Query psy14254
Match_columns 210
No_of_seqs 113 out of 187
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 23:17:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05700 BCAS2: Breast carcino 100.0 4.2E-67 9.1E-72 444.7 26.5 207 4-210 6-215 (221)
2 KOG3096|consensus 100.0 3.8E-66 8.3E-71 423.5 23.5 208 1-208 1-208 (225)
3 PRK10884 SH3 domain-containing 85.0 21 0.00045 30.2 11.4 11 67-77 50-60 (206)
4 PF15290 Syntaphilin: Golgi-lo 79.2 35 0.00077 30.3 10.8 36 170-205 96-131 (305)
5 PRK10884 SH3 domain-containing 77.6 42 0.00092 28.3 12.3 19 99-117 93-111 (206)
6 PF15450 DUF4631: Domain of un 77.4 71 0.0015 30.8 15.8 94 95-188 297-401 (531)
7 PF05149 Flagellar_rod: Parafl 73.6 63 0.0014 28.9 11.1 69 135-207 10-82 (289)
8 PF00038 Filament: Intermediat 73.2 63 0.0014 28.2 11.5 54 137-190 46-102 (312)
9 PRK11637 AmiB activator; Provi 72.7 69 0.0015 29.6 11.8 39 129-167 38-76 (428)
10 PF04156 IncA: IncA protein; 64.4 75 0.0016 25.7 12.6 25 93-117 82-106 (191)
11 PF10146 zf-C4H2: Zinc finger- 63.8 96 0.0021 26.7 12.5 67 138-204 25-94 (230)
12 PF12325 TMF_TATA_bd: TATA ele 63.2 68 0.0015 24.8 10.8 72 133-205 39-110 (120)
13 PF11932 DUF3450: Protein of u 62.9 97 0.0021 26.5 11.7 47 131-177 70-116 (251)
14 PF05615 THOC7: Tho complex su 61.4 74 0.0016 24.6 11.1 74 92-165 42-115 (139)
15 TIGR02231 conserved hypothetic 60.0 1.6E+02 0.0035 28.0 12.2 34 92-125 71-104 (525)
16 PRK11637 AmiB activator; Provi 57.5 1.6E+02 0.0035 27.2 13.0 85 117-205 168-254 (428)
17 KOG0161|consensus 57.4 1.3E+02 0.0029 33.7 11.6 74 127-204 953-1026(1930)
18 PF10498 IFT57: Intra-flagella 56.4 1.6E+02 0.0035 27.0 13.2 106 91-206 190-316 (359)
19 PF12128 DUF3584: Protein of u 54.0 3E+02 0.0065 29.3 16.9 70 133-205 673-746 (1201)
20 PF06657 Cep57_MT_bd: Centroso 51.1 88 0.0019 22.3 8.0 52 134-185 13-65 (79)
21 PF09304 Cortex-I_coil: Cortex 50.5 1.1E+02 0.0024 23.3 11.5 29 127-155 33-61 (107)
22 PHA02562 46 endonuclease subun 49.9 2.3E+02 0.005 26.7 12.7 34 170-203 213-246 (562)
23 KOG0804|consensus 46.8 2.7E+02 0.0058 26.6 11.2 73 133-206 370-443 (493)
24 PF10498 IFT57: Intra-flagella 45.0 2.5E+02 0.0054 25.8 11.5 19 186-204 330-348 (359)
25 PF09726 Macoilin: Transmembra 44.9 3.4E+02 0.0073 27.3 16.2 106 96-205 457-580 (697)
26 PF15066 CAGE1: Cancer-associa 44.8 2.9E+02 0.0063 26.5 10.9 75 135-209 387-471 (527)
27 PRK03918 chromosome segregatio 44.0 3.5E+02 0.0075 27.2 17.5 66 98-164 161-226 (880)
28 TIGR01843 type_I_hlyD type I s 43.6 2.4E+02 0.0052 25.2 14.7 16 65-80 63-78 (423)
29 PF12548 DUF3740: Sulfatase pr 43.0 48 0.001 26.5 4.4 27 126-152 101-127 (145)
30 PF08826 DMPK_coil: DMPK coile 42.3 1.1E+02 0.0024 20.9 10.1 59 139-205 2-60 (61)
31 PF12128 DUF3584: Protein of u 42.3 4.5E+02 0.0098 28.0 17.5 78 128-205 378-456 (1201)
32 COG2433 Uncharacterized conser 42.0 3.6E+02 0.0078 26.8 12.4 76 128-204 433-508 (652)
33 PHA01750 hypothetical protein 41.9 1.2E+02 0.0026 21.2 7.2 23 136-158 33-55 (75)
34 PRK10361 DNA recombination pro 41.8 3.2E+02 0.007 26.2 14.1 59 119-177 121-179 (475)
35 KOG0980|consensus 41.6 4.3E+02 0.0092 27.5 16.0 66 94-163 419-484 (980)
36 PF10224 DUF2205: Predicted co 41.1 1.3E+02 0.0029 21.6 8.0 50 155-204 8-57 (80)
37 PF09738 DUF2051: Double stran 40.9 2.7E+02 0.0058 25.0 11.9 44 114-159 83-126 (302)
38 KOG4571|consensus 40.3 1.2E+02 0.0027 27.1 7.0 46 160-205 229-283 (294)
39 PF14662 CCDC155: Coiled-coil 39.9 2.3E+02 0.0049 23.9 11.8 38 170-207 74-111 (193)
40 PF00038 Filament: Intermediat 39.2 2.6E+02 0.0056 24.3 11.9 29 137-165 95-123 (312)
41 PHA02562 46 endonuclease subun 38.5 3.4E+02 0.0074 25.5 11.6 65 134-199 302-373 (562)
42 PF07083 DUF1351: Protein of u 38.4 2.4E+02 0.0052 23.7 9.6 67 137-206 38-104 (215)
43 PF10398 DUF2443: Protein of u 38.3 68 0.0015 22.9 4.1 24 139-162 51-74 (79)
44 KOG0972|consensus 37.8 3.1E+02 0.0068 24.8 11.7 58 92-159 198-255 (384)
45 PRK04778 septation ring format 36.9 4E+02 0.0086 25.8 14.2 110 94-205 70-179 (569)
46 KOG1760|consensus 35.8 2.2E+02 0.0047 22.4 6.9 64 96-159 34-109 (131)
47 smart00338 BRLZ basic region l 34.3 1.4E+02 0.0031 19.8 6.1 36 171-206 27-62 (65)
48 PF14389 Lzipper-MIP1: Leucine 33.8 1.8E+02 0.0039 21.0 6.0 34 174-207 51-84 (88)
49 PF08898 DUF1843: Domain of un 33.6 1.2E+02 0.0026 20.2 4.4 35 171-205 18-52 (53)
50 PF09177 Syntaxin-6_N: Syntaxi 33.6 93 0.002 22.6 4.5 35 171-205 16-60 (97)
51 TIGR01000 bacteriocin_acc bact 31.4 4.3E+02 0.0093 24.5 13.0 18 188-205 240-257 (457)
52 KOG1029|consensus 31.4 6.1E+02 0.013 26.3 13.1 99 96-198 511-609 (1118)
53 PRK00888 ftsB cell division pr 31.4 2.1E+02 0.0046 21.3 6.2 42 124-166 21-62 (105)
54 PF14971 DUF4510: Domain of un 31.2 2.8E+02 0.0061 22.5 7.0 50 133-182 31-90 (163)
55 PF09304 Cortex-I_coil: Cortex 31.1 2.4E+02 0.0052 21.5 10.1 66 133-202 11-76 (107)
