BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14257
(841 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 261 bits (667), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/501 (30%), Positives = 262/501 (52%), Gaps = 58/501 (11%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ ++ ++YW D ++ + +E N+ V G
Sbjct: 27 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL 84
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 85 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 138
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R +I+ ++ WPNGLTLDY+ ++YW DAK
Sbjct: 139 GFMYWTDW-GEVPKIERAGMDGSSRFIIINSEIY-----WPNGLTLDYEEQKLYWADAKL 192
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 193 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 250
Query: 576 QRTLTQPF-IYVNGVVKK----SPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P I+ ++ +PC ++NG CSHLCL+ + Y+C CP +KL+ + K
Sbjct: 251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 310
Query: 630 TCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE 689
TC+ ++ ++ +R ++R + L+ P + I + + + +++D IYWTD E
Sbjct: 311 TCKDGATELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDE 369
Query: 690 YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIA 749
++ RS I G Q VV A I+HP G+A+DW+A
Sbjct: 370 VRAIR--------------------------RSFIDGSGSQFVVTAQIAHPDGIAVDWVA 403
Query: 750 QNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809
+N++ + +I V L G + ++S + L + +I + P+ G M+W++
Sbjct: 404 RNLYW--TDTGTDRIEVTRLNGTMRKILISED------LEEPRAIVLDPMVGYMYWTD-W 454
Query: 810 KQVVTIEMAFMDGTKRETVVS 830
++ IE A +DG+ R +V+
Sbjct: 455 GEIPKIERAALDGSDRVVLVN 475
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 23/286 (8%)
Query: 353 SLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
++ IDY+ + +YW D + + +DGS ++ D + + W
Sbjct: 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDG-IAVD--------W 401
Query: 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
+ +NLYW ++ D+IEV +L+G R+ LI+ D+E PRAI LDP G ++WTDW + P+I
Sbjct: 402 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW-GEIPKI 460
Query: 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530
ER ++ G R V+V L WPNGL LDY +IYW DAK+D I + DG V
Sbjct: 461 ERAALDGSDRVVLVNTSL-----GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 515
Query: 531 VLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQR---TLTQPFIYVN 587
++ D + H F L ++VYWTDW+ S+ R +K + +I + + V+
Sbjct: 516 LV--EDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVH 573
Query: 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
V+ +PC NG CSHLCL G +C CP +L+SD KTC V
Sbjct: 574 RVIGSNPCAEENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIV 618
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 35/310 (11%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRT 238
G CS C S Y+C C G +L + TCK + ++ ++ + R +LR + L T
Sbjct: 280 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK----DGATELLLLARRTDLRRISLDT 335
Query: 239 ---FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295
+++ + +++ IA+D Y P ++WTD I + + G S VV
Sbjct: 336 PDFTDIVLQLEDIRHAIAID--YDPVEGYIYWTDDEVRAIRRSFIDG---SGSQFVVTAQ 390
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
++ +G+AVDW+ +NLY W+ + ++ IE ++G R L++++++ P ++V
Sbjct: 391 IAHPDGIAVDWVARNLY-----WTDTGTDR----IEVTRLNGTMRKILISEDLEEPRAIV 441
Query: 356 IDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKN 414
+D +YW D + +E +DGS+R V N + +G PN D +
Sbjct: 442 LDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN-------TSLGWPNGLALD--YDEGK 492
Query: 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474
+YW ++ D+IEV G RR L+ + P ++WTDW ++ IER
Sbjct: 493 IYWGDAKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLLGDYVYWTDWQRRS--IERVH 548
Query: 475 MSGEHRSVIV 484
R VI+
Sbjct: 549 KRSAEREVII 558
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 220 SPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYN 277
+P ++++NR +LR VD N ++ L++ A+DF ++ +++W+DV ++ I
Sbjct: 9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKR 66
Query: 278 ATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG 337
N ++ VV +GL + +GLA DW+G+ LY W+ S +N IE + + G
Sbjct: 67 TEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLY-----WTDSETNR----IEVSNLDG 115
Query: 338 ENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDS 396
R L + + P ++ +D + +YW D + +E +DGS R + N E+
Sbjct: 116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---- 171
Query: 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456
PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 172 ---WPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--D 224
Query: 457 LLFWTDWDSKA 467
+L+WTDW + +
Sbjct: 225 ILYWTDWSTHS 235
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C H C P+G C CP L D+ TC
Sbjct: 588 CSHLCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 261 bits (667), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/501 (30%), Positives = 262/501 (52%), Gaps = 58/501 (11%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ ++ ++YW D ++ + +E N+ V G
Sbjct: 19 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL 76
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 77 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 130
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R +I+ ++ WPNGLTLDY+ ++YW DAK
Sbjct: 131 GFMYWTDW-GEVPKIERAGMDGSSRFIIINSEIY-----WPNGLTLDYEEQKLYWADAKL 184
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 185 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 242
Query: 576 QRTLTQPF-IYVNGVVKK----SPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P I+ ++ +PC ++NG CSHLCL+ + Y+C CP +KL+ + K
Sbjct: 243 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 302
Query: 630 TCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQE 689
TC+ ++ ++ +R ++R + L+ P + I + + + +++D IYWTD E
Sbjct: 303 TCKDGATELLLLARRTDLRRISLDTPDFTDI-VLQLEDIRHAIAIDYDPVEGYIYWTDDE 361
Query: 690 YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIA 749
++ RS I G Q VV A I+HP G+A+DW+A
Sbjct: 362 VRAIR--------------------------RSFIDGSGSQFVVTAQIAHPDGIAVDWVA 395
Query: 750 QNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809
+N++ + +I V L G + ++S + L + +I + P+ G M+W++
Sbjct: 396 RNLYW--TDTGTDRIEVTRLNGTMRKILISED------LEEPRAIVLDPMVGYMYWTD-W 446
Query: 810 KQVVTIEMAFMDGTKRETVVS 830
++ IE A +DG+ R +V+
Sbjct: 447 GEIPKIERAALDGSDRVVLVN 467
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 157/292 (53%), Gaps = 23/292 (7%)
Query: 353 SLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
++ IDY+ + +YW D + + +DGS +++ P+ D W
Sbjct: 343 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-------AQIAHPDGIAVD--W 393
Query: 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
+ +NLYW ++ D+IEV +L+G R+ LI+ D+E PRAI LDP G ++WTDW + P+I
Sbjct: 394 VARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDW-GEIPKI 452
Query: 471 ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530
ER ++ G R V+V L WPNGL LDY +IYW DAK+D I + DG V
Sbjct: 453 ERAALDGSDRVVLVNTSL-----GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV 507
Query: 531 VLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQR---TLTQPFIYVN 587
++ D + H F L ++VYWTDW+ S+ R +K + +I + + V+
Sbjct: 508 LV--EDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVH 565
Query: 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFI 639
