RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14256
(1046 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 2e-14
Identities = 89/737 (12%), Positives = 218/737 (29%), Gaps = 218/737 (29%)
Query: 76 HYHLLLSES----YLTSDRIPNDYVF-NDFAEDETRRHIKYALGVGSVIGGTGILLHRNN 130
H+H + E+ Y D + VF + F ++ + ++ IL +
Sbjct: 3 HHHHMDFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMP--------KSIL---SK 48
Query: 131 YDVNSLVAVR-LVRAASCVFNIAYIYKKALYQKATPDPTSEEYSNLKSKVHKEAAEQLLE 189
+++ ++ + V +F ++ + QK + Y L S + E
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE------- 101
Query: 190 LCKMNKGVYIKVGQHIGALEYLLPKEYVETMKVLHSKAPMSPMKDI-----LAVLKEDLG 244
+ + + Y+E L++ + ++ L++ L
Sbjct: 102 -QRQPSMMT---------------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 245 KDPSEIFASIEPNPMG-------AASLAQVHKATLHDGSTIA-LKVQHRNVRDNANIDIK 296
+ I+ + A + +K I L +++ N +++
Sbjct: 146 ELRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEM- 201
Query: 297 CMEALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQI 356
++ L++ + + + D + NI ++ ++ ++ ++ +
Sbjct: 202 -LQKLLYQI-----DPNWTSRSDHSS-NIKLRIHSIQA-----ELRRLLKS-------KP 242
Query: 357 HP-------DLCTSRVL-AMDF--------MEGGQINDVDYITENNINVYEVSDKLGKLY 400
+ ++ ++ A + + + T +I++ S L
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 401 SEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTDDF--RTEYAKLWLSI 458
+ + ++ P L R ++N + A D + W +
Sbjct: 303 VKSLL-LKYLDCRPQD---LPREVLTTN-----PRRLSIIAESIRDGLATWDN---WKHV 350
Query: 459 LNKDKVAMKEHCTKLGVGDMYGLFACMVSGRSWDAIEAGIEKTKFTESEK-----EVFQR 513
N DK+ IE+ + + E K VF
Sbjct: 351 -NCDKLTT--------------------------IIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 514 DVPNLIPEISDILTRVNRQVLLILKTNDLIRGIEHTLKTHARRVSLLV----MSRCCIRS 569
IP +L ++ + + + + + SL+ S I S
Sbjct: 384 SAH--IPT----------ILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPS 430
Query: 570 VYSEEYSHAHS----HLKKCV--LLISEKWQLFKLS-----MY-YFYLGISRPMLEGFHF 617
+Y E + H + V I + + L Y Y ++ G H
Sbjct: 431 IYLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--------GHHL 481
Query: 618 WIDNTSSKENDATTPSSSDWWKGFLDAA--RNKVGAVLIDNTSSKENDATTPSSSD--WW 673
N E FLD K+ D+T+ + + + ++
Sbjct: 482 --KNIEHPERMTLFR------MVFLDFRFLEQKIRH---DSTAWNASGSILNTLQQLKFY 530
Query: 674 KGFLDAARNKVGAVLLVSMIERSTTLDLKSAEVLEFVKKDFDELSTTVKTEATNVVQ--- 730
K + + + + +L+F+ K + L + ++ T++++
Sbjct: 531 KPY---------------ICDNDPKYERLVNAILDFLPKIEENL---ICSKYTDLLRIAL 572
Query: 731 --QTTTVFRETL-QLDK 744
+ +F E Q+ +
Sbjct: 573 MAEDEAIFEEAHKQVQR 589
Score = 76.8 bits (188), Expect = 3e-14
Identities = 95/695 (13%), Positives = 206/695 (29%), Gaps = 213/695 (30%)
Query: 368 MDFMEGGQI----NDVDYITENNI----NVYEVSDKLGKLYS----EMIFNSGFVHSDPH 415
MDF E G+ D+ + E+ + +V D + S + I S
Sbjct: 7 MDF-ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS------KD 59
Query: 416 PGNILVR-----RAQSSNSAELILLDHGL---YASLTDDFRTEY--------------AK 453
+ +R ++ + ++ L Y L +TE +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 454 LW--LSILNKDKVAMKEHCTKL-----------GVGDMYGLFACMVSGRSWDAIEAGIEK 500
L+ + K V+ + KL V + G+ G++W A++ +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGS---GKTWVALDVCLSY 174
Query: 501 TKFTESEKEVF-----QRDVPNLIPEI---------SDILTRVNRQVLLILKTNDLIRGI 546
+ + ++F + P + E+ + +R + + L+ + + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 547 EHTLKTHARRVSLLVMSRCCIRSVYSEEYSHAHSHLK----KC-VLLISEKWQLF----- 596
LK+ LLV+ +V + + C +LL + Q+
Sbjct: 235 RRLLKSKPYENCLLVL-----LNVQNAK------AWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 597 ----KLSMYYFYLGISRP-MLEGFHFWIDNTSSK---ENDATTPSSSDWWKGFLDAARNK 648
+S+ + + ++ + ++D E T P +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----------RRLSI 332
Query: 649 VGAVLIDNTSSKENDATTPSSSDWWKGFLDAARNKVGAVLLVSMIERSTTLD-LKSAEVL 707
+ + D ++ W + +K L ++IE S L+ L+ AE
Sbjct: 333 IAESIRDGLAT-------------WDNWKHVNCDK-----LTTIIESS--LNVLEPAE-- 370
Query: 708 EFVKKDFDELSTTVKTEATNVVQQTTTVFRETLQLDKPESTASSM-KKSVSTFLDQVSTV 766
+K FD LS V + ++ ++ + + + K S+ +++
Sbjct: 371 --YRKMFDRLS--VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEK---- 419
Query: 767 LNPSPDDEDEEAVVIHGTDVVPLTRLQAQLYALSNEPDTYLKEIDSINYVDQKYPWALFP 826
