BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14251
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
          Length = 379

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 4   DLKKGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMIW 63
           D+  G D+  +       R+   +A+  TD+  Y+      PVYD+A    K    G  W
Sbjct: 243 DIGHGTDSFNFHVAETALREGXKAASISTDI--YIRNRENGPVYDLATTXEKLRVVGYDW 300

Query: 64  ----------LSNQFHLTSGNTL 76
                      +  FHLT   TL
Sbjct: 301 PEIIEKVTKAPAENFHLTQKGTL 323


>pdb|2EHG|A Chain A, Crystal Structure Of Hyperthermophilic Archaeal Rnase Hi
          Length = 149

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 26  DSAAALTDM-GKYLFRERRL-PVYDIAVAVTKKERSGMIWLSNQ 67
           DS   +  M G+Y  + +R+ P+Y+ A+ + KK  + +IW+  +
Sbjct: 76  DSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPRE 119


>pdb|3ALY|A Chain A, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
           With C-Terminal Deletion
 pdb|3ALY|B Chain B, Crystal Structure Of Rnase Hi From Sulfolobus Tokodaii
           With C-Terminal Deletion
          Length = 143

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 26  DSAAALTDM-GKYLFRERRL-PVYDIAVAVTKKERSGMIWLSNQ 67
           DS   +  M G+Y  + +R+ P+Y+ A+ + KK  + +IW+  +
Sbjct: 76  DSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPRE 119


>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The
          Fushi Tarazu Homeodomain From Drosophila And Comparison
          With The Antennapedia Homeodomain
          Length = 70

 Score = 26.2 bits (56), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 34 MGKYLFRERRLPVYDIAVAVTKKERSGMIWLSNQ 67
            +Y+ R RR+   DIA A++  ER   IW  N+
Sbjct: 24 FNRYITRRRRI---DIANALSLSERQIKIWFQNR 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,253,036
Number of Sequences: 62578
Number of extensions: 70414
Number of successful extensions: 157
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 4
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)