56 COG3883 Uncharacterized protei 30.8 3.8E+02 0.0082 23.7 8.8 31 135-165 42-72 (265)
57 KOG0804|consensus 30.5 4.9E+02 0.011 24.9 13.8 64 133-203 384-447 (493)
58 PF00170 bZIP_1: bZIP transcri 30.3 1.7E+02 0.0036 19.4 8.9 43 158-206 20-62 (64)
59 PF09730 BicD: Microtubule-ass 30.3 5.9E+02 0.013 25.8 11.5 69 135-207 52-120 (717)
60 PRK13729 conjugal transfer pil 30.3 2.4E+02 0.0051 27.0 7.5 26 140-165 78-103 (475)
61 PF08671 SinI: Anti-repressor 29.9 62 0.0013 19.0 2.3 24 175-198 1-24 (30)
62 PF06160 EzrA: Septation ring 29.9 5.2E+02 0.011 25.0 16.0 108 96-205 68-175 (560)
63 smart00150 SPEC Spectrin repea 28.7 1.9E+02 0.0041 19.6 9.2 47 140-186 40-93 (101)
64 KOG4674|consensus 28.6 9E+02 0.02 27.3 16.3 82 124-205 1285-1381(1822)
65 PF05266 DUF724: Protein of un 28.3 2.6E+02 0.0056 23.3 6.7 16 189-204 164-179 (190)
66 KOG0977|consensus 28.0 5.4E+02 0.012 25.2 9.6 72 138-209 85-166 (546)
67 cd01878 HflX HflX subfamily. 27.8 1.2E+02 0.0026 24.3 4.6 29 135-163 3-31 (204)
68 PRK09039 hypothetical protein; 27.7 4.6E+02 0.01 23.7 11.5 25 135-159 113-137 (343)
69 PF15397 DUF4618: Domain of un 27.6 4.3E+02 0.0092 23.2 16.1 74 91-164 69-150 (258)
70 PF06156 DUF972: Protein of un 27.5 2.4E+02 0.0053 21.2 5.9 36 170-205 22-57 (107)
71 KOG0239|consensus 26.9 6.5E+02 0.014 25.2 11.0 62 142-204 245-313 (670)
72 PRK03918 chromosome segregatio 26.7 6.6E+02 0.014 25.2 14.0 31 171-201 660-690 (880)
73 COG1566 EmrA Multidrug resista 26.6 5E+02 0.011 23.8 11.6 39 65-119 73-111 (352)
74 PF06005 DUF904: Protein of un 26.0 2.4E+02 0.0051 19.8 7.0 7 178-184 57-63 (72)
75 KOG4807|consensus 25.9 5.7E+02 0.012 24.2 9.4 64 142-205 397-460 (593)
76 KOG1029|consensus 25.9 3.5E+02 0.0075 27.9 8.0 48 147-198 467-514 (1118)
77 PF09548 Spore_III_AB: Stage I 25.7 1.7E+02 0.0036 23.6 5.1 59 94-158 86-144 (170)
78 PF05377 FlaC_arch: Flagella a 25.1 1.6E+02 0.0035 19.7 4.0 15 169-183 27-41 (55)
79 PF04912 Dynamitin: Dynamitin 24.8 5.4E+02 0.012 23.5 11.4 73 105-178 311-383 (388)
80 COG1579 Zn-ribbon protein, pos 24.7 4.6E+02 0.01 22.7 14.3 23 98-120 30-52 (239)
81 PHA02047 phage lambda Rz1-like 24.5 3.1E+02 0.0067 20.6 7.5 28 133-160 36-63 (101)
82 PRK06851 hypothetical protein; 24.4 5E+02 0.011 23.9 8.5 53 145-197 115-170 (367)
83 KOG0161|consensus 23.9 1.1E+03 0.024 26.9 15.8 67 135-205 1467-1533(1930)
84 PF03233 Cauli_AT: Aphid trans 23.8 2.5E+02 0.0054 23.0 5.6 52 105-157 110-161 (163)
85 TIGR02168 SMC_prok_B chromosom 23.6 8E+02 0.017 25.1 12.2 78 132-209 180-257 (1179)
86 PF12325 TMF_TATA_bd: TATA ele 23.6 3.5E+02 0.0075 20.9 11.7 38 133-170 18-55 (120)
87 PF04977 DivIC: Septum formati 23.5 2.4E+02 0.0052 18.9 5.6 31 134-164 20-50 (80)
88 PF13815 Dzip-like_N: Iguana/D 23.3 3.3E+02 0.0071 20.5 6.7 28 133-160 75-102 (118)
89 PF07989 Microtub_assoc: Micro 23.2 2.7E+02 0.0059 19.5 8.0 31 175-205 34-64 (75)
90 KOG4403|consensus 23.2 6.7E+02 0.015 24.0 9.0 34 131-164 252-290 (575)
91 COG5509 Uncharacterized small 23.0 1.8E+02 0.0038 20.0 3.9 25 185-209 26-50 (65)
92 PF04568 IATP: Mitochondrial A 22.4 2.1E+02 0.0046 21.4 4.6 27 133-159 71-97 (100)
93 PF10458 Val_tRNA-synt_C: Valy 22.3 2.1E+02 0.0045 19.3 4.3 25 136-160 2-26 (66)
94 PF12980 DUF3864: Domain of Un 22.2 20 0.00044 25.3 -0.8 10 75-84 17-26 (82)
95 PRK05431 seryl-tRNA synthetase 21.0 6.8E+02 0.015 23.3 10.3 29 142-170 32-60 (425)
96 TIGR00998 8a0101 efflux pump m 21.0 5.5E+02 0.012 22.2 9.1 37 65-117 62-98 (334)
97 PRK06569 F0F1 ATP synthase sub 20.6 4.6E+02 0.01 21.2 11.2 67 132-198 56-124 (155)
98 TIGR00606 rad50 rad50. This fa 20.1 1.1E+03 0.024 25.3 11.5 76 133-209 845-920 (1311)
No 1
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=100.00 E-value=4.2e-67 Score=444.71 Aligned_cols=207 Identities=49% Similarity=0.817 Sum_probs=199.2
Q ss_pred CcccccCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCccCCCC---CCCCcccchHHHHHHHHHHccCCCCCCCccc
Q psy14254 4 EVLVDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPP---LDINKFETEIMRKDFERIQQRLPMEPLSMIR 80 (210)
Q Consensus 4 ~~~vDaLPYiD~~~~~p~~r~~v~~LI~~E~~~~~~~~~yl~~lp~---~~~~~f~sp~l~~E~~Rv~~~~~~~~lD~sR 80 (210)
.++||||||||++|++|++|++|++||++||++++|+++||+.+|+ |+++.|.||+|.+||+|+++|.||++||++|
T Consensus 6 ~~~vDaLPYiD~~~~~~~~~~~a~~lI~eE~~~~~~~~~~l~~lp~~~~~~~~~~~t~~l~~E~~R~~~~~~~~~lD~sR 85 (221)
T PF05700_consen 6 EVLVDALPYIDPDYDTPEERQAAEALIEEEMRRYRPTKNYLPHLPPPPEPPFSAFETPLLQAELERVASGEPMQGLDMSR 85 (221)
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCchhHHhCCCCCCCCcccccchhHHHHHHHHHcCCCCCccCHHh
Confidence 4589999999999989999999999999999988889999999998 5556677899999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 81 YKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWE 160 (210)
Q Consensus 81 Y~l~~p~~~~~~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~ 160 (210)
|++|+||+++.+|+++|++||.||+++++|+.+|+.||+||.+||.|+|++||++|+++++.+++++..+|++|++||+.