E + I + L+ + L NE + +D N
Sbjct: 420 ------QPKESTISIPSIYL----ELKVK---LENEYALHRSIVDHYN-----------I 455
Query: 827 EDKKCSWGLFPEFTVWPLFLTKVPLFKAIRTDSIIYDNQKSPRAGSREMYGTPAIQGENL 886
S L P D Y S + +N+
Sbjct: 456 PKTFDSDDLIPP-----------------YLDQYFY---------SHIGH-----HLKNI 484
Query: 887 EKAQKEEAFLSTYSNFGHQEHFSGQQIFYSLQNFNICSVVFPPCHAAFGKKNRCTPFELS 946
E ++ F + +F F Q+I + +N + K +
Sbjct: 485 EHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 947 YEAWLELLEE---QGNKQLSNEK---LIKMLVNNP 975
YE + + + + + L K L+++ +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Score = 44.8 bits (105), Expect = 2e-04
Identities = 46/360 (12%), Positives = 104/360 (28%), Gaps = 125/360 (34%)
Query: 689 LVSMIERSTTLDLKSAEVLEFVK-----KDFDELSTTVKTEATNVVQQTTTVFRETLQLD 743
++S+ E + + +V + K ++ D + + + V T +F L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-----IMSKDAVSGTLRLF--WTLLS 73
Query: 744 KPESTASSMKKSVSTFLDQVSTVLNPSPDDEDEEAVVIHGTDVVPLTRLQAQLYALSNEP 803
K E V F+++V + + ++ + ++ + S
Sbjct: 74 KQEEM-------VQKFVEEV--------LRINYKFLM---------SPIKTEQRQPSMMT 109
Query: 804 DTYLKEIDSINYVDQKYPWALFPEDKKCSWGLFPEFTVWPLFLTKVPLFKAIRTDSIIYD 863
Y+++ D + +Q + ++++ + +R + +
Sbjct: 110 RMYIEQRDRLYNDNQVFA---------------------KYNVSRLQPYLKLRQ--ALLE 146
Query: 864 NQKSPRAGSREMYGTPAIQGENLEKAQKEEAFLSTYSNFGHQEHFSGQQIFYSLQNFNIC 923
+ + + G+ G K L ++ Q + IF
Sbjct: 147 LRPAKNVLIDGVLGS----G-------KTWVALDVCLSYKVQCKMDFK-IF--------- 185
Query: 924 SVVFPPCHAAFGKKNRCTPFELSYEAWLELLEEQGNKQLSNEKLIKMLVNNPQLQDNFQN 983
WL L N S E +++ML Q
Sbjct: 186 --------------------------WLNL----KNCN-SPETVLEML------QKLLYQ 208
Query: 984 LVPNQDSRAQLGNNEIHTENGIAENVNYDSIYRTAGHSLEIMKSTQKMEKSQTLNKKVWK 1043
+ PN SR+ +N + I + + + L ++ + Q N K W
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--------NAKAWN 260
Score = 39.5 bits (91), Expect = 0.008
Identities = 45/229 (19%), Positives = 60/229 (26%), Gaps = 64/229 (27%)
Query: 9 QYSLLFSTF---SRVPNPSFSLRFWDDKTIAVTVPSVKPLEKKKKIVPNPKPWFARI-GL 64
+ S F + +P SL W D + + V L K + PK I +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 65 VLTLK-----------------------------------YVEFFIHYHLLLSESYLTSD 89
L LK Y I +HL E
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 90 RIPNDYVFNDFAEDETR-RHIKYALGVGSVIGGTGILLHRNNYD----VNSLVAVRLVRA 144
VF DF E + RH A I T L Y N RLV A
Sbjct: 492 LFRM--VFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNA 547
Query: 145 -----ASCVFNIAYIYKKA-LYQKATPDPTSEEYSNLKSKVHKEAAEQL 187
N+ K L + A + +EA +Q+
Sbjct: 548 ILDFLPKIEENL-ICSKYTDLLRIALMAEDEAIF--------EEAHKQV 587
Score = 29.8 bits (66), Expect = 6.8
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 26/97 (26%)
Query: 4 LSSVGQYSLLFSTFSRVPNPSFSLRFWDDKTIAVTVPSVKPLEKKKKIVPNPKPWFARIG 63
L ++ + F V RF LE+K I + W A
Sbjct: 481 LKNIEHPER-MTLFRMV---FLDFRF---------------LEQK--IRHDSTAWNASGS 519
Query: 64 LVLTLKYVEFFIHYHLLLSESYLTSDRIPNDYVFNDF 100
++ TL+ ++F+ Y + ++ +R+ N + DF
Sbjct: 520 ILNTLQQLKFYKPY---ICDNDPKYERLVNAIL--DF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-08
Identities = 102/584 (17%), Positives = 180/584 (30%), Gaps = 191/584 (32%)
Query: 320 ETKRNIPKELNF----LEE--ASNITKVTKMFAHFPWLKIPQIHPDLCTSRV-LAMDFME 372
E +P F L+E + + T+ FA D T+ L F+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA----------DDEPTTPAELVGKFL- 65
Query: 373 GGQINDVDYITENNINVYEVSDKLGKLYSEMI------FNSGFVHSDPHPGNILVRRAQS 426
Y++ V + +++ F + ++ + +I
Sbjct: 66 -------GYVSS------LVEPSKVGQFDQVLNLCLTEFENCYLEGN----DI------- 101
Query: 427 SNSAELILLDHGLYASLTDDFRTEYAKLWLSILN-------KDKVAMKEHCTKL------ 473
H L A L + T K I N + K+ + L
Sbjct: 102 ----------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 474 GVGDMYGLFACMVSGRSWDAIEAGIEKTKFTESEK--EVFQRDVPNLIPEISDILTRVNR 531
G + +F G+ G F E + + V +LI ++ L+ + R
Sbjct: 152 GNAQLVAIFG----GQ-------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 532 QVL----LILKTNDLIRGIEHTLKTHARRVSLLVMSRCCIRSVYSEEY--SHAHSHLKKC 585
L + + +++ +E+ T ++Y S S C
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTP------------------DKDYLLSIPIS----C 238
Query: 586 VLLISEKWQLFKLSMYYFY---LGIS----RPMLEGFHFWIDNTSSKEND---ATTPSSS 635
L+ + +L+ Y LG + R L+G + A + +
