RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14256
(1046 letters)
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 277 bits (711), Expect = 1e-82
Identities = 110/422 (26%), Positives = 202/422 (47%), Gaps = 20/422 (4%)
Query: 128 RNNYDVNSLVAVRLVRAASCVFNIAYIYKKALYQKATPDPTSEEYSNLKSKVHKEAAEQL 187
R + + L R +A + + + + +SEE L+ K + L
Sbjct: 9 RLPRIIRVRLRYLLGRLLRLTGRLALLLRLLSWLGKSKLASSEE---LREKRAERLRLAL 65
Query: 188 LELCKMNKGVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDLGKDP 247
EL +IK+GQ + L+P EY E + L + P P ++ +++E+LG+
Sbjct: 66 EEL----GPTFIKLGQILSTRPDLVPPEYAEELAKLQDRVPPFPFEEAERIIEEELGRPI 121
Query: 248 SEIFASIEPNPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVHVVAW 307
E+F+ EP P+ +AS+AQVH+A L G +A+KVQ +R+ D+K + L ++
Sbjct: 122 EELFSEFEPEPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKR 181
Query: 308 VFPEFKFL---WLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSR 364
+ P + L +VDE ++ + +EL++ EA+N + + F P + +P+++ + T R
Sbjct: 182 LPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRR 241
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRA 424
VL M++++G +I+D+ + I+ E+++ L + + + GF H+DPHPGNILVR
Sbjct: 242 VLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD 301
Query: 425 QSSNSAELILLDHGLYASLTDDFRTEYAKLWLSILNKDKVAMKEHCTKLGVGDMYGLFAC 484
++LLD G+ L FR A+L L+ LN+D + E +LG
Sbjct: 302 -----GRIVLLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGYVPPDTDRD- 355
Query: 485 MVSGRSWDAIEAGIEKTKFTESEKEVFQRDVPNLIPEISDILTRVNRQVLLILKTNDLIR 544
+ A+ I E + + + R+ +++L+ +T L+
Sbjct: 356 -PLAAAIRAVLEPIYGKPLEEISFGEILDKLFEVA-RRFPM--RLPPELVLLQRTLLLVE 411
Query: 545 GI 546
G+
Sbjct: 412 GV 413
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 185 bits (472), Expect = 7e-51
Identities = 79/274 (28%), Positives = 145/274 (52%), Gaps = 10/274 (3%)
Query: 197 VYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDLGKDPSEIFASIEP 256
+IK GQ + LLP + E + +L + P K V++ LG E+FA E
Sbjct: 63 TFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFAEFEE 122
Query: 257 NPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVHVVAWVFPEFK--- 313
P+ AAS+AQVH+A L DG +A+KV + DI + L +V + P+ +
Sbjct: 123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLR 182
Query: 314 FLWLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEG 373
+V E ++ + +EL+ EA+N +++ + F + P + +P+++ D + RVL M++++G
Sbjct: 183 PTEVVKEFEKTLRRELDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDG 242
Query: 374 GQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELI 433
++D+ + E ++ +++ L + + + GF H+D HPGNI V + ++I
Sbjct: 243 IPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKD-----GKII 297
Query: 434 LLDHGLYASLTDDFRTEYAKLWLSILNKD--KVA 465
LD G+ L+++ R A++ LN+D +VA
Sbjct: 298 ALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVA 331
>gnl|CDD|111949 pfam03109, ABC1, ABC1 family. This family includes ABC1 from yeast
and AarF from E. coli. These proteins have a nuclear or
mitochondrial subcellular location in eukaryotes. The
exact molecular functions of these proteins is not
clear, however yeast ABC1 suppresses a cytochrome b mRNA
translation defect and is essential for the electron
transfer in the bc 1 complex and E. coli AarF is
required for ubiquinone production. It has been
suggested that members of the ABC1 family are novel
chaperonins. These proteins are unrelated to the ABC
transporter proteins.
