Query psy14251
Match_columns 76
No_of_seqs 6 out of 8
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 23:13:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b8z_A Protein adamts-5; alpha 80.5 0.98 3.4E-05 29.9 2.3 33 26-60 70-109 (217)
2 2v4b_A Adamts-1; zymogen, prot 75.5 2.3 7.9E-05 29.5 3.1 33 26-60 72-111 (300)
3 2rjq_A Adamts-5; metalloprotea 74.9 2.2 7.4E-05 30.6 2.9 34 25-60 71-111 (378)
4 2rjp_A Adamts-4; metalloprotea 68.6 4.4 0.00015 28.4 3.2 33 26-60 72-111 (316)
5 1yp1_A FII; FII hydrolase; 1.9 61.5 5.4 0.00019 26.1 2.5 32 26-59 69-103 (202)
6 1bud_A Protein (acutolysin A); 59.4 6.3 0.00021 25.6 2.5 32 26-59 67-101 (197)
7 3g5c_A ADAM 22; alpha/beta fol 59.1 8.2 0.00028 30.1 3.5 33 26-60 72-105 (510)
8 2w15_A Zinc metalloproteinase 58.8 7.7 0.00026 25.3 2.8 32 26-59 70-104 (202)
9 1qua_A Acutolysin-C, hemorrhag 55.2 5.7 0.0002 25.8 1.8 32 26-59 69-103 (197)
10 1r55_A ADAM 33; metalloproteas 53.7 4.9 0.00017 26.6 1.3 33 26-60 71-105 (214)
11 4dd8_A Disintegrin and metallo 52.4 10 0.00036 24.9 2.7 33 26-60 68-103 (208)
12 1atl_A Atrolysin C; metalloend 47.4 9 0.00031 25.0 1.8 31 26-58 70-103 (202)
13 1kuf_A Atrolysin E, metallopro 44.7 11 0.00038 24.7 1.9 32 26-59 72-106 (203)
14 4fxe_A Antitoxin RELB; toxin/a 38.5 19 0.00066 21.8 2.1 22 25-46 25-46 (79)
15 1e8c_A UDP-N-acetylmuramoylala 36.3 21 0.0007 26.2 2.4 28 26-55 88-117 (498)
16 2ero_A VAP-1, vascular apoptos 35.8 19 0.00065 26.7 2.1 33 26-60 80-115 (427)
17 2ciw_A Chloroperoxidase; oxido 33.5 16 0.00056 27.4 1.4 14 32-45 208-221 (299)
18 2e3x_A Coagulation factor X-ac 32.5 21 0.00072 26.5 1.9 32 26-59 73-107 (427)
19 4gcn_A Protein STI-1; structur 32.3 6.2 0.00021 22.5 -0.8 30 24-53 4-37 (127)
20 3k7l_A Atragin; SVMP, metallop 31.6 31 0.001 25.9 2.7 33 26-60 78-113 (422)
21 4fo9_A E3 SUMO-protein ligase 28.8 27 0.00091 26.8 1.9 32 41-72 20-57 (360)
22 2dyk_A GTP-binding protein; GT 28.1 30 0.001 19.4 1.6 19 40-61 105-123 (161)
23 3k7n_A K-like; SVMP, hydrolase 25.5 47 0.0016 24.6 2.7 32 26-59 73-107 (397)
24 2kpa_A ARNO(375-400); hydrolas 25.4 7.7 0.00026 20.4 -1.1 10 43-52 3-12 (26)
25 1gg4_A UDP-N-acetylmuramoylala 24.0 48 0.0016 23.9 2.5 28 26-55 82-109 (452)
26 1r8s_A ADP-ribosylation factor 23.8 80 0.0027 17.7 3.0 14 48-61 103-116 (164)
27 1kao_A RAP2A; GTP-binding prot 23.6 1E+02 0.0035 17.0 3.3 16 43-61 108-123 (167)
28 1ksh_A ARF-like protein 2; sma 22.9 82 0.0028 18.3 3.0 14 48-61 121-134 (186)
29 3t1o_A Gliding protein MGLA; G 22.8 1E+02 0.0036 17.6 3.4 30 29-61 117-150 (198)
30 1moz_A ARL1, ADP-ribosylation 22.2 92 0.0032 17.8 3.1 14 48-61 121-134 (183)
31 2am1_A SP protein, UDP-N-acety 21.3 53 0.0018 23.6 2.2 28 26-55 82-109 (454)
32 2cxx_A Probable GTP-binding pr 20.8 58 0.002 18.8 2.0 18 41-61 120-137 (190)
33 2dw0_A Catrocollastatin; apopt 20.7 42 0.0014 24.9 1.6 32 26-59 72-106 (419)
34 1upt_A ARL1, ADP-ribosylation 20.5 86 0.0029 17.6 2.6 13 49-61 111-123 (171)
35 2wtz_A UDP-N-acetylmuramoyl-L- 20.2 52 0.0018 24.5 2.1 28 26-55 126-155 (535)
No 1
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=80.50 E-value=0.98 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=26.2
Q ss_pred chhHHHHHhhhhhhhhcCC------c-ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRL------P-VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~Rl------P-~YDiAia~T~lDmc~ 60 (76)
