BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14250
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RJP|A Chain A, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|B Chain B, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|C Chain C, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|2RJP|D Chain D, Crystal Structure Of Adamts4 With Inhibitor Bound
pdb|3B2Z|A Chain A, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|B Chain B, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|C Chain C, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|D Chain D, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|E Chain E, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|F Chain F, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|G Chain G, Crystal Structure Of Adamts4 (Apo Form)
pdb|3B2Z|H Chain H, Crystal Structure Of Adamts4 (Apo Form)
Length = 316
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C + S AI+ED G AAH++GH+ +HD S P L
Sbjct: 117 TLGMADVGTVC------DPARSCAIVEDDG-LQSAFTAAHQLGHVFNMLHDNSKPCISLN 169
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRV 123
GP + R +M+ H + WSPCS FL+ CL + P LP
Sbjct: 170 GPLSTS-RHVMAPVMA---HVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPVT 225
Query: 124 LPGKLLSLDAQCR 136
PGK D QC+
Sbjct: 226 FPGKDYDADRQCQ 238
>pdb|2JIH|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2JIH|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-rich Domain (complex-form)
pdb|2V4B|A Chain A, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
pdb|2V4B|B Chain B, Crystal Structure Of Human Adamts-1 Catalytic Domain And
Cysteine-Rich Domain (Apo-Form)
Length = 300
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C + S ++IED G AHE+GH+ HD + L
Sbjct: 117 TLGMADVGTVC------DPSRSCSVIED-DGLQAAFTTAHELGHVFNMPHDDAKQCASLN 169
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRV 123
G + ++S+L H++ WSPCS FL+ CL + P LP
Sbjct: 170 GVNQDSHMMAS--MLSNLDHSQP---WSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGD 224
Query: 124 LPGKLLSLDAQCR 136
LPG + QC+
Sbjct: 225 LPGTSYDANRQCQ 237
>pdb|3Q2G|A Chain A, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2G|B Chain B, Adamts1 In Complex With A Novel N-Hydroxyformamide
Inhibitors
pdb|3Q2H|A Chain A, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
pdb|3Q2H|B Chain B, Adamts1 In Complex With N-Hydroxyformamide Inhibitors Of
Adam-Ts4
Length = 297
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C + S ++IED G AHE+GH+ HD + L
Sbjct: 114 TLGMADVGTVC------DPSRSCSVIED-DGLQAAFTTAHELGHVFNMPHDDAKQCASLN 166
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRV 123
G + ++S+L H++ WSPCS FL+ CL + P LP
Sbjct: 167 GVNQDSHMMAS--MLSNLDHSQP---WSPCSAYMITSFLDNGHGECLMDKPQNPIQLPGD 221
Query: 124 LPGKLLSLDAQCR 136
LPG + QC+
Sbjct: 222 LPGTSYDANRQCQ 234
>pdb|2RJQ|A Chain A, Crystal Structure Of Adamts5 With Inhibitor Bound
Length = 378
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 25 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHT 84
S A+IED G + VA HE+GHLLG HD S G ED +MS + +
Sbjct: 132 SCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETFGST------EDKRLMSSILTS 184
Query: 85 EKGFK-WSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRVLPGKLLSLDAQC 135
K WS C+ ++ FL+ CL + P + P LPG+ QC
Sbjct: 185 IDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEELPGQTYDATQQC 236
>pdb|1KUF|A Chain A, High-Resolution Crystal Structure Of A Snake Venom
Metalloproteinase From Taiwan Habu
pdb|1KUI|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Peqw.
