RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14250
(154 letters)
>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu
(Trimeresurus mucrosquamatus), atrolysin E [TaxId:
103944]}
Length = 201
Score = 77.5 bits (190), Expect = 5e-19
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTY 61
T +AYVG C ++ SVA+++D F + HE+GH LG HD
Sbjct: 107 TIGWAYVGRMC------DEKYSVAVVKDHSSKVFMVAVTMTHELGHNLGMEHDD------ 154
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+KC+ D IMS + ++ +S CS + FL D C+ N+P
Sbjct: 155 -----KDKCKC-DTCIMSAVISDKQSKLFSDCSKDYYQTFLTNDNPQCILNAP 201
>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake
(Agkistrodon acutus), acutolysin A [TaxId: 36307]}
Length = 197
Score = 75.2 bits (184), Expect = 4e-18
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSG--IIVAAHEVGHLLGAVHDGSPPPTY 61
T AYV C SV +I+D + I AHE+ H LG HD
Sbjct: 104 TIGLAYVASMCNPK------RSVGVIQDHSSVNRLVAITLAHEMAHNLGVSHDE------ 151
Query: 62 LGGPGAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
G+ C + IMS E +S CS ++ + C+ N
Sbjct: 152 ----GSCSCGGK-SCIMSPSISDETIKYFSDCSYIQCRDYIAKENPPCILN 197
>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 74.4 bits (182), Expect = 8e-18
Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 15/109 (13%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGGFSGI--IVAAHEVGHLLGAVHDGSPPPTYLGGP 65
A V G C +S + D AHE+GH LG HD G
Sbjct: 107 APVEGMCRAE------SSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPD-------GC 153
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
E G +M+ +S CS F CL N+P
Sbjct: 154 CVEAAAESGGCVMAAATGHPFPRVFSACSRRQLRAFFRKGGGACLSNAP 202
>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese
five-pace snake (Agkistrodon acutus), acutolysin C
[TaxId: 36307]}
Length = 197
Score = 71.4 bits (174), Expect = 1e-16
Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTGG--FSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY+ C SV +I+D + AHE+GH LG HDG
Sbjct: 110 AYLKTMC------NSKYSVGLIQDHSAIPLLMAVTMAHELGHNLGMNHDG---------- 153
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFN 112
C IM+ + + +S CS + FL CL N
Sbjct: 154 --AGCSCAT-CIMAPVLSSGPAKSFSDCSKHDYQSFLTIHKPQCLLN 197
>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
diamonback rattlesnake (Crotalus atrox), atrolysin C
[TaxId: 8730]}
Length = 200
Score = 70.6 bits (172), Expect = 2e-16
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG--GFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
A +G C S+ I++D + AHE+GH LG HDG
Sbjct: 109 APLGTMCDPK------LSIGIVQDHSPINLLMGVTMAHELGHNLGMEHDG---------- 152
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
+ R IM + +++S S+ + FL C+ N P
Sbjct: 153 -KDCLRGASLCIMRPGLTKGRSYEFSDDSMHYYERFLKQYKPQCILNKP 200
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 70.2 bits (171), Expect = 3e-16
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 19/109 (17%)
Query: 8 AYVGGACVVNKRLEKVNSVAIIEDTG--GFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGP 65
AY GG C + +SV ++ D + AHE+GH LG HD
Sbjct: 111 AYTGGMC------DPRHSVGVVRDHSKNNLWVAVTMAHELGHNLGIDHDTG--------- 155
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATCLFNSP 114
IM+ + +++S CS + + +L C+ N P
Sbjct: 156 --SCSCGAKSCIMASVLSKVLSYEFSDCSQNQYETYLTNHNPQCILNKP 202
>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 61.8 bits (149), Expect = 6e-13
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 19/123 (15%)
Query: 4 THSFAYVGGAC------VVNKRLEKVNSVAIIEDTGGFSGI-----IVAAHEVGHLLGAV 52
+ GG C V K+ +NS G + + +V HE+GH GA
Sbjct: 136 SPRANSHGGVCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAE 195
Query: 53 HDGSPPPTYLGGPGAEKCRWEDGFIMSDL---RHTEKGFKWSPCSVSSFHHFLNGDTATC 109
HD ++M + E +S CS S + + C
Sbjct: 196 HDPDGLAECAPNED-----QGGKYVMYPIAVSGDHENNKMFSQCSKQSIYKTIESKAQEC 250
Query: 110 LFN 112
Sbjct: 251 FQE 253