|++..|...++| |++.+ | -+|+|+.+|..|.|+
T Consensus 70 ~~~~~L~~F~~w--~~~~~~~~~~~~~~~D~a~LlT~~~~~~ 109 (217)
T 3b8z_A 70 NAATTLKNFCKW--QHQHNQLGDDHEEHYDAAILFTREDLCG 109 (217)
T ss_dssp BHHHHHHHHHHH--HHHHSCSSTTSTTCCSEEEEEESSCCBC
T ss_pred CHHHHHHHHHHH--HHhccccccccCCCCceEEEEecccccC
Confidence 678899999986 44433 2 499999999999985
No 2
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=75.50 E-value=2.3 Score=29.49 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=26.2
Q ss_pred chhHHHHHhhhhhhhhcCCc-------ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP-------VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP-------~YDiAia~T~lDmc~ 60 (76)
|++..|...++| |++.++ -+|+|+.+|..|+|+
T Consensus 72 ~~~~tL~~F~~w--~~~~~~~~~~~~~~~D~a~LlT~~~~~~ 111 (300)
T 2v4b_A 72 NAALTLRNFCNW--QKQHNPPSDRDAEHYDTAILFTRQDLCG 111 (300)
T ss_dssp BHHHHHHHHHHH--HGGGSCSCTTSTTCCSEEEEEESSCCBC
T ss_pred CHHHHHHHHHHH--HhhccccccccCCccCEEEEeecccccC
Confidence 678889999986 444332 499999999999975
No 3
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=74.91 E-value=2.2 Score=30.57 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=26.5
Q ss_pred hchhHHHHHhhhhhhhhcCCc-------ceeeeeeeeeccccc
Q psy14251 25 IDSAAALTDMGKYLFRERRLP-------VYDIAVAVTKKERSG 60 (76)
Q Consensus 25 iDa~~AL~~Mg~YlyRE~RlP-------~YDiAia~T~lDmc~ 60 (76)
-|++..|....+| |++.++ -+|+|+.+|..|+|+
T Consensus 71 ~~~~~~L~~F~~w--~~~~~~~~~~~~~~~D~a~LlT~~~~~~ 111 (378)
T 2rjq_A 71 KNAATTLKNFCKW--QHQHNQLGDDHEEHYDAAILFTREDLCG 111 (378)
T ss_dssp SBHHHHHHHHHHH--HHHTTCSCSSSTTCCSEEEEEECSCCBC
T ss_pred CCHHHHHHHHHHH--HHhccccccccCCCCCEEEEeecccccc
Confidence 3778899999886 444332 499999999999975
No 4
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=68.61 E-value=4.4 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=26.7
Q ss_pred chhHHHHHhhhhhhhhcCCc-------ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP-------VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP-------~YDiAia~T~lDmc~ 60 (76)
|++..|...++| |++.++ -+|+|+.+|..|+|+
T Consensus 72 ~~~~~L~~F~~w--~~~~l~~~~~~~~~~D~a~LlT~~~~~~ 111 (316)
T 2rjp_A 72 SAAQTLRSFCAW--QRGLNTPEDSDPDHFDTAILFTRQDLCG 111 (316)
T ss_dssp BHHHHHHHHHHH--HTTTCCSCSSSTTCCSEEEEEECSCCBC
T ss_pred CHHHHHHHHHHH--HHhccccccccCCCcceEEEEecccccC
Confidence 788899999986 444432 699999999999985
No 5
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=61.49 E-value=5.4 Score=26.12 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=25.9
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|...++| |++.+. -+|+|+.+|..|.+
T Consensus 69 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~Llt~~~~~ 103 (202)
T 1yp1_A 69 AGDLTLSLFADW--RQTLLLSRILNDNAQLQTAVDFR 103 (202)
T ss_dssp CHHHHHHHHHHH--HHHTGGGTCCCSEEEEEECCCCS
T ss_pred CHHHHHHHHHHH--HHhcccccCCCcceeeEEeccCC
Confidence 778889999887 555543 58999999999985
No 6
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=59.38 E-value=6.3 Score=25.62 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.6
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|...++| |++.+. -+|+|+.+|..|.|
T Consensus 67 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~Llt~~~~~ 101 (197)
T 1bud_A 67 SAGNTLKSFGEW--RAKDLIHRISHDNAQLLTATDFD 101 (197)
T ss_dssp CHHHHHHHHHHH--HHHTGGGTSCCSEEEEEECCCCS