pdb|1KUK|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Pekw
Length = 203
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIED--TGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGG 64
+AYVG C ++ SVA+++D + F + HE+GH LG HD
Sbjct: 112 WAYVGRMC------DEKYSVAVVKDHSSKVFMVAVTMTHELGHNLGMEHDDK-------- 157
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+KC+ D IMS + ++ +S CS + FL D C+ N+P
Sbjct: 158 ---DKCKC-DTCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP 203
>pdb|3B8Z|A Chain A, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
pdb|3B8Z|B Chain B, High Resolution Crystal Structure Of The Catalytic Domain
Of Adamts-5 (Aggrecanase-2)
Length = 217
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 25 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHT 84
S A+IED G + VA HE+GHLLG HD S G ED +MS + +
Sbjct: 130 SCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETFGST------EDKRLMSSILTS 182
Query: 85 EKGFK-WSPCSVSSFHHFLNGDTATCLFNSP 114
K WS C+ ++ FL+ CL + P
Sbjct: 183 IDASKPWSKCTSATITEFLDDGHGNCLLDLP 213
>pdb|3LJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 218
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 25 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHT 84
S A+IED G + VA HE+GHLLG HD S G ED +MS + +
Sbjct: 131 SCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETFGST------EDKRLMSSILTS 183
Query: 85 EKGFK-WSPCSVSSFHHFLNGDTATCLFNSP 114
K WS C+ ++ FL+ CL + P
Sbjct: 184 IDASKPWSKCTSATITEFLDDGHGNCLLDLP 214
>pdb|3HY7|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY7|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With Marimastat
pdb|3HY9|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HY9|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|A Chain A, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
pdb|3HYG|B Chain B, Crystal Structure Of The Catalytic Domain Of Adamts-5 In
Complex With An Amino-2-Indanol Compound
Length = 221
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 25 SVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHT 84
S A+IED G + VA HE+GHLLG HD S G ED +MS + +
Sbjct: 134 SCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETFGST------EDKRLMSSILTS 186
Query: 85 EKGFK-WSPCSVSSFHHFLNGDTATCLFNSP 114
K WS C+ ++ FL+ CL + P
Sbjct: 187 IDASKPWSKCTSATITEFLDDGHGNCLLDLP 217
>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 422
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGG 64
AY+G C S A+++D + + I AHE+GH LG HD
Sbjct: 118 LAYIGSIC------NPKTSAAVVQDYSSRTRMVAITMAHEMGHNLGMNHDRG-----FCT 166
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
G KC +MS R T+ +++S CSV +L D C+ N P
Sbjct: 167 CGFNKC------VMS-TRRTKPAYQFSSCSVREHQRYLLRDRPQCILNKP 209
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAA--HEVGHLLGAVHDGSPPPTYLGGP 65
AY+G C N+ SVAI++D ++ + HE+GH LG HD +
Sbjct: 114 AYIGSLCKTNE------SVAIVQDYNRRISLVASTITHELGHNLGIHHDKA--------- 158
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
C G + + T F++S CS+ + +L D C+ N P
Sbjct: 159 ---SCICIPGPCIMLKKRTAPAFQFSSCSIREYREYLLRDRPQCILNKP 204
>pdb|1KUG|A Chain A, Crystal Structure Of A Taiwan Habu Venom Metalloproteinase
Complexed With Its Endogenous Inhibitor Penw
Length = 203
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 20/110 (18%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIED--TGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGG 64
+AYVG C ++ SVA+++D + F + HE+GH LG HD
Sbjct: 112 WAYVGRMC------DEKYSVAVVKDHSSKVFMVAVTMTHELGHNLGMEHDDK-------- 157
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+KC+ IMS + ++ +S CS + FL D C+ N+P
Sbjct: 158 ---DKCKCT-TCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP 203
>pdb|1WNI|A Chain A, Crystal Structure Of H2-Proteinase
Length = 201
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDT--GGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGG 64
AY G C N +L SV +++D F + HE+GH LG HD
Sbjct: 110 LAYKKGMC--NPKL----SVGLVQDYSPNVFMVAVTMTHELGHNLGMEHDDK-------- 155
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+KC+ E IMSD+ + +S CS + + FL C+ N+P
Sbjct: 156 ---DKCKCE-ACIMSDVISDKPSKLFSDCSKNDYQTFLTKYNPQCILNAP 201
>pdb|2E3X|A Chain A, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 427
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTY 61
T ++ G C + SV I+++ G F ++ AHE+ H LG HDG
Sbjct: 110 TLGITFLAGMC------QAYRSVGIVQEQGNRNFKTAVIMAHELSHNLGMYHDG------ 157
Query: 62 LGGPGAEKCRWED-GFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+ C D +MS + + +S CS+ + +L C+FN P
Sbjct: 158 ------KNCICNDSSCVMSPVLSDQPSKLFSNCSIHDYQRYLTRYKPKCIFNPP 205
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIED--TGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY GG C + +SV ++ D + AHE+GH LG HD
Sbjct: 111 AYTGGMC------DPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTGSCSC----- 159
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA+ C IM+ + +++S CS + + +L C+ N P
Sbjct: 160 GAKSC------IMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP 202
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIED--TGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY GG C + +SV ++ D + AHE+GH LG HD
Sbjct: 111 AYTGGMC------DPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIHHDTGSCSC----- 159
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA+ C IM+ + +++S CS + + +L C+ N P
Sbjct: 160 GAKSC------IMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP 202
>pdb|3DSL|B Chain B, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom.
