.9 29 20-51 63-94 (136)
51 3ygs_P Procaspase 9; apoptosis 24.3 47 0.0016 17.6 2.0 16 15-30 64-79 (97)
52 2dn9_A DNAJ homolog subfamily 24.3 68 0.0023 15.9 2.5 32 26-57 25-61 (79)
53 2ph0_A Uncharacterized protein 23.7 20 0.00068 21.5 0.4 21 30-50 5-25 (174)
54 2pe4_A Hyaluronidase-1; hyalur 23.6 1.5E+02 0.0052 20.3 4.7 33 21-53 124-156 (424)
55 2j0p_A HEMS, hemin transport p 23.5 60 0.0021 21.5 2.7 23 28-50 7-29 (345)
56 2hq2_A Putative heme/hemoglobi 23.3 70 0.0024 21.4 2.9 23 28-50 17-39 (354)
57 2och_A Hypothetical protein DN 23.3 77 0.0026 15.5 2.9 33 26-58 26-60 (73)
58 2lkw_A Membrane fusion protein 22.7 28 0.00097 14.5 0.6 11 13-23 9-19 (26)
59 1qgp_A Protein (double strande 22.3 50 0.0017 16.7 1.7 17 34-50 23-42 (77)
60 1ku3_A Sigma factor SIGA; heli 21.9 79 0.0027 15.2 2.4 13 38-50 29-41 (73)
61 2o37_A Protein SIS1; HSP40, J- 21.3 97 0.0033 15.9 3.3 33 26-58 26-60 (92)
62 3mwm_A ZUR, putative metal upt 21.1 1.2E+02 0.004 16.8 4.2 32 16-52 27-58 (139)
63 2yqf_A Ankyrin-1; death domain 20.9 19 0.00064 19.6 -0.2 15 42-56 21-35 (111)
64 1wxp_A THO complex subunit 1; 20.7 20 0.0007 19.5 -0.0 16 42-57 21-36 (110)
65 2xig_A Ferric uptake regulatio 20.5 1.3E+02 0.0043 16.9 4.6 30 17-51 41-70 (150)
66 3lsg_A Two-component response 20.3 1E+02 0.0034 15.7 2.9 31 20-50 49-79 (103)
67 2o03_A Probable zinc uptake re 20.2 1.2E+02 0.004 16.5 4.3 33 16-53 24-56 (131)
68 2ctw_A DNAJ homolog subfamily 20.2 1.1E+02 0.0039 16.3 3.3 33 26-58 35-72 (109)
69 3mkl_A HTH-type transcriptiona 20.2 1.1E+02 0.0037 16.1 3.4 32 19-50 51-82 (120)
No 1
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-22 Score=110.79 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=50.0
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.+++++||||+||||||++++|..|+.++|++++.||+++||++|++|+++
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~e 62 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNE 62 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHH
Confidence 46679999999999999999999999999999999999999999999999864
No 2
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=4.9e-22 Score=111.18 Aligned_cols=54 Identities=22% Similarity=0.561 Sum_probs=50.4
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 6 ~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..+.+++++||||+||||||++++|..|+.+||++++.||+++||++|++|+++
T Consensus 12 ~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~e 65 (90)
T 1wgf_A 12 EGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 65 (90)
T ss_dssp CCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 345679999999999999999999999999999999999999999999999864
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=8e-22 Score=112.20 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=50.6
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+|||||||++.|..|+.++|++++.|||++||++|++|+++
T Consensus 3 kk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~e 55 (99)
T 1k99_A 3 KLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEK 55 (99)
T ss_dssp CCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCST
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 46689999999999999999999999999999999999999999999999986
No 4
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.8e-22 Score=108.88 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=47.0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHhhcCCCC
Q psy14249 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLH-NADLSKMLARILLTCAPT 59 (60)
Q Consensus 10 ~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~-~~eisk~lg~~W~~l~~~ 59 (60)
++++.||||+||||+|++++|..|+.+||+++ +.|||++||++|++|+++
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~e 51 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTE 51 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHH
Confidence 36789999999999999999999999999998 999999999999999863
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.85 E-value=2.2e-21 Score=108.83 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=49.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+++++||||+||||+|++++|..|+.+||++++.|||++||++|++|+++
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~e 52 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPA 52 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHH
Confidence 468999999999999999999999999999999999999999999999975
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.85 E-value=1.2e-21 Score=106.32 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=48.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.++++.||||+||||+|++++|..|+.+||++++.|||++||++|++|+++
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 51 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 51 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGG
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 368999999999999999999999999999999999999999999999875