T ss_pred CHHHHHHHHHHH--HHhhcccccCCCHhheEeecccC
Confidence 678889998886 555542 68999999999984
No 7
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=59.15 E-value=8.2 Score=30.08 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=26.3
Q ss_pred chhHHHHHhhhhhhhhcCCc-ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP-VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP-~YDiAia~T~lDmc~ 60 (76)
|++..|+.+.+|- +..++ -+|+|+-+|..|+++
T Consensus 72 ~~~~tL~~F~~Wr--~~~l~~~hD~A~LlT~~d~~~ 105 (510)
T 3g5c_A 72 NPLITLREFMKYR--RDFIKEKSDAVHLFSGSQFES 105 (510)
T ss_dssp SHHHHHHHHHHHH--HHTCCSCCSEEEEEESSCCSS
T ss_pred cHHHHHHHHHHHH--HhhcCCCCceEEEeeecccCC
Confidence 7788899999874 43333 499999999999885
No 8
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=58.81 E-value=7.7 Score=25.30 Aligned_cols=32 Identities=34% Similarity=0.390 Sum_probs=25.7
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|...++| |++.+. -+|+|+.+|..|.+
T Consensus 70 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~Llt~~~~~ 104 (202)
T 2w15_A 70 DSSKTLKSFGEW--RERDLLPRISHDHAQLLTAVVFD 104 (202)
T ss_dssp SHHHHHHHHHHH--HHHTTTTTSCCSEEEEEECCCCG
T ss_pred CHHHHHHHHHHH--HhhcccCcCCCCcEEEEeeccCC
Confidence 778889998885 666553 68999999999984
No 9
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=55.24 E-value=5.7 Score=25.82 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=25.5
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|...++| |++.+. -+|+|+.+|..|.+
T Consensus 69 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~Llt~~~~~ 103 (197)
T 1qua_A 69 SSRNTLKLFASW--RETDLLKRTSNDNAQLLTATNFN 103 (197)
T ss_dssp SHHHHHHHHHHH--HHHTHHHHSCCSEEEEEECCCCS
T ss_pred CHHHHHHHHHHH--hhhcccccCCCCcEEEEeecccC
Confidence 678889999887 555442 58999999999974
No 10
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=53.74 E-value=4.9 Score=26.64 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=25.5
Q ss_pred chhHHHHHhhhhhhhhcCCc--ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP--VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP--~YDiAia~T~lDmc~ 60 (76)
|++..|...++|- ++.+| -+|+|+.+|..|.|+
T Consensus 71 ~~~~tL~~F~~w~--~~~~~~~~~D~a~LlT~~~~~~ 105 (214)
T 1r55_A 71 DANATLWAFLQWR--RGLWAQRPHDSAQLLTGRAFQG 105 (214)
T ss_dssp CHHHHHHHHHHHH--HHHHHHSCCSEEEEEESCCCGG
T ss_pred CHHHHHHHHHHHH--HHhcCCCCCceeEEEEecccCC
Confidence 6788899998874 33333 599999999999873
No 11
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=52.36 E-value=10 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.6
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc~ 60 (76)
|++..|....+| |+..+. -+|+|+-+|..|+|+
T Consensus 68 ~~~~tL~~F~~w--~~~~l~~~~~~D~a~LlT~~d~~~ 103 (208)
T 4dd8_A 68 DPSVTLENLLTW--QARQRTRRHLHDNVQLITGVDFTG 103 (208)
T ss_dssp SHHHHHHHHHHH--HHC----CCCCSEEEEEECSCCST
T ss_pred CHHHHHHHHHHH--HHHhcccccCCCeeEEEEecccCC
Confidence 778889999886 443332 489999999999864
No 12
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=47.40 E-value=9 Score=25.04 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=25.3
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeeccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKER 58 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDm 58 (76)
|++..|...++| |++.+. -+|+|+.+|..|.