pdb|3DSL|A Chain A, The Three-Dimensional Structure Of Bothropasin, The Main
Hemorrhagic Factor From Bothrops Jararaca Venom
Length = 419
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 22/141 (15%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGII--VAAHEVGHLLGAVHDGSPPPTY 61
T +AY+G C + SVAI+ED + ++ + AHE+GH LG HD T
Sbjct: 108 TIGYAYIGSMCHPKR------SVAIVEDYSPINLVVAVIMAHEMGHNLGIHHD-----TD 156
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP-HEDESL 120
G C IM E +S CS F+ + C+ N P D
Sbjct: 157 FCSCGDYPC------IMGPTISNEPSKFFSNCSYIQCWDFIMKENPQCILNEPLGTDIVS 210
Query: 121 PRVLPGKLLSLDAQCRKDRGT 141
P V +LL + +C D GT
Sbjct: 211 PPVCGNELLEVGEEC--DCGT 229
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic
Metalloproteinase Isolated From Bothrops Moojeni Snake
Venom
Length = 200
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG--GFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
A+ GG C + +SV ++ D + AHE+GH LG HDG+
Sbjct: 109 AFTGGMC------DPRHSVGVVMDHSPKNLQVAVTMAHELGHNLGMHHDGNQCHC----- 157
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
A C IM+D +++S CS + + +L C+ N P
Sbjct: 158 DAASC------IMADSLSQVLSYEFSDCSQNQYQTYLTKHNPQCILNEP 200
>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
1(orthorhombic Crystal Form)
pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Inhibitor- Bound Form)
pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
Protein-1(Tetragonal Crystal Form)
Length = 427
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 20/135 (14%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTY 61
T Y+GG C + S I++D + I AHE+GH LG HD
Sbjct: 117 TAGLGYLGGIC------NTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTC- 169
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL- 120
G C +M+ E F +S CS FL + C+ P + + +
Sbjct: 170 ----GTRPC------VMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVS 219
Query: 121 PRVLPGKLLSLDAQC 135
P V + + +C
Sbjct: 220 PAVCGNYFVEVGEEC 234
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGA 67
AY+GG C L K V T + + A + H +G + D +
Sbjct: 111 AYIGGIC----SLLKGGGVNEFGKTDLMA--VTLAQSLAHNIGIISDKRKLA-------S 157
Query: 68 EKCRWED---GFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+C+ ED G IM D + K++ C++ +H FLN CLFN P
Sbjct: 158 GECKCEDTWSGCIMGDTGYYLPK-KFTQCNIEEYHDFLNSGGGACLFNKP 206
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVA--AHEVGHLLGAVHDGSPPPTYLGGP 65
AY C N R +SV I++D + ++ AHE+GH LG HDG
Sbjct: 111 AYTSSMC--NPR----SSVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLR----- 159
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA C G + +++S S+ + FLN C+ N P
Sbjct: 160 GASLCIMRPGLTPG------RSYEFSDDSMGYYQKFLNQYKPQCILNKP 202
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVA--AHEVGHLLGAVHDGSPPPTYLGGP 65
AY C N R +SV I++D + ++ AHE+GH LG HDG
Sbjct: 110 AYTSSMC--NPR----SSVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLR----- 158
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA C G + +++S S+ + FLN C+ N P
Sbjct: 159 GASLCIMRPGLTPG------RSYEFSDDSMGYYQKFLNQYKPQCILNKP 201
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVA--AHEVGHLLGAVHDGSPPPTYLGGP 65
AY C N R +SV I++D + ++ AHE+GH LG HDG
Sbjct: 111 AYTSSMC--NPR----SSVGIVKDHSPINLLVAVTMAHELGHNLGMEHDGKDCLR----- 159
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA C G + +++S S+ + FLN C+ N P
Sbjct: 160 GASLCIMRPGLT------PGRSYEFSDDSMGYYQKFLNQYKPQCILNKP 202
>pdb|1HTD|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1HTD|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Ht-D)
pdb|1ATL|A Chain A, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
pdb|1ATL|B Chain B, Structural Interaction Of Natural And Synthetic Inhibitors
With The Venom Metalloproteinase, Atrolysin C (Form-D)
Length = 202
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 25 SVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLR 82
S+ I++D + + + AHE+GH LG HDG GA C G
Sbjct: 122 SIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLR-----GASLCIMRPGLTKG--- 173
Query: 83 HTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+ +++S S+ + FL C+ N P
Sbjct: 174 ---RSYEFSDDSMHYYERFLKQYKPQCILNKP 202
>pdb|1DTH|A Chain A, Metalloprotease
pdb|1DTH|B Chain B, Metalloprotease
Length = 203