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.85 E-value=6.2e-22 Score=107.24 Aligned_cols=49 Identities=39% Similarity=0.716 Sum_probs=45.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 11 KEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 11 ~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++++||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 49 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEA 49 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHH
Confidence 5789999999999999999999999999999999999999999999864
No 8
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.85 E-value=2.7e-21 Score=104.39 Aligned_cols=47 Identities=19% Similarity=0.486 Sum_probs=44.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~ 58 (60)
.+.||||+||||+||+++|..|+.+||++++.||+++||++|++|++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 36899999999999999999999999999999999999999999975
No 9
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=1.6e-21 Score=111.32 Aligned_cols=54 Identities=15% Similarity=0.336 Sum_probs=50.3
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 6 ~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..+.++++.||||+||||||++++|..|+.+||++++.||+++||++|++|+++
T Consensus 9 kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~e 62 (102)
T 2co9_A 9 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEE 62 (102)
T ss_dssp CSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHH
Confidence 345679999999999999999999999999999999999999999999999864
No 10
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-21 Score=107.26 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=51.7
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCCC
Q psy14249 3 AHQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLH--NADLSKMLARILLTCAPT 59 (60)
Q Consensus 3 ~~~~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~~ 59 (60)
+......++++.||||+||||+|++++|..|+.+||+++ +.||+++||++|++|+++
T Consensus 4 g~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~ 62 (86)
T 2eqz_A 4 GSSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGK 62 (86)
T ss_dssp CCSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHH
Confidence 445566789999999999999999999999999999997 699999999999999864
No 11
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=4.5e-21 Score=105.11 Aligned_cols=48 Identities=46% Similarity=0.774 Sum_probs=45.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.++||||+||||||++++|..|+.++|++++.|||++||++|++|+++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~e 49 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNL 49 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSG
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHH
Confidence 578999999999999999999999999999999999999999999875
No 12
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.83 E-value=4.2e-21 Score=106.25 Aligned_cols=48 Identities=40% Similarity=0.742 Sum_probs=46.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+++||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~e 49 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEA 49 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHH
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
Confidence 689999999999999999999999999999999999999999999864
No 13
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=3.5e-21 Score=104.81 Aligned_cols=47 Identities=45% Similarity=0.861 Sum_probs=44.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++||||+||||||++++|..|+.++|++++.|||++||++|++|+++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 47 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDS 47 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHH
Confidence 57999999999999999999999999999999999999999999864
No 14
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.83 E-value=3e-21 Score=103.05 Aligned_cols=47 Identities=64% Similarity=0.953 Sum_probs=41.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++||||+||||||++++|..|+.++|++++.|||++||++|++|+++
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 47 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLA 47 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHH
Confidence 47999999999999999999999999999999999999999999864
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.83 E-value=4e-21 Score=105.48 Aligned_cols=49 Identities=63% Similarity=0.932 Sum_probs=43.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 11 KEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 11 ~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+++||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 51 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLA 51 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHH
Confidence 4678999999999999999999999999999999999999999999864
No 16