T Consensus 70 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~LlT~~~~ 103 (202)
T 1atl_A 70 ASSDTLNAFAEW--RETDLLNRKSHDNAQLLTAIEL 103 (202)
T ss_dssp SHHHHHHHHHHH--HHHTHHHHSCCSEEEEEECSCC
T ss_pred CHHHHHHHHHHH--HHhccCCCCCCCcEEEEeccCC
Confidence 778889999886 665553 6899999999998
No 13
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=44.68 E-value=11 Score=24.68 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.5
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|...++| |++.+. -+|+|+.+|..|.+
T Consensus 72 ~~~~~L~~F~~w--~~~~l~~~~~~D~a~LlT~~~~~ 106 (203)
T 1kuf_A 72 DAPTTAGLFGDW--RERVLLKKKNHDHAQLLTDTNFA 106 (203)
T ss_dssp CHHHHHHHHHHH--HHHTHHHHSCCSEEEEEECCCCG
T ss_pred CHHHHHHHHHHH--HHhcccccCCCCceeeEeccccC
Confidence 678889999886 555543 58999999999983
No 14
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=38.51 E-value=19 Score=21.75 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=18.6
Q ss_pred hchhHHHHHhhhhhhhhcCCcc
Q psy14251 25 IDSAAALTDMGKYLFRERRLPV 46 (76)
Q Consensus 25 iDa~~AL~~Mg~YlyRE~RlP~ 46 (76)
++-.-|++-.-+|.=+|.++||
T Consensus 25 l~~s~Ai~~fl~~v~~~~~iPF 46 (79)
T 4fxe_A 25 VTPSEALRLMLEYIADNERLPF 46 (79)
T ss_dssp CCHHHHHHHHHHHHHHHSSCSS
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 4556688888899999999998
No 15
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=36.34 E-value=21 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=21.5
Q ss_pred chhHHHHHhhhhhhh--hcCCcceeeeeeeee
Q psy14251 26 DSAAALTDMGKYLFR--ERRLPVYDIAVAVTK 55 (76)
Q Consensus 26 Da~~AL~~Mg~YlyR--E~RlP~YDiAia~T~ 55 (76)
|.-+||..+++++|. +.++|+ |+|+-|+
T Consensus 88 d~~~aL~~la~~~~~~p~~~~~v--I~VTGTn 117 (498)
T 1e8c_A 88 QLNERLSALAGRFYHEPSDNLRL--VGVTGTN 117 (498)
T ss_dssp THHHHHHHHHHHHTTCGGGSSEE--EEEESSS
T ss_pred CHHHHHHHHHHHHhCCCcccCeE--EEEeCCc
Confidence 567899999999987 456665 7777764
No 16
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=35.82 E-value=19 Score=26.70 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=25.7
Q ss_pred chhHHHHHhhhhhhhhcCC-c--ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRL-P--VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~Rl-P--~YDiAia~T~lDmc~ 60 (76)
|++..|..+++| |++.| + -+|+|+.+|..|+++
T Consensus 80 ~~~~tL~~F~~w--~~~~l~~~~~~D~a~LlT~~df~g 115 (427)
T 2ero_A 80 SADVTLDLFAKW--RATDLLSRKSHDNAQLLTGINFNG 115 (427)
T ss_dssp CHHHHHHHHHHH--HHHHTTTTCCCSEEEEEECSCCSS
T ss_pred CHHHHHHHHHHH--HhhhcccccCCCeeeEEEeeccCC
Confidence 677889988876 55444 2 699999999999764
No 17
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=33.54 E-value=16 Score=27.36 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=11.8
Q ss_pred HHhhhhhhhhcCCc
Q psy14251 32 TDMGKYLFRERRLP 45 (76)
Q Consensus 32 ~~Mg~YlyRE~RlP 45 (76)
.+.-|+||.|+|||
