RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14254
         (210 letters)



>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A
           subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 356

 Score = 29.2 bits (64), Expect = 0.38
 Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 8   DALPYIDQGYDDPGVREAALAMVEEETRRYRPTKNYLEH 46
            A+ +I +   +P + +A +   E + + Y P + ++++
Sbjct: 316 AAVRFILEQKPNPEIDDAVVE--ELKKKAYAPMERFMQY 352


>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing
           protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
          Length = 217

 Score = 25.3 bits (55), Expect = 5.3
 Identities = 7/48 (14%), Positives = 19/48 (39%)

Query: 41  KNYLEHIPPLDINKFETEIMRKDFERIQQRLPMEPLSMIRYKLPQPPT 88
           +N +       +    +  ++  F+ +     ++ ++ I Y L  PP 
Sbjct: 167 RNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPA 214


>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
           adolescentis [TaxId: 1680]}
          Length = 434

 Score = 25.5 bits (54), Expect = 5.5
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 129 WKEYLQTLVNCVSQAQSKLIQLRKEI 154
             E  + L   V +A + L + R E+
Sbjct: 408 TAEIDENLKRPVVKALNALAKFRNEL 433


>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl
           transferase 2, TUTase 2, RET2 {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 259

 Score = 24.9 bits (54), Expect = 8.0
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 44  LEHIPPLDINKFETEIMR---KDFERIQQRLPMEPLSMIR 80
            +  P  ++    T+ +R   K +     R  +  L+  R
Sbjct: 76  DDPYPSHEVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEAR 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 804,957
Number of extensions: 37302
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 23
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)