Query psy14254
Match_columns 210
No_of_seqs 113 out of 187
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 23:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmx_A Voltage-gated hydrogen 90.9 1 3.5E-05 28.5 6.4 37 169-205 3-39 (48)
2 3o0z_A RHO-associated protein 90.8 2.5 8.5E-05 33.6 10.1 73 132-205 4-76 (168)
3 3ol1_A Vimentin; structural ge 85.8 6.3 0.00021 29.2 9.0 25 141-165 16-40 (119)
4 3a2a_A Voltage-gated hydrogen 83.0 3.3 0.00011 26.8 5.4 41 165-205 6-46 (58)
5 1gk7_A Vimentin; intermediate 82.4 4.9 0.00017 24.1 5.8 34 169-202 5-38 (39)
6 3viq_A SWI5-dependent recombin 79.8 12 0.0004 28.0 8.5 54 135-188 4-57 (122)
7 3mq9_A Bone marrow stromal ant 79.4 33 0.0011 30.3 15.2 79 120-205 385-464 (471)
8 3i00_A HIP-I, huntingtin-inter 76.2 21 0.00074 26.5 10.6 67 137-203 14-80 (120)
9 2v71_A Nuclear distribution pr 75.5 30 0.001 27.8 17.1 63 143-205 61-123 (189)
10 1wt6_A Myotonin-protein kinase 73.2 21 0.0007 24.9 10.1 60 138-205 14-73 (81)
11 3s4r_A Vimentin; alpha-helix, 72.6 7.8 0.00027 27.5 5.5 13 193-205 58-70 (93)
12 2dfs_A Myosin-5A; myosin-V, in 71.2 45 0.0015 33.5 12.4 66 132-197 978-1043(1080)
13 2oqq_A Transcription factor HY 66.6 19 0.00065 21.9 5.8 35 172-206 5-39 (42)
14 1jnm_A Proto-oncogene C-JUN; B 62.2 24 0.00081 22.8 5.8 36 170-205 22-57 (62)
15 1ci6_A Transcription factor AT 62.0 27 0.00094 22.7 6.1 36 170-205 23-58 (63)
16 1t2k_D Cyclic-AMP-dependent tr 60.3 31 0.0011 22.1 6.3 36 171-206 23-58 (61)
17 3ghg_A Fibrinogen alpha chain; 58.8 33 0.0011 31.9 8.0 35 98-134 52-86 (562)
18 3mq9_A Bone marrow stromal ant 57.2 1E+02 0.0034 27.1 12.4 12 193-204 445-456 (471)
19 2hy6_A General control protein 56.6 18 0.00062 20.9 3.8 26 172-197 3-28 (34)
20 3c3f_A Alpha/beta peptide with 55.6 28 0.00095 20.1 4.8 25 172-196 3-27 (34)
21 1uo4_A General control protein 52.3 23 0.0008 20.5 3.8 26 172-197 3-28 (34)
22 3c3g_A Alpha/beta peptide with 52.0 32 0.0011 19.8 4.6 25 172-196 2-26 (33)
23 2eqb_B RAB guanine nucleotide 51.7 63 0.0022 23.1 7.8 77 130-206 11-91 (97)
24 3swk_A Vimentin; cytoskeleton, 51.3 58 0.002 22.5 7.1 15 188-202 67-81 (86)
25 2ocy_A RAB guanine nucleotide 51.1 84 0.0029 24.3 10.5 26 98-123 19-44 (154)
26 2bni_A General control protein 50.8 24 0.00082 20.4 3.7 26 171-196 2-27 (34)
27 2v66_B Nuclear distribution pr 50.3 72 0.0025 23.3 12.0 57 124-185 17-78 (111)
28 1p9i_A Cortexillin I/GCN4 hybr 49.2 25 0.00084 19.4 3.4 25 134-158 2-26 (31)
29 2oxj_A Hybrid alpha/beta pepti 48.1 38 0.0013 19.6 5.0 27 172-205 3-29 (34)
30 2wq1_A General control protein 47.2 39 0.0013 19.4 4.6 25 172-196 2-26 (33)
31 2v71_A Nuclear distribution pr 47.0 1.1E+02 0.0037 24.5 12.1 16 140-155 90-105 (189)
32 2e7s_A RAB guanine nucleotide 43.9 35 0.0012 26.0 4.8 22 101-122 10-31 (135)
33 3m91_A Proteasome-associated A 43.4 42 0.0014 21.1 4.4 26 132-157 24-49 (51)
34 2wt7_A Proto-oncogene protein 42.0 68 0.0023 20.7 6.1 35 171-205 24-58 (63)
35 3m48_A General control protein 41.0 41 0.0014 19.3 3.6 25 172-196 2-26 (33)
36 1uuj_A Platelet-activating fac 40.4 9 0.00031 27.1 1.0 28 174-201 52-82 (88)