V+ +PC NG CSHLCL G +C CP +L+SD KTC V ++ +
Sbjct: 566 RVIGSNPCAEENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIVPEAFLL 616
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 146/310 (47%), Gaps = 35/310 (11%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRT 238
G CS C S Y+C C G +L + TCK + ++ ++ + R +LR + L T
Sbjct: 272 GGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK----DGATELLLLARRTDLRRISLDT 327
Query: 239 ---FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295
+++ + +++ IA+D Y P ++WTD I + + G S VV
Sbjct: 328 PDFTDIVLQLEDIRHAIAID--YDPVEGYIYWTDDEVRAIRRSFIDG---SGSQFVVTAQ 382
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
++ +G+AVDW+ +NLY W+ + ++ IE ++G R L++++++ P ++V
Sbjct: 383 IAHPDGIAVDWVARNLY-----WTDTGTDR----IEVTRLNGTMRKILISEDLEEPRAIV 433
Query: 356 IDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKN 414
+D +YW D + +E +DGS+R V N + +G PN D +
Sbjct: 434 LDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN-------TSLGWPNGLALD--YDEGK 484
Query: 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474
+YW ++ D+IEV G RR L+ + P ++WTDW ++ IER
Sbjct: 485 IYWGDAKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLLGDYVYWTDWQRRS--IERVH 540
Query: 475 MSGEHRSVIV 484
R VI+
Sbjct: 541 KRSAEREVII 550
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 220 SPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYN 277
+P ++++NR +LR VD N ++ L++ A+DF ++ +++W+DV ++ I
Sbjct: 1 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKR 58
Query: 278 ATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG 337
N ++ VV +GL + +GLA DW+G+ LY W+ S +N IE + + G
Sbjct: 59 TEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLY-----WTDSETNR----IEVSNLDG 107
Query: 338 ENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDS 396
R L + + P ++ +D + +YW D + +E +DGS R + N E+
Sbjct: 108 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---- 163
Query: 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456
PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 164 ---WPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--D 216
Query: 457 LLFWTDWDSKA 467
+L+WTDW + +
Sbjct: 217 ILYWTDWSTHS 227
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C H C P+G C CP L D+ TC
Sbjct: 580 CSHLCLYRPQGLRCACPIGFELISDMKTC 608
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 250/490 (51%), Gaps = 63/490 (12%)
Query: 348 IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEVLGSDSRVGIPNCRP 405
++ S+L D + +YW D L T+ ++GS E V F L+ P
Sbjct: 34 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY---------PEGMA 84
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
D W+GKNLYW ++ ++IEV+KL GQ R+ L+ D++SPRA+ALDP G ++WT+W
Sbjct: 85 VD--WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG 142
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
K P+I+R +M G R+ +V NGLT+DY R+YW D ++ I + G
Sbjct: 143 K-PKIDRAAMDGSERTTLV------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 195
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-I 584
+ V+ D L HPF + +++++YWTDW S+ RANK +G + T+IQ L I
Sbjct: 196 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 252
Query: 585 YVNGVVKKS---PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF 641
V ++S C +NG+CSHLCL G + C CP L +DN+TC A + F++F
Sbjct: 253 LVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 311
Query: 642 SRPREIRGVDLEHPYYHTIPTISIPQVFSPNN---LNFDAANKKIYWTDQEYNEVKRSSI 698
S+ I + ++ P I +P + S N +++D +K++YW D N ++++
Sbjct: 312 SQKSAINRMVIDE---QQSPDIILP-IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 367
Query: 699 VGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSS 758
G Q VV SS+ +++ P L+ID ++ +I +
Sbjct: 368 DGSQGFTVV-------------VSSVPSQNLEI-------QPYDLSIDIYSR--YIYWTC 405
Query: 759 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMA 818
+ I V L+G +L E + + +I V P KG M+++N+ ++ IE A
Sbjct: 406 EATNVINVTRLDGRSVGVVLKGEQD------RPRAIVVNPEKGYMYFTNLQERSPKIERA 459
Query: 819 FMDGTKRETV 828
+DGT+RE +
Sbjct: 460 ALDGTEREVL 469
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 34/293 (11%)
Query: 355 VIDYN--QDILYWCDSHLNTVESVRVDGSE-------RTVSFNLEVLGSDSRVGIPNCRP 405
IDY+ LYW DS N + + DGS+ S NLE+ D + I
Sbjct: 342 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI----- 396
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+ +YW + I V +L G+ ++ G+ + PRAI ++P G +++T+
Sbjct: 397 -----YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQE 451
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
++P+IER ++ G R V L S + P L LD +L +++W D+ I + G
Sbjct: 452 RSPKIERAALDGTEREV-----LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 506
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIY 585
+ +VL + + L P + +FEN +YW D + + + + T +Q + Q
Sbjct: 507 ANR-IVLEDSNIL-QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSD 563
Query: 586 VNGV-------VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
++ V ++ PC +NG CSH+CL+ +GT +C CP + L+ D +C
Sbjct: 564 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 616
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 140/273 (51%), Gaps = 39/273 (14%)
Query: 218 DSSPFVIFSNRHELRGVDLRTFN--VIALISSLKNTIALDFYYTPTANMVFWTDVIDDKI 275
D F++FS R ++R + L T N V ++ +K ALDF T N ++WTD+ I
Sbjct: 2 DPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDF--DVTDNRIYWTDISLKTI 59
Query: 276 YNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGM 335
A + G++L + VV+ GL EG+AVDW+GKNLY W+ + +N IE + +
Sbjct: 60 SRAFMNGSALEH---VVEFGLDYPEGMAVDWLGKNLY-----WADTGTNR----IEVSKL 107
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGS 394
G++R LV K++ P +L +D + +YW + ++ +DGSERT
Sbjct: 108 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL-------- 159
Query: 395 DSRVGIPNCRPEDNLWI---GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIAL 451
+PN + L I + LYW + + + IE + + G R +IA D+ P L
Sbjct: 160 -----VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNREVIADDL--PHPFGL 211
Query: 452 DPRFGLLFWTDWDSKAPRIERCS-MSGEHRSVI 483
++WTDW ++ IER + SG++R++I
Sbjct: 212 TQYQDYIYWTDWSRRS--IERANKTSGQNRTII 242
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
F++FSR +IR + LE + I + V + L+FD + +IYWTD + R+
Sbjct: 6 FLLFSRRADIRRISLETNNNNV--AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 63
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ G ++ VV EF G+ +P G+A+DW+ +N++ A +
Sbjct: 64 MNGSALEHVV----EF----------------------GLDYPEGMAVDWLGKNLYWADT 97
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V L+G+++ ++ + L ++A+ P +G M+W+ + I+
Sbjct: 98 G--TNRIEVSKLDGQHRQVLVWKD------LDSPRALALDPAEGFMYWTEWGGK-PKIDR 148
Query: 818 AFMDGTKRETVV 829
A MDG++R T+V
Sbjct: 149 AAMDGSERTTLV 160
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 42/311 (13%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGV---D 235
G CS C +V + C C A Y L D TC + + F++FS + + + +
Sbjct: 271 GHCSHLC-LAVPVGGFVCGCPAHYSLNADNRTCSAPTT-----FLLFSQKSAINRMVIDE 324
Query: 236 LRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295
++ ++I I SL+N A+D Y P ++W D + I A G+ VVV +
Sbjct: 325 QQSPDIILPIHSLRNVRAID--YDPLDKQLYWIDSRQNMIRKAQEDGS--QGFTVVVSSV 380
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
S + + ++Y + +W+ +N I + G + ++ P ++V
Sbjct: 381 PSQNLEIQPYDLSIDIYSRYIYWTCEATNV----INVTRLDGRSVGVVLKGEQDRPRAIV 436
Query: 356 IDYNQDILYWCDSHLNT--VESVRVDGSERTVSF-----NLEVLGSDSRVGIPNCRPEDN 408
++ + +Y+ + + +E +DG+ER V F L DSR+G