Length = 117
Score = 145 bits (369), Expect = 6e-41
Identities = 48/117 (41%), Positives = 75/117 (64%)
Query: 241 EDLGKDPSEIFASIEPNPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEA 300
E+LG E+FA + P+ AAS+AQVH+A L DG +A+KVQ V+ D+K ++
Sbjct: 1 EELGAPVEEVFAEFDEEPIAAASIAQVHRAVLKDGEEVAVKVQRPGVKKRIRSDLKLLKF 60
Query: 301 LVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIH 357
L ++ FP F WLVDE ++++P+EL+FL EA+N K + FA PW+ +P+++
Sbjct: 61 LAKILKKFFPGFDLDWLVDEFRKSLPQELDFLREAANAEKFRENFADLPWVYVPKVY 117
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 134 bits (339), Expect = 8e-33
Identities = 74/278 (26%), Positives = 141/278 (50%), Gaps = 13/278 (4%)
Query: 197 VYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDLGKDPSEIFASIEP 256
+++K GQ + L P + + + +L + P A++++ LG E F +
Sbjct: 65 IFVKFGQMLSTRRDLFPPDIADELALLQDRVPPFDGALARAIIEKALGGPVEEWFDDFDI 124
Query: 257 NPMGAASLAQVHKATLHD-GSTIALKVQHRNVRDNANIDIKCMEALVHVVAWVFPEFKFL 315
P+ +AS+AQVH A L D G + +KV ++ + D+ M L V + P+ + L
Sbjct: 125 KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRL 184
Query: 316 ---WLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFME 372
+V E ++ + EL+ + EA+N +++ + F L +P+++ D C+ V+ M+ M
Sbjct: 185 KPREVVAEFEKTLHDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMY 244
Query: 373 GGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAEL 432
G ++DV + ++ ++++ +++ +F GF H+D HPGNI V S + E
Sbjct: 245 GIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFV----SYDPPEN 300
Query: 433 ---ILLDHGLYASLTDDFRTEYAKLWLSILNKD--KVA 465
I LD G+ SL + + A+ +L+ N+D +VA
Sbjct: 301 PRYIALDFGIVGSLNKEDKRYLAENFLAFFNRDYRRVA 338
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 38.4 bits (90), Expect = 0.008
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 365 VLAMDFMEGGQINDVDYITENNINV-YEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRR 423
+ M+++EG + DV I E N + E+ +GKL+ +G VH D NI+VR
Sbjct: 73 TIVMEYIEGKPLKDV--IEEGNDELLREIGRLVGKLHK-----AGIVHGDLTTSNIIVR- 124
Query: 424 AQSSNSAELILLDHGL 439
+L L+D GL
Sbjct: 125 -----DDKLYLIDFGL 135
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 38.3 bits (90), Expect = 0.019
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRA 424
+ M+++ G + DV V +V + + KL+ +G VH D N +VR
Sbjct: 412 TIVMEYIGGKDLKDVLEGNPEL--VRKVGEIVAKLHK-----AGIVHGDLTTSNFIVRDD 464
Query: 425 QSSNSAELILLDHGLYASLTDDF 447
+ L L+D GL +D
Sbjct: 465 R------LYLIDFGL-GKYSDLI 480
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 37.8 bits (88), Expect = 0.024
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
A+ W I Q+H + L M++M GG D+ + N Y++ +K + Y+
Sbjct: 99 HANSEW--IVQLHYAFQDDKYLYMVMEYMPGG---DLVNLMSN----YDIPEKWARFYTA 149
Query: 402 ------EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHG 438
+ I + GF+H D P N+L+ S L L D G
Sbjct: 150 EVVLALDAIHSMGFIHRDVKPDNMLL-----DKSGHLKLADFG 187
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 35.8 bits (83), Expect = 0.037
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 351 LKIPQIHP--DLCTSRVLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSG 408
L +P++ + L M+++EG +++V + +I ++++ L KL+ +
Sbjct: 53 LPVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDI-AEQLAELLAKLHQ--LPLLV 109
Query: 409 FVHSDPHPGNILVRRAQSS 427
H D HPGNILV +
Sbjct: 110 LCHGDLHPGNILVDDGKIL 128
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 36.4 bits (85), Expect = 0.043
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVR 422
++ M+++EG + D+ I N + E+S ++G+L ++ ++G +H D N+++
Sbjct: 75 IIVMEYIEGEPLKDL--INSNGMEELELSREIGRLVGKL-HSAGIIHGDLTTSNMILS 129
>gnl|CDD|240172 cd05151, ChoK, Choline Kinase (ChoK). The ChoK subfamily is part of
a larger superfamily that includes the catalytic domains
of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). It is composed of
bacterial and eukaryotic choline kinases, as well as
eukaryotic ethanolamine kinase. ChoK catalyzes the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to its substrate, choline, producing phosphorylcholine
(PCho), a precursor to the biosynthesis of two major
membrane phospholipids, phosphatidylcholine (PC), and
sphingomyelin (SM). Although choline is the preferred
substrate, ChoK also shows substantial activity towards
ethanolamine and its N-methylated derivatives. Bacterial
ChoK is also referred to as licA protein. ETNK catalyzes
the transfer of the gamma-phosphoryl group from CTP to
ethanolamine (Etn), the first step in the CDP-Etn
pathway for the formation of the major phospholipid,
phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK
shows specific activity for its substrate and displays
negligible activity towards N-methylated derivatives of
Etn. ChoK plays an important role in cell signaling
pathways and the regulation of cell growth.