37 3oja_B Anopheles plasmodium-re 39.2 2.1E+02 0.0073 25.6 12.3 80 127-209 459-548 (597)
38 4h22_A Leucine-rich repeat fli 39.2 1.1E+02 0.0037 22.2 11.6 74 122-208 9-82 (103)
39 2v66_B Nuclear distribution pr 36.5 1.2E+02 0.0042 22.1 11.3 19 168-186 75-93 (111)
40 1fmh_A General control protein 35.2 60 0.002 18.1 4.2 25 174-198 5-29 (33)
41 1zke_A Hypothetical protein HP 34.4 38 0.0013 23.3 3.3 23 140-162 54-76 (83)
42 2dgc_A Protein (GCN4); basic d 33.4 98 0.0034 20.0 6.9 32 171-209 31-62 (63)
43 2r2v_A GCN4 leucine zipper; co 32.9 73 0.0025 18.4 5.1 25 171-195 2-26 (34)
44 1k1f_A Breakpoint cluster regi 32.2 68 0.0023 21.5 4.2 31 133-163 25-55 (72)
45 2odv_A Plectin 1, HD1; plakin 31.6 2.1E+02 0.0071 23.2 10.3 48 138-185 172-219 (235)
46 2dgc_A Protein (GCN4); basic d 31.5 1.1E+02 0.0037 19.8 5.2 27 131-157 30-56 (63)
47 3vmx_A Voltage-gated hydrogen 30.9 98 0.0034 19.3 5.3 31 133-163 13-43 (48)
48 1kd8_A GABH AIV, GCN4 acid bas 30.2 85 0.0029 18.3 4.5 28 172-199 3-30 (36)
49 2dfs_A Myosin-5A; myosin-V, in 28.3 4.6E+02 0.016 26.2 13.9 32 134-165 1019-1050(1080)
50 3uul_A Utrophin; spectrin repe 28.2 1.4E+02 0.0049 20.3 12.9 55 134-188 39-103 (118)
51 3lay_A Zinc resistance-associa 27.6 1.5E+02 0.005 23.3 6.3 35 171-205 93-127 (175)
52 3ra3_B P2F; coiled coil domain 27.1 63 0.0021 17.4 2.7 22 182-203 5-26 (28)
53 1dh3_A Transcription factor CR 25.8 1.3E+02 0.0044 18.9 5.0 28 131-158 22-49 (55)
54 1kd8_B GABH BLL, GCN4 acid bas 25.3 1.1E+02 0.0037 17.9 5.0 28 171-198 2-29 (36)
55 1lq7_A Alpha3W; three helix bu 24.5 79 0.0027 20.3 3.3 37 165-201 20-65 (67)
56 3t98_B Nucleoporin NUP58/NUP45 23.8 1.9E+02 0.0065 20.2 11.7 76 132-207 6-88 (93)
57 3he5_A Synzip1; heterodimeric 23.8 1.3E+02 0.0043 18.2 6.7 33 174-206 14-46 (49)
58 3s4r_A Vimentin; alpha-helix, 23.0 1.9E+02 0.0066 20.0 12.2 36 171-206 57-92 (93)
59 1nkp_B MAX protein, MYC proto- 22.5 1.6E+02 0.0054 19.7 5.0 14 99-112 40-53 (83)
60 1ci6_A Transcription factor AT 21.9 96 0.0033 20.0 3.5 24 133-156 39-62 (63)
61 3m9b_A Proteasome-associated A 20.9 1.3E+02 0.0043 25.2 4.8 38 169-206 53-90 (251)
62 4emc_A Monopolin complex subun 20.7 3.2E+02 0.011 21.7 7.4 37 133-169 29-65 (190)
63 2jee_A YIIU; FTSZ, septum, coi 20.4 2.2E+02 0.0074 19.6 7.0 9 177-185 65-73 (81)
64 3f31_A Spectrin alpha chain, b 20.2 2.2E+02 0.0076 20.7 5.8 46 141-186 88-140 (149)
No 1
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=90.94 E-value=1 Score=28.46 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 169 GEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 169 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
..+|..|.+-.-.++.++-+++.-|.++++||.++++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3467788888999999999999999999999999876
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.81 E-value=2.5 Score=33.58 Aligned_cols=73 Identities=22% Similarity=0.106 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
+|+-...+.+.+...-..+|.+.|.+.+.|| .|++....+..++..-+++..++-.++.+...|+.++..+..