Sbjct: 239 PLI-----GVIQLAHYVVTAKLLGFTPGELRSYLKG-------ATGHSQGLVTAVAIAET 286
Query: 636 DWWKGFLDAARNKVGAVLIDNTSSKENDATTPSSSDWWKGFLDAARNKVGA---VLLVSM 692
D W+ F + R + + E P++S D+ N G +L +S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSLPPSILEDSLENNEGVPSPMLSIS- 342
Query: 693 IERSTTLDLKSAEVLEFVKKDFDELSTTVKTE------ATNVV----QQTTTVFRETLQ- 741
+L +V ++V K L + E A N+V Q+ TL+
Sbjct: 343 -------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 742 ------LDKPESTASSMKKSVST-FLDQV-----STVLNPSPD----DEDEEAVVIHGTD 785
LD+ S K S FL V S +L P+ D D + V + D
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFL-PVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 786 VVPLTRLQAQLYALSNEPDTYLKEID-SI--NYVDQ--KYP--W 822
+Q +Y + D L+ + SI VD + P W
Sbjct: 455 ------IQIPVYDTFDGSD--LRVLSGSISERIVDCIIRLPVKW 490
Score = 45.8 bits (108), Expect = 8e-05
Identities = 58/327 (17%), Positives = 96/327 (29%), Gaps = 123/327 (37%)
Query: 131 YDVNSLVAVRLV--RAASCV-----FNIAYIYKKALYQKATPDPTS-------------- 169
Y S A + V RA + F+I I +P +
Sbjct: 1636 YK-TSKAA-QDVWNRADNHFKDTYGFSILDIVIN--------NPVNLTIHFGGEKGKRIR 1685
Query: 170 EEYSNLKSKVHKEAAEQLLELCKMNKGVYIKVGQHIGALEYLLPKEYV-ET------MKV 222
E YS + + + + ++ K ++ +H + + K + T +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFK-------EINEHSTSYTFRSEKGLLSATQFTQPAL-T 1737
Query: 223 LHSKAPMSPMKDILAVLKEDLGKDPSEIFA--SIEPNPMG---A-ASLAQVHKATLHDGS 276
L KA LK FA S+ G A ASLA V + S
Sbjct: 1738 LMEKA-------AFEDLKSKGLIPADATFAGHSL-----GEYAALASLADV----MSIES 1781
Query: 277 TIALKVQHR-------NVRDNANIDIKCMEALV-HVVAWVFPEFKFLWLVDETKRNIPKE 328
+ + V +R RD M A+ VA F + ++V+ + K
Sbjct: 1782 LVEV-VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER----VGKR 1836
Query: 329 LNFLEEASNITKVTKMFAHFPWLKIP--QIHPDLCTSRVLAMDFMEGGQINDVDYITE-- 384
+L E N + Q V A G + +D +T
Sbjct: 1837 TGWLVEIVN-------------YNVENQQY--------VAA------GDLRALDTVTNVL 1869
Query: 385 -----NNINVYEVSDKL------GKLY 400
I++ E+ L G L+
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 43.5 bits (102), Expect = 4e-04
Identities = 53/364 (14%), Positives = 102/364 (28%), Gaps = 142/364 (39%)
Query: 25 FSLRFWDDKTIAVTVPSVKPLEKKKKIVPNPKPWFAR-------IGLVLTLKYVEFFIHY 77
++ W + PS P K + IG++ HY
Sbjct: 213 LNILEW------LENPSNTP----------DKDYLLSIPISCPLIGVIQ-------LAHY 249
Query: 78 HLLLSESYLTSDRIPNDYVFNDFAEDETRRHIKYALGVGSVI--------GGTGILLHRN 129
+ T P E R ++K A G + +
Sbjct: 250 VVTAKLLGFT----P----------GELRSYLKGATGHSQGLVTAVAIAETDSW-----E 290
Query: 130 NYDVNSLVAVRLVRAASCVFNIAYIYKKALYQKATPDPTSEEYSNLKSKVHKEAA----- 184
++ V+ A+ ++ F I + +A P+ + S + E
Sbjct: 291 SFFVSVRKAITVL------FFIGV---RC--YEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 185 -------EQLLELC-KMNKGVYIKVGQHI--------------G---ALEYL---LPKEY 216
EQ+ + K N ++ G+ + G +L L L K
Sbjct: 340 SISNLTQEQVQDYVNKTNS--HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 217 VETM----KVLHSK-------------APM-SP-MKDILAVLKEDLGKDPSEIFASIEPN 257
+ ++ S+ +P S + ++ +DL K+ A
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK---- 453
Query: 258 PMGAASLA-QVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVHVVAW-VFPEFKFL 315
+ V+ T DGS + R + + + I + V W +FK
Sbjct: 454 -----DIQIPVY-DT-FDGSDL------RVLSGSISERI-VDCIIRLPVKWETTTQFKAT 499
Query: 316 WLVD 319
++D
Sbjct: 500 HILD 503
Score = 43.1 bits (101), Expect = 7e-04
Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 40/171 (23%)
Query: 865 QKSPRAG-SREMYGTPAIQGENLEKAQKEEAFLSTYSNFGHQEHFSGQQIFYSLQNFNIC 923
Q S G ++Y T + +A + F TY FS I + N
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRA--DNHFKDTYG-------FSILDIV--INNPVNL 1672
Query: 924 SVVFPPCHAAFGKKNRCTPFELSYEAWLE--LLEEQGNKQLSNEKLIKMLVNNPQ--LQD 979
++ F GK+ R + +E ++ L E+ K++ NE + + L
Sbjct: 1673 TIHFGG---EKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-NEHSTSYTFRSEKGLL-S 1727
Query: 980 NFQN------LVPNQDSRAQLGNNEIHTENGIAENVNYDSIYRTAGHSL-E 1023
Q L+ +A E G+ + D+ + AGHSL E
Sbjct: 1728 ATQFTQPALTLM----EKAAF---EDLKSKGL---IPADATF--AGHSLGE 1766
Score = 42.7 bits (100), Expect = 8e-04
Identities = 105/604 (17%), Positives = 176/604 (29%), Gaps = 240/604 (39%)
Query: 9 QYSLLFSTFSRVPNPSFSL--RFWDDKTIAVTVPSVKPLEKKKKIVPNPKPWFAR----- 61
++ LL VP SF + + + KI+P P FA
