RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14251
         (76 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.2 bits (65), Expect = 0.10
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 8/53 (15%)

Query: 12  TPYLE--RNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSGMI 62
           +  L    + + +D + +  +     K +    ++PVYD       +  SG I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFN--AKDI----QIPVYDTFDGSDLRVLSGSI 475


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.13
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 8/27 (29%)

Query: 5  LKKGRDATPYLERNRVGRDAIDSAAAL 31
          LKK       L+   +   A DSA AL
Sbjct: 22 LKK-------LQ-ASLKLYADDSAPAL 40


>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding,
           metalloprotease, protease; HET: SUC; 1.55A {Bacillus
           anthracis}
          Length = 434

 Score = 26.4 bits (58), Expect = 0.86
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 3   PDLK--KGRDATPYLERNRVGRDAIDSAAALTDMGKYLFRERRLPVYDIAVAVTKKERSG 60
           P+L   KG           +G D       +     YL    ++    I VA T  E  G
Sbjct: 144 PELPSYKGHTIITTDGTTLLGADDKAGLTEIMVAMNYLIHNPQIKHGKIRVAFTPDEEIG 203

Query: 61  M 61
            
Sbjct: 204 R 204


>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center
           for structural genomics, JCSG, protein structure INI
           PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
          Length = 495

 Score = 25.6 bits (56), Expect = 1.5
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 10  DATPYLE--RNRVGRDAIDSAAALTDMGKYLFRERRL 44
           DA   L   +   G   I +  +  D+ + ++ ERR 
Sbjct: 364 DAINKLNDLKTARGAKTIHTNLSQQDLLETIWLERRK 400


>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase,
          membrane-bound NI-Fe hydrogenase; 1.18A
          {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
          Length = 283

 Score = 25.8 bits (56), Expect = 1.6
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 48 DIAVAVTKKERSGMIWLSNQFHLTSGNTL 76
           IA A+  K R+ +IWL       +  + 
Sbjct: 2  KIAHAMETKPRTPVIWL--HGLECTCCSE 28


>3jq1_A SUSD superfamily protein; structural genomic center for structural
           genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
           MSE; 1.55A {Bacteroides vulgatus atcc 8482}
          Length = 481

 Score = 25.4 bits (56), Expect = 2.1
 Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 10  DATPYLE--RNRVGRDAIDSAAALTDMGKYLFRERRL 44
            +  Y+   R R   +          + + L  +R +
Sbjct: 379 TSIGYINQIRRRANLNDYSGPITKEGVFEDLVHQRAI 415


>1dc1_A Bsobi restriction endonuclease; protein-DNA complex, thermophilic
          enzyme, degenerate DNA recognition, hydrolase/DNA
          complex; HET: DNA; 1.70A {Geobacillus
          stearothermophilus} SCOP: c.52.1.11
          Length = 323

 Score = 24.8 bits (53), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 5  LKKGRDATPYLERNRVGRDAIDSAAALTDM 34
          L+K + +TPY+ER R  + A   A    D+
Sbjct: 33 LEKNKRSTPYIERARALKVAASVAKTPKDL 62


>3mcx_A SUSD superfamily protein; structural genomics, joint center for
           structural genomics, J protein structure initiative,
           PSI-2; HET: MSE GOL; 1.49A {Bacteroides
           thetaiotaomicron}
          Length = 477

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 10  DATPYLE--RNRVGRDAIDSAAALTDMGKYLFRERRL 44
           +A  YL    +R   D     +  T     + +ERR 
Sbjct: 376 EAQGYLNDIISRRTTDTSQQVSTETFTLDRILKERRK 412


>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A
           {Methanocaldococcus jannaschii}
          Length = 219

 Score = 23.7 bits (52), Expect = 6.5
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 27  SAAALTDMG-KYLF---RERRLPVYDIAVAVTKKERSGMI 62
            A A+ D G K       E+R+ + DI   + K +  G+ 
Sbjct: 74  LAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLE 113


>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A
           {Thermoproteus tenax} SCOP: c.1.1.1
          Length = 226

 Score = 23.7 bits (52), Expect = 6.6
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 27  SAAALTDMG-KYLF---RERRLPVYDIAVAVTKKERSGMI 62
           S   + + G   +     E  L + D+A  V K +  G+ 
Sbjct: 77  SLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLD 116


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,222,104
Number of extensions: 62201
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 11
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)