Sbjct: 437 VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG--------- 487
Query: 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
L+W +S+L +IE + LSG R L ++ P + + + L+W D +
Sbjct: 488 -----KLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWI--DKQQQ 538
Query: 469 RIERCSMSGEH 479
IE+ M+G
Sbjct: 539 MIEKIDMTGRE 549
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 155/490 (31%), Positives = 250/490 (51%), Gaps = 63/490 (12%)
Query: 348 IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEVLGSDSRVGIPNCRP 405
++ S+L D + +YW D L T+ ++GS E V F L+ P
Sbjct: 41 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY---------PEGMA 91
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
D W+GKNLYW ++ ++IEV+KL GQ R+ L+ D++SPRA+ALDP G ++WT+W
Sbjct: 92 VD--WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG 149
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
K P+I+R +M G R+ +V NGLT+DY R+YW D ++ I + G
Sbjct: 150 K-PKIDRAAMDGSERTTLV------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 202
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-I 584
+ V+ D L HPF + +++++YWTDW S+ RANK +G + T+IQ L I
Sbjct: 203 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 259
Query: 585 YVNGVVKKS---PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF 641
V ++S C +NG+CSHLCL G + C CP L +DN+TC A + F++F
Sbjct: 260 LVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 318
Query: 642 SRPREIRGVDLEHPYYHTIPTISIPQVFSPNN---LNFDAANKKIYWTDQEYNEVKRSSI 698
S+ I + ++ P I +P + S N +++D +K++YW D N ++++
Sbjct: 319 SQKSAINRMVIDE---QQSPDIILP-IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 374
Query: 699 VGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSS 758
G Q VV SS+ +++ P L+ID ++ +I +
Sbjct: 375 DGSQGFTVV-------------VSSVPSQNLEI-------QPYDLSIDIYSR--YIYWTC 412
Query: 759 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMA 818
+ I V L+G +L E + + +I V P KG M+++N+ ++ IE A
Sbjct: 413 EATNVINVTRLDGRSVGVVLKGEQD------RPRAIVVNPEKGYMYFTNLQERSPKIERA 466
Query: 819 FMDGTKRETV 828
+DGT+RE +
Sbjct: 467 ALDGTEREVL 476
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 139/293 (47%), Gaps = 34/293 (11%)
Query: 355 VIDYN--QDILYWCDSHLNTVESVRVDGSE-------RTVSFNLEVLGSDSRVGIPNCRP 405
IDY+ LYW DS N + + DGS+ S NLE+ D + I
Sbjct: 349 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI----- 403
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+ +YW + I V +L G+ ++ G+ + PRAI ++P G +++T+
Sbjct: 404 -----YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQE 458
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
++P+IER ++ G R V L S + P L LD +L +++W D+ I + G
Sbjct: 459 RSPKIERAALDGTEREV-----LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 513
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIY 585
+ +VL + + L P + +FEN +YW D + + + + T +Q + Q
Sbjct: 514 ANR-IVLEDSNIL-QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSD 570
Query: 586 VNGV-------VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
++ V ++ PC +NG CSH+CL+ +GT +C CP + L+ D +C
Sbjct: 571 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 623
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 39/269 (14%)
Query: 222 FVIFSNRHELRGVDLRTFN--VIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNAT 279
F++FS R ++R + L T N V ++ +K ALDF T N ++WTD+ I A
Sbjct: 13 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDF--DVTDNRIYWTDISLKTISRAF 70
Query: 280 LIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN 339
+ G++L + VV+ GL EG+AVDW+GKNLY W+ + +N IE + + G++
Sbjct: 71 MNGSALEH---VVEFGLDYPEGMAVDWLGKNLY-----WADTGTNR----IEVSKLDGQH 118
Query: 340 RSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDSRV 398
R LV K++ P +L +D + +YW + ++ +DGSERT
Sbjct: 119 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL------------ 166
Query: 399 GIPNCRPEDNLWI---GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
+PN + L I + LYW + + + IE + + G R +IA D+ P L
Sbjct: 167 -VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNREVIADDL--PHPFGLTQYQ 222
Query: 456 GLLFWTDWDSKAPRIERCS-MSGEHRSVI 483
++WTDW ++ IER + SG++R++I
Sbjct: 223 DYIYWTDWSRRS--IERANKTSGQNRTII 249
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
F++FSR +IR + LE + I + V + L+FD + +IYWTD + R+
Sbjct: 13 FLLFSRRADIRRISLETNNNNV--AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 70
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ G ++ VV EF G+ +P G+A+DW+ +N++ A +
Sbjct: 71 MNGSALEHVV----EF----------------------GLDYPEGMAVDWLGKNLYWADT 104
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V L+G+++ ++ + L ++A+ P +G M+W+ + I+
Sbjct: 105 G--TNRIEVSKLDGQHRQVLVWKD------LDSPRALALDPAEGFMYWTEWGGK-PKIDR 155
Query: 818 AFMDGTKRETVV 829
A MDG++R T+V
Sbjct: 156 AAMDGSERTTLV 167
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 42/311 (13%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGV---D 235
G CS C +V + C C A Y L D TC + + F++FS + + + +
Sbjct: 278 GHCSHLC-LAVPVGGFVCGCPAHYSLNADNRTCSAPTT-----FLLFSQKSAINRMVIDE 331
Query: 236 LRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295
++ ++I I SL+N A+D Y P ++W D + I A G+ VVV +
Sbjct: 332 QQSPDIILPIHSLRNVRAID--YDPLDKQLYWIDSRQNMIRKAQEDGS--QGFTVVVSSV 387
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
S + + ++Y + +W+ +N I + G + ++ P ++V
Sbjct: 388 PSQNLEIQPYDLSIDIYSRYIYWTCEATNV----INVTRLDGRSVGVVLKGEQDRPRAIV 443
Query: 356 IDYNQDILYWCDSHLNT--VESVRVDGSERTVSF-----NLEVLGSDSRVGIPNCRPEDN 408
++ + +Y+ + + +E +DG+ER V F L DSR+G
Sbjct: 444 VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG--------- 494
Query: 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
L+W +S+L +IE + LSG R L ++ P + + + L+W D +
Sbjct: 495 -----KLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWI--DKQQQ 545
Query: 469 RIERCSMSGEH 479
IE+ M+G
Sbjct: 546 MIEKIDMTGRE 556
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 226 bits (577), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 154/490 (31%), Positives = 250/490 (51%), Gaps = 63/490 (12%)
Query: 348 IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEVLGSDSRVGIPNCRP 405
++ S+L D + +YW D L T+ ++GS E V F L+ P
Sbjct: 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDY---------PEGMA 86
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
D W+GKNLYW ++ ++IEV+KL GQ R+ L+ D++SPRA+ALDP G ++WT+W
Sbjct: 87 VD--WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG 144
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
K P+I+R +M G R+ +V NGLT+DY R+YW D ++ I + G
Sbjct: 145 K-PKIDRAAMDGSERTTLV------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-I 584
+ V+ D L HPF + +++++YWTDW S+ RANK +G + T+IQ L I
Sbjct: 198 LNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDI 254
Query: 585 YVNGVVKKS---PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIF 641
V ++S C +NG+CSHLCL G + C CP L +DN+TC A + F++F
Sbjct: 255 LVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 313
Query: 642 SRPREIRGVDLEHPYYHTIPTISIPQVFSPNN---LNFDAANKKIYWTDQEYNEVKRSSI 698
S+ I + ++ P I +P + S N +++D +K++YW D N ++++
Sbjct: 314 SQKSAINRMVIDE---QQSPDIILP-IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 699 VGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSS 758
G Q VV SS+ +++ P L+ID ++ +I +
Sbjct: 370 DGSQGFTVV-------------VSSVPSQNLEI-------QPYDLSIDIYSR--YIYWTC 407
Query: 759 PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMA 818