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 25 SVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLR 82
S+ I++D + + + AHE+GH LG HDG GA C G
Sbjct: 123 SIGIVQDHSPINLLMGVTMAHELGHNLGMEHDGKDCLR-----GASLCIMRPGLTKG--- 174
Query: 83 HTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+ +++S S+ + FL C+ N P
Sbjct: 175 ---RSYEFSDDSMHYYERFLKQYKPQCILNKP 203
>pdb|3HDB|A Chain A, Crystal Structure Of Aahiv, A Metalloproteinase From Venom
Of Agkistrodon Acutus
Length = 417
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGG 64
+AY+G C + SV II+D + + ++ AHE+GH LG HD Y GG
Sbjct: 109 YAYIGSMCHPKR------SVGIIQDYSPINLVLAVIMAHEMGHNLGIHHDDG--YCYCGG 160
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL-PRV 123
IM E +S CS F+ C+ N P + + P +
Sbjct: 161 YPC---------IMGPSISPEPSKFFSNCSYIQCWDFIMNHNPECIDNEPLGTDIISPPL 211
Query: 124 LPGKLLSLDAQCRKDRGT 141
+LL + +C D GT
Sbjct: 212 CGNELLEVGEEC--DCGT 227
>pdb|1YP1|A Chain A, Crystal Structure Of A Non-hemorrhagic Fibrin(ogen)olytic
Metalloproteinase From Venom Of Agkistrodon Acutus
Length = 202
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 26/115 (22%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI-----IVAAHEVGHLLGAVHDGSPPPTY 61
A+VG C N + S II+D FS I +V AHE+GH LG +HD
Sbjct: 109 LAFVGTMC--NAKY----SAGIIQD---FSAIPLLMAVVMAHELGHNLGMLHD------- 152
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHE 116
C D IM+ ++ +S CS+ + FL+ + C+ N+ +
Sbjct: 153 ----DGYSCDC-DVCIMAPSLSSDPTKVFSNCSLILYEDFLSNEEPDCIDNASNN 202
>pdb|1QUA|A Chain A, Crystal Structure Of Acutolysin-c, A Hemorrhagic Toxin
From The Snake Venom Of Agkistrodon Acutus, At 2.2 A
Resolution
Length = 197
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 25 SVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLR 82
SV +I+D + + AHE+GH LG HDG G C IM+ +
Sbjct: 121 SVGLIQDHSAIPLLMAVTMAHELGHNLGMNHDG-------AGCSCATC------IMAPVL 167
Query: 83 HTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
+ +S CS + FL CL N
Sbjct: 168 SSGPAKSFSDCSKHDYQSFLTIHKPQCLLN 197
>pdb|2DW0|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW0|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-1 Crystal)
pdb|2DW1|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW1|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-2 Crystal)
pdb|2DW2|A Chain A, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
pdb|2DW2|B Chain B, Crystal Structure Of Vap2 From Crotalus Atrox Venom (Form
2-5 Crystal)
Length = 419
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGII--VAAHEVGHLLGAVHDGSPPPTYLGG 64
AYVG C + S II+D + ++ + AHE+GH LG HD
Sbjct: 111 LAYVGSMCHPKR------STGIIQDYSEINLVVAVIMAHEMGHNLGINHDSG-----YCS 159
Query: 65 PGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL-PRV 123
G C IM E +S CS F+ C+ N P + + P V
Sbjct: 160 CGDYAC------IMRPEISPEPSTFFSNCSYFECWDFIMNHNPECILNEPLGTDIISPPV 213
Query: 124 LPGKLLSLDAQCRKDRGT 141
+LL + +C D GT
Sbjct: 214 CGNELLEVGEEC--DCGT 229
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
T GF+ VAAHE GH LG H P PTY
Sbjct: 103 TNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTY 136
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVH 53
+DT G + +VAAHE+GH LG H
Sbjct: 188 KDTTGTNLFLVAAHEIGHSLGLFH 211
>pdb|4DD8|A Chain A, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|B Chain B, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|C Chain C, Adam-8 Metalloproteinase Domain With Bound Batimastat
pdb|4DD8|D Chain D, Adam-8 Metalloproteinase Domain With Bound Batimastat
Length = 208
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 42 AHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGF-----IMSDLRHTEKGFKWSPCSVS 96
AHE+GH LG HD + CR ++ F IM+ + +S CS +
Sbjct: 138 AHEMGHNLGMDHD----------ENVQGCRCQERFEAGRCIMAGSIGSSFPRMFSDCSQA 187
Query: 97 SFHHFLNGDTATCLFNSP 114
FL + CL N+P
Sbjct: 188 YLESFLERPQSVCLANAP 205
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 100 KDTTGTNLFLVAAHEIGHSLGLFHSAN 126
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 100 KDTTGTNLFLVAAHEIGHSLGLFHSAN 126
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 106 KDTTGTNLFLVAAHEIGHSLGLFHSAN 132
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAHE+GH LG H +
Sbjct: 101 KDTTGTNLFLVAAHEIGHSLGLFHSAN 127