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.83 E-value=4.8e-21 Score=105.20 Aligned_cols=51 Identities=33% Similarity=0.548 Sum_probs=48.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..++++||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~ 52 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPK 52 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHH
Confidence 357889999999999999999999999999999999999999999999864
No 17
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.9e-20 Score=101.01 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=43.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
|+.||||+||||+|++++|..|+.+||++++.|||++||++|++|
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999
No 18
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=105.98 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=48.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..++++||||+||||+|++++|..|+.+||++++.||+++||++|++|+++
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~e 52 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEE 52 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHH
Confidence 357889999999999999999999999999999999999999999999864
No 19
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=108.60 Aligned_cols=54 Identities=46% Similarity=0.789 Sum_probs=45.6
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 6 QQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 6 ~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+..+++++||||+|||||||+++|..|+.++|++++.|||++||++|++|+++
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~e 74 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNES 74 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHH
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHH
Confidence 346688999999999999999999999999999999999999999999999864
No 20
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.82 E-value=1.3e-20 Score=104.31 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=44.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~e 47 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSRE 47 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHH
Confidence 37999999999999999999999999999999999999999999864
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.82 E-value=1.2e-20 Score=103.04 Aligned_cols=47 Identities=47% Similarity=0.844 Sum_probs=44.9
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++||||+||||+|++++|..|+.++|++++.|||++||++|++|+++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~e 47 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSET 47 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 47999999999999999999999999999999999999999999864
No 22
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.81 E-value=4.5e-20 Score=98.65 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=43.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHhhcCCCC
Q psy14249 14 RIRRPMNAFMVWAKVERKKLADENPDLHN--ADLSKMLARILLTCAPT 59 (60)
Q Consensus 14 ~pKRP~naf~lf~~~~r~~i~~~~P~~~~--~eisk~lg~~W~~l~~~ 59 (60)
+||||+||||+|++++|..|+.+||++++ .||+++||++|++|+++
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~ 48 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 48 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTT
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHH
Confidence 58999999999999999999999999975 99999999999999986
No 23
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.81 E-value=1.1e-20 Score=104.02 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=48.0
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLH--NADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~~ 59 (60)
.++++.||||+||||+|++++|..|+.+||+++ +.||+++||++|++|+++
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~ 54 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 54 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHH
Confidence 468999999999999999999999999999997 599999999999999875
No 24
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.81 E-value=2.8e-21 Score=108.67 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=49.5
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+||||||++++|..|+.+||++++.|||++||++|++|+++
T Consensus 13 k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~e 65 (93)
T 1cg7_A 13 RKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPE 65 (93)
T ss_dssp CCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 45578999999999999999999999999999999999999999999999753
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.80 E-value=6.1e-21 Score=107.84 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=50.0
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLH--NADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+||||||++++|..|+.+||+++ +.|||++||++|++|+++
T Consensus 15 k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~e 69 (97)
T 2lhj_A 15 KAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDE 69 (97)
T ss_dssp CTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCST
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHH
