RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14250
(154 letters)
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 110 bits (276), Expect = 2e-30
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C + S ++IED G + A HE+GH+ HD + L
Sbjct: 117 TLGMADVGTVC------DPSRSCSVIEDDGLQAAFTTA-HELGHVFNMPHDDAKQCASLN 169
Query: 64 GPGAEKCRWEDGFIMSD-LRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPR 122
G + +M+ L + + WSPCS FL+ CL + P LP
Sbjct: 170 GVNQDSH------MMASMLSNLDHSQPWSPCSAYMITSFLDNGHGECLMDKPQNPIQLPG 223
Query: 123 VLPGKLLSLDAQCR 136
LPG + QC+
Sbjct: 224 DLPGTSYDANRQCQ 237
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 110 bits (276), Expect = 3e-30
Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C + S AI+ED G AAH++GH+ +HD S P L
Sbjct: 117 TLGMADVGTVC------DPARSCAIVEDDG-LQSAFTAAHQLGHVFNMLHDNSKPCISLN 169
Query: 64 GPGAEKCRWEDGFIMSD-LRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPR 122
GP + +M+ + H + WSPCS FL+ CL + P LP
Sbjct: 170 GPLSTS-----RHVMAPVMAHVDPEEPWSPCSARFITDFLDNGYGHCLLDKPEAPLHLPV 224
Query: 123 VLPGKLLSLDAQCRKDRGTSA 143
PGK D QC+ G +
Sbjct: 225 TFPGKDYDADRQCQLTFGPDS 245
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 103 bits (258), Expect = 3e-27
Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 12/142 (8%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C S A+IED G + VA HE+GHLLG HD S
Sbjct: 117 TLGMADVGTICSPE------RSCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETF 169
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRV 123
G +K + S L + WS C+ ++ FL+ CL + P + P
Sbjct: 170 GSTEDKR-----LMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQILGPEE 224
Query: 124 LPGKLLSLDAQCRKDRGTSACF 145
LPG+ QC G
Sbjct: 225 LPGQTYDATQQCNLTFGPEYSV 246
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 92.1 bits (229), Expect = 5e-24
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
T A VG C S A+IED G + VA HE+GHLLG HD S
Sbjct: 115 TLGMADVGTICSPE------RSCAVIEDDGLHAAFTVA-HEIGHLLGLSHDDSKFCEETF 167
Query: 64 GPGAEKCRWEDGFIMSD-LRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHED 117
G +K +MS L + WS C+ ++ FL+ CL + P +
Sbjct: 168 GSTEDKR------LMSSILTSIDASKPWSKCTSATITEFLDDGHGNCLLDLPRKQ 216
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat,
inflammation, alpha/beta motif, metalloproteinas
allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo
sapiens}
Length = 208
Score = 75.1 bits (185), Expect = 1e-17
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 20/113 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPP-TYL 62
A V C +S A+ +D G + + AHE+GH LG HD +
Sbjct: 109 ARVSAMC-------SHSSGAVNQDHSKNPVGVACTM--AHEMGHNLGMDHDENVQGCRCQ 159
Query: 63 GGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPH 115
A +C IM+ + +S CS + FL + CL N+P
Sbjct: 160 ERFEAGRC------IMAGSIGSSFPRMFSDCSQAYLESFLERPQSVCLANAPD 206
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase;
1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB:
1kui_A 1kuk_A 1kug_A 1wni_A
Length = 203
Score = 75.1 bits (185), Expect = 1e-17
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 24/111 (21%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
AYVG C SVA+++D + + HE+GH LG HD
Sbjct: 113 AYVGRMCDEKY------SVAVVKDHSSKVFMVAVTM--THELGHNLGMEHDDK------- 157
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+KC+ D IMS + ++ +S CS + FL D C+ N+P
Sbjct: 158 ----DKCK-CDTCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP 203
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG
MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB:
1r54_A*
Length = 214
Score = 74.3 bits (183), Expect = 2e-17
Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 19/115 (16%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
A V G C S + D G + + AHE+GH LG HD
Sbjct: 111 APVEGMCRAES------SGGVSTDHSELPIGAAATM--AHEIGHSLGLSHDPDGCCVEAA 162
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDE 118
C +M+ +S CS F CL N+P
Sbjct: 163 AESG-GC------VMAAATGHPFPRVFSACSRRQLRAFFRKGGGACLSNAPSGHH 210
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor
complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9
PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Length = 202
Score = 73.1 bits (180), Expect = 5e-17
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 23/111 (20%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
A +G C S+ I++D + AHE+GH LG HDG
Sbjct: 111 APLGTMCDPKL------SIGIVQDHSPINLLMGVTM--AHELGHNLGMEHDGKDC----- 157
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
IM + +++S S+ + FL C+ N P
Sbjct: 158 -----LRGA-SLCIMRPGLTKGRSYEFSDDSMHYYERFLKQYKPQCILNKP 202
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Length = 202
Score = 73.1 bits (180), Expect = 5e-17
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPP 59
A+VG C S II+D + ++ AHE+GH LG +HD
Sbjct: 106 VVGLAFVGTMCNAKY------SAGIIQDFSAIPLLMAVVM--AHELGHNLGMLHDDGY-- 155
Query: 60 TYLGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
C D IM+ ++ +S CS+ + FL+ + C+ N+
Sbjct: 156 ---------SCD-CDVCIMAPSLSSDPTKVFSNCSLILYEDFLSNEEPDCIDNAS 200
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex,
metal-binding, zinc-depending, metalloprotease,
metalloproteinase/inhibitor complex; HET: WR2; 1.05A
{Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A
3gbo_A
Length = 202
Score = 73.1 bits (180), Expect = 6e-17
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 21/114 (18%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVA---AHEVGHLLGAVHDGSPPPT 60
T AY GG C SV ++ D + + VA AHE+GH LG HD
Sbjct: 107 TIGRAYTGGMCDPRH------SVGVVRDHSK-NNLWVAVTMAHELGHNLGIHHDTGSCS- 158
Query: 61 YLGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
GA+ C IM+ + +++S CS + + +L C+ N P
Sbjct: 159 ----CGAKSC------IMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP 202
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin;
1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB:
1bsw_A
Length = 197
Score = 70.4 bits (173), Expect = 6e-16
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 23/109 (21%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPPTYLG 63
AYV C SV +I+D + + AHE+ H LG HD
Sbjct: 108 AYVASMCNPK------RSVGVIQDHSSVNRLVAITL--AHEMAHNLGVSHDEGSC----- 154
Query: 64 GPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
C IMS E +S CS +++ + C+ N
Sbjct: 155 -----SCG-GKSCIMSPSISDETIKYFSDCSYIQCRDYISKENPPCILN 197
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin,
snake venom proteinase; 2.20A {Deinagkistrodon acutus}
SCOP: d.92.1.9
Length = 197
Score = 68.9 bits (169), Expect = 2e-15
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 25/113 (22%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTG----GFSGIIVAAHEVGHLLGAVHDGSPPP 59
T AY+ C SV +I+D + + AHE+GH LG HDG
Sbjct: 106 TVGLAYLKTMCNSKY------SVGLIQDHSAIPLLMAVTM--AHELGHNLGMNHDG---- 153
Query: 60 TYLGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
C IM+ + + +S CS + FL CL N
Sbjct: 154 --------AGCS-CATCIMAPVLSSGPAKSFSDCSKHDYQSFLTIHKPQCLLN 197
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 63.5 bits (154), Expect = 1e-12
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTY 61
T ++ G C SV I+++ G F ++ AHE+ H LG HD
Sbjct: 110 TLGITFLAGMCQAY------RSVGIVQEQGNRNFKTAVIMAHELSHNLGMYHD------- 156
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL- 120
C + +MS + + +S CS+ + +L C+FN P + +
Sbjct: 157 ---GKNCICN-DSSCVMSPVLSDQPSKLFSNCSIHDYQRYLTRYKPKCIFNPPLRKDIVS 212
Query: 121 PRVLPGKLLSLDAQCRKDRGTSAC 144
P V ++ +C D G+ A
Sbjct: 213 PPVCGNEIWEEGEEC--DCGSPAN 234
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 62.3 bits (151), Expect = 2e-12
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 20/131 (15%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGP 65
Y+GG C S I++D + I AHE+GH LG HD
Sbjct: 121 GYLGGICNTMY------SAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCT-----C 169
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL-PRVL 124
G C +M+ E F +S CS FL + C+ P + + + P V
Sbjct: 170 GTRPC------VMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVC 223
Query: 125 PGKLLSLDAQC 135
+ + +C
Sbjct: 224 GNYFVEVGEEC 234
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 61.2 bits (148), Expect = 6e-12
Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTY 61