Length = 170
Score = 33.0 bits (76), Expect = 0.45
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILV 421
VL +F+EG ++ D+ N+ +++ L KL+S + + H+D PGN L+
Sbjct: 67 VLITEFIEGSELLTEDFSDPENLE--KIAKLLKKLHSSPLPDLVPCHNDLLPGNFLL 121
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 33.0 bits (76), Expect = 0.48
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRA 424
++ M+++EG + D + E ++ ++G+L ++ +G VH D NI++
Sbjct: 75 LIVMEYIEGELLKD--ALEEARPDLLR---EVGRLVGKL-HKAGIVHGDLTTSNIILSGG 128
Query: 425 QSSNSAELILLDHGL 439
+ + +D GL
Sbjct: 129 R------IYFIDFGL 137
>gnl|CDD|225106 COG2195, PepD, Di- and tripeptidases [Amino acid transport and
metabolism].
Length = 414
Score = 32.7 bits (75), Expect = 0.98
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 621 NTSSKENDATTPSSSDWWKGFLDAARNKVGAVLIDNTSSKENDATT 666
T SK A PS+ K +++G + + ++ +
Sbjct: 18 PTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVP 63
Score = 30.0 bits (68), Expect = 7.4
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 656 NTSSKENDATTPSSSDWWKGFLDAARNKVGAVLL 689
T SK A PS+ K +++G + L
Sbjct: 18 PTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGL 51
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 32.9 bits (74), Expect = 1.0
Identities = 53/289 (18%), Positives = 102/289 (35%), Gaps = 23/289 (7%)
Query: 634 SSDW-WKGFLDAARNKVGAVLIDNTSSKENDATTPSSSDWWKGFLD-AARNKVGAVLLVS 691
+ +W WKG+ D N V ++ E+D P + L+ A +V L
Sbjct: 219 NGEWIWKGYFDEDGNWVWTRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPE 278
Query: 692 MIERSTTLDLKSAEVLEFVKKDFDELSTTVKTEATNVVQQTTTVFRETLQLDKPESTASS 751
++ T + K+ E + + TV+T+ T+ + +TV ++++P
Sbjct: 279 PVDEETVAETKAEEEPQPTQ--------TVETKPTSAPE--STVEENLPEINQPTQAVQP 328
Query: 752 MKKSVSTFLDQVSTVLNPSPDDEDEEAVVIHGTDVVPLTRLQAQLYAL--SNEPDTYLKE 809
+++ST + + L P D+ +E + T + + L + L N D +
Sbjct: 329 TSETISTTPVEPTDQLKPKEVDQIQEE--LKKTKEIEVEELPTKKNDLVEINFDDLEELK 386
Query: 810 IDSINYVDQKYP------WALFPEDKKCSWGLFPEFTVWPLFLTKVPLFKAIRTDSIIYD 863
+ + +K P WA + + + + L + T I +
Sbjct: 387 FELVQTNQEKEPEKAVENWATDYQLDEPTQSNIDWYKQED-PKDLEQLVQDQATLEITEE 445
Query: 864 NQKSPRAGSREMYGTPAIQGENLEKAQKEEAFLSTYSNFGHQEHFSGQQ 912
NQ SP + + + +A KEE L GQ
Sbjct: 446 NQISPEPVEEQPSVESTAPEDQVVEAIKEEEELLEQKKAAEFAELFGQP 494
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 31.8 bits (73), Expect = 1.4
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 327 KELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQ----INDVDYI 382
E + L +A + V K++ F Q +L L M+++ GG + +V +
Sbjct: 42 TERDILSQAQSPY-VVKLYYSF------QGKKNLY----LVMEYLPGGDLASLLENVGSL 90
