RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14249
         (60 letters)



>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 80

 Score = 47.1 bits (112), Expect = 7e-10
 Identities = 21/45 (46%), Positives = 33/45 (73%)

Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARILLTCAP 58
          R++RPMNAFMVW++ +R+K+A ENP +HN+++SK L       + 
Sbjct: 2  RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSE 46


>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 70

 Score = 43.3 bits (102), Expect = 2e-08
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
           I+RPMNAFMVWAK ER+K+    PD+HN+++SK+L  
Sbjct: 2  HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGS 39


>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 43.7 bits (103), Expect = 2e-08
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 12 EQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
          + R++RPMNAF+VW++ +R+K+A ENP + N+++SK L  
Sbjct: 2  QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGY 41


>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 86

 Score = 42.5 bits (100), Expect = 6e-08
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 15 IRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLARI 52
          I++P+NAFM++ K  R  +  E+    +A ++++L R 
Sbjct: 3  IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRR 40


>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 90

 Score = 40.7 bits (95), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 33/47 (70%)

Query: 5  QQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
          Q+      ++ +RP++A  ++++ +R++L +E P+L  ++L+++LAR
Sbjct: 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLAR 57


>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId:
          7227]}
          Length = 73

 Score = 39.8 bits (93), Expect = 5e-07
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
          + +RP++A+M+W    R+ +  ENP +   +++K    
Sbjct: 3  KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGE 40


>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1
          {Hamster (Cricetulus griseus) [TaxId: 10029]}
          Length = 79

 Score = 38.7 bits (90), Expect = 2e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 16 RRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
          +RP +AF ++    R K+  E+P L   D++K L  
Sbjct: 4  KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGE 39


>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 93

 Score = 36.8 bits (85), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 5  QQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKML 49
            +K       +R ++A+M +A   R  +  ENPD+    + K L
Sbjct: 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKL 55


>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 35.6 bits (82), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 14 RIRRPMNAFMVWAKVERKKLADENPD--LHNADLSKMLARILLTCAP 58
          + R  M+++  + +  R++   ++PD  ++ ++ SK  +    T + 
Sbjct: 1  KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA 47


>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 91

 Score = 34.9 bits (80), Expect = 5e-05
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 14 RIRRPMNAFMVWAKVERKKLADENPDLHNADLSKM 48
            ++P+  +  +   +R K A  +P++ N DL+K+
Sbjct: 10 FPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKI 44


>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 101

 Score = 33.3 bits (76), Expect = 3e-04
 Identities = 3/44 (6%), Positives = 12/44 (27%), Gaps = 2/44 (4%)

Query: 8  KTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
           +      + PMN +  +++         +      +    +  
Sbjct: 2  SSGSSGPKKPPMNGYQKFSQELLSNGELNHLP--LKERMVEIGS 43


>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 108

 Score = 30.3 bits (68), Expect = 0.004
 Identities = 5/51 (9%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 1  MSAHQQQKTAKEQRIRRPMNAFMVWAKVERKKLADENPDLHNADLSKMLAR 51
           S+ Q +     +  + P N++ ++       +     D+ + +   + ++
Sbjct: 4  GSSGQLKDKFDGRPTKPPPNSYSLYCAELMANM----KDVPSTERMVLCSQ 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.127    0.373 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 206,826
Number of extensions: 6600
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 13
Length of query: 60
Length of database: 2,407,596
Length adjustment: 30
Effective length of query: 30
Effective length of database: 1,995,696
Effective search space: 59870880
Effective search space used: 59870880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)