+ I V L+G +L E + + ++ V P KG M+++N+ ++ IE A
Sbjct: 408 EATNVINVTRLDGRSVGVVLKGEQD------RPRAVVVNPEKGYMYFTNLQERSPKIERA 461
Query: 819 FMDGTKRETV 828
+DGT+RE +
Sbjct: 462 ALDGTEREVL 471
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 34/293 (11%)
Query: 355 VIDYN--QDILYWCDSHLNTVESVRVDGSE-------RTVSFNLEVLGSDSRVGIPNCRP 405
IDY+ LYW DS N + + DGS+ S NLE+ D + I
Sbjct: 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDI----- 398
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+ +YW + I V +L G+ ++ G+ + PRA+ ++P G +++T+
Sbjct: 399 -----YSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE 453
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525
++P+IER ++ G R V L S + P L LD +L +++W D+ I + G
Sbjct: 454 RSPKIERAALDGTEREV-----LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSG 508
Query: 526 KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIY 585
+ +VL + + L P + +FEN +YW D + + + + T +Q + Q
Sbjct: 509 ANR-IVLEDSNIL-QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSD 565
Query: 586 VNGV-------VKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
++ V ++ PC +NG CSH+CL+ +GT +C CP + L+ D +C
Sbjct: 566 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 139/269 (51%), Gaps = 39/269 (14%)
Query: 222 FVIFSNRHELRGVDLRTFN--VIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNAT 279
F++FS R ++R + L T N V ++ +K ALDF T N ++WTD+ I A
Sbjct: 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDF--DVTDNRIYWTDISLKTISRAF 65
Query: 280 LIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN 339
+ G++L + VV+ GL EG+AVDW+GKNLY W+ + +N IE + + G++
Sbjct: 66 MNGSALEH---VVEFGLDYPEGMAVDWLGKNLY-----WADTGTNR----IEVSKLDGQH 113
Query: 340 RSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDSRV 398
R LV K++ P +L +D + +YW + ++ +DGSERT
Sbjct: 114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL------------ 161
Query: 399 GIPNCRPEDNLWI---GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
+PN + L I + LYW + + + IE + + G R +IA D+ P L
Sbjct: 162 -VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LNREVIADDL--PHPFGLTQYQ 217
Query: 456 GLLFWTDWDSKAPRIERCS-MSGEHRSVI 483
++WTDW ++ IER + SG++R++I
Sbjct: 218 DYIYWTDWSRRS--IERANKTSGQNRTII 244
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 37/192 (19%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
F++FSR +IR + LE + I + V + L+FD + +IYWTD + R+
Sbjct: 8 FLLFSRRADIRRISLETNNNNV--AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ G ++ VV EF G+ +P G+A+DW+ +N++ A +
Sbjct: 66 MNGSALEHVV----EF----------------------GLDYPEGMAVDWLGKNLYWADT 99
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V L+G+++ ++ + L ++A+ P +G M+W+ + I+
Sbjct: 100 G--TNRIEVSKLDGQHRQVLVWKD------LDSPRALALDPAEGFMYWTEWGGK-PKIDR 150
Query: 818 AFMDGTKRETVV 829
A MDG++R T+V
Sbjct: 151 AAMDGSERTTLV 162
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 42/311 (13%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGV---D 235
G CS C +V + C C A Y L D TC + + F++FS + + + +
Sbjct: 273 GHCSHLC-LAVPVGGFVCGCPAHYSLNADNRTCSAPTT-----FLLFSQKSAINRMVIDE 326
Query: 236 LRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295
++ ++I I SL+N A+D Y P ++W D + I A G+ VVV +
Sbjct: 327 QQSPDIILPIHSLRNVRAID--YDPLDKQLYWIDSRQNMIRKAQEDGS--QGFTVVVSSV 382
Query: 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLV 355
S + + ++Y + +W+ +N I + G + ++ P ++V
Sbjct: 383 PSQNLEIQPYDLSIDIYSRYIYWTCEATNV----INVTRLDGRSVGVVLKGEQDRPRAVV 438
Query: 356 IDYNQDILYWCDSHLNT--VESVRVDGSERTVSFNLEV-----LGSDSRVGIPNCRPEDN 408
++ + +Y+ + + +E +DG+ER V F + L DSR+G
Sbjct: 439 VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLG--------- 489
Query: 409 LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
L+W +S+L +IE + LSG R L ++ P + + + L+W D +
Sbjct: 490 -----KLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENW--LYWI--DKQQQ 540
Query: 469 RIERCSMSGEH 479
IE+ M+G
Sbjct: 541 MIEKIDMTGRE 551
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 177/314 (56%), Gaps = 22/314 (7%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ ++ ++YW D ++ + +E N+ V G
Sbjct: 19 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL 76
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 77 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 130
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R +I+ ++ WPNGLTLDY+ ++YW DAK
Sbjct: 131 GFMYWTDW-GEVPKIERAGMDGSSRFIIINSEIY-----WPNGLTLDYEEQKLYWADAKL 184
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 185 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 242
Query: 576 QRTLTQPF-IYVNGVVKK----SPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P I+ ++ +PC ++NG CSHLCL+ + Y+C CP +KL+ + K
Sbjct: 243 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 302
Query: 630 TCQVADSQFIIFSR 643
TC+ ++ ++ +R
Sbjct: 303 TCKDGATELLLLAR 316
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 126/251 (50%), Gaps = 27/251 (10%)
Query: 220 SPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYN 277
+P ++++NR +LR VD N ++ L++ A+DF ++ +++W+DV ++ I
Sbjct: 1 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIKR 58
Query: 278 ATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHG 337
N ++ VV +GL + +GLA DW+G+ LY W+ S +N IE + + G
Sbjct: 59 TEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLY-----WTDSETNR----IEVSNLDG 107
Query: 338 ENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDS 396
R L + + P ++ +D + +YW D + +E +DGS R + N E+
Sbjct: 108 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---- 163
Query: 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456
PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 164 ---WPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--D 216
Query: 457 LLFWTDWDSKA 467
+L+WTDW + +
Sbjct: 217 ILYWTDWSTHS 227
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 658 HTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGG--------------QI 703
++ + + + SP+ L D +K+YWTD E N ++ S++ G I
Sbjct: 65 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 124
Query: 704 QLVVDAVFEFYL----TPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
L + F ++ P +R+ + G +++++ I P+GL +D+ Q ++ A
Sbjct: 125 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA--DA 182
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+ I NL+G + ++ L+ I W
Sbjct: 183 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYW 220
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 170/307 (55%), Gaps = 22/307 (7%)
Query: 336 HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD 395
+G+ + +V ++ +++ ++ ++YW D ++ + +E N+ V G
Sbjct: 22 NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLL 79
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S G+ C W+G+ LYW +S ++IEV+ L G R+ L +++ PRAIALDP
Sbjct: 80 SPDGLA-CD-----WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS 133
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
G ++WTDW + P+IER M G R +I+ ++ WPNGLTLDY+ ++YW DAK
Sbjct: 134 GFMYWTDW-GEVPKIERAGMDGSSRFIIINSEIY-----WPNGLTLDYEEQKLYWADAKL 187
Query: 516 DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575
+ IH DG + V+ SL HPFA+ LFE+ +YWTDW T+S++ NK+ G + I
Sbjct: 188 NFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREI 245
Query: 576 QRTLTQP-----FIYVNGVVKKSPCEMNNGNCSHLCLIG-MNGTYKCQCPHVMKLMSDNK 629
+ P F +PC ++NG CSHLCL+ + Y+C CP +KL+ + K
Sbjct: 246 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGK 305