Confidence 35578999999999999999999999999999999 999999999999999986
No 26
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.76 E-value=6.4e-19 Score=106.05 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=49.5
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.++++.||||+||||+||+++|..|+.+||+++++||+++||++|++|+++
T Consensus 81 k~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~ 133 (159)
T 2gzk_A 81 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 133 (159)
T ss_dssp GGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHH
T ss_pred ccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHH
Confidence 34578999999999999999999999999999999999999999999999864
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=106.14 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=49.2
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+.++++.||||+||||||++++|..|+.+||++++.||+++||++|++|+++
T Consensus 95 ~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~ 146 (173)
T 2yrq_A 95 KFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 146 (173)
T ss_dssp SCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGG
T ss_pred cccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHH
Confidence 4468999999999999999999999999999999999999999999999875
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=104.63 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=50.3
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHhhcCCCC
Q psy14249 5 QQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPD--LHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 5 ~~~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~--~~~~eisk~lg~~W~~l~~~ 59 (60)
.....++++.||||+||||+|++++|..|+.+||+ +++.||+++||++|++|+++
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~ 62 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAK 62 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 34456799999999999999999999999999999 68999999999999999864
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=90.15 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++||||+||||+|++++|..++.++| .||+++||++|++|+++
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~ 43 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDS 43 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHH
Confidence 57999999999999999999998776 79999999999999864
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=9.9e-18 Score=96.66 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=46.3
Q ss_pred ccccccCCCCC-CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 5 QQQKTAKEQRI-RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 5 ~~~~~~~~~~p-KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.+.+.++++.| |||+||||+||+++|..|+ ++++.||+++||++|++|+++
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~ 58 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQK 58 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHH
Confidence 45677899999 9999999999999999987 789999999999999999864
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.7e-18 Score=96.33 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=46.0
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHH---HHHhhcCCCC
Q psy14249 8 KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKML---ARILLTCAPT 59 (60)
Q Consensus 8 ~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~l---g~~W~~l~~~ 59 (60)
.....++||||+||||+|++++|.+|+.+ ++++.||+++| |++|++|+++
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~e 56 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREE 56 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHH
Confidence 35678899999999999999999999998 89999999999 9999999863
No 32
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-19 Score=100.65 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=45.2
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCCC
Q psy14249 7 QKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLH--NADLSKMLARILLTCAPT 59 (60)
Q Consensus 7 ~~~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~~ 59 (60)
...++++.||||+|||||||+++|.+|+.+||+++ ++||+ ++|++|+++
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~e 65 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQ 65 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHH
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHH
Confidence 34578999999999999999999999999999999 99999 999999864
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.68 E-value=5.9e-17 Score=91.65 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=44.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 13 QRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 13 ~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+.||||++|||||+++.|..++.++|+ +++||++.||++|++|+++
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~ 48 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKK 48 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHH
Confidence 689999999999999999999999999 9999999999999999864
No 34
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.67 E-value=4.9e-17 Score=97.77 Aligned_cols=48 Identities=40% Similarity=0.742 Sum_probs=45.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 12 ~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
+++||||+||||+|+++.|.+|+.+||++++.|||++||++|++|+++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~ 49 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEA 49 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHH
Confidence 678999999999999999999999999999999999999999999863
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.67 E-value=2.5e-17 Score=103.87 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=46.8
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 10 ~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..++.||||+||||+|++++|..|+.+||++++.|||++||++|++|+++
T Consensus 5 ~~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~ 54 (214)
T 3tq6_A 5 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDS 54 (214)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHH
Confidence 34678999999999999999999999999999999999999999999863
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.6e-17 Score=105.16 Aligned_cols=51 Identities=14% Similarity=0.306 Sum_probs=47.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
..+++.||||+||||+|++++|..|+.+||++++.||+++||++|++|+++
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~ 86 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDS 86 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHH
Confidence 356789999999999999999999999999999999999999999999863
No 37
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.63 E-value=2.2e-16 Score=90.05 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=41.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.....+||||+||||+|+++++. ..+++++++.||+++||++|++|+++
T Consensus 3 s~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~ 51 (101)
T 1v63_A 3 SGSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQS 51 (101)
T ss_dssp CCCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHH
Confidence 35567899999999999999975 34556688999999999999999864
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.51 E-value=1.8e-15 Score=96.63 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=42.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 9 TAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 9 ~~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
.++++.||||+|||||||+++|..|+.++|+ ||+++||++|++|+++
T Consensus 141 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~ 187 (238)
T 3tmm_A 141 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDS 187 (238)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTT
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHH
Confidence 3579999999999999999999998877664 9999999999999986
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.51 E-value=9.7e-16 Score=96.60 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=41.5
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhhcCCCC
Q psy14249 10 AKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAPT 59 (60)
Q Consensus 10 ~~~~~pKRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W~~l~~~ 59 (60)
++++.||||+||||+||+++|..|+.++|+ ||+++||++|++|+++
T Consensus 110 kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~ 155 (214)
T 3tq6_A 110 TLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDS 155 (214)
T ss_dssp HHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHH
T ss_pred ccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHH
Confidence 579999999999999999999998877664 9999999999999864
No 40
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=42.14 E-value=3.6 Score=17.67 Aligned_cols=11 Identities=9% Similarity=0.655 Sum_probs=8.1
Q ss_pred CCCCChHHHHH
Q psy14249 15 IRRPMNAFMVW 25 (60)
Q Consensus 15 pKRP~naf~lf 25 (60)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 56888888665
No 41
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.00 E-value=30 Score=18.03 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHH---HhhCC---CCCHHHHHHHHH
Q psy14249 22 FMVWAKVERKKL---ADENP---DLHNADLSKMLA 50 (60)
Q Consensus 22 f~lf~~~~r~~i---~~~~P---~~~~~eisk~lg 50 (60)
||-...+...+| ..+++ .++..||++.||
T Consensus 4 ~~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 4 MLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 444444444433 34566 788999999887
No 42
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=35.29 E-value=17 Score=19.20 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhcC
Q psy14249 42 NADLSKMLARILLTC 56 (60)
Q Consensus 42 ~~eisk~lg~~W~~l 56 (60)
+..|+..+|..|+.|
T Consensus 17 ~~~ia~~lg~~Wk~L 31 (99)
T 1fad_A 17 FDIVCDNVGRDWKRL 31 (99)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHH
Confidence 567888899999865
No 43