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK-~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRK-SHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666677778889999999877 477888899999999999999998888888888888876654
No 3
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.80 E-value=6.3 Score=29.21 Aligned_cols=25 Identities=8% Similarity=0.357 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 141 SQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 141 ~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
..++..+..+|++|+.++..|-.-+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444444
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=82.96 E-value=3.3 Score=26.84 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=31.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 165 QIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 165 Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
++.+..++..|.+-=..++.|.-+++.-|.+.++||.+|.+
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777888999999999999999999999875
No 5
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=82.39 E-value=4.9 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 169 GEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQI 202 (210)
Q Consensus 169 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~ 202 (210)
..++..|..++..++.|+-.+|..+..|+.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999998853
No 6
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=79.84 E-value=12 Score=28.04 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy14254 135 TLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYE 188 (210)
Q Consensus 135 ~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~e 188 (210)
.|-.....|++++..++++++.+....|.....-..+|..|=.+|+.-....++
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aae 57 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 344556779999999999999999999999999999999999999987775544
No 7
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.39 E-value=33 Score=30.32 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHhhhCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 120 LMLEYGPE-TWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 120 Ll~~~g~n-aW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 198 (210)
+|.++..+ -+.-....|..-+.++++.+..++++--.+|+.=-.-| .+|+.+-.++..|.-|+|..+..|++
T Consensus 385 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T 3mq9_A 385 ARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNH 457 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544 33444677888888889999999999888888766666 44555555555566666666666666
Q ss_pred HHHHHHH
Q psy14254 199 KIQILQA 205 (210)
Q Consensus 199 ei~~~~~ 205 (210)
+|..++.
T Consensus 458 ~~~~~~~ 464 (471)
T 3mq9_A 458 KLQDASA 464 (471)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 8
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.21 E-value=21 Score=26.50 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 137 VNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQIL 203 (210)
Q Consensus 137 e~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~ 203 (210)
+..+.+|..++..++.+++.|-..-..........+..|+..--..=.-.-+.-..|..|+.++..+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444444444444444443332222222333445555555544
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.51 E-value=30 Score=27.80 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 143 AQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 143 le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
|+..+..++.+++..-..=+..+..+...+..|+..-..+-..+-.+..-|..||...+++.+
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333333333333332233333444445555555444444444444444444444444433
No 10
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.19 E-value=21 Score=24.87 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 138 NCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 138 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
++...|+.++....---+++++.|-..+ .++.+-++.-.+|-++..-...|+.++.+++.
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni--------~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQ--------NFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6678889999988888888988765544 34445556666787888888888888888764
No 11
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.61 E-value=7.8 Score=27.51 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy14254 193 CVLLEKKIQILQA 205 (210)
Q Consensus 193 ~~~Le~ei~~~~~ 205 (210)
+..|+.+|..+..