AYVG C S II+D ++ AHE+GH LG HD
Sbjct: 108 VIGLAYVGSMCHPK------RSTGIIQDYSEINLVVAVIMAHEMGHNLGINHD------- 154
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL- 120
G C + IM E +S CS F+ C+ N P + +
Sbjct: 155 ---SGYCSCG-DYACIMRPEISPEPSTFFSNCSYFECWDFIMNHNPECILNEPLGTDIIS 210
Query: 121 PRVLPGKLLSLDAQC 135
P V +LL + +C
Sbjct: 211 PPVCGNELLEVGEEC 225
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 60.8 bits (147), Expect = 7e-12
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 21/132 (15%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY+G C N SVAI++D + HE+GH LG HD
Sbjct: 114 AYIGSLCKTN------ESVAIVQDYNRRISLVASTITHELGHNLGIHHD----------K 157
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESL-PRVL 124
+ C ++ + T F++S CS+ + +L D C+ N P + + P +
Sbjct: 158 ASCICIPGPCIMLK--KRTAPAFQFSSCSIREYREYLLRDRPQCILNKPLSTDIVSPPIC 215
Query: 125 PGKLLSLDAQCR 136
+ + +C
Sbjct: 216 GNYFVEVGEECD 227
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A
{Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Length = 288
Score = 59.3 bits (143), Expect = 2e-11
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 10/113 (8%)
Query: 5 HSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGG 64
+ +N L + T + HE+GH GA HD
Sbjct: 158 YYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVT--THELGHNFGAEHDPDGLAEC--- 212
Query: 65 PGAEKCRWEDGFIMSDLR---HTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
A ++M + E +S CS S + + C
Sbjct: 213 --APNEDQGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTIESKAQECFQERS 263
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 58.3 bits (140), Expect = 6e-11
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPG 66
AY+GG C + + E + A + H +G + D + G
Sbjct: 110 AAYIGGIC------SLLKGGGVNEFGKTDLMAVTLAQSLAHNIGIISDKRKLAS-----G 158
Query: 67 AEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRVLPG 126
KC + K++ C++ +H FLN CLFN P + P
Sbjct: 159 ECKCEDTWSGCIMGDTGYYLPKKFTQCNIEEYHDFLNSGGGACLFNKPSKLLDPPEC-GN 217
Query: 127 KLLSLDAQCR 136
+ +C
Sbjct: 218 GFIETGEECD 227
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 57.0 bits (137), Expect = 2e-10
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY+G C S A+++D I AHE+GH LG HD
Sbjct: 119 AYIGSICNPK------TSAAVVQDYSSRTRMVAITMAHEMGHNLGMNHD----------R 162
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPHEDESLPRVLP 125
G C + + + F S CSV +L D C+ N P + + +
Sbjct: 163 GFCTCGFNKCVMSTRRTKPAYQF--SSCSVREHQRYLLRDRPQCILNKPLSTDIVSPPIC 220
Query: 126 G-KLLSLDAQCRKDRGT 141
G + + +C D G+
Sbjct: 221 GNYFVEVGEEC--DCGS 235
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A*
3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A*
3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A*
3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Length = 257
Score = 53.7 bits (128), Expect = 2e-09
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 39 IVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMS---DLRHTEKGFKWSPCSV 95
+V HE+GH GA HD ++M E +S CS
Sbjct: 184 LVTTHELGHNFGAEHDPDGLAECAPNED-----QGGKYVMYPIAVSGDHENNKMFSQCSK 238
Query: 96 SSFHHFLNGDTATCLFN 112
S + + C
Sbjct: 239 QSIYKTIESKAQECFQE 255
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 32.1 bits (72), Expect = 0.042
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLG-GPGAEKCRWED 74
+ G++ +VAAHE GH LG H P P Y G +D
Sbjct: 107 SSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDD 155
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 32.2 bits (72), Expect = 0.043
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPGAEK 69
DT G + +VAAHE+GH LG H + P Y +
Sbjct: 189 DTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR 231
>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A
{Bacteroides fragilis}
Length = 397
Score = 32.2 bits (72), Expect = 0.051
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 40 VAAHEVGHLLGAVHDGSP 57
V AHE+GH+LGA H P
Sbjct: 345 VMAHELGHILGANHADDP 362
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A
1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A*
1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A*
1ciz_A* ...