Query: 630 TCQVADS 636
TC+ +S
Sbjct: 306 TCKDGNS 312
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 27/252 (10%)
Query: 219 SSPFVIFSNRHELRGVDLRTF--NVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIY 276
S+P ++++NR +LR VD N ++ L++ A+DF ++ +++W+DV ++ I
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS--HGLIYWSDVSEEAIK 60
Query: 277 NATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH 336
N ++ VV +GL + +GLA DW+G+ LY W+ S +N IE + +
Sbjct: 61 RTEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLY-----WTDSETNR----IEVSNLD 109
Query: 337 GENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSD 395
G R L + + P ++ +D + +YW D + +E +DGS R + N E+
Sbjct: 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY--- 166
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 167 ----WPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED- 219
Query: 456 GLLFWTDWDSKA 467
+L+WTDW + +
Sbjct: 220 -ILYWTDWSTHS 230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 658 HTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGG--------------QI 703
++ + + + SP+ L D +K+YWTD E N ++ S++ G I
Sbjct: 68 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 127
Query: 704 QLVVDAVFEFYL----TPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
L + F ++ P +R+ + G +++++ I P+GL +D+ Q ++ A
Sbjct: 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA--DA 185
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+ I NL+G + ++ L+ I W
Sbjct: 186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYW 223
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/690 (26%), Positives = 280/690 (40%), Gaps = 88/690 (12%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI + CD D DC DGSDE + C C + F CN + CIP WACD PDC D
Sbjct: 118 CISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST-CIPQLWACDNDPDC--ED 172
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
SDE W + + S+P C EF C + CI + CDG P C
Sbjct: 173 GSDE---------WPQRCRGLYV-FQGDSSP-CSAFEFHC--LSGECIHSSWRCDGGPDC 219
Query: 123 FNGEDEMFC-------DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
+ DE C DE QC +C H + C +DM D + C + C
Sbjct: 220 KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC---KDM---SDEVGCVNVTLC 273
Query: 176 EAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKND-SSPFVIFSNRHELRGV 234
E N +KC H+G + D ++ D S + +E
Sbjct: 274 EG-------------PNKFKC--HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDN 318
Query: 235 DLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294
+ +V + + D + D D + L N +
Sbjct: 319 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 378
Query: 295 GLST-AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353
G A +G Y+F+ ++ + K + + L+ N++ +
Sbjct: 379 GFQLDPHTKACKAVGSIAYLFF---------TNRHEVRKMTLDRSEYTSLI-PNLRNVVA 428
Query: 354 LVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413
L + + +YW D + S ++D + S++ V+ D + P+ D WI
Sbjct: 429 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRD--IQAPDGLAVD--WIHS 483
Query: 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERC 473
N+YW +S L + VA G R+TL + PRAI +DP G ++WTDW + A +I++
Sbjct: 484 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKG 542
Query: 474 SMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533
++G + L+T WPNG+TLD R+YW+D+K SI ++ +G + +L
Sbjct: 543 GLNG-----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597
Query: 534 NHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYV------- 586
+ L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P V
Sbjct: 598 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQ 657
Query: 587 -NGVVKKSPCEMNNGNCSHLCLIG-----MNGTYKCQCPHVMKLMSDNKTCQVADSQFII 640
GV ++NG C +LCL + + C CP M L D ++C +
Sbjct: 658 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVA 717
Query: 641 FSRPREIR------GVDLEHPYYHTIPTIS 664
+R V +H +P S
Sbjct: 718 TQETSTVRLKVSSTAVRTQHTTTRPVPDTS 747
Score = 171 bits (433), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 206/481 (42%), Gaps = 112/481 (23%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ--------DRKCDESHFTCNETLRCIPLAWACD 53
TCI W CD D DC+DGSDE + C+ C F C + CI +W CD
Sbjct: 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCD 214
Query: 54 GQPDCGLNDTSDEDHCV--------------------------NDCTDWSDETNCTHSGN 87
G PDC D SDE++C DC D SDE C
Sbjct: 215 GGPDC--KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC----- 267
Query: 88 RTISAPACE-PHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF--CDEKQCLRSD--CH 142
++ CE P++F C CI VC+ C + DE C +CL ++ C
Sbjct: 268 --VNVTLCEGPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 323
Query: 143 HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY 202
H C + G+ C+CP L C + C+ TCSQ C YKC C G+
Sbjct: 324 HVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEEGF 380
Query: 203 ELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTA 262
+L+P CK+ S ++ F+NRHE+R + L +LI +L+N +ALD +
Sbjct: 381 QLDPHTKACKAVG---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV--AS 435
Query: 263 NMVFWTDVIDDKIYNATL-IGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY--------- 312
N ++W+D+ I + L + +S+ D V+ + +GLAVDWI N+Y
Sbjct: 436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 495
Query: 313 --------------------------------MFWAFWSLSPSNSSDGGIEKAGMHGENR 340
M+W W +P+ I+K G++G +
Sbjct: 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAK-----IKKGGLNGVDI 549
Query: 341 SPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI 400
LVT+NIQWP+ + +D LYW DS L+++ S+ V+G R +L + R+
Sbjct: 550 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-----ILEDEKRLAH 604
Query: 401 P 401
P
Sbjct: 605 P 605
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 64/153 (41%), Gaps = 39/153 (25%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLN 61
CI W CDG +C+DGSDE E C C F+C + RCIP W CDGQ DC +
Sbjct: 36 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC--D 93
Query: 62 DTSDEDHCV--------------------------NDCTDWSDETNCTHSGNRTISAPAC 95
+ SDE C DC D SDE +C C
Sbjct: 94 NGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC--------PVLTC 145
Query: 96 EPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
P F C TCIP+ CD +P C +G DE
Sbjct: 146 GPASFQCNS--STCIPQLWACDNDPDCEDGSDE 176
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 36/207 (17%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS-QFIIFSRPREIRGVDLEHPYYHTI 660
CS LC + + G YKCQC +L K C+ S ++ F+ E+R + L+ Y ++
Sbjct: 361 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 419
Query: 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720
IP + + L+ + A+ +IYW+D + + I Q+
Sbjct: 420 ----IPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLD---------------- 454
Query: 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSN 780
R+ V V+ I P GLA+DWI N++ S + V + +G + T+
Sbjct: 455 RAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRE 511
Query: 781 ESNDTSTLSKISSIAVWPVKGKMFWSN 807
SK +I V PV G M+W++
Sbjct: 512 NG------SKPRAIVVDPVHGFMYWTD 532
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 73/197 (37%), Gaps = 24/197 (12%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTI 90
+C+ + F C + +CI W CDG +C D SDE T
Sbjct: 23 RCERNEFQCQDG-KCISYKWVCDGSAEC--QDGSDESQ-------------------ETC 60
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCH-HDCYNTP 149
+ C+ +F C + CIP+ CDG+ C NG DE C K C + + HD