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=32.05 E-value=34 Score=18.79 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.1
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhhcC
Q psy14249 32 KLADENPDLHNADLSKMLARILLTC 56 (60)
Q Consensus 32 ~i~~~~P~~~~~eisk~lg~~W~~l 56 (60)
.|++.+++-....+++.|=..|+.+
T Consensus 61 ~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 61 GVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHccCCcHHHHHHHHHHHHHHHHH
Confidence 5666678888999999999999876
No 44
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.95 E-value=70 Score=17.85 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~ 52 (60)
.+|++|.-+| ..++++.|+++...|-+.|..+
T Consensus 35 ~~~~sa~ei~-----~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 35 MAHPTADDIY-----KALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp SSCCCHHHHH-----HHHGGGCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----HHHHHhCCCCChhhHHHHHHHH
Confidence 4578887777 5678889999999998887643
No 45
>2atm_A Hyaluronoglucosaminidase; beta-alpha-barrels, hydrolase; HET: MES; 2.00A {Vespula vulgaris}
Probab=30.88 E-value=1e+02 Score=20.48 Aligned_cols=33 Identities=6% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHh
Q psy14249 21 AFMVWAKVERKKLADENPDLHNADLSKMLARIL 53 (60)
Q Consensus 21 af~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W 53 (60)
.--+|.+.-++-++++||+.+..+|.+.+.+.+
T Consensus 121 ~k~iYr~~S~~lv~~~hp~ws~~~v~~~A~~~F 153 (331)
T 2atm_A 121 NMKIHKNFSIDLVRNEHPTWNKKXIELEASKRF 153 (331)
T ss_dssp GGTHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 345788888899999999999999988776554
No 46
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.38 E-value=75 Score=17.45 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy14249 17 RPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52 (60)
Q Consensus 17 RP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~ 52 (60)
+|++|.-+| ..++++.|+++...|-+.|..+
T Consensus 33 ~~~sa~ei~-----~~l~~~~~~is~aTVYR~L~~L 63 (136)
T 1mzb_A 33 RHMSAEDVY-----KALMEAGEDVGLATVYRVLTQF 63 (136)
T ss_dssp CSBCHHHHH-----HHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHH-----HHHHhhCCCCCHHHHHHHHHHH
Confidence 688898887 5577888999999998887654
No 47
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.03 E-value=53 Score=15.61 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHHHhhC-----CCCCHHHHHHHHH
Q psy14249 29 ERKKLADEN-----PDLHNADLSKMLA 50 (60)
Q Consensus 29 ~r~~i~~~~-----P~~~~~eisk~lg 50 (60)
.|.-|.--+ .+++..||+..+|
T Consensus 10 er~il~l~~~l~~~~g~s~~eIA~~lg 36 (68)
T 2p7v_B 10 EAKVLRMRFGIDMNTDYTLEEVGKQFD 36 (68)
T ss_dssp HHHHHHHHTTTTSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHC
Confidence 344444444 6888999988775
No 48
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel, glycosidase family 56, allergen, hydrolase; 1.60A {Apis mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Probab=27.48 E-value=1.2e+02 Score=20.24 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHh
Q psy14249 20 NAFMVWAKVERKKLADENPDLHNADLSKMLARIL 53 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W 53 (60)
..--+|.+.=++-++++||+.+..+|.+.+.+.+
T Consensus 124 ~~k~iYr~~S~~Lv~~~hp~ws~~~v~~~A~~~F 157 (350)
T 1fcq_A 124 ASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRF 157 (350)
T ss_dssp GGGHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3456788888899999999999999988776554
No 49
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.03 E-value=90 Score=17.55 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy14249 17 RPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52 (60)
Q Consensus 17 RP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~ 52 (60)
+|++|+-|| ..++++.|+++...|-+.|..+
T Consensus 32 ~h~sa~ei~-----~~l~~~~~~is~aTVYR~L~~L 62 (150)
T 2w57_A 32 QHISAEELY-----KKLIDLGEEIGLATVYRVLNQF 62 (150)
T ss_dssp SSEEHHHHH-----HHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHH-----HHHHHhCCCCCHHHHHHHHHHH
Confidence 688888777 5578889999999998887654
No 50
>3lyn_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.70A {Haliotis fulgens} SCOP: a.19.1.1
Probab=24.56 E-value=26 Score=20.59 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCH---HHHHHHHHH
Q psy14249 20 NAFMVWAKVERKKLADENPDLHN---ADLSKMLAR 51 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~---~eisk~lg~ 51 (60)
+.||+|+.. +|++-+-.-+. ..|..++|+
T Consensus 63 ~nym~W~~k---~i~kLgR~P~~~DY~~lGaeiGR 94 (136)
T 3lyn_A 63 QNYMLWVKR---KIKALGRPAAVGDYTRLGAEIGR 94 (136)
T ss_dssp HHHHHHHHH---HHHTTSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHhCCCCchhHHHHHHHHHcc
Confidence 457777754 34444322233 445555554
No 51
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.32 E-value=47 Score=17.57 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=12.8
Q ss_pred CCCCChHHHHHHHHHH
Q psy14249 15 IRRPMNAFMVWAKVER 30 (60)
Q Consensus 15 pKRP~naf~lf~~~~r 30 (60)
++|.++||-.|+..-+
T Consensus 64 ~~rG~~Af~~F~~aL~ 79 (97)
T 3ygs_P 64 ETRGSQALPLFISCLE 79 (97)
T ss_dssp TTSCTTHHHHHHHHHH