T Consensus 208 ~d~vr~fF~eERLP 221 (299)
T 2ciw_A 208 IDWWKYWFTNESFP 221 (299)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHHhcccCC
Confidence 34568999999999
No 18
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=32.50 E-value=21 Score=26.54 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=25.3
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|..+.+| |++.|. -+|+|+.+|..|++
T Consensus 73 ~~~~tL~~F~~w--r~~~l~~~~~~D~A~LlT~~df~ 107 (427)
T 2e3x_A 73 SADETLNSFGEW--RASDLMTRKSHDNALLFTDMRFD 107 (427)
T ss_dssp CHHHHHHHHHHH--HHHTHHHHSCCSEEEEEECCCCG
T ss_pred CHHHHHHHHHHH--HHhhccccCCCCeEEEEEeccCC
Confidence 678889998875 555442 68999999999986
No 19
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=32.33 E-value=6.2 Score=22.48 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=23.7
Q ss_pred hhchhHHHHHhhhhhhhhcCCc----ceeeeeee
Q psy14251 24 AIDSAAALTDMGKYLFRERRLP----VYDIAVAV 53 (76)
Q Consensus 24 ~iDa~~AL~~Mg~YlyRE~RlP----~YDiAia~ 53 (76)
+-|++.|.+++|.-+|+..++. .|.-||.+
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~ 37 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578889999999999998876 66666544
No 20
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=31.55 E-value=31 Score=25.89 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=25.9
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeeccccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERSG 60 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc~ 60 (76)
|++..|....+| |++.|+ -+|+|+.+|..|+++
T Consensus 78 ~~~~tL~~F~~W--r~~~l~~~~~hD~A~LlT~~d~~~ 113 (422)
T 3k7l_A 78 DVRATLNLFGEW--REKKLLPRKRNDNAQLLTGIDFNG 113 (422)
T ss_dssp SHHHHHHHHHHH--HHHTTGGGCCCSEEEEEECSCCSS
T ss_pred cHHHHHHHHHHH--HHhhcccccCCCeeeeeecccccc
Confidence 778889999875 555553 589999999999753
No 21
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=28.75 E-value=27 Score=26.79 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=19.1
Q ss_pred hcCCcceeeeee---eeecccccceE---eccceeecc
Q psy14251 41 ERRLPVYDIAVA---VTKKERSGMIW---LSNQFHLTS 72 (76)
Q Consensus 41 E~RlP~YDiAia---~T~lDmc~m~~---~s~~~~~~~ 72 (76)
=.+|||||+.=. -|.|..++... .+=-||||.
T Consensus 20 ~k~lPFy~v~~~l~~Pt~L~~~~~~~~~~~~f~f~lt~ 57 (360)
T 4fo9_A 20 LKNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTP 57 (360)
T ss_dssp BCCCTTEEEEEEEEEEEECCCCSSCSEEEEEEEECCCH
T ss_pred ecCCCchHhHhhhcCceecccccCcccccceeEEEcCH
Confidence 358999998544 45676665432 233466653
No 22
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=28.15 E-value=30 Score=19.41 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=14.5
Q ss_pred hhcCCcceeeeeeeeecccccc
Q psy14251 40 RERRLPVYDIAVAVTKKERSGM 61 (76)
Q Consensus 40 RE~RlP~YDiAia~T~lDmc~m 61 (76)
++...| +.+++||.|+...