T Consensus 86 Y~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~ 165 (221)
T PF05700_consen 86 YELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRE 165 (221)
T ss_pred cCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14254 161 RKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKAKR 210 (210)
Q Consensus 161 RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~~~~ 210 (210)
||..|+.+|.+|+.|+.+|+++|+||++|++||..|++||.++|++++++
T Consensus 166 RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 166 RKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 2
>KOG3096|consensus
Probab=100.00 E-value=3.8e-66 Score=423.54 Aligned_cols=208 Identities=53% Similarity=0.852 Sum_probs=203.4
Q ss_pred CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCcccchHHHHHHHHHHccCCCCCCCccc
Q psy14254 1 MAGEVLVDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIR 80 (210)
Q Consensus 1 ~~~~~~vDaLPYiD~~~~~p~~r~~v~~LI~~E~~~~~~~~~yl~~lp~~~~~~f~sp~l~~E~~Rv~~~~~~~~lD~sR 80 (210)
|+|.++||||||||++|++|+.|++|.+||++||++++|+++|++++|.|.+++|.||+|.+||+|+.++.||..|||||
T Consensus 1 ~~g~v~vDALPY~D~~Y~e~~~Rs~a~~lVEeE~rr~rptknyl~~lp~p~~s~f~t~~m~ne~er~~~k~pm~~l~msR 80 (225)
T KOG3096|consen 1 TAGEVSVDALPYFDSGYNEPGDRSAAAALVEEECRRYRPTKNYLDHLPLPDYSAFLTDRMENEFERAGKKEPMEALDMSR 80 (225)
T ss_pred CCcceeeccccccccccCchhhHHHHHHHHHHHHHhhcchhhhhhcCCCcccchhhhhHHHHHHHHHhccCcchhhhHHh
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 81 YKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWE 160 (210)
Q Consensus 81 Y~l~~p~~~~~~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~ 160 (210)
|.+|.||+++.+|..+|+++|.|+.+|++||..|++||+||++||+++|+.+|..|+.++.+++++|.++++.|++|||+
T Consensus 81 yelp~Ppagkr~d~~aW~e~l~ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~ 160 (225)
T KOG3096|consen 81 YELPAPPAGKRNDDAAWQESLLNSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQ 160 (225)
T ss_pred hcCCCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14254 161 RKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKA 208 (210)
Q Consensus 161 RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~~ 208 (210)
||..|+.+|.+|+.||++|+.+|+||++|++||..|+.+|.+.+++.+
T Consensus 161 RK~~Q~~ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~~~r~q~r 208 (225)
T KOG3096|consen 161 RKHAQLTAGERLRELEQKWVQLVSKNYEIEVACVQLETQIDKKRQQER 208 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999997776654
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.02 E-value=21 Score=30.17 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=5.1
Q ss_pred HHccCCCCCCC
Q psy14254 67 IQQRLPMEPLS 77 (210)
Q Consensus 67 v~~~~~~~~lD 77 (210)
+.+|.++.-|+
T Consensus 50 l~~G~~v~vl~ 60 (206)
T PRK10884 50 LNAGEEVTLLQ 60 (206)
T ss_pred EcCCCEEEEEE
Confidence 34555544333
No 4
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=79.21 E-value=35 Score=30.35 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.+|..+...|-+--=--+|-..|..+-+.||.+||+
T Consensus 96 sQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQ 131 (305)
T PF15290_consen 96 SQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQ 131 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666765444445677777777777777776
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.56 E-value=42 Score=28.31 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHHh
Q psy14254 99 ECVENSMSQLEHQSTRIVN 117 (210)
Q Consensus 99 ~al~na~~~lehq~~R~~N 117 (210)
.-+.....++.-...++.|
T Consensus 93 ~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 6
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.43 E-value=71 Score=30.81 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHH-HhHHHHhhhCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 95 AAWTECVENSMSQLEHQSTRI-VNLQLMLEYGPETWKEYL----------QTLVNCVSQAQSKLIQLRKEIQEINWERKV 163 (210)
Q Consensus 95 ~~w~~al~na~~~lehq~~R~-~NLeLl~~~g~naW~~~n----------~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 163 (210)
.+|..--.--+.+.+....++ .||+-|..-|..++..-. ..++.-+..+.+.+..+...|..|+|.=..
T Consensus 297 kaR~~k~~~e~sk~eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~ 376 (531)
T PF15450_consen 297 KARDAKEKLEESKAEELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDL 376 (531)
T ss_pred HHHHHHhHHHHhhHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 344443333445556666665 678888888988887742 334555677778888889999999998777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q psy14254 164 MQIKGGEQLKKLEADWVGLVSKNYE 188 (210)
Q Consensus 164 ~Q~~~~~~L~~Le~~W~~~v~kn~e 188 (210)
.=...+.+|..+...|.+-+.++++
T Consensus 377 qEqtL~~rL~e~~~e~~~~~r~~le 401 (531)
T PF15450_consen 377 QEQTLNLRLSEAKNEWESDERKSLE 401 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999887
No 7
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=73.60 E-value=63 Score=28.86 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQ----ACVLLEKKIQILQAEK 207 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~----a~~~Le~ei~~~~~~~ 207 (210)
.-...+...+..|..+...|+..+..+...+...... ...|...+++|.+-+. ++.+|++++..+-.++
T Consensus 10 ~~~~~~~~~~~Dl~~i~e~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er 82 (289)
T PF05149_consen 10 YKRRQKQACEEDLERIKEKIQNTDAEDAAQRKRYAAQ----RKESEKFLQKNEEQQQELWREIQELERELQDLAEER 82 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888999999999988888777655444 4556666666665444 4466777766655443
No 8
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.21 E-value=63 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Q psy14254 137 VNCVSQAQSKLIQLRKEIQEINWERKVMQIKGG---EQLKKLEADWVGLVSKNYEIE 190 (210)
Q Consensus 137 e~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~---~~L~~Le~~W~~~v~kn~eie 190 (210)
......++.++..+++.|++++..+-..+...+ ..+..+..+|.......-.++
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777888877777776666544 355556666665554433333
No 9
>PRK11637 AmiB activator; Provisional
Probab=72.73 E-value=69 Score=29.62 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14254 129 WKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIK 167 (210)
Q Consensus 129 W~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~ 167 (210)
|......+..-+..+++++..+.+++.++....+..+..
T Consensus 38 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 38 FSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345566666666666666666666666655544433
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.40 E-value=75 Score=25.67 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHhHHHHHHHh
Q psy14254 93 DIAAWTECVENSMSQLEHQSTRIVN 117 (210)
Q Consensus 93 d~~~w~~al~na~~~lehq~~R~~N 117 (210)
+...++..+......+.+...++..
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~ 106 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQE 106 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554443
No 11
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.78 E-value=96 Score=26.67 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 138 NCVSQAQSKLIQLRKEIQEINWERKVMQIKG---GEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 138 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
...+..++-|.+++++++.++.+|+.+=... -..+..||.-+++.-+..-.+...+..+..|+..++
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk 94 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888888888888887765544 445666777777766655555444455444444433
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.23 E-value=68 Score=24.79 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
+..|+.....+..++-.+-.+.+++...-+.-. ....++..|+.++...+.=-=|-.-.+.+|+.+|.++|.
T Consensus 39 l~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~-~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 39 LARLEAERDELREEIVKLMEENEELRALKKEVE-ELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555533222222 334455556666555444222235566788888888774
No 13
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.90 E-value=97 Score=26.46 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy14254 131 EYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEA 177 (210)
Q Consensus 131 ~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~ 177 (210)
.+|.+++..+...++++..+.++|+.+...|+.----...-+..|+.