Query: 383 TENNINVY--EVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGL 439
E+ +Y E+ L E + ++G +H D P NIL+ ++ L L D GL
Sbjct: 91 DEDVARIYIAEIVLAL-----EYLHSNGIIHRDLKPDNILI-----DSNGHLKLTDFGL 139
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 31.7 bits (73), Expect = 1.7
Identities = 43/236 (18%), Positives = 82/236 (34%), Gaps = 52/236 (22%)
Query: 313 KFLWLVDETK--RNIPKELNFLEEAS--NITKVTKMFAHFPWLKIPQIHPDLCTSRVLAM 368
K + K I +E+ L++ NI ++ +F L L M
Sbjct: 30 KVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFED---------EDKLY----LVM 76
Query: 369 DFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNS-------GFVHSDPHPGNILV 421
++ EGG + D + + +S+ + Y I ++ G VH D P NIL+
Sbjct: 77 EYCEGGDLFD--LLKKRGR----LSEDEARFYLRQILSALEYLHSKGIVHRDLKPENILL 130
Query: 422 RRAQSSNSAELILLDHGLYASLTDD-FRTEYA--KLWLS--ILNKDKVAMKEHCTKLGVG 476
+ L D GL L T + +++ +L
Sbjct: 131 -----DEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKA--------V 177
Query: 477 DMYGL---FACMVSGRS-WDAIEAGIEKTKFTESEKEVFQRDVPNLIPEISDILTR 528
D++ L +++G+ + + +E K K F ++ PE D++ +
Sbjct: 178 DIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRK 233
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 31.9 bits (72), Expect = 1.9
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 23/111 (20%)
Query: 345 FAHFPWLKIPQIHPDLCTSRVL--AMDFMEGGQINDVDYITENNINVYEVSDKLGKLYS- 401
FA+ PW + Q+ R L M++M GG + N ++ Y+V +K + Y+
Sbjct: 99 FANSPW--VVQLFYAFQDDRYLYMVMEYMPGGDL-------VNLMSNYDVPEKWARFYTA 149
Query: 402 ------EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTDD 446
+ I + GF+H D P N+L+ + S L L D G + +
Sbjct: 150 EVVLALDAIHSMGFIHRDVKPDNMLLDK-----SGHLKLADFGTCMKMNKE 195
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 31.6 bits (71), Expect = 2.3
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 23/141 (16%)
Query: 317 LVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQI 376
L E +I E + L EA ++ V KMF F Q +L L M+F+ GG +
Sbjct: 40 LEKEQVGHIRAERDILVEADSLW-VVKMFYSF------QDKLNL----YLIMEFLPGGDM 88
Query: 377 NDV----DYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAEL 432
+ D +TE Y L + I GF+H D P N+L+ + +
Sbjct: 89 MTLLMKKDTLTEEETQFYIAETVLA---IDSIHQLGFIHRDIKPDNLLL-----DSKGHV 140
Query: 433 ILLDHGLYASLTDDFRTEYAK 453
L D GL L RTE+ +
Sbjct: 141 KLSDFGLCTGLKKAHRTEFYR 161
>gnl|CDD|222576 pfam14165, YtzH, YtzH-like protein. The YtzH-like protein family
includes the B. subtilis YtzH protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria. Proteins in this family are
approximately 90 amino acids in length. There is a
conserved DIL sequence motif.