Sbjct: 17 EHVLL------VPTASFFIASQLQEQFN---------------KILPEPTEGFAADDEPT 55
Query: 62 --IGLVLT-LKYVEFFI------HYHLLLS-------ESYLTSDRIPNDYVFNDFAEDET 105
LV L YV + + +L+ YL + I + E++T
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDT 114
Query: 106 RRHIKYALGVGSVIGGTGILLHRNNYDVNSLVAV--------RLVRAASCVFNIAYIYKK 157
+ +I +N + L RA A +
Sbjct: 115 T-----LVKTKELI--------KNYITARIMAKRPFDKKSNSALFRAVGE--GNAQLV-- 157
Query: 158 ALY--QKATPDPTSE------EYSNLKSKVHKEAAEQLLELCKMN---KGVYIKVGQHIG 206
A++ Q T D E Y L + K +AE L EL + + V+ + G +I
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNIL 216
Query: 207 A-LEY---LLPKEYVETMKVLHSKAPMS-PMKDI----LA---VLKEDLGKDPSEIFASI 254
LE K+Y+ + P+S P+ I LA V + LG P E+ + +
Sbjct: 217 EWLENPSNTPDKDYLLS-------IPISCPL--IGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 255 EPNPMG----------AASLAQVH-KATLHDGSTIALKV--------QHR---------- 285
+ G A ++A+ + A+ V
Sbjct: 268 K----GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 286 ----------------NVRD-------------NAN------IDIKCMEALV-----HVV 305
++ + N++ ++I +LV VV
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----SLVNGAKNLVV 379
Query: 306 AWVFPEFKFLWLVDETKRNI--PKELN-----FLEEASNITK----VTKMFAHFPWLK-- 352
+ P+ L+ ++ T R P L+ F E + V F H L
Sbjct: 380 SG-PPQ--SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPA 435
Query: 353 IPQIHPDLCTSRVLAMDFMEGGQINDVD-----YITENNINVYEVSDKLGKLYSEMIFNS 407
I+ DL + V N D Y T + ++ +S + + + I
Sbjct: 436 SDLINKDLVKNNV---------SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 408 GFVH-------SDPH-----PGNI-----LVRRAQSSNSAELIL---LDHGLYASLTDDF 447
V H PG L R + +I+ LD DD
Sbjct: 487 P-VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN-----PDD- 539
Query: 448 RTEY 451
+Y
Sbjct: 540 --DY 541
Score = 34.3 bits (78), Expect = 0.32
Identities = 36/180 (20%), Positives = 51/180 (28%), Gaps = 79/180 (43%)
Query: 18 SRVPN----PSFSLRFWDDKTIAVTVP--SVKPLEKKKKIVPNPKPWFARIGLVLTLKYV 71
SR+P FS RF + V P S L P I L V
Sbjct: 405 SRIPFSERKLKFSNRF-----LPVASPFHS--HLL---------VPASDLINKDLVKNNV 448
Query: 72 EFFIHYHLLLSESYLTSDRIPNDYVFN--------DFAEDETRR---------------- 107
F + + +IP V++ + + R
Sbjct: 449 SF--------NAKDI---QIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 108 -----HIKYALGVGSVIGGTGILLHRNNYDVNSLVA---VRLVRAASCVFNIA--YIYKK 157
HI G G G G+L HRN VR++ A + N Y +K+
Sbjct: 495 QFKATHI-LDFGPGGA-SGLGVLTHRN-------KDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 31.9 bits (72), Expect = 1.3
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 50/164 (30%)
Query: 904 HQEHFSGQQI---FYSLQNFNICSVVFPPCHAAFGKKNR-CTPFEL-----SYEAWLELL 954
F Q+ F + P F + TP EL Y + L+
Sbjct: 24 TASFFIASQLQEQFNKIL---------PEPTEGFAADDEPTTPAELVGKFLGYVS--SLV 72
Query: 955 EEQGNKQLSNEKLIKMLVNNPQLQDNFQNLVPNQDSRAQLGNNEIHT---------ENGI 1005
E Q ++++ + + + ++ + L N+IH + +
Sbjct: 73 EPSKVGQF--DQVLNLCLT--EFENCY------------LEGNDIHALAAKLLQENDTTL 116
Query: 1006 AENVNYDSIYRTAGHSLEIMKSTQKMEKS---QTLNKKVWKLYS 1046
+ Y TA + + K S + + + +L +
Sbjct: 117 VKTKELIKNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVA 158
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 41.6 bits (98), Expect = 9e-04
Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 57/227 (25%)
Query: 229 MSPMKDILAVLKEDLG--KDPSEIFASIEPNPMGAASLAQVHKATLHDGSTIALKVQHRN 286
M+ ++ + DL +DP+ IF +E +G + QV+K R+
Sbjct: 2 MASDSPARSLDEIDLSALRDPAGIFELVEL--VGNGTYGQVYKG--------------RH 45
Query: 287 VRDNANIDIKCMEALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEASNITKVTKMFA 346
V+ IK M+ + + + I +E+N L++ S+ + +
Sbjct: 46 VKTGQLAAIKVMD-----------------VTGDEEEEIKQEINMLKKYSHHRNIATYYG 88
Query: 347 HFPWLKIPQIHPDLCTSRVLAMDFMEGGQINDV------DYITENNINV--YEVSDKLGK 398
F P + L L M+F G + D+ + + E I E+ L
Sbjct: 89 AFIKKNPPGMDDQLW----LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSH 144
Query: 399 LYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTD 445
L+ + +H D N+L+ + +AE+ L+D G+ A L
Sbjct: 145 LHQHKV-----IHRDIKGQNVLL-----TENAEVKLVDFGVSAQLDR 181
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase;
endopeptidase activity, protein kinase activity; HET:
TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A*