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777766665444333333333433
No 14
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=61.38 E-value=74 Score=24.60 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=63.4
Q ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 92 SDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 92 ~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
.+...+.+.+..--++.+..-.|..-+-=|.+-....|..-+..++.....+.+++..+|.+++.....|+..+
T Consensus 42 e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~ 115 (139)
T PF05615_consen 42 EESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKE 115 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777778887777776666777788899999999999999999999999999999999999988
No 15
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.01 E-value=1.6e+02 Score=27.98 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhC
Q psy14254 92 SDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYG 125 (210)
Q Consensus 92 ~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g 125 (210)
..+.++++.+..+...+.....++..++-..+|=
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666555544443
No 16
>PRK11637 AmiB activator; Provisional
Probab=57.52 E-value=1.6e+02 Score=27.20 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=37.3
Q ss_pred hHHHHhhhCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 117 NLQLMLEYGPETWKEY--LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACV 194 (210)
Q Consensus 117 NLeLl~~~g~naW~~~--n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~ 194 (210)
..+++..|....=.+. ...++..+..++..+..+..+..++...++..|. .+..|+..-...-...-+++....
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~----~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKK----TLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655432222 2333334444444444444444444443333221 334444444443333344555555
Q ss_pred HHHHHHHHHHH
Q psy14254 195 LLEKKIQILQA 205 (210)
Q Consensus 195 ~Le~ei~~~~~ 205 (210)
.|+..|.++++
T Consensus 244 ~L~~~I~~l~~ 254 (428)
T PRK11637 244 RLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 17
>KOG0161|consensus
Probab=57.37 E-value=1.3e+02 Score=33.68 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 127 ETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 127 naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
.-|..-...+++-++.++.++..+...+..+|+.||..+...+.-...|... --++-...-+|..|+.++.++.
T Consensus 953 ~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~----eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 953 QKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAE----EEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888999999999999999999999999776655544443332 3344445555666665555543
No 18
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.37 E-value=1.6e+02 Score=26.96 Aligned_cols=106 Identities=13% Similarity=0.266 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy14254 91 MSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQI---- 166 (210)
Q Consensus 91 ~~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~---- 166 (210)
..|..+|+.-|.....+| ++. -+-...-|+.|.++.......+++.+..++..++.|-......-.
T Consensus 190 ~vd~~eWklEvERV~PqL-----Kv~-----~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~s 259 (359)
T PF10498_consen 190 KVDPAEWKLEVERVLPQL-----KVT-----IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIES 259 (359)
T ss_pred cCCHHHHHHHHHHHhhhh-----eee-----ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999988887 111 112236777777776666666666666555555443322221111
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 167 -----------------KGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 167 -----------------~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
.+..+|.....+++++-+.+-+......++-.++.+.|.+
T Consensus 260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455555555555555555555555555555555554
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.97 E-value=3e+02 Score=29.27 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLE----ADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le----~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
...++.....++..+..+..++..++.+++.........+..+. ..|.+..+. +......+..+|...+.
T Consensus 673 ~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~---~d~~i~~i~~~i~~~~~ 746 (1201)
T PF12128_consen 673 EEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAE---LDEQIEQIKQEIAAAKQ 746 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666666666555 344443332 44444555555554444
No 20
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=51.07 E-value=88 Score=22.28 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKK-LEADWVGLVSK 185 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~-Le~~W~~~v~k 185 (210)
..|..++..++.++...+-+-.+++..=+..+...+...+. |+..|..+|.+
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~ 65 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKR 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888877777777777766665 88888888875
No 21
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=50.55 E-value=1.1e+02 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 127 ETWKEYLQTLVNCVSQAQSKLIQLRKEIQ 155 (210)
Q Consensus 127 naW~~~n~~Le~~~~~le~~l~~~r~~ie 155 (210)
.-|....+.|++.+..|+.+.....+.|.
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~ 61 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33433344444444444433333333333
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=49.85 E-value=2.3e+02 Score=26.73 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQIL 203 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~ 203 (210)
..+..++..-..++...-.++..+..|+.++..+
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555544
No 23
>KOG0804|consensus
Probab=46.84 E-value=2.7e+02 Score=26.63 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYE-IEQACVLLEKKIQILQAE 206 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~e-ie~a~~~Le~ei~~~~~~ 206 (210)
+..++...+.+++.+.++...+..+-. ++..+.+....|..=..-|.+-+.+--+ ...++...+.+|.+|+.+
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~k-el~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQK-ELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544 2333335555555555666666665444 445566666666666543
No 24
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.99 E-value=2.5e+02 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14254 186 NYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 186 n~eie~a~~~Le~ei~~~~ 204 (210)
.+.|..|+.+|+.||.++-
T Consensus 330 lv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 330 LVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4568999999999998764
No 25
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=44.90 E-value=3.4e+02 Score=27.26 Aligned_cols=106 Identities=21% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------
Q psy14254 96 AWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGG------ 169 (210)
Q Consensus 96 ~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~------ 169 (210)
.-+..|.+.+...++...++.||.= .- ..=+.....||.-+...++.-..+.++..+.=+.||.....+.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~--aR--q~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~ 532 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQ--AR--QQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA 532 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc
Confidence 3467777778777777777777432 21 1224455566666655555555555544444444443322222
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 ------------EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 170 ------------~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
...+.||..-+.+-..--.-|-.|..||.|+.+++.
T Consensus 533 ~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 533 QATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456666655555555567777777777766665
No 26
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=44.84 E-value=2.9e+02 Score=26.51 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGE---QLKKLEADWVG-------LVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~-------~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
.++..++.|+..++.+++.+++--..-+.-|..... ....|..++.. .|+.-++++.+.-+=+.||..|+
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345666777777888888887777777777766543 22336666655 45567888888888889999888
Q ss_pred HHHhc
Q psy14254 205 AEKAK 209 (210)
Q Consensus 205 ~~~~~ 209 (210)
+-+|+
T Consensus 467 ~lkge 471 (527)
T PF15066_consen 467 QLKGE 471 (527)
T ss_pred HHHHH
Confidence 86654
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=44.04 E-value=3.5e+02 Score=27.16 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 98 TECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVM 164 (210)
Q Consensus 98 ~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~ 164 (210)
..+..++.........++.+++-........ .-....++..+..+.+++..++.++..+...++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i-~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENI-EELIKEKEKELEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666666666665544333322 22344455555666666666666666665555443
No 28
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=43.63 E-value=2.4e+02 Score=25.20 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=8.0
Q ss_pred HHHHccCCCCCCCccc
Q psy14254 65 ERIQQRLPMEPLSMIR 80 (210)
Q Consensus 65 ~Rv~~~~~~~~lD~sR 80 (210)
++|..|+++-.||.+.
T Consensus 63 ~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 63 DRVKAGQVLVELDATD 78 (423)
T ss_pred CEecCCCeEEEEccch
Confidence 4455555554555443
No 29
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=42.97 E-value=48 Score=26.55 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 126 PETWKEYLQTLVNCVSQAQSKLIQLRK 152 (210)
Q Consensus 126 ~naW~~~n~~Le~~~~~le~~l~~~r~ 152 (210)
.++|+.|-.+++..++.|+..|..+|.
T Consensus 101 ~~aWk~hr~~ID~eIe~Lq~Ki~~LKe 127 (145)
T PF12548_consen 101 PKAWKDHRLHIDHEIETLQDKIKNLKE 127 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998888888887775
No 30
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.27 E-value=1.1e+02 Score=20.87 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 139 CVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 139 ~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
+...|+.++.....--+++++.+. ....+..+|+ +.-.+|-+++.-+..|+.++.++|.