T ss_pred HHcChHHHHHHHHHHH
Confidence 6788899999987554
No 52
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.26 E-value=68 Score=15.87 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCC
Q psy14249 26 AKVERKKLADENPDLHN-----ADLSKMLARILLTCA 57 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~W~~l~ 57 (60)
.+.+|...+.-||+... .+.-+.|.+.|..|+
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 61 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 35566777777888653 466777777777664
No 53
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=23.75 E-value=20 Score=21.46 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHH
Q psy14249 30 RKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 30 r~~i~~~~P~~~~~eisk~lg 50 (60)
...+++++|++...|+.+.++
T Consensus 5 ~~~~~~~~P~~~~~dla~~l~ 25 (174)
T 2ph0_A 5 LNELLATNPDGTLEDIAGKYN 25 (174)
T ss_dssp HHHHHHTCCCSCHHHHHHHTT
T ss_pred HHHHHHHCcCchHHHHHHHcC
Confidence 356788999999999998764
No 54
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG BMA MAN; 2.00A {Homo sapiens}
Probab=23.56 E-value=1.5e+02 Score=20.35 Aligned_cols=33 Identities=9% Similarity=0.204 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHh
Q psy14249 21 AFMVWAKVERKKLADENPDLHNADLSKMLARIL 53 (60)
Q Consensus 21 af~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W 53 (60)
.--+|.+.=++-++++||+.+..+|.+.+.+.+
T Consensus 124 ~k~iYr~~S~~Lv~~~hp~ws~~~v~~~A~~~F 156 (424)
T 2pe4_A 124 TKDIYRQRSRALVQAQHPDWPAPQVEAVAQDQF 156 (424)
T ss_dssp GGHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 456788888899999999999999988876554
No 55
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=23.52 E-value=60 Score=21.52 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHH
Q psy14249 28 VERKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 28 ~~r~~i~~~~P~~~~~eisk~lg 50 (60)
+....+++++|++...|+++.||
T Consensus 7 ~~~~~~~~~~P~~~~rd~A~~lg 29 (345)
T 2j0p_A 7 EQYLQAKADNPGKYARDLATLMG 29 (345)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHTT
T ss_pred HHHHHHHHhCcCCcHHHHHHHcC
Confidence 44566889999999999998764
No 56
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat; HET: HEM; 1.45A {Escherichia coli} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=23.34 E-value=70 Score=21.38 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.6
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHH
Q psy14249 28 VERKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 28 ~~r~~i~~~~P~~~~~eisk~lg 50 (60)
+....+++++|++...||++.||
T Consensus 17 ~~~~~l~~e~P~~~~rdlA~~Lg 39 (354)
T 2hq2_A 17 TRWLELKEQNPGKYARDIAGLMN 39 (354)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHTT
T ss_pred HHHHHHHHHCCCCcHHHHHHHcC
Confidence 34456889999999999998764
No 57
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=23.33 E-value=77 Score=15.48 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhCCCCCH--HHHHHHHHHHhhcCCC
Q psy14249 26 AKVERKKLADENPDLHN--ADLSKMLARILLTCAP 58 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~~--~eisk~lg~~W~~l~~ 58 (60)
.+.+|...+.-||+... .+.-+.|.+.|..|+.
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d 60 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSD 60 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCC
Confidence 35566677777898764 4677778888877653
No 58
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=22.73 E-value=28 Score=14.50 Aligned_cols=11 Identities=45% Similarity=0.537 Sum_probs=7.2
Q ss_pred CCCCCCChHHH
Q psy14249 13 QRIRRPMNAFM 23 (60)
Q Consensus 13 ~~pKRP~naf~ 23 (60)
..|-.|+|||.
T Consensus 9 qppapppnafv 19 (26)
T 2lkw_A 9 QPPAPPPNAFV 19 (26)
T ss_pred cCCCcCCCeeE
Confidence 34556788875
No 59
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.27 E-value=50 Score=16.73 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=13.4
Q ss_pred HhhCC---CCCHHHHHHHHH
Q psy14249 34 ADENP---DLHNADLSKMLA 50 (60)
Q Consensus 34 ~~~~P---~~~~~eisk~lg 50 (60)
..+++ .++..||++.||
T Consensus 23 L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 23 LEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHCSSSCEEHHHHHHHHC
T ss_pred HHHcCCCCCcCHHHHHHHHC
Confidence 56677 788899988876
No 60
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=21.94 E-value=79 Score=15.17 Aligned_cols=13 Identities=0% Similarity=0.089 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHH
Q psy14249 38 PDLHNADLSKMLA 50 (60)
Q Consensus 38 P~~~~~eisk~lg 50 (60)
.+++..||+..+|
T Consensus 29 ~~~s~~eIA~~l~ 41 (73)
T 1ku3_A 29 REHTLEEVGAYFG 41 (73)
T ss_dssp SCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHC
Confidence 6888889888775
No 61
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=21.31 E-value=97 Score=15.93 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCC--HHHHHHHHHHHhhcCCC
Q psy14249 26 AKVERKKLADENPDLH--NADLSKMLARILLTCAP 58 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~--~~eisk~lg~~W~~l~~ 58 (60)
.+.+|..++.-||+.. ..+.-+.|.+.|..|+.
