BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14256
(1046 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|B Chain B, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|C Chain C, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3V8S|D Chain D, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex
With Indazole Derivative (Compound 18)
pdb|3TV7|A Chain A, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|B Chain B, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|C Chain C, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TV7|D Chain D, Human Rho-associated Protein Kinase 1 (rock 1) In Complex
With Rki1342
pdb|3TWJ|A Chain A, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|B Chain B, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|C Chain C, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
pdb|3TWJ|D Chain D, Rho-Associated Protein Kinase 1 (Rock 1) In Complex With
Rki1447
Length = 410
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
FA+ PW + Q+ R L M++M GG + N ++ Y+V +K + Y+
Sbjct: 125 FANSPW--VVQLFYAFQDDRYLYMVMEYMPGGDL-------VNLMSNYDVPEKWARFYTA 175
Query: 402 ------EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHG 438
+ I + GF+H D P N+L+ + S L L D G
Sbjct: 176 EVVLALDAIHSMGFIHRDVKPDNMLLDK-----SGHLKLADFG 213
>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|C Chain C, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 406
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
FA+ PW + Q+ R L M++M GG + N ++ Y+V +K + Y+
Sbjct: 130 FANSPW--VVQLFYAFQDDRYLYMVMEYMPGGDL-------VNLMSNYDVPEKWARFYTA 180
Query: 402 ------EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHG 438
+ I + GF+H D P N+L+ + S L L D G
Sbjct: 181 EVVLALDAIHSMGFIHRDVKPDNMLLDK-----SGHLKLADFG 218
>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ESM|B Chain B, Crystal Structure Of Rock 1 Bound To Fasudil
pdb|2ETK|A Chain A, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETK|B Chain B, Crystal Structure Of Rock 1 Bound To Hydroxyfasudil
pdb|2ETR|A Chain A, Crystal Structure Of Rock I Bound To Y-27632
pdb|2ETR|B Chain B, Crystal Structure Of Rock I Bound To Y-27632
pdb|3D9V|A Chain A, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3D9V|B Chain B, Crystal Structure Of Rock I Bound To H-1152p A Di-
Methylated Variant Of Fasudil
pdb|3NCZ|A Chain A, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|B Chain B, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|C Chain C, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NCZ|D Chain D, X-Ray Co-Structure Of Rho-Associated Protein Kinase
(Rock1) With A Potent 2h-Isoquinolin-1-One Inhibitor
pdb|3NDM|A Chain A, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|B Chain B, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|C Chain C, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
pdb|3NDM|D Chain D, Crystal Structure Of Rho-Associated Protein Kinase (Rock1)
With A Potent Isoquinolone Derivative
Length = 415
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
FA+ PW + Q+ R L M++M GG + N ++ Y+V +K + Y+
Sbjct: 130 FANSPW--VVQLFYAFQDDRYLYMVMEYMPGGDL-------VNLMSNYDVPEKWARFYTA 180
Query: 402 ------EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHG 438
+ I + GF+H D P N+L+ + S L L D G
Sbjct: 181 EVVLALDAIHSMGFIHRDVKPDNMLLDK-----SGHLKLADFG 218
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 68 LKYVEFFIHYHLLLSESYLTSDRIPNDYVFNDFAEDETRRHIKYALGVGSVIGGTGIL 125
+ Y ++F Y L + + SDR+ D FN +++ K L VG+ G+GIL
Sbjct: 23 VDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGT---GSGIL 77
>pdb|3TJ0|A Chain A, Crystal Structure Of Influenza B Virus Nucleoprotein
pdb|3TJ0|B Chain B, Crystal Structure Of Influenza B Virus Nucleoprotein
Length = 562
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 12/71 (16%)
Query: 383 TENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYAS 442
TE +VY + KLG+ Y++M+ +G +D N++ Q++++ E ILL +
Sbjct: 75 TEIKKSVYNMVVKLGEFYNQMMVKAGL--NDDMERNLI----QNAHAVERILL------A 122
Query: 443 LTDDFRTEYAK 453
TDD +TE+ K
Sbjct: 123 ATDDKKTEFQK 133
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 22/90 (24%)
Query: 350 WLKIPQIHPDLCTSRVLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGF 409
+L +P + DL +++ M+F E + Y+ VY++ L ++S +G
Sbjct: 123 YLVMPFMQTDL--QKIMGMEFSE----EKIQYL------VYQMLKGLKYIHS-----AGV 165
Query: 410 VHSDPHPGNILVRRAQSSNSAELILLDHGL 439
VH D PGN+ V + EL +LD GL
Sbjct: 166 VHRDLKPGNLAV-----NEDCELKILDFGL 190
>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2F2U|B Chain B, Crystal Structure Of The Rho-Kinase Kinase Domain
pdb|2H9V|A Chain A, Structural Basis For Induced-Fit Binding Of Rho-Kinase To
The Inhibitor Y27632
Length = 402
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
FA+ PW + Q+ + L M++M GG + N ++ Y+V +K K Y+
Sbjct: 131 FANSPW--VVQLFCAFQDDKYLYMVMEYMPGGDL-------VNLMSNYDVPEKWAKFYTA 181
Query: 402 ------EMIFNSGFVHSDPHPGNILVRR 423
+ I + G +H D P N+L+ +
Sbjct: 182 EVVLALDAIHSMGLIHRDVKPDNMLLDK 209
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEM--IFNSGFVHSDPHPGNILVR 422
V+AM ++E D+ N+++ EV + + L+ + I G VH D P N L
Sbjct: 96 VIAMPYLEHESFLDI----LNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYN 151
Query: 423 RAQSSNSAELILLDHGLYASLTDDFRTEYAKLWLSILNKDKVAMKEHCTK 472
R + L+D GL A T D + E K S A +E C++
Sbjct: 152 R----RLKKYALVDFGL-AQGTHDTKIELLKFVQS------EAQQERCSQ 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,936,063
Number of Sequences: 62578
Number of extensions: 1313426
Number of successful extensions: 3690
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3687
Number of HSP's gapped (non-prelim): 13
length of query: 1046
length of database: 14,973,337
effective HSP length: 109
effective length of query: 937
effective length of database: 8,152,335
effective search space: 7638737895
effective search space used: 7638737895
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)