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~-~n~~~e~kLq-------eaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKS-ANLAFESKLQ-------EAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346778888888888888887443 3444444444 4445577777777888888887764
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.26 E-value=4.5e+02 Score=27.96 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy14254 128 TWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSK-NYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 128 aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~k-n~eie~a~~~Le~ei~~~~~ 205 (210)
.=..|+.....+...........+.+++.+.-.+...+...-..+..|+..|..-... .-++...-..+..++..++.
T Consensus 378 i~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 456 (1201)
T PF12128_consen 378 IESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQ 456 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666667777777778888888888888888888888888899999999843332 22344444444444444443
No 32
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.00 E-value=3.6e+02 Score=26.77 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 128 TWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 128 aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
....+|..|+..+..+++++.+++.+.+.+-+.=. .-..-..+++.++.+-..+-.+-.+=..-+.+|+..+.+++
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666555533211 22222334444554444443333334444556666665555
No 33
>PHA01750 hypothetical protein
Probab=41.85 E-value=1.2e+02 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 136 LVNCVSQAQSKLIQLRKEIQEIN 158 (210)
Q Consensus 136 Le~~~~~le~~l~~~r~~ie~vN 158 (210)
-++...-++++|.+++.+|+++|
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778899999999999998
No 34
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.83 E-value=3.2e+02 Score=26.15 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy14254 119 QLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEA 177 (210)
Q Consensus 119 eLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~ 177 (210)
+.|..-+..-=..+...|+.+++-+...|...+++|+++...|.........+|+.|..
T Consensus 121 ~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~ 179 (475)
T PRK10361 121 RIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ 179 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544556678999999999999999999999999998888666666666643
No 35
>KOG0980|consensus
Probab=41.63 E-value=4.3e+02 Score=27.49 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 94 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKV 163 (210)
Q Consensus 94 ~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 163 (210)
.-+|++-.++-+.-+ ...|....+||.||+.-+=..-.....- -.++++..++..+++++-+++-.
T Consensus 419 ~l~~e~ry~klkek~--t~l~~~h~~lL~K~~di~kQle~~~~s~--~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 419 ALAAENRYEKLKEKY--TELRQEHADLLRKYDDIQKQLESAEQSI--DDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555443 4457888899999997654443222221 14455555555555555544443
No 36
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=41.06 E-value=1.3e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.148 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 155 QEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 155 e~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
.+|.+.-+..+.....++..|...-..++.+.-.+...|..|+.|..-|.
T Consensus 8 ~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq 57 (80)
T PF10224_consen 8 EDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQ 57 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666677777888888888888888888888888888766554
No 37
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.86 E-value=2.7e+02 Score=24.97 Aligned_cols=44 Identities=14% Similarity=0.028 Sum_probs=36.2
Q ss_pred HHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 114 RIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 114 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
+-.=.|+=.+|-+. .+.|.+|++....+.=++.-++..++++--
T Consensus 83 k~~l~evEekyrkA--Mv~naQLDNek~~l~yqvd~Lkd~lee~eE 126 (302)
T PF09738_consen 83 KDSLAEVEEKYRKA--MVSNAQLDNEKSALMYQVDLLKDKLEELEE 126 (302)
T ss_pred HHHHHHHHHHHHHH--HHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 44445777899888 899999999999999999999988887654
No 38
>KOG4571|consensus
Probab=40.33 E-value=1.2e+02 Score=27.05 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 160 ERKVMQIKG---------GEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 160 ~RK~~Q~~~---------~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.||..|..+ ..+-..|...-..+-.+|-++..-...|++||..+|+
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 39
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=39.90 E-value=2.3e+02 Score=23.86 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEK 207 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~ 207 (210)
.-++.||..-+.+...+.++|.....|.++|..|..+-
T Consensus 74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777666543
No 40
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.24 E-value=2.6e+02 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 137 VNCVSQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 137 e~~~~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
......++.++..+++.+++.+..|-.-+
T Consensus 95 ~~~~~~le~el~~lrk~ld~~~~~r~~le 123 (312)
T PF00038_consen 95 LAERKDLEEELESLRKDLDEETLARVDLE 123 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHhHHH
Confidence 34444445555555555555444444333
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.52 E-value=3.4e+02 Score=25.52 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQ-------LKKLEADWVGLVSKNYEIEQACVLLEKK 199 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~-------L~~Le~~W~~~v~kn~eie~a~~~Le~e 199 (210)
..|++....+++++..+...+.++.......+ ....+ +......+...+.+.-.++..+..|+..
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666664444433211 12222 3333444545555544555555555443
No 42
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=38.42 E-value=2.4e+02 Score=23.71 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 137 VNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 137 e~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
+......-+..+.+++-...|+..||.-=-.....+..++..-+.++.. |..+...+...|.....+
T Consensus 38 ee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~---i~~~~~~I~~~ik~~Ee~ 104 (215)
T PF07083_consen 38 EENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAP---IDEASDKIDEQIKEFEEK 104 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4556667778888888899999999999999999999999999988765 666777777766655443
No 43
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=38.25 E-value=68 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 139 CVSQAQSKLIQLRKEIQEINWERK 162 (210)
Q Consensus 139 ~~~~le~~l~~~r~~ie~vN~~RK 162 (210)
...++..++.++|..|+.+|+..|
T Consensus 51 ~~~QideeV~~LKe~IdaLNK~Kk 74 (79)
T PF10398_consen 51 FLAQIDEEVEKLKEHIDALNKIKK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999998754
No 44
>KOG0972|consensus
Probab=37.79 E-value=3.1e+02 Score=24.84 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 92 SDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 92 ~d~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
+|...|.--|..---|| -.-.+.-..-|++|..+++.+.+.++..+....-..+.+..
T Consensus 198 tDa~eW~lEvERVlPQL----------KVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~ 255 (384)
T KOG0972|consen 198 TDAIEWKLEVERVLPQL----------KVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHK 255 (384)
T ss_pred chHHHHHHHHHHhhhhh----------eehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 45555665555444433 23345556789999988888888777776665555555443
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.88 E-value=4e+02 Score=25.76 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy14254 94 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLK 173 (210)
Q Consensus 94 ~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~ 173 (210)
-..|...+.+.-...+-+-..... ..++|-=-.=+.....++..+...+..+..++..++++...=+.....+..-..
T Consensus 70 ~~~~~~i~~~~~~~ie~~l~~ae~--~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~ 147 (569)
T PRK04778 70 RQKWDEIVTNSLPDIEEQLFEAEE--LNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD 147 (569)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443 555555444466678899999999999999999999988766555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 174 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.+..-=+.++.++...+-|...|+..+..+..
T Consensus 148 ~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~ 179 (569)
T PRK04778 148 LYRELRKSLLANRFSFGPALDELEKQLENLEE 179 (569)
T ss_pred HHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 45555666777777889999999988877654
No 46
>KOG1760|consensus
Probab=35.84 E-value=2.2e+02 Score=22.41 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhhh-CHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 96 AWTECVENSMSQLEHQSTRIVNLQLMLEY-GPETWKEY-----------LQTLVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 96 ~w~~al~na~~~lehq~~R~~NLeLl~~~-g~naW~~~-----------n~~Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
..+.-+.+++.++++..--..-++|++.- -.=-++++ +.+|+...+.+++.+..+..+.+.|-.
T Consensus 34 ~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~ 109 (131)
T KOG1760|consen 34 DLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISA 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999888888898876 11113333 577777778888887777777666643
No 47
>smart00338 BRLZ basic region leucin zipper.