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVH 53
+DT G + +VAAHE+GH LG H
Sbjct: 101 KDTTGTNLFLVAAHEIGHSLGLFH 124
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVH 53
ED G + +VAAHE+GH LG H
Sbjct: 106 EDASGTNLFLVAAHELGHSLGLFH 129
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVH 53
ED G + +VAAHE+GH LG H
Sbjct: 106 EDASGTNLFLVAAHELGHSLGLFH 129
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ IVAAHE+GH LG H P
Sbjct: 110 GYNLFIVAAHELGHSLGLDHSKDP 133
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 34 GFSGIIVAAHEVGHLLGAVH 53
G I VAAHE+GHLLG H
Sbjct: 112 GIDLITVAAHEIGHLLGIEH 131
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 14 CVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSP 57
C + D G +S +VAAHE GH LG H P
Sbjct: 354 CATTSNFDSDKKWGFCPDQG-YSLFLVAAHEFGHALGLDHSSVP 396
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 34 GFSGIIVAAHEVGHLLGAVH 53
G I VAAHE+GHLLG H
Sbjct: 112 GIDLITVAAHEIGHLLGIEH 131
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGS 56
+DT G + +VAAH++GH LG H +
Sbjct: 103 KDTTGTNLFLVAAHQIGHSLGLFHSAN 129
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSP 57
ED G +VA HE+GH LG H P
Sbjct: 115 EDLNGNDIFLVAVHELGHALGLEHSSDP 142
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSP 57
ED G +VA HE+GH LG H P
Sbjct: 113 EDLNGNDIFLVAVHELGHALGLEHSSDP 140
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAH+ GH +G H P
Sbjct: 363 GYSLFLVAAHQFGHAMGLEHSQDP 386
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAHE GH LG H P
Sbjct: 112 GYSLFLVAAHEFGHALGLDHSSVP 135
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAHE GH +G H P
Sbjct: 106 GYSLFLVAAHEFGHAMGLEHSQDP 129
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 102 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|3P24|A Chain A, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|B Chain B, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|C Chain C, Structure Of Profragilysin-3 From Bacteroides Fragilis
pdb|3P24|D Chain D, Structure Of Profragilysin-3 From Bacteroides Fragilis
Length = 397
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 40 VAAHEVGHLLGAVHDGSP 57
V AHE+GH+LGA H P
Sbjct: 345 VMAHELGHILGANHADDP 362
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 102 SANYNLFLVAAHEFGHSLGLAHSSDP 127
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 108 SANYNLFLVAAHEFGHSLGLAHSSDP 133
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 113 GYNLFLVAAHEFGHSLGLDHSKDP 136
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 108 SANYNLFLVAAHEFGHSLGLAHSSDP 133
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G++ +VAAHE GH LG H P
Sbjct: 110 GYNLFLVAAHEFGHSLGLDHSKDP 133
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 107 SANYNLFLVAAHEFGHSLGLAHSSDP 132
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 103 SANYNLFLVAAHEFGHSLGLAHSSDP 128
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
5.0
Length = 197
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTY 61
T AYV C + SV +I+D + + I AHE+ H LG HD
Sbjct: 104 TIGLAYVASMCNPKR------SVGVIQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSC- 156
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
G + C IMS E +S CS +++ + C+ N
Sbjct: 157 ----GGKSC------IMSPSISDETIKYFSDCSYIQCRDYISKENPPCILN 197
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 92 PCSVSSFHHFLNGDTATCLFNSPHEDESLPRVLPGKLLS 130
PC V+ F GD A+ ++P DE+ L K++S
Sbjct: 91 PCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVIS 129
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAH+ GH LG H P
Sbjct: 112 GYSLFLVAAHQFGHALGLDHSSVP 135
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAH GH +G H P
Sbjct: 365 GYSLFLVAAHAFGHAMGLEHSQDP 388
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ +S +VAAHE GH +G H P
Sbjct: 109 SANYSLFLVAAHEFGHAMGLEHSQDP 134
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
+ ++ +VAAHE GH LG H P
Sbjct: 106 SANYNLFLVAAHEFGHSLGLAHSSDP 131
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAH+ GH LG H P
Sbjct: 108 GYSLFLVAAHQFGHALGLDHSSVP 131
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 24 NSVAIIEDTGGFSGIIVAAHEVGHLLGAVH 53
+ I D G + VAAHE GH+LG H
Sbjct: 100 DETWTIGDNQGTDLLQVAAHEFGHVLGLQH 129