2vwb_A*
Length = 540
Score = 36.5 bits (85), Expect = 0.041
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 365 VLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRA 424
+ M ++ G DV I +N Y++ + +GKL+ + +H+D N +
Sbjct: 415 RIMMSYINGKLAKDV--IEDNLDIAYKIGEIVGKLH-----KNDVIHNDLTTSNFIF--- 464
Query: 425 QSSNSAELILLDHGL 439
+L ++D GL
Sbjct: 465 ----DKDLYIIDFGL 475
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 35.4 bits (82), Expect = 0.089
Identities = 45/213 (21%), Positives = 75/213 (35%), Gaps = 63/213 (29%)
Query: 241 EDLGKDPSEIFASIEPNPMGAASLAQVHKAT-LHDGSTIALKVQHRNVRDNANIDIKCME 299
++L DP E+F +E +G S +V K +A+K+ ID++ E
Sbjct: 14 QNLKADPEELFTKLEK--IGKGSFGEVFKGIDNRTQKVVAIKI----------IDLEEAE 61
Query: 300 ALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKVTKMFAHFPWLKIPQIH 357
+ +I +E+ L + +TK + L I
Sbjct: 62 --------------------DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWI---- 97
Query: 358 PDLCTSRVLAMDFMEGGQINDV---DYITENNINV--YEVSDKLGKLYSEMIFNSGFVHS 412
M+++ GG D+ + E I E+ L L+SE +H
Sbjct: 98 ---------IMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE-----KKIHR 143
Query: 413 DPHPGNILVRRAQSSNSAELILLDHGLYASLTD 445
D N+L+ S E+ L D G+ LTD
Sbjct: 144 DIKAANVLL-----SEHGEVKLADFGVAGQLTD 171
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, ADA protein, ATP-binding, cell cycle, kinase,
nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo
sapiens} PDB: 2wtk_B*
Length = 389
Score = 35.3 bits (81), Expect = 0.092
Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 63/211 (29%)
Query: 246 DPSEIFASIEPNPMGAASLAQVHKAT-LHDGSTIALKVQHRNVRDNANIDIKCMEALVHV 304
+ + G L V+ A G + ++ I+++
Sbjct: 22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRR----------INLEACS----- 66
Query: 305 VAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKVTKMFAHFPWLKIPQIHPDLCT 362
+E + EL+ + + NI F L +
Sbjct: 67 --------------NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV--------- 103
Query: 363 SRVLAMDFMEGGQINDV------DYITENNINV--YEVSDKLGKLYSEMIFNSGFVHSDP 414
FM G D+ D + E I V L ++ G+VH
Sbjct: 104 ----VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM-----GYVHRSV 154
Query: 415 HPGNILVRRAQSSNSAELILLDHGLYASLTD 445
+IL+ S ++ L S+
Sbjct: 155 KASHILI-----SVDGKVYLSGLRSNLSMIS 180
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 34.7 bits (80), Expect = 0.12
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 402 EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGL 439
E I + F+H D P N L+ + N +I D GL
Sbjct: 119 EYIHSKNFIHRDVKPDNFLMGLGKKGNLVYII--DFGL 154
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP,
manganese, transferase; HET: ADP; 1.89A {Archaeoglobus
fulgidus} PDB: 1zp9_A* 1ztf_A*
Length = 258
Score = 34.7 bits (79), Expect = 0.13
Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 44/176 (25%)
Query: 262 ASLAQVHKATLHDGSTIALKV----------QHRNVRDNANIDIKCMEALVHVVAWVFPE 311
A++ +A+K+ + + D++ + V W E
Sbjct: 61 ANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKE 120
Query: 312 FKFLWLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFM 371
F+ L E ++P+ P VL M+F+
Sbjct: 121 FRNLERAKEAGVSVPQ------------------------------PYTYMKNVLLMEFI 150
Query: 372 EGGQINDV----DYITENNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRR 423
++ ++V + + + + + + VH+D NI+
Sbjct: 151 GEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID 206
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 34.3 bits (79), Expect = 0.18
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 402 EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGL 439
E + + ++ D P N L+ R + + ++D L
Sbjct: 119 EYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFAL 156
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 33.1 bits (76), Expect = 0.41
Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 66/229 (28%)
Query: 226 KAPMSPMKDILAVLKEDLGKDPSEIFASIEPNPMGAASLAQVHKATLHDGSTIALKVQHR 285
+ P + + + ++ L K P E+F +E +G S V+KA
Sbjct: 6 QLRNPPRRQLKKLDEDSLTKQPEEVFDVLEK--LGEGSYGSVYKA--------------I 49
Query: 286 NVRDNANIDIKCMEALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKVTK 343
+ + IK + V+ + I KE++ +++ ++ K
