RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14254
(210 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.035
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 20/116 (17%)
Query: 95 AAWTECVENSMSQLEHQSTRIVNLQL-----MLEYGPETWKEYLQTLVNCVSQA-QSKLI 148
+ +C L + +L + G TW + + ++ +S L
Sbjct: 308 LKYLDC---RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 149 QLR-KEIQEINWERKVMQ----IKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKK 199
L E +++ V I L L W ++ ++ L K
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIP--TIL--LSLIWFDVIK--SDVMVVVNKLHKY 414
Score = 32.5 bits (73), Expect = 0.11
Identities = 34/248 (13%), Positives = 78/248 (31%), Gaps = 74/248 (29%)
Query: 8 DALPYIDQGY-DDPGVREAALAMVEEETRRYRPTKNYLEHI---PPLD------------ 51
D L + + D+ ++ V++ + +K ++HI
Sbjct: 20 DILSVFEDAFVDNFDCKD-----VQDMPKSIL-SKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 52 -----INKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMS 106
+ KF E++R +++ + + E + P+ + + N
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTE---------QRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 107 QL-EHQSTR---IVNLQLML-EYGPETW----------KEYLQTLVNCVSQAQSKLIQLR 151
++ +R + L+ L E P K + V S +Q +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVALDV--CLSYKVQCK 179
Query: 152 KEIQEINW--------ERKVMQIKGGEQLKKL----EADWVGLVSKNYEIEQACVLLEKK 199
+ + I W V+ E L+KL + +W + I+ ++ +
Sbjct: 180 MDFK-IFWLNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 200 IQILQAEK 207
++ L K
Sbjct: 234 LRRLLKSK 241
Score = 29.8 bits (66), Expect = 0.79
Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 49/158 (31%)
Query: 12 YIDQGYDD---PGVREAAL--AMVEEETRRYRPTKNY-LEHIPPLDINKF---------- 55
I Y + E AL ++V+ Y K + + + P ++++
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 56 ------ETEIMRK---DFERIQQRL---------PMEPLSMI----RYK---LPQPPT-- 88
+ R DF ++Q++ L+ + YK P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 89 GKMSDIAAWTECVENSMSQLEHQSTRIVNLQLMLEYGP 126
++ I + +E ++ + + T ++ + LM E
Sbjct: 543 RLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.072
Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 64/194 (32%)
Query: 2 AGEVL-------VDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIP---PLD 51
+ E L +DA QG + L +E + P K+YL IP PL
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLN-------ILEWLENPSNT--PDKDYLLSIPISCPL- 240
Query: 52 INKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDI--AA-------WTECVE 102
I ++ + + L P + + TG + A W
Sbjct: 241 I--GVIQLAH--YVVTAKLLGFTPGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 103 NSMSQLE---------HQSTRIVNLQLMLEYGPETWKEYLQT---------LVNCVSQAQ 144
+ + +++ +L P ++ L+ ++ ++Q
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISNLTQE- 347
Query: 145 SKLIQLRKEIQEIN 158
Q++ + + N
Sbjct: 348 ----QVQDYVNKTN 357
Score = 28.1 bits (62), Expect = 2.7
Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 61/173 (35%)
Query: 3 GEV--LV---DALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPPLDINKFET 57
GE L D + E+ + +V YR ++ P D
Sbjct: 1765 GEYAALASLADVMSI-----------ESLVEVV-----FYR--GMTMQVAVPRDELGRSN 1806
Query: 58 EIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSDIAAWTECVENSMSQ-LEHQSTRIV 116
M + + P + + + E V +E IV
Sbjct: 1807 YGM----------IAINPGRVA-------ASFSQEALQYVVERVGKRTGWLVE-----IV 1844
Query: 117 NL-----QLMLEY---GPETWKEYLQTLVNCVSQAQSKLIQLRKEIQEINWER 161
N Q Y G L T+ N ++ + + I + + + ++ E
Sbjct: 1845 NYNVENQQ----YVAAGD---LRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.19
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 170 EQLKKLEADWVGLVSKNYEIEQACVL-LEKKIQ 201
+ LKKL+A L K Y + A L ++ ++
Sbjct: 20 QALKKLQAS---L--KLYADDSAPALAIKATME 47
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood
coagulation, mutant, W279F, oxyanion, transferase; 2.00A
{Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Length = 731
Score = 30.0 bits (67), Expect = 0.68
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 4 EVLVDALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKD 63