Sbjct: 61 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCIS 120
Query: 150 EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTC-SQDCEPSVSNNSYKCTCHAGYELEPDM 208
F+C RD D +C L A C S C P + C G + P
Sbjct: 121 RQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 180
Query: 209 FTCKSKSKNDSSPFVIF 225
+ DSSP F
Sbjct: 181 CRGLYVFQGDSSPCSAF 197
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 176/651 (27%), Positives = 270/651 (41%), Gaps = 82/651 (12%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI + CD D DC DGSDE + C C + F CN + CIP WACD PDC D
Sbjct: 100 CISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST-CIPQLWACDNDPDC--ED 154
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
SDE W + + S+P C EF C + CI + CDG P C
Sbjct: 155 GSDE---------WPQRCRGLYV-FQGDSSP-CSAFEFHC--LSGECIHSSWRCDGGPDC 201
Query: 123 FNGEDEMFC-------DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
+ DE C DE QC +C H + C +DM D + C + C
Sbjct: 202 KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDC---KDM---SDEVGCVNVTLC 255
Query: 176 EAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKND-SSPFVIFSNRHELRGV 234
E N +KC H+G + D ++ D S + +E
Sbjct: 256 EG-------------PNKFKC--HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDN 300
Query: 235 DLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294
+ +V + + D + D D + L N +
Sbjct: 301 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE 360
Query: 295 GLST-AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353
G A +G Y+F+ ++ + K + + L+ N++ +
Sbjct: 361 GFQLDPHTKACKAVGSIAYLFF---------TNRHEVRKMTLDRSEYTSLI-PNLRNVVA 410
Query: 354 LVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413
L + + +YW D + S ++D + S++ V+ D + P+ D WI
Sbjct: 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT-VISRD--IQAPDGLAVD--WIHS 465
Query: 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERC 473
N+YW +S L + VA G R+TL PRAI +DP G ++WTDW + A +I++
Sbjct: 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKG 524
Query: 474 SMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533
++G + L+T WPNG+TLD R+YW+D+K SI ++ +G + +L
Sbjct: 525 GLNG-----VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 579
Query: 534 NHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYV------- 586
+ L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P V
Sbjct: 580 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQ 639
Query: 587 -NGVVKKSPCEMNNGNCSHLCLIG-----MNGTYKCQCPHVMKLMSDNKTC 631
GV ++NG C +LCL + + C CP M L D ++C
Sbjct: 640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
Score = 169 bits (427), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 206/481 (42%), Gaps = 112/481 (23%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ--------DRKCDESHFTCNETLRCIPLAWACD 53
TCI W CD D DC+DGSDE + C+ C F C + CI +W CD
Sbjct: 138 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCD 196
Query: 54 GQPDCGLNDTSDEDHCV--------------------------NDCTDWSDETNCTHSGN 87
G PDC D SDE++C DC D SDE C
Sbjct: 197 GGPDC--KDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC----- 249
Query: 88 RTISAPACE-PHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF--CDEKQCLRSD--CH 142
++ CE P++F C CI VC+ C + DE C +CL ++ C
Sbjct: 250 --VNVTLCEGPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 305
Query: 143 HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY 202
H C + G+ C+CP L C + C+ TCSQ C YKC C G+
Sbjct: 306 HVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEEGF 362
Query: 203 ELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTA 262
+L+P CK+ S ++ F+NRHE+R + L +LI +L+N +ALD +
Sbjct: 363 QLDPHTKACKAVG---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV--AS 417
Query: 263 NMVFWTDVIDDKIYNATL-IGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY--------- 312
N ++W+D+ I + L + +S+ D V+ + +GLAVDWI N+Y
Sbjct: 418 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTV 477
Query: 313 --------------------------------MFWAFWSLSPSNSSDGGIEKAGMHGENR 340
M+W W +P+ I+K G++G +
Sbjct: 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAK-----IKKGGLNGVDI 531
Query: 341 SPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI 400
LVT+NIQWP+ + +D LYW DS L+++ S+ V+G R +L + R+
Sbjct: 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-----ILEDEKRLAH 586
Query: 401 P 401
P
Sbjct: 587 P 587
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 64/153 (41%), Gaps = 39/153 (25%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLN 61
CI W CDG +C+DGSDE E C C F+C + RCIP W CDGQ DC +
Sbjct: 18 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC--D 75
Query: 62 DTSDEDHCV--------------------------NDCTDWSDETNCTHSGNRTISAPAC 95
+ SDE C DC D SDE +C C
Sbjct: 76 NGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC--------PVLTC 127
Query: 96 EPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
P F C TCIP+ CD +P C +G DE
Sbjct: 128 GPASFQCNS--STCIPQLWACDNDPDCEDGSDE 158
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS-QFIIFSRPREIRGVDLEHPYYHTI 660
CS LC + + G YKCQC +L K C+ S ++ F+ E+R + L+ Y ++
Sbjct: 343 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 401
Query: 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720
IP + + L+ + A+ +IYW+D + + I Q+ +S
Sbjct: 402 ----IPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLDRA---------HGVSS 443
Query: 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSN 780
+++ IQ P GLA+DWI N++ S + V + +G + T+
Sbjct: 444 YDTVISRDIQA--------PDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRE 493
Query: 781 ESNDTSTLSKISSIAVWPVKGKMFWSN 807
+ SK +I V PV G M+W++
Sbjct: 494 QG------SKPRAIVVDPVHGFMYWTD 514
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 23/143 (16%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTI 90
+C+ + F C + +CI W CDG +C D SDE+ T
Sbjct: 5 RCERNEFQCQDG-KCISYKWVCDGSA---------------ECQDGSDES------QETC 42
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCH-HDCYNTP 149
+ C+ +F C + CIP+ CDG+ C NG DE C K C + + HD
Sbjct: 43 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCIS 102
Query: 150 EGFMCVCPRDMYLQPDLITCSYL 172
F+C RD D +C L
Sbjct: 103 RQFVCDSDRDCLDGSDEASCPVL 125
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 151/298 (50%), Gaps = 29/298 (9%)
Query: 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEVLGSDSRVGI 400
L+ N++ +L + +++++W D L+ + ++GS E VS LE G +
Sbjct: 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD-- 167
Query: 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFW 460
W+ LYW +S +IEVA L G R+ L+ +E PRAIAL P G ++W
Sbjct: 168 ---------WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 218
Query: 461 TDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520
TDW PRIE SM G R +I L WPNGLT+DY R+YW+DAK I
Sbjct: 219 TDW-GNTPRIEASSMDGSGRRIIADTHLF-----WPNGLTIDYAGRRMYWVDAKHHVIER 272
Query: 521 VTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLT 580
DG V+S L HPFAI +FE+ +YWTDW T S+ ANK+ G + +I+ L
Sbjct: 273 ANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLH 330
Query: 581 QPFIYVNGVVKKSP-----CEMNNGNCSHLCL-IGMNGTYKCQCPHVMKLMSDNKTCQ 632
P ++ P C NNG C+HLCL G N Y C CP + ++ + Q
Sbjct: 331 FPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQN--YTCACPTGFRKINSHACAQ 386
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/328 (32%), Positives = 167/328 (50%), Gaps = 31/328 (9%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
C C C C L D TC ++ C G CSQ C + S +++C C A
