Query psy14254
Match_columns 210
No_of_seqs 113 out of 187
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 23:18:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 43.5 21 0.0015 23.3 5.3 57 141-200 47-110 (114)
2 d1s35a2 a.7.1.1 (A:1169-1273) 39.2 41 0.003 21.2 6.3 61 124-186 28-95 (105)
3 d1u5pa2 a.7.1.1 (A:1772-1872) 39.1 31 0.0023 21.5 5.5 43 144-186 51-93 (101)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 35.7 17 0.0012 23.2 3.3 23 140-162 52-74 (79)
5 d2cp8a1 a.5.2.1 (A:8-48) Migra 31.7 15 0.0011 20.7 2.2 22 113-134 16-37 (41)
6 d1uuja_ a.221.1.1 (A:) Lissenc 27.3 20 0.0014 23.0 2.6 26 174-203 49-74 (76)
7 d1cuna2 a.7.1.1 (A:116-219) Sp 26.3 70 0.0051 19.9 7.3 23 164-186 70-92 (104)
8 d1lvfa_ a.47.2.1 (A:) Syntaxin 25.2 70 0.0051 21.0 5.5 37 169-205 15-63 (106)
9 d1ivsa1 a.2.7.3 (A:797-862) Va 20.3 72 0.0052 18.9 4.3 24 136-159 2-25 (66)
10 d1u5pa1 a.7.1.1 (A:1662-1771) 18.7 88 0.0064 19.5 4.8 20 167-186 78-97 (110)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.46 E-value=21 Score=23.33 Aligned_cols=57 Identities=14% Similarity=0.288 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 141 SQAQSKLIQLRKEIQEINWERKVMQ-------IKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKI 200 (210)
Q Consensus 141 ~~le~~l~~~r~~ie~vN~~RK~~Q-------~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei 200 (210)
+.+++++......|+.|+..=+.-. ..+...+..|..+|..+....-... ..|+.+|
T Consensus 47 ~~~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R~---~~Le~~i 110 (114)
T d1hcia4 47 KQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTI---NEVETQI 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3455555666666666655444333 3456689999999999998754432 4445443
No 2
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.15 E-value=41 Score=21.17 Aligned_cols=61 Identities=10% Similarity=-0.069 Sum_probs=36.2
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14254 124 YGPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWE-------RKVMQIKGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 124 ~g~naW~~~n~~Le~~~~~le~~l~~~r~~ie~vN~~-------RK~~Q~~~~~~L~~Le~~W~~~v~kn 186 (210)
+|.+ ......+-.-.+.+++.+......|+.|+.. .-.....+...+..|..+|..+....
T Consensus 28 ~g~d--l~~v~~l~k~h~~l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~ 95 (105)
T d1s35a2 28 PPDS--LEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 95 (105)
T ss_dssp CCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5654 2333444444555566666666665555442 22344466678888999999887764
No 3
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=39.13 E-value=31 Score=21.50 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14254 144 QSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 144 e~~l~~~r~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn 186 (210)
+..+..+....+.+-.............+..|..+|..+....
T Consensus 51 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~ 93 (101)
T d1u5pa2 51 EPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344456677888999998887764
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=35.73 E-value=17 Score=23.21 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 140 VSQAQSKLIQLRKEIQEINWERK 162 (210)
Q Consensus 140 ~~~le~~l~~~r~~ie~vN~~RK 162 (210)
+.++..++.++|.+|+.+|+-.|
T Consensus 52 l~qid~ev~kLK~~IdaLNKiKk 74 (79)
T d1zkea1 52 FTQLSEEVERLKELINALNKIKK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999998654
No 5
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.72 E-value=15 Score=20.73 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=16.6
Q ss_pred HHHHhHHHHhhhCHHHHHHHHH
Q psy14254 113 TRIVNLQLMLEYGPETWKEYLQ 134 (210)
Q Consensus 113 ~R~~NLeLl~~~g~naW~~~n~ 134 (210)
.|..|+.||.||+-|.-.+-++
T Consensus 16 DR~lNq~LL~KH~~nl~~vV~e 37 (41)
T d2cp8a1 16 DRQLNLRLLKKHNYNILQVVTE 37 (41)
T ss_dssp CHHHHHHHHTTTTTCHHHHHHH
T ss_pred hhHHHHHHHHHccCcHHHHHHH
Confidence 4788999999998876554444
No 6
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.26 E-value=20 Score=23.00 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 174 KLEADWVGLVSKNYEIEQACVLLEKKIQIL 203 (210)
Q Consensus 174 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~~ 203 (210)
-||.+|...|+ +..-+..||.++..+
T Consensus 49 lLEKKWtSViR----LQkKImdLE~~~~~l 74 (76)
T d1uuja_ 49 LLEKKWTSVIR----LQKKVMELESKLNEA 74 (76)
T ss_dssp HHHHHHTCHHH----HHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHH----HHHHHHHHHHHHHHh
Confidence 39999965443 555555555555443
No 7
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.25 E-value=70 Score=19.87 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy14254 164 MQIKGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 164 ~Q~~~~~~L~~Le~~W~~~v~kn 186 (210)
........+..|+.+|..+....
T Consensus 70 ~~~~I~~~~~~l~~~w~~L~~~~ 92 (104)
T d1cuna2 70 HVENITAKMKGLKGKVSDLEKAA 92 (104)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888898887764
No 8
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.22 E-value=70 Score=20.97 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Q psy14254 169 GEQLKKLEADWVGLVS------------KNYEIEQACVLLEKKIQILQA 205 (210)
Q Consensus 169 ~~~L~~Le~~W~~~v~------------kn~eie~a~~~Le~ei~~~~~ 205 (210)
...+.+|-.+|..+.. -.-++..+|..++-++.+|.+
T Consensus 15 ~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~ 63 (106)
T d1lvfa_ 15 VNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDE 63 (106)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445556666655432 133577777777777777665
No 9
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.29 E-value=72 Score=18.90 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14254 136 LVNCVSQAQSKLIQLRKEIQEINW 159 (210)
Q Consensus 136 Le~~~~~le~~l~~~r~~ie~vN~ 159 (210)
++..+.+|++.+..+..+|+.++.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~ 25 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQR 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888877765
No 10
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=18.69 E-value=88 Score=19.49 Aligned_cols=20 Identities=5% Similarity=0.119 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy14254 167 KGGEQLKKLEADWVGLVSKN 186 (210)
Q Consensus 167 ~~~~~L~~Le~~W~~~v~kn 186 (210)
.....+..|..+|.++....
T Consensus 78 ~i~~~~~~l~~~w~~l~~~~ 97 (110)
T d1u5pa1 78 QVKDKRETINGRFQRIKSMA 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888777654
Done!