>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 246
Score = 31.8 bits (71), Expect = 0.022
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 29 IEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGF---IMS 79
+ G G HE+GH LG H G A+ ED +MS
Sbjct: 162 VNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGDPTYADATYAEDTRAYSVMS 215
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 30.3 bits (67), Expect = 0.053
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGPG 66
+GG + + A HE+GH LG H P PTY
Sbjct: 102 SGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDI 140
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 30.3 bits (67), Expect = 0.060
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPP----P 59
+ A+ G + + + + G+S +VAAH+ GH LG H P P
Sbjct: 78 LLAHAFPPGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSVPEALMYP 137
Query: 60 TYLGGPGAE 68
Y G
Sbjct: 138 MYRFTEGPP 146
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.4 bits (65), Expect = 0.11
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGG 64
A HE+GH LG H P PTY G
Sbjct: 117 AATHELGHSLGMGHSSDPNAVMYPTYGNG 145
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 29.0 bits (64), Expect = 0.14
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPPP 59
+ G++ +VAAHE GH LG H P
Sbjct: 107 SSKGYNLFLVAAHEFGHSLGLDHSKDPGA 135
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 29.1 bits (64), Expect = 0.15
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSP 57
G + VAAHE GH+LG H +
Sbjct: 108 NQGTDLLQVAAHEFGHVLGLQHTTAA 133
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 29.1 bits (64), Expect = 0.15
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 40 VAAHEVGHLLGAVHDGSP 57
VAAHE+GH LG H
Sbjct: 109 VAAHELGHSLGLSHSTDI 126
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 28.3 bits (62), Expect = 0.25
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 40 VAAHEVGHLLGAVHDGSPP----PTYLGGPGAEK 69
VAAHE+GH LG H + P Y +
Sbjct: 116 VAAHEIGHSLGLFHSANTEALMYPLYHSLTDLTR 149
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 28.1 bits (61), Expect = 0.37
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPPPT 60
+ G +VA HE+GH LG H P
Sbjct: 111 NHDGNDLFLVAVHELGHALGLEHSNDPTAI 140
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 27.6 bits (60), Expect = 0.42
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 34 GFSGIIVAAHEVGHLLGAVHDGSPP----PTYLGGP 65
G+S +VAAHE GH +G H P P Y
Sbjct: 106 GYSLFLVAAHEFGHAMGLEHSQDPGALMAPIYTYTK 141
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 27.5 bits (60), Expect = 0.46
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 39 IVAAHEVGHLLGAVHDGSP-----PPTYLGGPGAEKCRWED 74
+VAAHE GH LG H P P +D
Sbjct: 114 LVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDD 154
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 27.5 bits (60), Expect = 0.65
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 1 MPVTHSFAYV---GGA--CVVNKRLEKVNSVAIIE---DTGGFSGIIVAAHEVGHLLGAV 52
+ + S+ YV GG C + L + V ++E + ++ A V +L
Sbjct: 21 LELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQED 80
Query: 53 HDGSPPPTYLGGPGAEKCRW 72
+P ++ G + R
Sbjct: 81 DGKTPVERFVSEDGIDNVRG 100
>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus
[TaxId: 53502]}
Length = 132
Score = 26.3 bits (58), Expect = 1.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 30 EDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYL---GGPG 66
+ + V AHE GH+LG P + L GGPG
Sbjct: 70 QQNQQYDSTRVTAHETGHVLGLPDHYQGPCSELMSGGGPG 109
>d3btaa2 b.42.4.2 (A:1079-1295) Botulinum neurotoxin {Clostridium
botulinum, serotype A [TaxId: 1491]}
Length = 217
Score = 26.4 bits (58), Expect = 1.2
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 7 FAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIV 40
A V EK+ S I D G S ++V
Sbjct: 115 ATNASQAGV-----EKILSALEIPDVGNLSQVVV 143