T Consensus 105 ~~~~~p---~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 105 RRKGKP---VILVATKVDDPKH 123 (161)
T ss_dssp HHHTCC---EEEEEECCCSGGG
T ss_pred HhcCCC---EEEEEECcccccc
Confidence 445677 6799999999764
No 23
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=25.48 E-value=47 Score=24.61 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=25.1
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|....+| |+..|. -+|+|+.+|..|++
T Consensus 73 ~~~~tL~~F~~W--r~~~l~~~~~hD~A~LlT~~d~~ 107 (397)
T 3k7n_A 73 AASVTLKSFGEW--RETVLLPRKRNDNAQLLTGIDFN 107 (397)
T ss_dssp SHHHHHHHHHHH--HHHTTTTTSCCSEEEEEECSCCS
T ss_pred CHHHHHHHHHHH--HHhhcccccCCCeeeEEeccccC
Confidence 678889998875 555443 58999999999975
No 24
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=25.37 E-value=7.7 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=7.0
Q ss_pred CCcceeeeee
Q psy14251 43 RLPVYDIAVA 52 (76)
Q Consensus 43 RlP~YDiAia 52 (76)
+=|||||.-+
T Consensus 3 ~dPFYdml~~ 12 (26)
T 2kpa_A 3 VDPFYEMLAA 12 (26)
T ss_dssp SHHHHHHHTC
T ss_pred cchHHHHHHH
Confidence 4589998543
No 25
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=23.95 E-value=48 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=21.8
Q ss_pred chhHHHHHhhhhhhhhcCCcceeeeeeeee
Q psy14251 26 DSAAALTDMGKYLFRERRLPVYDIAVAVTK 55 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP~YDiAia~T~ 55 (76)
|.-++|..+|.++++..++|+ |+|+-|+
T Consensus 82 ~~~~~l~~la~~~~~~~~~~v--I~VTGTn 109 (452)
T 1gg4_A 82 DTRLAFGELAAWVRQQVPARV--VALTGSS 109 (452)
T ss_dssp CHHHHHHHHHHHHHHHSCCEE--EEEECSS
T ss_pred CHHHHHHHHHHHHhcCCCCCE--EEEeCCC
Confidence 577899999999887666665 7777764
No 26
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=23.77 E-value=80 Score=17.68 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=11.5
Q ss_pred eeeeeeeecccccc
Q psy14251 48 DIAVAVTKKERSGM 61 (76)
Q Consensus 48 DiAia~T~lDmc~m 61 (76)
-+.+++||.|+.+.
T Consensus 103 piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 103 VLLVFANKQDLPNA 116 (164)
T ss_dssp EEEEEEECTTSTTC
T ss_pred eEEEEEECcCCcCC
Confidence 46899999999764
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=23.60 E-value=1e+02 Score=16.98 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=12.3
Q ss_pred CCcceeeeeeeeecccccc
Q psy14251 43 RLPVYDIAVAVTKKERSGM 61 (76)
Q Consensus 43 RlP~YDiAia~T~lDmc~m 61 (76)
..| +.|++||.|+...
T Consensus 108 ~~p---iilv~nK~Dl~~~ 123 (167)
T 1kao_A 108 KVP---VILVGNKVDLESE 123 (167)
T ss_dssp CCC---EEEEEECGGGGGG
T ss_pred CCC---EEEEEECCccccc
Confidence 455 6799999998653
No 28
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=22.85 E-value=82 Score=18.28 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=11.5
Q ss_pred eeeeeeeecccccc
Q psy14251 48 DIAVAVTKKERSGM 61 (76)
Q Consensus 48 DiAia~T~lDmc~m 61 (76)
-+.|++||.|+.+.
T Consensus 121 piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 121 TLLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEECTTSTTC
T ss_pred cEEEEEeCccCCCC
Confidence 36899999999764
No 29
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=22.81 E-value=1e+02 Score=17.60 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=19.1
Q ss_pred HHHHHhhhhhhhh----cCCcceeeeeeeeecccccc
Q psy14251 29 AALTDMGKYLFRE----RRLPVYDIAVAVTKKERSGM 61 (76)
Q Consensus 29 ~AL~~Mg~YlyRE----~RlP~YDiAia~T~lDmc~m 61 (76)
..+..+-+++-.- ...| |.|+.+|.|+.+.
T Consensus 117 ~s~~~l~~~l~~~~~~~~~~p---iilv~NK~Dl~~~ 150 (198)
T 3t1o_A 117 ESMRNMRENLAEYGLTLDDVP---IVIQVNKRDLPDA 150 (198)
T ss_dssp HHHHHHHHHHHHTTCCTTSSC---EEEEEECTTSTTC
T ss_pred HHHHHHHHHHHhhccccCCCC---EEEEEEchhcccc
Confidence 4555555554432 3444 6799999998764
No 30
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=22.16 E-value=92 Score=17.83 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=11.6
Q ss_pred eeeeeeeecccccc
Q psy14251 48 DIAVAVTKKERSGM 61 (76)
Q Consensus 48 DiAia~T~lDmc~m 61 (76)
-+.|+++|.|+.+.