Length = 87
Score = 29.2 bits (66), Expect = 2.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 965 EKLIKMLVNNPQLQDNFQNLVPNQDSRAQLGNNEIHTENGIAENVNY 1011
E+L+K L+ NP L + + + S +Q G +N I+ +
Sbjct: 32 ERLVKSLMANPNLDADIKQTLEEIYSYSQNGKYSSSLDNHISFHQEN 78
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 31.2 bits (70), Expect = 2.9
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 366 LAMDFMEGGQINDV----DYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILV 421
L M+F+ GG + + D ++E Y +++ + L + I GF+H D P N+L+
Sbjct: 78 LIMEFLPGGDMMTLLMKKDTLSEEATQFY-IAETV--LAIDAIHQLGFIHRDIKPDNLLL 134
Query: 422 RRAQSSNSAELILLDHGLYASLTDDFRTEYAK 453
+ L D GL L RTE+ +
Sbjct: 135 -----DAKGHVKLSDFGLCTGLKKAHRTEFYR 161
>gnl|CDD|226717 COG4267, COG4267, Predicted membrane protein [Function unknown].
Length = 467
Score = 31.2 bits (71), Expect = 3.2
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 131 YDVNSLVAVRLVRAASCVFNIA-----YIYKKALYQKATPDPTSEEYSNLKSKVHKEAAE 185
YDV A + + VF I+ K YQ T E N K+ +
Sbjct: 269 YDVPIFYAYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQ 328
Query: 186 QLLELCKMN 194
+LE+ ++
Sbjct: 329 GILEIMELQ 337
>gnl|CDD|223690 COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase
[Translation, ribosomal structure and biogenesis].
Length = 412
Score = 30.8 bits (70), Expect = 3.5
Identities = 62/352 (17%), Positives = 112/352 (31%), Gaps = 77/352 (21%)
Query: 49 KKIVPNPKPWFARIGLVLTLKYVEFFIHYHLLLS----ESYLTSDRIPNDYVFNDFAEDE 104
KK+ N +P + G V F + ++ E Y + R ED
Sbjct: 56 KKLFRNTRPVGRKFGTVTVP-----FNGEIIEVTTFRKEGYGYNGRPLPVVFPGTLEEDL 110
Query: 105 TRRH-----IKYALGVGSVI---GG-----TGILLH----RNNY--DVNSLVAVRLVRA- 144
RR + Y G +I GG +L H + D +R++RA
Sbjct: 111 KRRDFTINALAYDPEDGEIIDPFGGLKDLENRVLRHIGDASERFRED-----PLRILRAA 165
Query: 145 ---ASCVFNIAYIYKKALYQKATPDPTSEEY-SNLKSKVHKEAAEQLL-ELCKM----NK 195
A F I +P +EE + + K + E+L EL K+ N
Sbjct: 166 RFAARLGFTI--------------EPETEEAIRLMAPLLAKISRERLWDELKKLLLSPNP 211
Query: 196 GVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDILAVLKEDLGKDPSEIFASIE 255
+++ + GAL+ L P ++ + + ++L + A++
Sbjct: 212 REALQLLREYGALKILFP--ELDKLFGVPKLLLALREIELL----LHNTDELLLALAALL 265
Query: 256 PNPMGAASLAQVHKATLHDGSTIALKVQHRN------VRDNANIDIKCMEALVHVVAWVF 309
P + AA+ + L G TIA K + N + + + +
Sbjct: 266 PAFLLAAATLPLL---LRKGKTIAKKRRELKHDEAAAKAVNDLLKRLLRPNYLGYLKRLV 322
Query: 310 PEFKFLW-----LVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQI 356
E + +W L+ T + K L L + + +
Sbjct: 323 EEVREIWHEAGELLPRTGKRARKLLRLLAFRAALELLILGRDLGEAAGYKPG 374
>gnl|CDD|183235 PRK11618, PRK11618, inner membrane ABC transporter permease protein
YjfF; Provisional.