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 26.2 bits (57), Expect = 1.8
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 39 IVAAHEVGHLLGA--VHDGSP-------PPTYLGGPGAEKCRWEDGFIMS 79
I+A HE GH + + V +G P P Y ED +++S
Sbjct: 9 IIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTLHLPEEDKYLVS 58
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 25.9 bits (56), Expect = 1.9
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 39 IVAAHEVGH-LLGAVHDGSPPPT 60
+A HE GH L+G V D
Sbjct: 9 KIAIHEAGHALMGLVSDDDDKVH 31
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 25.7 bits (55), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSP 57
D G +VA HE+GH LG H P
Sbjct: 114 DLNGNDIFLVAVHELGHALGLEHSSDP 140
>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii
18 [TaxId: 306]}
Length = 242
Score = 25.6 bits (55), Expect = 2.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 34 GFSGIIVAAHEVGHLLGAVH-----DGSPPPTYLGGPGAEK 69
G G HE+GH LG H G+ PTY AE
Sbjct: 158 GNYGRQTLTHEIGHTLGLSHPGDYNAGNGNPTYRDAVYAED 198
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 26.0 bits (56), Expect = 2.7
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 32 TGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGFIMSDLRHTEKGFKW 90
T ++VA HE+GH+ + P G G +++ T K
Sbjct: 333 TVNLEDLVVAHHEMGHIQYFMQYKDLPVALREGANPG-FHEAIGDVLALSVSTPKHLHS 390
>d1bxya_ d.59.1.1 (A:) Prokaryotic ribosomal protein L30 {Thermus
thermophilus [TaxId: 274]}
Length = 60
Score = 23.7 bits (52), Expect = 3.7
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 19 RLEKVNSVAIIEDTGGFSGIIVAAHEVGHLL 49
L ++ ++EDT G + +V HL+
Sbjct: 27 GLRRLQQERVLEDTPAIRGNV---EKVAHLV 54
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 25.2 bits (54), Expect = 4.2
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 37 GIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEKCRWEDGF---IMS 79
G HE+GH LG H G A+ ED +MS
Sbjct: 167 GRQTFTHEIGHALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMS 212
>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish
(Astacus astacus) [TaxId: 6715]}
Length = 200
Score = 24.3 bits (52), Expect = 5.9
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 4 THSFAYVGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVH 53
+ ++YVG R+ V++ + + G I+ HE+ H +G H
Sbjct: 62 SGCWSYVG-------RISGAQQVSLQANGCVYHGTII--HELMHAIGFYH 102
>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 241
Score = 24.4 bits (52), Expect = 6.9
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 31 DTGGFSGIIVAAHEVGHLLGAVHDGSPP 58
G HE+GH LG H G
Sbjct: 159 PGSEEYGRQTFTHEIGHALGLAHPGEYN 186
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 175
Score = 23.6 bits (50), Expect = 9.7
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 14/81 (17%)
Query: 10 VGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLLGAVHDGSPPPTYLGGPGAEK 69
+GGA ++N RL G E G++
Sbjct: 13 IGGAMIINGRL--------------HRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNM 58
Query: 70 CRWEDGFIMSDLRHTEKGFKW 90
R+ K ++
Sbjct: 59 VRYVIEKSGHTDWDGRKIYQE 79
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 23.7 bits (50), Expect = 9.9
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 18/104 (17%)
Query: 10 VGGACVVNKRLEKVNSVAIIEDTGGFSGIIVAAHEVGHLL----GAVHDGSPPPTYLGGP 65
VGG V+N + +G E GH+ G P G
Sbjct: 17 VGGGLVLNGKP--------------ITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGC 62
Query: 66 GAEKCRWEDGFIMSDLRHTEKGFKWSPCSVSSFHHFLNGDTATC 109
G C + + S + + GD
Sbjct: 63 GQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQGDEQAH 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.443
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,341
Number of extensions: 27212
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 32
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)