T Consensus 121 piilv~nK~Dl~~~ 134 (183)
T 1moz_A 121 ALLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEECTTSTTC
T ss_pred eEEEEEECCCCCCC
Confidence 37899999999764
No 31
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=21.31 E-value=53 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=21.4
Q ss_pred chhHHHHHhhhhhhhhcCCcceeeeeeeee
Q psy14251 26 DSAAALTDMGKYLFRERRLPVYDIAVAVTK 55 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP~YDiAia~T~ 55 (76)
|.-+||..++.+++..-++|+ |+|+-|+
T Consensus 82 ~~~~al~~la~~~~~~~~~~v--I~VTGTn 109 (454)
T 2am1_A 82 DVLTAFQSLASYYLEKTTVDV--FAVTGSN 109 (454)
T ss_dssp CHHHHHHHHHHHHHHHHCCEE--EEEECCC
T ss_pred CHHHHHHHHHHHHhhCCCCCE--EEEeCCC
Confidence 477899999998886556775 6777764
No 32
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=20.77 E-value=58 Score=18.76 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=13.7
Q ss_pred hcCCcceeeeeeeeecccccc
Q psy14251 41 ERRLPVYDIAVAVTKKERSGM 61 (76)
Q Consensus 41 E~RlP~YDiAia~T~lDmc~m 61 (76)
+...| +.+++||.|+...
T Consensus 120 ~~~~p---iilv~nK~Dl~~~ 137 (190)
T 2cxx_A 120 ELDIP---TIVAVNKLDKIKN 137 (190)
T ss_dssp HTTCC---EEEEEECGGGCSC
T ss_pred hcCCc---eEEEeehHhccCc
Confidence 44677 5899999999653
No 33
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=20.70 E-value=42 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=25.0
Q ss_pred chhHHHHHhhhhhhhhcCCc---ceeeeeeeeecccc
Q psy14251 26 DSAAALTDMGKYLFRERRLP---VYDIAVAVTKKERS 59 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~RlP---~YDiAia~T~lDmc 59 (76)
|++..|..+.+| |++.|. -+|+|+.+|..|..
T Consensus 72 ~~~~tL~~F~~w--~~~~l~~~~~~D~a~LlT~~d~~ 106 (419)
T 2dw0_A 72 EAGYTLNAFGEW--RKTDLLTRKKHDNAQLLTAIDLD 106 (419)
T ss_dssp CHHHHHHHHHHH--HHHTHHHHSCCSEEEEEESSCCS
T ss_pred CHHHHHHHHHHH--HHhhccccCCCCeEEEEEeeccC
Confidence 677889998875 565542 68999999998874
No 34
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=20.49 E-value=86 Score=17.60 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=11.1
Q ss_pred eeeeeeecccccc
Q psy14251 49 IAVAVTKKERSGM 61 (76)
Q Consensus 49 iAia~T~lDmc~m 61 (76)
|.|++||.|+.+.
T Consensus 111 iilv~nK~Dl~~~ 123 (171)
T 1upt_A 111 LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEECCCCcCC
Confidence 6899999999764
No 35
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=20.23 E-value=52 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=21.2
Q ss_pred chhHHHHHhhhhhhhhc--CCcceeeeeeeee
Q psy14251 26 DSAAALTDMGKYLFRER--RLPVYDIAVAVTK 55 (76)
Q Consensus 26 Da~~AL~~Mg~YlyRE~--RlP~YDiAia~T~ 55 (76)
|.-+||..+++++|..- ++|+ |+|+-|+
T Consensus 126 d~~~aL~~la~~~~~~p~~~~~v--I~VTGTn 155 (535)
T 2wtz_A 126 APRGVLGGLAATVYGHPSERLTV--IGITGTS 155 (535)
T ss_dssp SSHHHHHHHHHHHTTCGGGSSEE--EEEESSS
T ss_pred CHHHHHHHHHHHHhcCccccceE--EEeeCCC
Confidence 67789999999988743 6675 6777664
Done!