T Consensus 58 i~~Lr~~i~~~~~ 70 (93)
T 3s4r_A 58 MRELRRQVDQLTN 70 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=71.21 E-value=45 Score=33.53 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLE 197 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 197 (210)
-+..+++.+..++.+++.++++++..++..+..+.........|+.+=..+-.-|-.++.....|+
T Consensus 978 e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 978 EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999988887766555444555443333333333333333333
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.64 E-value=19 Score=21.89 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
+..||.+-+++-.+|-++|.-+--|++|..-||+.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 56799999999999999999999999888877763
No 14
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.19 E-value=24 Score=22.80 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
..+..|+.+...+-..|-++..-+..|+.|+..|+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888898888888888888887764
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.05 E-value=27 Score=22.72 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 170 EQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 170 ~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.....|+.+-.++-..|-+++.-+..|+.||..|+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888999999999999999999998875
No 16
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.29 E-value=31 Score=22.13 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
.+..|+.+-..+-..|-++...+..|+.|+..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999988753
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.78 E-value=33 Score=31.89 Aligned_cols=35 Identities=9% Similarity=0.178 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHhhhCHHHHHHHHH
Q psy14254 98 TECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQ 134 (210)
Q Consensus 98 ~~al~na~~~lehq~~R~~NLeLl~~~g~naW~~~n~ 134 (210)
+..|....--+...-..+.| .+..+..|.+-++.+
T Consensus 52 QglLdkqErDltkrINELKn--qLEdlsKnsKdseqy 86 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKN--SLFEYQKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHH--HHHHHHhhchhHHHH
Confidence 56666666666555555555 566666665555543
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.24 E-value=1e+02 Score=27.09 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy14254 193 CVLLEKKIQILQ 204 (210)
Q Consensus 193 ~~~Le~ei~~~~ 204 (210)
+.+||.||-.+.
T Consensus 445 ~~~~~~~~~~~~ 456 (471)
T 3mq9_A 445 VEELEGEITTLN 456 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 19
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=56.61 E-value=18 Score=20.95 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLLE 197 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~Le 197 (210)
++.||.+-.+++++|.+++.+...|+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888899998877666655554
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=55.64 E-value=28 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
+..||.+-.+++++|.+++.....|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5678999999999986655444443
No 21
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=52.27 E-value=23 Score=20.50 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLLE 197 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~Le 197 (210)
++.||.+-.+++++|.+++.....|.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56789999999999976655544443
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=51.98 E-value=32 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
++.||.+-.+++++|.+++.....|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4678999999999986655444444
No 23
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.73 E-value=63 Score=23.12 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy14254 130 KEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIK---GGEQLKKLEADWVGLVSKNYE-IEQACVLLEKKIQILQA 205 (210)
Q Consensus 130 ~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~---~~~~L~~Le~~W~~~v~kn~e-ie~a~~~Le~ei~~~~~ 205 (210)
+-...+|+..+..++.++..+...+.+-...|...... ...+|..|...-.+--.+.+- -..++..++..+.+|+.
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~ 90 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTE 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666667777777666666655555443322 223444444433332222111 12333444444555554
Q ss_pred H
Q psy14254 206 E 206 (210)
Q Consensus 206 ~ 206 (210)
+
T Consensus 91 q 91 (97)
T 2eqb_B 91 Q 91 (97)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=51.26 E-value=58 Score=22.52 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy14254 188 EIEQACVLLEKKIQI 202 (210)
Q Consensus 188 eie~a~~~Le~ei~~ 202 (210)
++|.-+..|..||.-
T Consensus 67 dLE~kvesL~eEl~f 81 (86)
T 3swk_A 67 DLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 25
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.09 E-value=84 Score=24.33 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhHHHHhh
Q psy14254 98 TECVENSMSQLEHQSTRIVNLQLMLE 123 (210)
Q Consensus 98 ~~al~na~~~lehq~~R~~NLeLl~~ 123 (210)
...|..++..++-+..|+..|+.+..
T Consensus 19 eD~L~~~R~el~~~~~ri~~lE~~r~ 44 (154)
T 2ocy_A 19 EEQLNKSLKTIASQKAAIENYNQLKE 44 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665543
No 26
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=50.82 E-value=24 Score=20.44 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
.++.||.+-.+++++|.+++.....|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 35678999999999985554443333
No 27
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.26 E-value=72 Score=23.35 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=25.9
Q ss_pred hCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14254 124 YGPETWKEYLQTLV----NCVSQAQSKLIQLRKEIQEINW-ERKVMQIKGGEQLKKLEADWVGLVSK 185 (210)
Q Consensus 124 ~g~naW~~~n~~Le----~~~~~le~~l~~~r~~ie~vN~-~RK~~Q~~~~~~L~~Le~~W~~~v~k 185 (210)
|-...|+.-..+.. .....|++++..++..-+.+-. -|+..|. ...||+.-+-.++.