Probab=34.34 E-value=1.4e+02 Score=19.84 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
.+..|+.+-..+...|-++...+..|+.++..++..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888887754
No 48
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=33.81 E-value=1.8e+02 Score=20.99 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVSKNYEIEQACVLLEKKIQILQAEK 207 (210)
Q Consensus 174 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~ 207 (210)
.+-.+-++++....-+|..+..||..|..|.++.
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899988889999999999999998864
No 49
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=33.63 E-value=1.2e+02 Score=20.21 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
+++.|-..-...+...=+|..|...|..||.++.+
T Consensus 18 ~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 18 QMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 45666666666677666799999999999988764
No 50
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=33.56 E-value=93 Score=22.60 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKN----------YEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn----------~eie~a~~~Le~ei~~~~~ 205 (210)
.+.+|-.+|..+.... -++..+|..++.++.+|.+
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~ 60 (97)
T PF09177_consen 16 RLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEE 60 (97)
T ss_dssp HHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555565554432 3567777777777776654
No 51
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.44 E-value=4.3e+02 Score=24.54 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14254 188 EIEQACVLLEKKIQILQA 205 (210)
Q Consensus 188 eie~a~~~Le~ei~~~~~ 205 (210)
+++.....++.+|.+.+.
T Consensus 240 ~~~~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 240 TIQQQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555544433
No 52
>KOG1029|consensus
Probab=31.39 E-value=6.1e+02 Score=26.27 Aligned_cols=99 Identities=14% Similarity=0.022 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14254 96 AWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKL 175 (210)
Q Consensus 96 ~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~L 175 (210)
.|..-+.+..+.+.|...|..-|+-......-. -..+...+..++++......+|+..|-+-|.--+.+...+-..
T Consensus 511 ~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~i----rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak 586 (1118)
T KOG1029|consen 511 ELNHQLKQKQSAHKETTQRKSELEAARRKKELI----RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK 586 (1118)
T ss_pred HHHHHHHHhhhhccCcchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444333322211 2356666677788888888888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 176 EADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 176 e~~W~~~v~kn~eie~a~~~Le~ 198 (210)
+.-++.---+-.+++.-+.+|..
T Consensus 587 e~~yk~e~d~~ke~et~~lel~~ 609 (1118)
T KOG1029|consen 587 EELYKNERDKLKEAETKALELIG 609 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77666544444455555555543
No 53
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=31.36 E-value=2.1e+02 Score=21.34 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=23.8
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 124 YGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQI 166 (210)
Q Consensus 124 ~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~ 166 (210)
||.+.|. ....+...+..+++++++++.+.+.+..+-+.-|.
T Consensus 21 ~g~~G~~-~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 21 FGKNGIL-DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred ccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555553 33455555666666666666666666655554443
No 54
>PF14971 DUF4510: Domain of unknown function (DUF4510)
Probab=31.22 E-value=2.8e+02 Score=22.54 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQ----------EINWERKVMQIKGGEQLKKLEADWVGL 182 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie----------~vN~~RK~~Q~~~~~~L~~Le~~W~~~ 182 (210)
..+|..+...|+..+..-|..=+ +--..|+..|+.++.+|..|+..|...
T Consensus 31 ~reLqaL~eeLqe~~e~RRaawea~vg~~~~Gpewsaar~a~qeaV~~EL~aLq~~we~~ 90 (163)
T PF14971_consen 31 ARELQALQEELQEAVEPRRAAWEAKVGGCGQGPEWSAARRALQEAVEQELAALQRAWEQG 90 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555555555444432211 123459999999999999999999864
No 55
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.15 E-value=2.4e+02 Score=21.50 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQI 202 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 202 (210)
+..+.+-+..|+..+...|.-++++-++|+. ....+..|..+=...+.+.-+|+.-+..+...+..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~----L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQ----LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666444443 33334444444444444444444444444444433
No 56
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.76 E-value=3.8e+02 Score=23.67 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
.+...+..+++++..+-.+|++++..++..|
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666555544
No 57
>KOG0804|consensus
Probab=30.46 E-value=4.9e+02 Score=24.90 Aligned_cols=64 Identities=23% Similarity=0.143 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQIL 203 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~ 203 (210)
..++..-++.+++++...+ ++|..=...|.....+++.++.+-++.+.. .+.-+..|+.++.++
T Consensus 384 ~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~~e~~~~~~~s---~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKELEEREKEALGS---KDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhH
Confidence 3455555566666665555 788877778888888999999988888774 566667777777654
No 58
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.34 E-value=1.7e+02 Score=19.44 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 158 NWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 158 N~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
.+.||..+ +..|+.+-..+...|-.+...+..|..++..|+.+
T Consensus 20 ~R~RKk~~------~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 20 SRQRKKQY------IEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555444 56677777777788888888888888888777653
No 59
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.32 E-value=5.9e+02 Score=25.77 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEK 207 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~ 207 (210)
...+...+|......+++..+.+-.+|+.. ..+|+.+..+=..++...-++|..+..|+.+|--||..+
T Consensus 52 ~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l----r~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ 120 (717)
T PF09730_consen 52 NVQAENERLSQLNQELRKECEDLELERKRL----REEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ 120 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 333444455555555555555555555543 456666666666777777777777777777776666543
No 60
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.27 E-value=2.4e+02 Score=27.04 Aligned_cols=26 Identities=27% Similarity=0.352 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 140 VSQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 140 ~~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
.+.+|++|+.+|++.+.+.+.++..|
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 34456666666666666655555443
No 61
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=29.94 E-value=62 Score=18.95 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 175 LEADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 175 Le~~W~~~v~kn~eie~a~~~Le~ 198 (210)
|...|..++....++.....+.+.
T Consensus 1 LD~EW~~Li~eA~~~Gls~eeir~ 24 (30)
T PF08671_consen 1 LDEEWVELIKEAKESGLSKEEIRE 24 (30)
T ss_dssp --HHHHHHHHHHHHTT--HHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHH
Confidence 567899999999888888777664
No 62
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.93 E-value=5.2e+02 Score=24.99 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14254 96 AWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKL 175 (210)
Q Consensus 96 ~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~L 175 (210)
.|.+.+...-..++.+-.-... ..++|---.=+.....++..+..++..+..+...++++-..=+.....+..-...+
T Consensus 68 ~w~~i~~~~~~~ie~~L~~ae~--~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y 145 (560)
T PF06160_consen 68 KWDEIVTKQLPEIEEQLFEAEE--YADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKY 145 (560)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444442 34444444444557788888899999999999988888765555555555544556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 176 EADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 176 e~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
..-=+.+...+...+-|+..|+..+..+..
T Consensus 146 ~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~ 175 (560)
T PF06160_consen 146 RELRKELLAHSFSYGPAIEELEKQLENIEE 175 (560)
T ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHHHHH
Confidence 666667777888899999999988877654
No 63
>smart00150 SPEC Spectrin repeats.
Probab=28.74 E-value=1.9e+02 Score=19.57 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH------HHHhhHHHHHHHHHHHHHHHHHH
Q psy14254 140 VSQAQSKLIQLRKEIQEINWER-KV------MQIKGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 140 ~~~le~~l~~~r~~ie~vN~~R-K~------~Q~~~~~~L~~Le~~W~~~v~kn 186 (210)
.+.++.++...+..|+.||..= +. .-......+..|..+|..++...