Length = 317
Score = 30.7 bits (70), Expect = 3.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 113 LGVGSVIGGTGILLHR--NNYDVNSLVAVRLVRAASCVF 149
L VGSVI TG+ L + +Y + L+A LV F
Sbjct: 63 LSVGSVIAFTGVFLAKLIGDYGWSPLLAFPLVLVMGAAF 101
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 30.7 bits (70), Expect = 4.4
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 366 LAMDFMEGGQINDVDYITENNINVYEVSDKLGKLY-SEMIF------NSGFVHSDPHPGN 418
L M++M GG D + I ++ + Y +E++ GF+H D P N
Sbjct: 78 LVMEYMPGG-----DLMNLL-IRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDN 131
Query: 419 ILVRRAQSSNSAELILLDHGLYASLTDDFRTEYAKLWLSILNKDKVAMKEH 469
IL+ + L D GL + EY L +
Sbjct: 132 ILIDA-----DGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRR 177
>gnl|CDD|152551 pfam12116, SpoIIID, Stage III sporulation protein D. This stage
III sporulation protein is a small DNA-binding family
that is essential for gene expression of the mother-cell
compartment during sporulation. The domain is found in
bacteria and viruses, and is about 40 amino acids in
length. It has a conserved RGG sequence motif.
Length = 82
Score = 28.1 bits (63), Expect = 5.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 148 VFNIA-YIYKKALYQKATPDPTSEEYSNLKSKVHKEAAEQLLELCKMNKGVYIKV 201
V IA YI + KAT ++ + KS VHK+ E+L ++ N + +V
Sbjct: 8 VLEIANYIIEN----KATVRQAAKVFGVSKSTVHKDVTERLPKI---NPQLAKEV 55
>gnl|CDD|217706 pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein PdxJ.
Members of this family belong to the PdxJ family that
catalyzes the condensation of
1-deoxy-d-xylulose-5-phosphate (DXP) and
1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form
pyridoxine 5'-phosphate (PNP). This reaction is involved
in de novo synthesis of pyridoxine (vitamin B6) and
pyridoxal phosphate.
Length = 238
Score = 30.0 bits (68), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 255 EPNPMGAASLAQVHKATLHDGSTIALKVQHRNVRD 289
P+P+ AA +A+ A DG T+ L+ R+++D
Sbjct: 20 YPDPVEAALIAERAGA---DGITVHLREDRRHIQD 51
>gnl|CDD|225195 COG2313, IndA, Uncharacterized enzyme involved in pigment
biosynthesis [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 310
Score = 30.5 bits (69), Expect = 5.1
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 736 FRETLQLDKPESTASSMKKSVSTFLDQVSTVLNPSPD----DEDE------------EAV 779
FR L+L+ PE A + L+ V NP P+ E+E EA+
Sbjct: 202 FRVPLRLESPEEIARILATKWQLGLEGGLLVANPVPEEFEIPEEEIEALIERALAEAEAL 261
Query: 780 VIHGTDVVP 788
I G +V P
Sbjct: 262 GITGKEVTP 270
>gnl|CDD|219099 pfam06595, BDV_P24, Borna disease virus P24 protein. This family
consists of several Borna disease virus (BDV) P24
proteins. The function of this family is unknown.
Length = 201
Score = 29.6 bits (66), Expect = 6.0
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Query: 958 GNKQLSNEKLIKMLVNNPQLQDNFQNLVPNQDSRAQLGNNEIHTENGI------------ 1005
G +QLSN++LIK LV +L +N +++ ++ R LG+ E G
Sbjct: 65 GREQLSNDELIKKLVT--ELAEN--SMIEAEEVRGTLGDISARIEAGFESLSALQVETIQ 120
Query: 1006 -AENVNYDSIYRTAGHSLEIMKSTQK--MEKSQTLNKKVWKLYS 1046
A+ ++ R G +++I+ + K ME + + +KV LY+
Sbjct: 121 TAQRCDHSDSIRILGENIKILDRSMKTMMETMKLMMEKVDLLYA 164
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.0 bits (68), Expect = 7.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 947 YEAWLELLEEQGNKQLSNEKL 967
YE +L+LL G +QL N +L
Sbjct: 355 YEMYLQLLGRAGERQLKNPRL 375
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 29.8 bits (67), Expect = 7.4
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 25/125 (20%)
Query: 331 FLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSR--VLAMDFMEGGQINDV-----DYIT 383
F EE +I + ++ PW IPQ+ L M++ GG + + D
Sbjct: 47 FFEEERDILSI----SNSPW--IPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFD 100
Query: 384 ENNINVY--EVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYA 441
E+ Y E+ + ++ +M G+VH D P N+L+ R + + L D G A
Sbjct: 101 EDMAQFYLAELVLAIHSVH-QM----GYVHRDIKPENVLIDR-----TGHIKLADFGSAA 150
Query: 442 SLTDD 446
LT +
Sbjct: 151 RLTAN 155
>gnl|CDD|146914 pfam04510, DUF577, Family of unknown function (DUF577). Family of
Arabidopsis thaliana proteins. Many of these members
contain a repeated region.