T Consensus 17 ~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~-----NDDLER~~R~t~~S 78 (111)
T 2v66_B 17 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA-----NDDLERAKRATIVS 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHhh
Confidence 33455555443332 2344555555555555544432 2444442 23445444444443
No 28
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.18 E-value=25 Score=19.42 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEIN 158 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN 158 (210)
++|.+++.+++.+-..++..++++=
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888887777653
No 29
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=48.11 E-value=38 Score=19.56 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
+..||.+-.+++.+|- .|+.||.+||.
T Consensus 3 MnQLE~kVEeLl~~n~-------~Le~eV~rLk~ 29 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNX-------HLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh-------hHHHHHHHHHH
Confidence 5678888888888884 45555665554
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.22 E-value=39 Score=19.40 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
++.||.+-.++++++.+++..+..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899889999886655444443
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.00 E-value=1.1e+02 Score=24.46 Aligned_cols=16 Identities=31% Similarity=0.219 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14254 140 VSQAQSKLIQLRKEIQ 155 (210)
Q Consensus 140 ~~~le~~l~~~r~~ie 155 (210)
...|++++..++...+
T Consensus 90 ~~~Lq~el~~l~~~~~ 105 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKE 105 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 32
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.92 E-value=35 Score=25.97 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHHHHhHHHHh
Q psy14254 101 VENSMSQLEHQSTRIVNLQLML 122 (210)
Q Consensus 101 l~na~~~lehq~~R~~NLeLl~ 122 (210)
|..+...+.-+..++..++.+.
T Consensus 10 L~~~r~~l~~~~~~~~~le~l~ 31 (135)
T 2e7s_A 10 LNKSLKTIASQKAAIENYNQLK 31 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 33
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.42 E-value=42 Score=21.15 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEI 157 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~v 157 (210)
.|..|...++....+|..++.+|+.+
T Consensus 24 rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 24 RNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777888888888888877765
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.02 E-value=68 Score=20.67 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
.+..|+.+...+-..|-.+...+..|+.|+..|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888888888765
No 35
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.98 E-value=41 Score=19.34 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
+..||.+-.+++.+|.+++..+..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4568888888888885544443333
No 36
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=40.45 E-value=9 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=18.3
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVS---KNYEIEQACVLLEKKIQ 201 (210)
Q Consensus 174 ~Le~~W~~~v~---kn~eie~a~~~Le~ei~ 201 (210)
-||.+|..-|+ |++++|.-+..|+.|+.
T Consensus 52 LLEKKWTSViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 52 LLEKKWTSVIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999987654 57777777777766654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.24 E-value=2.1e+02 Score=25.61 Aligned_cols=80 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 127 ETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQ----------IKGGEQLKKLEADWVGLVSKNYEIEQACVLL 196 (210)
Q Consensus 127 naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q----------~~~~~~L~~Le~~W~~~v~kn~eie~a~~~L 196 (210)
+.+..-...++......++.++..+.++++ .|...+ ...+.++..++++-.....++-..+.+..+.
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDT---NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHhc
Q psy14254 197 EKKIQILQAEKAK 209 (210)
Q Consensus 197 e~ei~~~~~~~~~ 209 (210)
..+.+.++++..+
T Consensus 536 ~~~~~~~~~~~~~ 548 (597)
T 3oja_B 536 QKETEDLEQENIA 548 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHH
No 38
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.23 E-value=1.1e+02 Score=22.16 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=43.9
Q ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 122 LEYGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQ 201 (210)
Q Consensus 122 ~~~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 201 (210)
.+|.+. .+.|.+|++....+.=++.-+|..+++.--. +..+.+..++.++..-....+|..|..++.
T Consensus 9 EKyrKA--MVsnAQLDNEKsal~YqVdlLKD~LEe~eE~-----------~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 9 EKYKKA--MVSNAQLDNEKTNFMYQVDTLKDMLLELEEQ-----------LAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp CTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554 6778888888888887777777777765432 233333333333333335556666666666
Q ss_pred HHHHHHh
Q psy14254 202 ILQAEKA 208 (210)
Q Consensus 202 ~~~~~~~ 208 (210)
.++.+-.
T Consensus 76 ~lk~~L~ 82 (103)
T 4h22_A 76 EVKEALK 82 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665433
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.52 E-value=1.2e+02 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy14254 168 GGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 168 ~~~~L~~Le~~W~~~v~kn 186 (210)
+..-|..++.+....|-+|
T Consensus 75 t~~SLeD~E~k~n~aiErn 93 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 3344455555555555554
No 40
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=35.19 E-value=60 Score=18.08 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 174 ~Le~~W~~~v~kn~eie~a~~~Le~ 198 (210)
.|+..-.+.-..||++|....+|+.