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d 60 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILND 60 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCC
Confidence 3566777778889875 45677778888877753
No 62
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.13 E-value=1.2e+02 Score=16.80 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~ 52 (60)
..|++|.-+| ..+++++|.++...|=+.|..+
T Consensus 27 ~~h~sa~eI~-----~~l~~~~~~is~aTVYR~L~~L 58 (139)
T 3mwm_A 27 EEFRSAQELH-----DMLKHKGDAVGLTTVYRTLQSL 58 (139)
T ss_dssp SSCEEHHHHH-----HHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----HHHHHhCCCCCHHHHHHHHHHH
Confidence 3588998777 5577889999999888877654
No 63
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.88 E-value=19 Score=19.64 Aligned_cols=15 Identities=20% Similarity=-0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhhcC
Q psy14249 42 NADLSKMLARILLTC 56 (60)
Q Consensus 42 ~~eisk~lg~~W~~l 56 (60)
+..|+..+|..|+.|
T Consensus 21 ~~~ia~~lg~~Wk~L 35 (111)
T 2yqf_A 21 MAVISEHLGLSWAEL 35 (111)
T ss_dssp HHHHHHHHTTTHHHH
T ss_pred HHHHHHHHhhhHHHH
Confidence 566777778778765
No 64
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.71 E-value=20 Score=19.50 Aligned_cols=16 Identities=13% Similarity=-0.054 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhcCC
Q psy14249 42 NADLSKMLARILLTCA 57 (60)
Q Consensus 42 ~~eisk~lg~~W~~l~ 57 (60)
+..|+..+|..|+.|.
T Consensus 21 ~~~ia~~lg~~Wk~LA 36 (110)
T 1wxp_A 21 IEVFANKLGEQWKILA 36 (110)
T ss_dssp HHHHHHHHTTTHHHHT
T ss_pred HHHHHHHHhhhHHHHH
Confidence 4567777777887664
No 65
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.52 E-value=1.3e+02 Score=16.91 Aligned_cols=30 Identities=3% Similarity=0.092 Sum_probs=22.3
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q psy14249 17 RPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51 (60)
Q Consensus 17 RP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~ 51 (60)
+|++|+-+| ..++++.|+++...|=+.|..
T Consensus 41 ~~~sa~ei~-----~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 41 THLSPEEIT-----HSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp SCBCHHHHH-----HHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHH-----HHHHHhCCCCCHhhHHHHHHH
Confidence 577887777 557777888888888777654
No 66
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.28 E-value=1e+02 Score=15.67 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14249 20 NAFMVWAKVERKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 20 naf~lf~~~~r~~i~~~~P~~~~~eisk~lg 50 (60)
..|+.-.+-.+..-.-.+++.+..||+..+|
T Consensus 49 ~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~G 79 (103)
T 3lsg_A 49 QDYLLQKRMEKAKLLLLTTELKNYEIAEQVG 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHhC
Confidence 3444444443333233457889999987765
No 67
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.22 E-value=1.2e+02 Score=16.49 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHh
Q psy14249 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARIL 53 (60)
Q Consensus 16 KRP~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg~~W 53 (60)
..|++|.-+| ..++++.|+++...|-+.|..+-
T Consensus 24 ~~~~sa~ei~-----~~l~~~~~~is~~TVYR~L~~L~ 56 (131)
T 2o03_A 24 DDFRSAQELH-----DELRRRGENIGLTTVYRTLQSMA 56 (131)
T ss_dssp CSCEEHHHHH-----HHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----HHHHHhCCCCCHhhHHHHHHHHH
Confidence 4578887777 55778889999998888876543
No 68
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.22 E-value=1.1e+02 Score=16.26 Aligned_cols=33 Identities=24% Similarity=0.124 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHhhcCCC
Q psy14249 26 AKVERKKLADENPDLHN-----ADLSKMLARILLTCAP 58 (60)
Q Consensus 26 ~~~~r~~i~~~~P~~~~-----~eisk~lg~~W~~l~~ 58 (60)
.+.+|...+.-||+... .+.-+.|.+.|..|+.
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d 72 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD 72 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 35667777788898764 4666778888877653
No 69
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.21 E-value=1.1e+02 Score=16.08 Aligned_cols=32 Identities=3% Similarity=-0.054 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q psy14249 19 MNAFMVWAKVERKKLADENPDLHNADLSKMLA 50 (60)
Q Consensus 19 ~naf~lf~~~~r~~i~~~~P~~~~~eisk~lg 50 (60)
+..|+.-.+-.+..-.-.+++++..||+..+|
T Consensus 51 ~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~G 82 (120)
T 3mkl_A 51 YSQLLTECRMQRALQLIVIHGFSIKRVAVSCG 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHC
Confidence 34555555444443334568899999988766
Done!