Sbjct: 50 HKETGQIVAIKQVP------------------VESDLQEIIKEISIMQQCDSPHVVKYYG 91
Query: 344 MFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQINDV-----DYITENNINV--YEVSDKL 396
+ L I M++ G ++D+ +TE+ I L
Sbjct: 92 SYFKNTDLWI-------------VMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGL 138
Query: 397 GKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTD 445
L+ +H D GNIL+ + L D G+ LTD
Sbjct: 139 EYLHFMRK-----IHRDIKAGNILL-----NTEGHAKLADFGVAGQLTD 177
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 32.7 bits (75), Expect = 0.59
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 402 EMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGL 439
+ I V+ D P N L+ R S N+ + ++D G+
Sbjct: 120 QSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGM 157
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 32.2 bits (72), Expect = 0.97
Identities = 29/216 (13%), Positives = 65/216 (30%), Gaps = 25/216 (11%)
Query: 247 PSEIFASIEPNPMGAASLAQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVHVVA 306
P+E E +G +V + D + +A+K+ + ++ + ++
Sbjct: 18 PTEKLQRCEK--IGEGVFGEVFQTI-ADHTPVAIKIIA--IEGPDLVNGSHQKTFEEILP 72
Query: 307 WVFPEFKFLWLVDETKRNIPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLC----- 361
+ + L E + + W
Sbjct: 73 EIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKA-WDHYNSTKGSANDRPDF 131
Query: 362 ---TSRVLAMDFMEGGQINDVDYITENNINVYEVSDKLGKLYSEMIF---NSGFVHSDPH 415
+ ++F GG D++ + ++ L +L + + + F H D H
Sbjct: 132 FKDDQLFIVLEFEFGGI--DLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLH 189
Query: 416 PGNILVRRAQSS------NSAELILLDHGLYASLTD 445
GN+L+++ N + GL S+ D
Sbjct: 190 WGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIID 225
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 31.9 bits (73), Expect = 1.1
Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 65/223 (29%)
Query: 233 KDILAVLKED-LGKDPSEIFASIEPNPMGAASLAQVHKAT-LHDGSTIALKVQHRNVRDN 290
++IL L+ DP + + E +G + V+ A + G +A++
Sbjct: 3 EEILEKLRSIVSVGDPKKKYTRFEK--IGQGASGTVYTAMDVATGQEVAIRQ-------- 52
Query: 291 ANIDIKCMEALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKVTKMFAHF 348
++++ K I E+ + E NI +
Sbjct: 53 --MNLQ---------------------QQPKKELIINEILVMRENKNPNIVNYLDSYLVG 89
Query: 349 PWLKIPQIHPDLCTSRVLAMDFMEGGQINDV---DYITENNINV--YEVSDKLGKLYSEM 403
L + M+++ GG + DV + E I E L L+S
Sbjct: 90 DELWV-------------VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN- 135
Query: 404 IFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTDD 446
+H D NIL+ + L D G A +T +
Sbjct: 136 ----QVIHRDIKSDNILL-----GMDGSVKLTDFGFCAQITPE 169
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 31.9 bits (72), Expect = 1.1
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 402 EMIFNSGFVHSDPHPGNILVRRAQSSNSAELI 433
E + + F+H D P N L+ + +N +I
Sbjct: 117 EFVHSKSFLHRDIKPDNFLMGLGRRANQVYII 148
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 30.9 bits (70), Expect = 2.1
Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Query: 223 LHSKAPMSPMKDILAVLKEDLGKDPSEIFASIEPNPMGAASLAQVHKATLHDGSTIALKV 282
+ S + + ++ + ++I + + AT+ GS I+ +
Sbjct: 266 VDIPKGDSVLAESQEMIDRLMAGSLTDIVTRMSTLS-TDEAWLSKACATMLAGSPISWHL 324
Query: 283 QHRNVRDNANIDIK-CME 299
+ + + + C +
Sbjct: 325 AYIQTQLGTKLSLAQCFK 342
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 30.8 bits (70), Expect = 2.2
Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 65/230 (28%)
Query: 226 KAPMSPMKDILAVLKEDLGK-DPSEIFASIEPNPMGAASLAQVHKAT-LHDGSTIALKVQ 283
++ + + A L+ + + DP + S +G S V A H G +A+K+
Sbjct: 21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVK--IGEGSTGIVCLAREKHSGRQVAVKM- 77
Query: 284 HRNVRDNANIDIKCMEALVHVVAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKV 341
+D++ + + + E+ + + N+ ++
Sbjct: 78 ---------MDLR---------------------KQQRRELLFNEVVIMRDYQHFNVVEM 107
Query: 342 TKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQINDV---DYITENNINV--YEVSDKL 396
K + L + M+F++GG + D+ + E I V L
Sbjct: 108 YKSYLVGEELWV-------------LMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQAL 154
Query: 397 GKLYSEMIFNSGFVHSDPHPGNILVRRAQSSNSAELILLDHGLYASLTDD 446
L+++ + +H D +IL+ + + L D G A ++ D
Sbjct: 155 AYLHAQGV-----IHRDIKSDSILL-----TLDGRVKLSDFGFCAQISKD 194