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444433444445555444444443
No 41
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=34.38 E-value=38 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 140 VSQAQSKLIQLRKEIQEINWERK 162 (210)
Q Consensus 140 ~~~le~~l~~~r~~ie~vN~~RK 162 (210)
+.++..++.++|..|+.+|+..|
T Consensus 54 ~~QideeV~~LKe~IdaLNK~Kk 76 (83)
T 1zke_A 54 FTQLSEEVERLKELINALNKIKK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999998754
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.43 E-value=98 Score=20.03 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKAK 209 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~~~~ 209 (210)
.+..|+.+...+-..| ..|+.+|..|+..-++
T Consensus 31 ~~~~Le~~v~~L~~eN-------~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKN-------YHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 3555666665555444 5666777777665443
No 43
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=32.90 E-value=73 Score=18.38 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVL 195 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~ 195 (210)
.++.|+.+-.+++++++.++-....
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHH
Confidence 3677889989999998665443333
No 44
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=32.24 E-value=68 Score=21.45 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKV 163 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 163 (210)
...+..+...|++.-..+|+--++||++|=+
T Consensus 25 l~~vgdiEqeLe~Ck~sIrrLE~evn~ErFr 55 (72)
T 1k1f_A 25 LRSVGDIEQELERAKASIRRLEQEVNQERFR 55 (72)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567888888999999999999999998854
No 45
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=31.61 E-value=2.1e+02 Score=23.25 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14254 138 NCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSK 185 (210)
Q Consensus 138 ~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~k 185 (210)
.-+..++..+..+-..++.++..|=..=.........|..+|..+...
T Consensus 172 ~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~ 219 (235)
T 2odv_A 172 RDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTE 219 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544444444555666677777777654
No 46
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.46 E-value=1.1e+02 Score=19.85 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 131 EYLQTLVNCVSQAQSKLIQLRKEIQEI 157 (210)
Q Consensus 131 ~~n~~Le~~~~~le~~l~~~r~~ie~v 157 (210)
-+...|+.-...|+.+...++.+|+.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777776665544
No 47
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=30.94 E-value=98 Score=19.27 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKV 163 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~ 163 (210)
|.+|..-...++..-.++.++|+.+|+-=|.
T Consensus 13 n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 13 NIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 6777777778888888888888888876543
No 48
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=30.25 E-value=85 Score=18.32 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 172 LKKLEADWVGLVSKNYEIEQACVLLEKK 199 (210)
Q Consensus 172 L~~Le~~W~~~v~kn~eie~a~~~Le~e 199 (210)
++.||.+-.+++++|.+++.....|+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4568888888888886666655555543
No 49
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.34 E-value=4.6e+02 Score=26.20 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEINWERKVMQ 165 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q 165 (210)
..|+..+..|+++...+++++++++......+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777778888887775444433
No 50
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.23 E-value=1.4e+02 Score=20.27 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------HhhHHHHHHHHHHHHHHHHHHHH
Q psy14254 134 QTLVNCVSQAQSKLIQLRKEIQEINWE-RKVMQ---------IKGGEQLKKLEADWVGLVSKNYE 188 (210)
Q Consensus 134 ~~Le~~~~~le~~l~~~r~~ie~vN~~-RK~~Q---------~~~~~~L~~Le~~W~~~v~kn~e 188 (210)
..+-.-.+.+++++...+..|+.||.. ++..+ .....++..|..+|..+....-+
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 103 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESME 103 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566788888888888888865 33322 13456788899999999987654
No 51
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.63 E-value=1.5e+02 Score=23.25 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~ 205 (210)
++.........++...--=+.++.+|-.||.+++.