T Consensus 40 ~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 93 (101)
T smart00150 40 HEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELA 93 (101)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666665541 11 22345666788888998877664
No 64
>KOG4674|consensus
Probab=28.56 E-value=9e+02 Score=27.35 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.9
Q ss_pred hCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy14254 124 YGPETWKEYLQTLVN---------------CVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYE 188 (210)
Q Consensus 124 ~g~naW~~~n~~Le~---------------~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~e 188 (210)
.-..-|+.++..|.. ...+|+.++......|.+++..=...|..+...+..|...-..+....=+
T Consensus 1285 ~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~q 1364 (1822)
T KOG4674|consen 1285 EENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQ 1364 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777655544 36777888888888888888877777777777777777777776666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14254 189 IEQACVLLEKKIQILQA 205 (210)
Q Consensus 189 ie~a~~~Le~ei~~~~~ 205 (210)
++.+...|++....+..
T Consensus 1365 l~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1365 LEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666654444433
No 65
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.26 E-value=2.6e+02 Score=23.26 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14254 189 IEQACVLLEKKIQILQ 204 (210)
Q Consensus 189 ie~a~~~Le~ei~~~~ 204 (210)
.+..|..+..+|...+
T Consensus 164 lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 164 LKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554443
No 66
>KOG0977|consensus
Probab=28.01 E-value=5.4e+02 Score=25.16 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 138 NCVSQAQSKLIQLRKEIQEINWERKVMQIKGGE---QLKKLEADWVGLVS-------KNYEIEQACVLLEKKIQILQAEK 207 (210)
Q Consensus 138 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~---~L~~Le~~W~~~v~-------kn~eie~a~~~Le~ei~~~~~~~ 207 (210)
++..-++.++...++-|++.++.|-..+.+... ++..|..+|..... +..+...+...+++++.-+++.-
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI 164 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Q ss_pred hc
Q psy14254 208 AK 209 (210)
Q Consensus 208 ~~ 209 (210)
..
T Consensus 165 ~~ 166 (546)
T KOG0977|consen 165 KA 166 (546)
T ss_pred HH
No 67
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=27.85 E-value=1.2e+02 Score=24.26 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKV 163 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 163 (210)
+|+.-.+.+++.+..++++|+.+=++||.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (204)
T cd01878 3 QLETDRRLIRERIAKLRRELEKVKKQREL 31 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 67888899999999999999999888765
No 68
>PRK09039 hypothetical protein; Validated
Probab=27.67 E-value=4.6e+02 Score=23.69 Aligned_cols=25 Identities=4% Similarity=-0.146 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
.++.-...++.+|...+..+.+-+.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~ 137 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALA 137 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4444455555555555555554443
No 69
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.56 E-value=4.3e+02 Score=23.24 Aligned_cols=74 Identities=22% Similarity=0.298 Sum_probs=56.5
Q ss_pred CCcHHHHHHHH----HHHHHHHhHHHHHHHh----HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 91 MSDIAAWTECV----ENSMSQLEHQSTRIVN----LQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERK 162 (210)
Q Consensus 91 ~~d~~~w~~al----~na~~~lehq~~R~~N----LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK 162 (210)
.++..+|++.. .....++++...++.| |.-|..|..--+-+-.-+..++...++..-.....+.+++|..|+
T Consensus 69 k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~ 148 (258)
T PF15397_consen 69 KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ 148 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788897754 4455666777777655 567888888777777878888888888888888999999998887
Q ss_pred HH
Q psy14254 163 VM 164 (210)
Q Consensus 163 ~~ 164 (210)
..
T Consensus 149 ~e 150 (258)
T PF15397_consen 149 ME 150 (258)
T ss_pred HH
Confidence 53
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=27.48 E-value=2.4e+02 Score=21.22 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.++..|...+..++-.|..+.+.+..|+.-+.++..
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778889999999999999988888887776654
No 71
>KOG0239|consensus
Probab=26.91 E-value=6.5e+02 Score=25.17 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 142 QAQSKLIQLRKEIQEINWERKVMQIKGGEQL-------KKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 142 ~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L-------~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
.++.++..+++....++..-+..+.....-+ ..|+..=..++.+. ..+...-+|-.+|.+||
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3444444444444445555544444333332 33333333344443 44456666667777665
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=26.73 E-value=6.6e+02 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQ 201 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 201 (210)
.+..++.....+-.+--++...+..++.+|.
T Consensus 660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~ 690 (880)
T PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRRE 690 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333333333333
No 73
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=26.58 E-value=5e+02 Score=23.75 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=27.9
Q ss_pred HHHHccCCCCCCCccccCCCCCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHhHH
Q psy14254 65 ERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVNLQ 119 (210)
Q Consensus 65 ~Rv~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~~~lehq~~R~~NLe 119 (210)
..|.+|.++-.||-.+|. .++.+|.+.+....-.+.||+
T Consensus 73 q~Vk~Gd~L~~iD~~~y~----------------~al~qAea~la~a~~~~~~~~ 111 (352)
T COG1566 73 QLVKKGDVLFRIDPRDYR----------------AALEQAEAALAAAEAQLRNLR 111 (352)
T ss_pred CEecCCCeEEEECcHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456678888778766664 777777877777777766654
No 74
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.97 E-value=2.4e+02 Score=19.76 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy14254 178 DWVGLVS 184 (210)
Q Consensus 178 ~W~~~v~ 184 (210)
.|.+.|.
T Consensus 57 ~~~~rl~ 63 (72)
T PF06005_consen 57 AWQERLR 63 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3433333
No 75
>KOG4807|consensus
Probab=25.94 E-value=5.7e+02 Score=24.21 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 142 QAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 142 ~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.++.+|.+.+.--.+|..-|+..|.+....-+.|+.==.++-.|.+++..-...||++-..||+
T Consensus 397 EmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRq 460 (593)
T KOG4807|consen 397 EMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQ 460 (593)
T ss_pred HHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555445566677888887776655555554445555666666666666666666655
No 76
>KOG1029|consensus
Probab=25.86 E-value=3.5e+02 Score=27.92 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 147 LIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 147 l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 198 (210)
+..+|.+|+.++..|-.+= .++..|..+-+++-.++..+-..-..|..
T Consensus 467 ~tt~kt~ie~~~~q~e~~i----sei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMI----SEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred cchHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3456778888888876543 34455555555555555444333333333
No 77
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.75 E-value=1.7e+02 Score=23.58 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 94 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEIN 158 (210)
Q Consensus 94 ~~~w~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN 158 (210)
.++|+++++... .+..+...-.++|..+|.. ++....+...++++--++.++.++++.-
T Consensus 86 ~~~w~~~~~~~~---~~~~L~~~d~e~L~~lg~~---LG~~D~~~Q~k~i~l~~~~L~~~~~~a~ 144 (170)
T PF09548_consen 86 AEAWEEAVEKLL---KESALKKEDKEILLELGKS---LGYSDREMQEKHIELYLEQLEQQLEEAR 144 (170)
T ss_pred HHHHHHHHHhhh---hcCCCCHHHHHHHHHHHHH---HccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999988755 3334455667888999886 4555555555555555555555554443
No 78
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.05 E-value=1.6e+02 Score=19.70 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy14254 169 GEQLKKLEADWVGLV 183 (210)
Q Consensus 169 ~~~L~~Le~~W~~~v 183 (210)
+..+..+++.-++++
T Consensus 27 ~~~ve~i~envk~ll 41 (55)
T PF05377_consen 27 SESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555544443
No 79
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.84 E-value=5.4e+02 Score=23.48 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=46.2
Q ss_pred HHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy14254 105 MSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEAD 178 (210)
Q Consensus 105 ~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~ 178 (210)
...+=|.-.|+.-|.-|..... .+......|+.....++..+..-+.-+..|+..=+..-..+...+..|+.+
T Consensus 311 ~~~lP~lv~RL~tL~~lH~~a~-~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~R 383 (388)
T PF04912_consen 311 APSLPSLVERLKTLKSLHEEAA-EFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEER 383 (388)
T ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777666655444 345557788888888888888888888888776444444444444444443
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.70 E-value=4.6e+02 Score=22.71 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHH
Q psy14254 98 TECVENSMSQLEHQSTRIVNLQL 120 (210)
Q Consensus 98 ~~al~na~~~lehq~~R~~NLeL 120 (210)
.++|..+.+.++-..-++.+++.