Length = 174
Score = 29.2 bits (66), Expect = 7.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 705 EVLEFVKKDFDELSTTVKTEATNVVQQTTTVFRE-TLQLDKPESTASSMKKSVSTFLDQV 763
V+ K +DELS + + A N + VF + + L + + + L ++
Sbjct: 35 NVVILQKGKWDELSDYILSLAKNEPVKAFHVFIDLPMPLYE-----EFIIPFLDNLLPEI 89
Query: 764 STVLNPSPDDEDEE 777
S VL P P++ D E
Sbjct: 90 SKVLLP-PEEVDVE 102
>gnl|CDD|221888 pfam13001, Ecm29, Proteasome stabiliser. The proteasome consists
of two subunits, and the capacity of the proteasome to
degrade protein depends crucially on the interaction
between these two subunits. This interaction is affected
by a wide range of factors including metabolites, such
as ATP, and proteasome-associated proteins such as
Ecm29. Ecm29 stabilises the interaction between the two
subunits.
Length = 497
Score = 29.9 bits (68), Expect = 8.4
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 218 ETMKVLHSKAPMSPMKDILAVLK--EDLGKDPSEIFASIE 255
E + +L + P KDI V + L ++ ++ SI+
Sbjct: 393 EALGLLAKRDPSLFNKDIDLVEFLFDSLSEESPDVRVSIQ 432
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 29.5 bits (66), Expect = 8.4
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 366 LAMDFM--EGGQINDVDYITENNIN--VYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILV 421
L M FM + G++ + ++E+ I VY++ L + I +G +H D PGN+ V
Sbjct: 97 LVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGL-----KYIHAAGIIHRDLKPGNLAV 151
Query: 422 RRAQSSNSAELILLDHGLYASLTDDFRTEY 451
+ EL +LD GL A TD T Y
Sbjct: 152 -----NEDCELKILDFGL-ARQTDSEMTGY 175
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 29.6 bits (66), Expect = 9.7
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 404 IFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTDDFRTEY-AKLW 455
I ++G +H D P N+ V + EL +LD GL A DD T Y A W
Sbjct: 134 IHSAGIIHRDLKPSNVAV-----NEDCELRILDFGL-ARQADDEMTGYVATRW 180
>gnl|CDD|197563 smart00187, INB, Integrin beta subunits (N-terminal portion of
extracellular region). Portion of beta integrins that
lies N-terminal to their EGF-like repeats. Integrins are
cell adhesion molecules that mediate cell-extracellular
matrix and cell-cell interactions. They contain both
alpha and beta subunits. Beta integrins are proposed to
have a von Willebrand factor type-A "insert" or "I"
-like domain (although this remains to be confirmed).
Length = 423
Score = 29.6 bits (67), Expect = 10.0
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 689 LVSMIERST--TLDLKSAEVLEFVKKDFDELSTTVKTEATNVVQQTTTVFR 737
L ++I S+ L S+ V+E +K ++++S+ V+ E + + + +
Sbjct: 308 LSALIPGSSVGELSEDSSNVVELIKDAYNKISSRVELEDNALPEGVSVTYT 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0818 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,588,925
Number of extensions: 5190308
Number of successful extensions: 4519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4509
Number of HSP's successfully gapped: 52
Length of query: 1046
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 939
Effective length of database: 6,191,724
Effective search space: 5814028836
Effective search space used: 5814028836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)