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.5
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 41 SVKPLEKKKKI-VPNPKPWFA 60
++K L+ K+ + P A
Sbjct: 21 ALKKLQASLKLYADDSAPALA 41
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization,
active site conformation, hydrolysis/apoptosis complex;
2.50A {Drosophila melanogaster}
Length = 316
Score = 30.1 bits (67), Expect = 3.6
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 477 DMYGLFACMVSGRSWDAIEAGIEKTKFTESEKEVFQRDVPNLIPEISDILTRVNRQV 533
D +A + ++ G + + + +V + ++ DIL + + V
Sbjct: 232 DTLVCYANTPGYVTHRDLDTG---SWYIQKFCQVMADHAHDT--DLEDILKKTSEAV 283
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 29.7 bits (67), Expect = 4.7
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 408 GFVHSDPHPGNILVRR 423
G S HP + V
Sbjct: 149 GVALSIDHPSRVRVSI 164
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn
complex, rRNA processing, transferase; HET: ADP; 1.75A
{Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB:
1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Length = 282
Score = 29.5 bits (66), Expect = 4.9
Identities = 22/157 (14%), Positives = 44/157 (28%), Gaps = 34/157 (21%)
Query: 265 AQVHKATLHDGSTIALKVQHRNVRDNANIDIKCMEALVHVVAWVFPEFKFLWLVDETKRN 324
+ V +K + K + + F L + R
Sbjct: 104 SAVFNCYSEKFGECVVKFHKVGHTSFKKVKEK----------RDYGDLHFSVLAIRSAR- 152
Query: 325 IPKELNFLEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQINDVDYITE 384
E L + +P+ + M+ ++ ++ V
Sbjct: 153 --NEFRAL----------QKLQGLA---VPK--VYAWEGNAVLMELIDAKELYRVRVE-- 193
Query: 385 NNINVYEVSDKLGKLYSEMIFNSGFVHSDPHPGNILV 421
N EV D + + ++ ++ G VH D N+LV
Sbjct: 194 ---NPDEVLDMILEEVAKF-YHRGIVHGDLSQYNVLV 226
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 29.6 bits (67), Expect = 5.4
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 66/211 (31%)
Query: 245 KDPSEIFASIEPNPMGAASLAQVHKAT-LHDGSTIALKVQHRNVRDNANIDIKCMEALVH 303
DP+E++ + +G + +V+KA G+ A KV I+ K
Sbjct: 15 LDPNEVWEIVGE--LGDGAFGKVYKAKNKETGALAAAKV----------IETK------- 55
Query: 304 VVAWVFPEFKFLWLVDETKRNIPKELNFLEEAS--NITKVTKMFAHFPWLKIPQIHPDLC 361
+E + E+ L I K+ + H L I
Sbjct: 56 --------------SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWI-------- 93
Query: 362 TSRVLAMDFMEGGQINDV-----DYITENNINV--YEVSDKLGKLYSEMIFNSGFVHSDP 414
++F GG ++ + +TE I V ++ + L L+S+ I +H D
Sbjct: 94 -----MIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRI-----IHRDL 143
Query: 415 HPGNILVRRAQSSNSAELILLDHGLYASLTD 445
GN+L+ + ++ L D G+ A
Sbjct: 144 KAGNVLM-----TLEGDIRLADFGVSAKNLK 169
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 29.8 bits (66), Expect = 5.4
Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 12/94 (12%)
Query: 459 LNKDKVAMKEHCTKLGVGDMYGLFACMVSGRSWDAIEAGIEKTKFTESEKEVFQRDVPNL 518
++ G D G+ + + + E + P L
Sbjct: 186 QESAEIDYDSKALFSGSLDHVGMEISDIVQVAAYDFPKADPEAPLVEIGMGTIDKSKPFL 245
Query: 519 I-----PEISDILTRVNRQVLLILKTNDLIRGIE 547
++ ++ N+L +E
Sbjct: 246 CVIGHNVAGVT-------YMMDYMEDNNLTDKME 272
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB,
montreal-kingston bacterial structural genomics
initiative, BSGI, structural genomics; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A*
1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Length = 408
Score = 29.8 bits (68), Expect = 5.5
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 11/37 (29%)
Query: 676 FLDAARNKVGAVLLVSMIERSTTLDLKSAEVLEFVKK 712
+ RN + +L++ E E K
Sbjct: 62 PQLSRRNL-----------HALSLNIFKDEGREAFLK 87
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining
glycosidase; HET: MES; 2.30A {Bacteroides
thetaiotaomicron}
Length = 641
Score = 30.0 bits (67), Expect = 5.8
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 609 RPMLEGFHFWIDNTSSKENDATTPSSSDWWKGFLDAARNKVGAVLIDN--TSSKENDATT 666
+P + +W D + T ++ + A+ N + V++D + + D
Sbjct: 283 KPGKVAWDWWNDWNLDGVDFVTGVNNPTYKAYIDFASANGIEYVILDEGWAVNLQADLMQ 342
Query: 667 PSSSDWWKGFLDAARNK 683
K +D A +K
Sbjct: 343 VVKEIDLKELVDYAASK 359
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 29.3 bits (65), Expect = 6.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 406 NSGFVHSDPHPGNILVR 422