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~ 52 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEI 52 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666666665443
No 81
>PHA02047 phage lambda Rz1-like protein
Probab=24.49 E-value=3.1e+02 Score=20.59 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWE 160 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~ 160 (210)
...+.+.++.++..+....+.++.||..
T Consensus 36 a~~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 36 AKRQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999986
No 82
>PRK06851 hypothetical protein; Provisional
Probab=24.39 E-value=5e+02 Score=23.85 Aligned_cols=53 Identities=25% Similarity=0.324 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 145 SKLIQLRKEIQEINWERKVMQIKGGEQLKK---LEADWVGLVSKNYEIEQACVLLE 197 (210)
Q Consensus 145 ~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~---Le~~W~~~v~kn~eie~a~~~Le 197 (210)
..+...|++|-.+|.+.+.--..+..-|.. +...|......++..+.+..-.+
T Consensus 115 ~~l~~~k~eI~~~~~~~~~~~~~Ay~~l~~A~~ihdd~e~~y~~~md~~k~~~~~~ 170 (367)
T PRK06851 115 DKLRKHKEEILKINEEISRCFQRAYEYLNEALAIHDEWEKIYIENMDFAKANELTD 170 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 446677888888888888888888887776 78899999999888776655433
No 83
>KOG0161|consensus
Probab=23.91 E-value=1.1e+03 Score=26.86 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.++..+..+...+......++.+++..|..|. ++..|..+=.++=.++.+++.+...++.++.+++.
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~----ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~ 1533 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQ----EIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQA 1533 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666553 34444444444444444555555555555554444
No 84
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.78 E-value=2.5e+02 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHHhHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 105 MSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEI 157 (210)
Q Consensus 105 ~~~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~v 157 (210)
--.|++...|+.||+=..+.-+.. .+-+.+++..++.+++.|..++..|-.|
T Consensus 110 l~~L~e~snki~kLe~~~k~L~d~-Iv~~~~i~e~IKd~de~L~~I~d~iK~I 161 (163)
T PF03233_consen 110 LPTLEEISNKIRKLETEVKKLKDN-IVTEKLIEELIKDFDERLKEIRDKIKKI 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhh-ccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344777777999998888877777 8889999999999999999999877554
No 85
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=23.64 E-value=8e+02 Score=25.06 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKAK 209 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~~~ 209 (210)
+...+...+..+...+..++++.+..-+++.....--.-+..-+..+|..+...--+++..+..++.++..+..+-.+
T Consensus 180 nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (1179)
T TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEE 257 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 86
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.60 E-value=3.5e+02 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGE 170 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~ 170 (210)
...|...+++++.++..++.++..+...|...-.+.-.
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999998766544433
No 87
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.45 E-value=2.4e+02 Score=18.94 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEINWERKVM 164 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~ 164 (210)
..+...+..++++++.++.+++++....+.-
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666667777777777777766554443
No 88
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.34 E-value=3.3e+02 Score=20.50 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWE 160 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~ 160 (210)
.+.|...+..++..+.....+++.+-..
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQK 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544443
No 89
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.22 E-value=2.7e+02 Score=19.54 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 175 LEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 175 Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
-...+.+.+..|+++.+.+..|..|+..++.
T Consensus 34 ~~~~~~~~~keNieLKve~~~L~~el~~~~~ 64 (75)
T PF07989_consen 34 GPESIEELLKENIELKVEVESLKRELQEKKK 64 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999988776
No 90
>KOG4403|consensus
Probab=23.16 E-value=6.7e+02 Score=24.03 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q psy14254 131 EYLQTLVNCVSQAQSKLIQLRKE-----IQEINWERKVM 164 (210)
Q Consensus 131 ~~n~~Le~~~~~le~~l~~~r~~-----ie~vN~~RK~~ 164 (210)
-+....|..+..+++.|.+.+.+ ++.+|-+||..
T Consensus 252 e~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ 290 (575)
T KOG4403|consen 252 EGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD 290 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh
Confidence 34556677777788888887776 78888888887
No 91
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.01 E-value=1.8e+02 Score=19.98 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14254 185 KNYEIEQACVLLEKKIQILQAEKAK 209 (210)
Q Consensus 185 kn~eie~a~~~Le~ei~~~~~~~~~ 209 (210)
.+-|++.-+.-|+.||.+++.+..+
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888889999999999887554
No 92
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.41 E-value=2.1e+02 Score=21.44 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
-++|..+.+.+++++...+++|+++..
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777788877778888887754
No 93
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=22.34 E-value=2.1e+02 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 136 LVNCVSQAQSKLIQLRKEIQEINWE 160 (210)
Q Consensus 136 Le~~~~~le~~l~~~r~~ie~vN~~ 160 (210)
++..+.+|++++..+.+.|+.++..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888887753
No 94
>PF12980 DUF3864: Domain of Unknown Function with PDB structure (DUF3864); InterPro: IPR024335 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=22.24 E-value=20 Score=25.35 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=8.2
Q ss_pred CCCccccCCC
Q psy14254 75 PLSMIRYKLP 84 (210)
Q Consensus 75 ~lD~sRY~l~ 84 (210)
-||++||.++
T Consensus 17 vidftrydl~ 26 (82)
T PF12980_consen 17 VIDFTRYDLK 26 (82)
T ss_dssp EEEEEESSS-
T ss_pred Eeeeeecccc
Confidence 4999999984
No 95
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.99 E-value=6.8e+02 Score=23.28 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy14254 142 QAQSKLIQLRKEIQEINWERKVMQIKGGE 170 (210)
Q Consensus 142 ~le~~l~~~r~~ie~vN~~RK~~Q~~~~~ 170 (210)
.+.++..++..+++.+..+|+.-....+.
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655554
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.97 E-value=5.5e+02 Score=22.22 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=20.1
Q ss_pred HHHHccCCCCCCCccccCCCCCCCCCCCcHHHHHHHHHHHHHHHhHHHHHHHh
Q psy14254 65 ERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQLEHQSTRIVN 117 (210)
Q Consensus 65 ~Rv~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~~~lehq~~R~~N 117 (210)
++|.+|+++-.||.+.| ...+..+.+++......+..
T Consensus 62 ~~V~kGq~L~~ld~~~~----------------~~~l~~a~a~l~~~~~~~~~ 98 (334)
T TIGR00998 62 DYVKQGDVLVRLDPTNA----------------ELALAKAEANLAALVRQTKQ 98 (334)
T ss_pred CEEcCCCEEEEECchHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 46667777766664333 24455566655554444433
No 97
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.63 E-value=4.6e+02 Score=21.16 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEINWE-RKVMQIKGGEQLKKLEADWVGLVSKNYE-IEQACVLLEK 198 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~-RK~~Q~~~~~~L~~Le~~W~~~v~kn~e-ie~a~~~Le~ 198 (210)
.....+.....++..|.+.+.+.+.|=.. |..-..++..+-..++..=+.++..++. |...+..++.
T Consensus 56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~ 124 (155)
T PRK06569 56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRT 124 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888888888888776 8888888888888888888888777655 4444444443
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.07 E-value=1.1e+03 Score=25.34 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKAK 209 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~~~ 209 (210)
+..+......+++++..++..+.++...+-....... ....|+.+=.+++..+-++..++..++.+|..+...-.+
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~ 920 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEK 920 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Done!