Length = 173
Score = 31.3 bits (70), Expect = 0.064
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPGAEK 69
DT G + +VAAHE+GH LG H + P Y +
Sbjct: 107 DTTGTNLFLVAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR 149
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 30.9 bits (69), Expect = 0.100
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGP 65
+ ++ VAAHE+GH LG H P+Y
Sbjct: 104 NNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFSG 143
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 30.9 bits (69), Expect = 0.12
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGG 64
A HE+GH LG H P PTY G
Sbjct: 118 AATHELGHSLGMGHSSDPNAVMYPTYGNG 146
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 29.8 bits (66), Expect = 0.24
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGG 64
VAAHE GH LG H P PTY
Sbjct: 111 VAAHEFGHALGLAHSTDPSALMYPTYKYK 139
>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase,
hydrolase; 1.00A {Streptomyces caespitosus} SCOP:
d.92.1.1 PDB: 1kuh_A
Length = 132
Score = 29.4 bits (65), Expect = 0.30
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYL---GGPGAE 68
+ + V AHE GH+LG P + L GGPG
Sbjct: 70 QQNQQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPGPS 111
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 29.3 bits (65), Expect = 0.32
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGGPG 66
VAAH GH +G H P P Y
Sbjct: 117 VAAHAFGHAMGLEHSQDPGALMAPIYTYTKN 147
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 29.3 bits (65), Expect = 0.35
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 2 PVTHSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPP--- 58
+ H+F L + + G I VAAHE+GHLLG H
Sbjct: 80 ILAHAFYPPPAGGNYAGHLHFDDDENWSINGSGIDLITVAAHEIGHLLGIEHSNVSSALM 139
Query: 59 -PTYLG 63
P Y G
Sbjct: 140 YPYYTG 145
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 29.5 bits (65), Expect = 0.35
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPG 66
+ G +VA HE+GH LG H P P Y
Sbjct: 111 NHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMET 150
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 29.8 bits (66), Expect = 0.36
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGGPGAE-----KCRWEDGFIMSDLRHTEKGFKW 90
VAAHE+GH LG H P+Y + + + S G +
Sbjct: 196 VAAHELGHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNPVQPIGPQT 255
Query: 91 SP--CSVSSFHHFLNGDTATCLFNSPH 115
S +F F
Sbjct: 256 PKACDSKLTFDAITTIRGEVMFFKDRF 282
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 29.5 bits (65), Expect = 0.37
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 113 SPHEDESLPRVLPGKLLSLDAQCRKDRGTSACFIRYVQTSIP 154
P P PG S + QCR G A + + +
Sbjct: 5 QPGSAGHPPDAQPGLYYSANEQCRVAFGPKAVACTFAREHLD 46
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on
PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 29.1 bits (64), Expect = 0.45
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLG 63
D G +VA HE+GH LG H P P Y
Sbjct: 116 DLNGNDIFLVAVHELGHALGLEHSSDPSAIMAPFYQW 152
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 29.0 bits (64), Expect = 0.49
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSP-----PPTYLGGPGAEKCRWED 74
++ +VAAHE GH LG H P P +D
Sbjct: 109 NYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDD 154
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV
collagenase) (92 kDa gelatinase)...; S1-prime pocket,
hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A
{Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A*
2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Length = 159
Score = 28.7 bits (63), Expect = 0.59
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPG 66
G+S +VAAH+ GH LG H P P Y G
Sbjct: 105 KGQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEG 144
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 28.3 bits (62), Expect = 0.72
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLG 63
D G + VAAHE GH+LG H + P Y
Sbjct: 107 DNQGTDLLQVAAHEFGHVLGLQHTTAAKALMSPFYTF 143
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 28.2 bits (62), Expect = 0.74
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGG 64
+GG + + A HE+GH LG H P PTY
Sbjct: 102 HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYV 139
>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP:
b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A
1om8_A 1omj_A 1h71_P
Length = 463
Score = 28.7 bits (63), Expect = 0.89
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVH-----DGSPPPTYLGGPGAE 68
G G HE+GH LG H G+ PTY AE
Sbjct: 158 GEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVYAE 199
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 28.3 bits (62), Expect = 1.1
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 39 IVAAHEVGHLLGAVHDGSPP----PTYLGGPGAEKCRWED 74
+VAAHE GH LG H P P Y G +D
Sbjct: 378 LVAAHEFGHALGLDHSSVPEALMYPMYRFTEGP-PLHKDD 416
>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A
{Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB:
1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P
Length = 479
Score = 27.9 bits (61), Expect = 1.3
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVH-----DGSPPPTYLGGPGAEKCRWEDGFIMSDLRHTE 85