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~ 127 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQ 127 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 34455555555554211112333444444444443
No 52
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.08 E-value=63 Score=17.36 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14254 182 LVSKNYEIEQACVLLEKKIQIL 203 (210)
Q Consensus 182 ~v~kn~eie~a~~~Le~ei~~~ 203 (210)
+-.||..+...+..||-||..+
T Consensus 5 lkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 3445666666666777776654
No 53
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=25.79 E-value=1.3e+02 Score=18.90 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 131 EYLQTLVNCVSQAQSKLIQLRKEIQEIN 158 (210)
Q Consensus 131 ~~n~~Le~~~~~le~~l~~~r~~ie~vN 158 (210)
.|...|+.-+..|+.+...++.++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888887776653
No 54
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=25.35 E-value=1.1e+02 Score=17.88 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEK 198 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ 198 (210)
.+..||.+-.+++++|.+++.....|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567888888888888666555555543
No 55
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.54 E-value=79 Score=20.25 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Q psy14254 165 QIKGGEQLKKLEADWVGLVSKNYE---------IEQACVLLEKKIQ 201 (210)
Q Consensus 165 Q~~~~~~L~~Le~~W~~~v~kn~e---------ie~a~~~Le~ei~ 201 (210)
-.--|..+..|..+|.++-.+.-+ ++.....|+.||.
T Consensus 20 alggggrieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 20 ALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 345677888999999998776544 3455556665554
No 56
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=23.85 E-value=1.9e+02 Score=20.24 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 132 YLQTLVNCVSQAQSKLIQLRKEIQEINWERKV----MQ---IKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204 (210)
Q Consensus 132 ~n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~----~Q---~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~ 204 (210)
-+.........+++.|...|..|+++++.=.. .+ .+.-..|+.+......+.++..+|-..+..+..+-..++
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~r 85 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYR 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999875322 12 245667888888999999999888888888888887777
Q ss_pred HHH
Q psy14254 205 AEK 207 (210)
Q Consensus 205 ~~~ 207 (210)
+.-
T Consensus 86 r~~ 88 (93)
T 3t98_B 86 KMF 88 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 57
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.81 E-value=1.3e+02 Score=18.16 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 174 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
+|+..=..+-.||+--.--+.-|+.||..+|.+
T Consensus 14 slenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 14 SLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444445566666666554
No 58
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=23.04 E-value=1.9e+02 Score=20.03 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 171 QLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 171 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
.|..|...-.++...+..++..+..|..++.++|.+
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444555555566666666653
No 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.46 E-value=1.6e+02 Score=19.66 Aligned_cols=14 Identities=0% Similarity=0.145 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhHHH
Q psy14254 99 ECVENSMSQLEHQS 112 (210)
Q Consensus 99 ~al~na~~~lehq~ 112 (210)
..|..|-.++.+..
T Consensus 40 ~iL~~Ai~YI~~L~ 53 (83)
T 1nkp_B 40 QILDKATEYIQYMR 53 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 60
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=21.90 E-value=96 Score=19.99 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQE 156 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~ 156 (210)
|..|...+..|+.++..++..+.+
T Consensus 39 N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 39 NEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555544433
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.92 E-value=1.3e+02 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 169 GEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAE 206 (210)
Q Consensus 169 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~~~~~ 206 (210)
...++.|+.+-..+-.+|--+..++..++.||..++.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777766777777777777777764
No 62
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=20.75 E-value=3.2e+02 Score=21.74 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy14254 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGG 169 (210)
Q Consensus 133 n~~Le~~~~~le~~l~~~r~~ie~vN~~RK~~Q~~~~ 169 (210)
|..|...+...+.++..++++++.++...+..|....
T Consensus 29 n~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 29 NFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444444445556666666666666665555554443
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=20.38 E-value=2.2e+02 Score=19.59 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy14254 177 ADWVGLVSK 185 (210)
Q Consensus 177 ~~W~~~v~k 185 (210)
..|.+.|.+
T Consensus 65 ~~wq~Rl~~ 73 (81)
T 2jee_A 65 NGWQERLQA 73 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 64
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=20.20 E-value=2.2e+02 Score=20.74 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-H------HHHhhHHHHHHHHHHHHHHHHHH
Q psy14254 141 SQAQSKLIQLRKEIQEINWERK-V------MQIKGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 141 ~~le~~l~~~r~~ie~vN~~RK-~------~Q~~~~~~L~~Le~~W~~~v~kn 186 (210)
+.++.++......++.|+..-. . .-..+...+..|...|..++.+.
T Consensus 88 ~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~ 140 (149)
T 3f31_A 88 QAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKM 140 (149)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566655566666554321 1 22345667888999999888765
Done!