+H D H GNIL R
Sbjct: 194 TVLRLHGDCHAGNILWR 210
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside
phosphotransferase, antibiotic resistance; HET: MES PG4;
1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A*
3q2m_A*
Length = 339
Score = 29.6 bits (66), Expect = 6.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 391 EVSDKLGKLYSEMIFNSGFVHSDPHPGNILVRRA 424
+ S+KL K + HSD H GN+LV
Sbjct: 190 DTSEKLSKKIQPDLDKYVLCHSDIHAGNVLVGNE 223
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit,
mitochondrial; membrane protein, reductase, mitochondria
MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A
{Ascaris suum} PDB: 3vrb_D*
Length = 156
Score = 28.6 bits (63), Expect = 6.9
Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 15/144 (10%)
Query: 4 LSSVGQYSLLFSTFSRVPNPSFSLRFWDDKTIAVTVPSVKPLEKKKKIVPNPKP---W-F 59
LS+V + L + R P P+ +K P +
Sbjct: 2 LSAVRRAIPLSARILRTSLIQRCAGATSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKI 61
Query: 60 ARIGLVLTLKYVEFFIHYH----------LLLSESYLTSDRIPNDYVFNDFAEDETRRHI 109
R + + H L + + NDY D +
Sbjct: 62 ERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAV 121
Query: 110 KYALGVGSVIGGTGILLHRNNYDV 133
+ + + G LL+ N +DV
Sbjct: 122 RVGAYIFTACLLAG-LLYFNEHDV 144
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 29.3 bits (65), Expect = 7.4
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 470 CTKLGVGDMYGLFACMVSG-RSWDAIEAGIEKTKFTESEKEVFQRDVPNLIPEISDILTR 528
K + + F SW G + F E Q + ++ +I +
Sbjct: 216 IKKAHIEKDFIAFCSSTPDNVSWRHPTMG---SVFIGRLIEHMQEYACSC--DVEEIFRK 270
Query: 529 VNRQV 533
V
Sbjct: 271 VRFSF 275
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP
kinase insertion, autophosphorylation, transferase; HET:
BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X*
2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A*
2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A*
3l8x_A* 3mvl_A* 3mvm_A* ...
Length = 367
Score = 29.2 bits (66), Expect = 7.8
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 407 SGFVHSDPHPGNILVRRAQSSNSA-ELILLDHGLYASLTDDFRTEY 451
+ +H D P N+ V N EL +LD GL A T D T Y
Sbjct: 151 ADIIHRDLKPSNLAV------NEDCELKILDFGL-ARHTADEMTGY 189
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE;
1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 29.1 bits (66), Expect = 8.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 676 FLDAARNKVGAVLLVSMIERSTTLDLKSAEVLEFVKK 712
F NK RS LD+K+ E E +++
Sbjct: 60 FTMFNCNK-----------RSIELDMKTPEGKELLEQ 85
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 28.5 bits (64), Expect = 8.4
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 332 LEEASNITKVTKMFAHFPWLKIPQIHPDLCTSRVLAMDFMEGGQINDVDYITENNI 387
LEEA+ ++ +++A + I Q++ L +++L +DF G + +V E I
Sbjct: 89 LEEANARVEIRELYAVYSLPHISQVY-MLFRAKLLDLDFFPGIESLEVRLFGEQEI 143
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design,
radiation D tetrahedral intermediate, protease; 1.06A
{Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B*
2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B
1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B*
1i3o_B* 3edq_B ...
Length = 103
Score = 27.5 bits (61), Expect = 9.0
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 477 DMYGLFACMVSGRSWDAIEAGIEKTKFTESEKEVFQRDVPNLIPEISDILTRVNRQV 533
D ++ SW + G + F +S + ++ E ILTRVNR+V
Sbjct: 18 DFLYAYSTAPGYYSWRNSKDG---SWFIQSLCAMLKQYADK--LEFMHILTRVNRKV 69
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 27.7 bits (62), Expect = 9.3
Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 595 LFKLSMYYFYLGISRPMLEGFHFWIDNTSSKENDATTPSSSDWWK 639
+ + ++G+SR W D + S + ++
Sbjct: 50 IKARTHLIRWVGLSRQKSNEVWKWEDGS---------VISENMFE 85
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,662,363
Number of extensions: 959247
Number of successful extensions: 2217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2186
Number of HSP's successfully gapped: 61
Length of query: 1046
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 943
Effective length of database: 3,825,930
Effective search space: 3607851990
Effective search space used: 3607851990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.8 bits)