+ + G HE+GH LG H G P+Y AE IMS E
Sbjct: 177 GSEEY-GRQTFTHEIGHALGLAHPGEYNAGEGDPSYNDAVYAED--SYQFSIMSFWGENE 233
Query: 86 KG 87
G
Sbjct: 234 TG 235
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 26.9 bits (59), Expect = 2.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 40 VAAHEVGHLLGAVH 53
A HE+GH+LG H
Sbjct: 117 EAVHEIGHVLGLKH 130
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex,
hydrolyse, matrix metalloproteinase, gelatinase A,
hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens}
SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1ks0_A 1cxw_A
Length = 421
Score = 27.2 bits (59), Expect = 2.6
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 35 FSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPGAE 68
+S +VAAH+ GH +G H P P Y
Sbjct: 364 YSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFR 401
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 27.2 bits (59), Expect = 2.7
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHTEKGFK 89
+GG + + A HE+GH LG H P ++ D +G +
Sbjct: 100 THSGGTNLFLTAVHEIGHSLGLGHSSDP-----KAVMFPTYKYVDINTFRLSADDIRGIQ 154
Query: 90 WSPCSVSSFHHFLNGDTATCLFNSPH 115
N D + P+
Sbjct: 155 SLYGDPKENQRLPNPDNSEPALCDPN 180
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain,
glucomannan, cellohexaose, mannohexaose, cellulosome;
HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19
PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A
1w8z_A 1w9f_A 1oh3_A*
Length = 153
Score = 26.6 bits (58), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 6 SFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG 37
+ +Y GGA ++N + K +V++ ++G F G
Sbjct: 29 TLSYYGGAMIINPQEGKYGAVSLKRNSGSFRG 60
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Length = 471
Score = 26.8 bits (58), Expect = 3.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 23 VNSVAIIEDTGGFSGIIVAAHEVGHLLGAVH-----DGSPPPTYLGGPGAE 68
VN + G HE+GH LG H G PTY AE
Sbjct: 156 VNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAE 206
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase
inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB:
3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Length = 564
Score = 26.2 bits (58), Expect = 4.8
Identities = 11/38 (28%), Positives = 11/38 (28%), Gaps = 7/38 (18%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVH----DGSPPPTYLGGP 65
TG I V HE GH A P Y
Sbjct: 345 TGTSGDIDVLTHEAGH---AFQVYESRHYEIPEYNWPT 379
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 25.9 bits (56), Expect = 7.1
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 40 VAAHEVGHLLGAVHDGSPPPTYLGGPGA 67
V H + H V + Y GA
Sbjct: 159 VVGHALAH---GVTESEAGLIYFQQAGA 183
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane,
transmembrane, virion, viral protein; HET: NAG; 2.60A
{Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A*
2rkc_A* 3inb_A*
Length = 481
Score = 26.0 bits (56), Expect = 7.4
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 43 HEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHTEKGF 88
+ V ++ G TYL + + +S R E G
Sbjct: 69 YNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGV 114
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.0 bits (57), Expect = 7.8
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 12/28 (42%)
Query: 45 VGHLLGA------------VHDGSPPPT 60
GH GA ++ G P
Sbjct: 1382 TGHPKGAAGAWMMNGALQILNSGIIPGN 1409
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 25.4 bits (55), Expect = 7.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 40 VAAHEVGHLLGAVH 53
HE+GH G H
Sbjct: 142 ELTHELGHTFGLGH 155
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed
beta-propeller FO immunoglobulin fold, beta-sandwich;
HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Length = 559
Score = 25.5 bits (55), Expect = 8.3
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 43 HEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHTEKGF 88
+ V ++ G TYL + + +S R E G
Sbjct: 34 YNVSSIVTMTSQGMYGGTYLVEKPNLSSKRSELSQLSMYRVFEVGV 79
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 25.6 bits (55), Expect = 9.1
Identities = 13/94 (13%), Positives = 16/94 (17%), Gaps = 17/94 (18%)
Query: 39 IVAAHEVGHLLGAVHDGSP----PPTYLGGPGAEK-------------CRWEDGFIMSDL 81
+VAAH GH +G H P P Y +
Sbjct: 370 LVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYGASPDIDLGTGPT 429
Query: 82 RHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSPH 115
F F
Sbjct: 430 PTLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRF 463
>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease;
1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6
PDB: 1jiw_P 1akl_A
Length = 479
Score = 25.3 bits (54), Expect = 9.4
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 24 NSVAIIEDTGGFSGIIVAAHEVGHLLGAVH-----DGSPPPTYLGGPGAE 68
+ A + G G HE+GH LG H G PTY AE
Sbjct: 166 SYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAE 215
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.443
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,451,299
Number of extensions: 139633
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 64
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)