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 97 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 130
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 104 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 137
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 103 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 136
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 103 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 136
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 102 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 96 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 129
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 102 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 102 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 135
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
7.5
Length = 197
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 19/111 (17%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTY 61
T AYV C + SV +I+D + + I AHE+ H LG HD
Sbjct: 104 TIGLAYVASMCNPKR------SVGVIQDHSSVNRLVAITLAHEMAHNLGVSHDEGSCSC- 156
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
G + C IMS E +S CS ++ + C+ N
Sbjct: 157 ----GGKSC------IMSPSISDETIKYFSDCSYIQCRDYIAKENPPCILN 197
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 109 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 142
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 108 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 141
>pdb|1W8W|A Chain A, Cbm29-2 Mutant Y46a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
pdb|1W8W|B Chain B, Cbm29-2 Mutant Y46a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
Length = 149
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKAGAVSLKRNSGSFRG 60
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTY 61
+GG + + A HE+GH LG H P PTY
Sbjct: 109 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTY 142
>pdb|1W8Z|A Chain A, Cbm29-2 Mutant K85a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
pdb|1W8Z|B Chain B, Cbm29-2 Mutant K85a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
Length = 149
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|1W9F|A Chain A, Cbm29-2 Mutant R112a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
pdb|1W9F|B Chain B, Cbm29-2 Mutant R112a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
Length = 149
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|1W8U|A Chain A, Cbm29-2 Mutant D83a Complexed With Mannohexaose: Probing
The Mechanism Of Ligand Recognition By Family 29
Carbohydrate Binding Modules
Length = 149
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|1W8T|A Chain A, Cbm29-2 Mutant K74a Complexed With Cellulohexaose:
Probing The Mechanism Of Ligand Recognition By Family
29 Carbohydrate Binding Modules
Length = 149
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|1GWL|A Chain A, Carbohydrate Binding Module Family29 Complexed With
Mannohexaose
pdb|1GWM|A Chain A, Carbohydrate Binding Module Family29 Complexed With
Glucohexaose
Length = 153
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|1OH3|A Chain A, E78r Mutant Of A Carbohydrate Binding Module Family 29
pdb|1OH3|B Chain B, E78r Mutant Of A Carbohydrate Binding Module Family 29
Length = 144
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 96 SSFHHFLNGDTATCLFNSPHEDESLPRVL 124
+ FHH++ G T T + SPH + LP+ L
Sbjct: 136 AEFHHYVGGPTETHVVRSPHPYQ-LPQAL 163
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 96 SSFHHFLNGDTATCLFNSPHEDESLPRVL 124
+ FHH++ G T T + SPH + LP+ L
Sbjct: 117 AEFHHYVGGPTETHVVRSPHPYQ-LPQAL 144
>pdb|1W90|A Chain A, Cbm29-2 Mutant D114a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
pdb|1W90|B Chain B, Cbm29-2 Mutant D114a: Probing The Mechanism Of Ligand
Recognition By Family 29 Carbohydrate Binding Modules
Length = 153
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP 57
G+S +VAAH GH +G H P
Sbjct: 111 GYSLFLVAAHAFGHAMGLEHSQDP 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,355,702
Number of Sequences: 62578
Number of extensions: 228631
Number of successful extensions: 553
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 116
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)