VL+ A Y+ Q + + A + E K+ + IP + I T+++ D
Sbjct: 586 AVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEIIIKVRGTQVVGSD 645
Query: 64 FE 65
Sbjct: 646 MT 647
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A
{Enterobacteria phage HK97} PDB: 3qpr_A
Length = 385
Score = 29.0 bits (64), Expect = 1.2
Identities = 9/66 (13%), Positives = 26/66 (39%)
Query: 145 SKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQ 204
S+L ++K I+E + + +++ L S ++++ ++ L+
Sbjct: 2 SELALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDLMKVQEELTKSGTRLFDLE 61
Query: 205 AEKAKR 210
+ A
Sbjct: 62 QKLASG 67
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 28.9 bits (64), Expect = 1.2
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 12 YIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKDFE 65
Y+ + +R AL E N P L + ++ +
Sbjct: 549 YVRCVSEHHLIRVKALLDAPGENGPIMTVANIPLSTPELLVQVPGKAVVWEPLT 602
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase,
TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9
b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Length = 687
Score = 28.4 bits (63), Expect = 2.1
Identities = 6/54 (11%), Positives = 15/54 (27%)
Query: 12 YIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEHIPPLDINKFETEIMRKDFE 65
Y D + ++ AL + ++ P + I ++
Sbjct: 551 YRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLV 604
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 28.2 bits (63), Expect = 2.6
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 133 LQTLVNCVSQAQSKLIQLRKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQA 192
+ N V Q ++ +LRKE+ + E+K ++ E K + E EQ
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE----EWADKYKH----------ETEQL 1024
Query: 193 CVLLEKKIQILQAEKAK 209
L+++ +L+ EK +
Sbjct: 1025 VSELKEQNTLLKTEKEE 1041
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine
biosynthesis, FEED-BACK inhibition, hexamer,
transferase; HET: NLG ADP; 2.95A {Pseudomonas
aeruginosa} SCOP: c.73.1.2
Length = 300
Score = 27.5 bits (62), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 4 EVLVDALPYIDQGYDDPGV-REAALAMVEEETRR 36
+VL +ALPYI + V + AM EE +
Sbjct: 12 KVLSEALPYIRRFVGKTLVIKYGGNAMESEELKA 45
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 16 GYDDPGVREAALAMVEEETRRY-RPTKNYLEHIPPLDINKFETEIMRKDFERIQQRL 71
Y P V +Y + ++ + LD K E ++ + +E + Q L
Sbjct: 151 VYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQEL 207
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.1 bits (60), Expect = 4.6
Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 20/176 (11%)
Query: 34 TRRYRPTKNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPTGKMSD 93
TR+ + E + + + E K+ E+ +L E ++++ KL Q T ++
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE-KNLLQEKL-QAETELYAE 910
Query: 94 IAAWTECVENSMSQLEHQSTRIVNLQLMLEYGPETWKEYLQTLVNCVSQAQSKLIQLRKE 153
+ +LE + E E Q L + Q +++ L ++
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEE-------ERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 154 IQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEKKIQILQAEKAK 209
++E +KL+ + V K ++E +++E + L E+
Sbjct: 964 LEEEE-----------AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 26.1 bits (58), Expect = 8.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 37 YRPTKNYLEHIPPLDINKFETEIM 60
+ + YL + I FE ++
Sbjct: 449 FAAERGYLADVELSKIGSFEAALL 472
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 9.1
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 151 RKEIQEINWERKVMQIKGGEQLKKLEADWVGLVSKNYEIEQACVLLEK-KIQILQAEKA 208
RK +QE++ KVM+ + E+ KK +W ++ EQ +EK KI A+KA
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEW----NQRQS-EQ----VEKNKINNRIADKA 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,294,244
Number of extensions: 189292
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 54
Length of query: 210
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,216,824
Effective search space: 510235704
Effective search space used: 510235704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.5 bits)