Sbjct: 13 CAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGC--TNSEGAFQCWCEA 70
Query: 201 GYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTP 260
GYEL PD +CK+ P ++F+NR ++R V L+++L+N IALDF++
Sbjct: 71 GYELRPDRRSCKALG---PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR- 126
Query: 261 TANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSL 320
+VFW+DV D+I A L G SN++ VV TGL + GLAVDW+ LY W
Sbjct: 127 -RELVFWSDVTLDRILRANLNG---SNVEEVVSTGLESPGGLAVDWVHDKLY--W----- 175
Query: 321 SPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCD-SHLNTVESVRVD 379
++S IE A + G +R L+ ++++ P ++ + + +YW D + +E+ +D
Sbjct: 176 --TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233
Query: 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI 439
GS R + +D+ + PN D + G+ +YWV++ IE A L G R+ +I
Sbjct: 234 GSGRRII-------ADTHLFWPNGLTID--YAGRRMYWVDAKHHVIERANLDGSHRKAVI 284
Query: 440 AGDMESPRAIALDPRFGLLFWTDWDSKA 467
+ + P AI + L+WTDW +K+
Sbjct: 285 SQGLPHPFAITVFEDS--LYWTDWHTKS 310
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ-FIIFSRPREIRGVDLEHPYYH 658
G CS C G ++C C +L D ++C+ + ++F+ +IR V L H +
Sbjct: 51 GYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV-LPHRSEY 108
Query: 659 TIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPL 718
T+ ++ + L+F + ++W+D + +D +
Sbjct: 109 TLLLNNLENAIA---LDFHHRRELVFWSD-----------------VTLDRIL------- 141
Query: 719 SKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTIL 778
R+++ G ++ VV G+ P GLA+DW+ ++ S S+I V NL+G ++ +L
Sbjct: 142 --RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVLL 197
Query: 779 SNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV 829
+L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 198 ------WQSLEKPRAIALHPMEGTIYWTDW-GNTPRIEASSMDGSGRRIIA 241
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 78/184 (42%), Gaps = 29/184 (15%)
Query: 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE----------------- 712
SP L D + K+YWTD + ++ +++ G ++++ E
Sbjct: 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 219
Query: 713 -FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG 771
+ TP + SS+ G +++ D + P+GL ID+ + M+ I NL+G
Sbjct: 220 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV--DAKHHVIERANLDG 277
Query: 772 EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ 831
++ ++S L +I V+ + ++W++ + + F G +E + ++
Sbjct: 278 SHRKAVIS------QGLPHPFAITVF--EDSLYWTDWHTKSINSANKFT-GKNQEIIRNK 328
Query: 832 KKYP 835
+P
Sbjct: 329 LHFP 332
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 47/213 (22%)
Query: 497 NGLTLDYQLTR--IYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWT 554
N + LD+ R ++W D D I +G + V+S A+ + +YWT
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176
Query: 555 DWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTY 614
D T+ + AN L+ ++L +P ++ + + GN + M+G+
Sbjct: 177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236
Query: 615 KCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNL 674
+ ++++D +F PN L
Sbjct: 237 R-------RIIADT--------------------------------------HLFWPNGL 251
Query: 675 NFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVV 707
D A +++YW D +++ ++R+++ G + V+
Sbjct: 252 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 284
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/285 (37%), Positives = 146/285 (51%), Gaps = 29/285 (10%)
Query: 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVSFNLEVLGSDSRVGI 400
L+ N++ +L + +++++W D L+ + ++GS E VS LE G +
Sbjct: 67 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD-- 124
Query: 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFW 460
W+ LYW +S +IEVA L G R+ L+ +E PRAIAL P G ++W
Sbjct: 125 ---------WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175
Query: 461 TDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520
TDW PRIE SM G R +I L WPNGLT+DY R+YW+DAK I
Sbjct: 176 TDW-GNTPRIEASSMDGSGRRIIADTHLF-----WPNGLTIDYAGRRMYWVDAKHHVIER 229
Query: 521 VTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLT 580
DG V+S L HPFAI +FE+ +YWTDW T S+ ANK+ G + +I+ L
Sbjct: 230 ANLDGSHRKAVIS--QGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLH 287
Query: 581 QPFIYVNGVVKKSP-----CEMNNGNCSHLCL-IGMNGTYKCQCP 619
P ++ P C NNG C+HLCL G N Y C CP
Sbjct: 288 FPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQN--YTCACP 330
Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 156/294 (53%), Gaps = 31/294 (10%)
Query: 175 CEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGV 234
C G CSQ C + S +++C C AGYEL PD +CK+ P ++F+NR ++R V
Sbjct: 4 CAEEGYCSQGC--TNSEGAFQCWCEAGYELRPDRRSCKALG---PEPVLLFANRIDIRQV 58
Query: 235 DLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294
L+++L+N IALDF++ +VFW+DV D+I A L G SN++ VV T
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNG---SNVEEVVST 113
Query: 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSL 354
GL + GLAVDW+ LY ++S IE A + G +R L+ ++++ P ++
Sbjct: 114 GLESPGGLAVDWVHDKLYW---------TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 164
Query: 355 VIDYNQDILYWCD-SHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413
+ + +YW D + +E+ +DGS R + +D+ + PN D + G+
Sbjct: 165 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-------ADTHLFWPNGLTID--YAGR 215
Query: 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKA 467
+YWV++ IE A L G R+ +I+ + P AI + L+WTDW +K+
Sbjct: 216 RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFE--DSLYWTDWHTKS 267
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 41/231 (17%)
Query: 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ-FIIFSRPREIRGVDLEHPYYH 658
G CS C G ++C C +L D ++C+ + ++F+ +IR V L H +
Sbjct: 8 GYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV-LPHRSEY 65
Query: 659 TIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPL 718
T+ ++ + L+F + ++W+D + +D +
Sbjct: 66 TLLLNNLENAIA---LDFHHRRELVFWSD-----------------VTLDRIL------- 98
Query: 719 SKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTIL 778
R+++ G ++ VV G+ P GLA+DW+ ++ S S+I V NL+G ++ +L
Sbjct: 99 --RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAHRKVLL 154
Query: 779 SNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVV 829
+L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 155 ------WQSLEKPRAIALHPMEGTIYWTD-WGNTPRIEASSMDGSGRRIIA 198
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 47/213 (22%)
Query: 497 NGLTLDYQLTR--IYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWT 554
N + LD+ R ++W D D I +G + V+S A+ + +YWT
Sbjct: 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 133
Query: 555 DWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTY 614
D T+ + AN L+ ++L +P ++ + + GN + M+G+
Sbjct: 134 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193
Query: 615 KCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNL 674
+ ++++D +F PN L
Sbjct: 194 R-------RIIADT--------------------------------------HLFWPNGL 208
Query: 675 NFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVV 707
D A +++YW D +++ ++R+++ G + V+
Sbjct: 209 TIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 241
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 78/184 (42%), Gaps = 29/184 (15%)
Query: 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE----------------- 712
SP L D + K+YWTD + ++ +++ G ++++ E
Sbjct: 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 176
Query: 713 -FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG 771
+ TP + SS+ G +++ D + P+GL ID+ + M+ I NL+G
Sbjct: 177 DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV--DAKHHVIERANLDG 234
Query: 772 EYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ 831
++ ++S L +I V+ + ++W++ + + F G +E + ++
Sbjct: 235 SHRKAVIS------QGLPHPFAITVF--EDSLYWTDWHTKSINSANKFT-GKNQEIIRNK 285
Query: 832 KKYP 835
+P
Sbjct: 286 LHFP 289
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 145/555 (26%), Positives = 227/555 (40%), Gaps = 137/555 (24%)
Query: 95 CE-PHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF--CDEKQCLRSD--CHHDCYNTP 149
CE P++F C CI VC+ C + DE C +CL ++ C H C +
Sbjct: 1 CEGPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLK 58
Query: 150 EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209
G+ C+CP L C + C+ TCSQ C YKC C G++L+P
Sbjct: 59 IGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEEGFQLDPHTK 115
Query: 210 TCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTD 269
CK+ S ++ F+NRHE+R + L +LI +L+N +ALD +N ++W+D
Sbjct: 116 ACKAVG---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSD 170
Query: 270 VIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329
+ + ++ T L A G++
Sbjct: 171 L----------------SQRMICSTQLDRAHGVS-------------------------- 188
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
+ +++++IQ P L +D+ +YW DS L TV G +R F
Sbjct: 189 ---------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 239
Query: 390 EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
GS R AI
Sbjct: 240 N--GSKPR--------------------------------------------------AI 247
Query: 450 ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509
+DP G ++WTDW + A +I++ ++G + L+T WPNG+TLD R+Y
Sbjct: 248 VVDPVHGFMYWTDWGTPA-KIKKGGLNG-----VDIYSLVTENIQWPNGITLDLLSGRLY 301
Query: 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNG 569
W+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ AN+ G
Sbjct: 302 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 361
Query: 570 SDVTLIQRTLTQPFIYV--------NGVVKKSPCEMNNGNCSHLCLIG-----MNGTYKC 616
SDV L+ L P V GV ++NG C +LCL + + C
Sbjct: 362 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC 421
Query: 617 QCPHVMKLMSDNKTC 631
CP M L D ++C
Sbjct: 422 ACPDGMLLARDMRSC 436
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 36/207 (17%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS-QFIIFSRPREIRGVDLEHPYYHTI 660
CS LC + + G YKCQC +L K C+ S ++ F+ E+R + L+ Y ++
Sbjct: 89 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 147
Query: 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720
IP + + L+ + A+ +IYW+D + + I Q+
Sbjct: 148 ----IPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLD---------------- 182
Query: 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSN 780
R+ V V+ I P GLA+DWI N++ S + V + +G + T+
Sbjct: 183 RAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRE 239
Query: 781 ESNDTSTLSKISSIAVWPVKGKMFWSN 807
SK +I V PV G M+W++
Sbjct: 240 NG------SKPRAIVVDPVHGFMYWTD 260
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/512 (25%), Positives = 209/512 (40%), Gaps = 132/512 (25%)
Query: 135 QCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN 192
+CL ++ C H C + G+ C+CP L C + C+ TCSQ C
Sbjct: 2 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNL--EG 58
Query: 193 SYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTI 252
YKC C G++L+P CK+ S ++ F+NRHE+R + L +LI +L+N +
Sbjct: 59 GYKCQCEEGFQLDPHTKACKAVG---SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 253 ALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY 312
ALD +N ++W+D+ + ++ T L A G++
Sbjct: 116 ALDTEVA--SNRIYWSDL----------------SQRMICSTQLDRAHGVS--------- 148
Query: 313 MFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNT 372
+ +++++IQ P L +D+ +YW DS L T
Sbjct: 149 --------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 182
Query: 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG 432
V G +R F GS R
Sbjct: 183 VSVADTKGVKRKTLFREN--GSKPRA---------------------------------- 206
Query: 433 QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492
I +DP G ++WTDW + A +I++ ++G + L+T
Sbjct: 207 ----------------IVVDPVHGFMYWTDWGTPA-KIKKGGLNG-----VDIYSLVTEN 244
Query: 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVY 552
WPNG+TLD R+YW+D+K SI ++ +G + +L + L HPF++A+FE+ V+
Sbjct: 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304
Query: 553 WTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYV--------NGVVKKSPCEMNNGNCSH 604
WTD ++ AN+ GSDV L+ L P V GV ++NG C +
Sbjct: 305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQY 364
Query: 605 LCLIG-----MNGTYKCQCPHVMKLMSDNKTC 631
LCL + + C CP M L D ++C
Sbjct: 365 LCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 36/207 (17%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS-QFIIFSRPREIRGVDLEHPYYHTI 660
CS LC + + G YKCQC +L K C+ S ++ F+ E+R + L+ Y ++
Sbjct: 49 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 107
Query: 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720
IP + + L+ + A+ +IYW+D + + I Q+
Sbjct: 108 ----IPNLRNVVALDTEVASNRIYWSD-----LSQRMICSTQLD---------------- 142
Query: 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSN 780
R+ V V+ I P GLA+DWI N++ S + V + +G + T+
Sbjct: 143 RAHGV-SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRE 199
Query: 781 ESNDTSTLSKISSIAVWPVKGKMFWSN 807
SK +I V PV G M+W++
Sbjct: 200 NG------SKPRAIVVDPVHGFMYWTD 220
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 24/282 (8%)
Query: 363 LYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL 422
+YW D + S ++D + S++ V+ D + P+ D WI N+YW +S L
Sbjct: 44 IYWSDLSQRMICSTQLDRAHGVSSYD-TVISRD--IQAPDGLAVD--WIHSNIYWTDSVL 98
Query: 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482
+ VA G R+TL + PRAI +DP G ++WTDW + A +I++ ++G
Sbjct: 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA-KIKKGGLNG----- 152
Query: 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPF 542
+ L+T WPNG+TLD R+YW+D+K SI ++ +G + +L + L HPF
Sbjct: 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF 212
Query: 543 AIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQP--FIYVNGVVKKSP---CE- 596
++A+FE+ V+WTD ++ AN+ GSDV L+ L P + + + + CE
Sbjct: 213 SLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCER 272
Query: 597 --MNNGNCSHLCLIG-----MNGTYKCQCPHVMKLMSDNKTC 631
++NG C +LCL + + C CP M L D ++C
Sbjct: 273 TTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 55/222 (24%)
Query: 222 FVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATL- 280
++ F+NRHE+R + L +LI +L+N +ALD +N ++W+D+ I + L
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV--ASNRIYWSDLSQRMICSTQLD 60
Query: 281 IGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY---------------------------- 312
+ +S+ D V+ + +GLAVDWI N+Y
Sbjct: 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 313 -------------MFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYN 359
M+W W + I+K G++G + LVT+NIQWP+ + +D
Sbjct: 121 KPRAIVVDPVHGFMYWTDW------GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL 174
Query: 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIP 401
LYW DS L+++ S+ V+G R +L + R+ P
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKT-----ILEDEKRLAHP 211
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 34/170 (20%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++ F+ E+R + L+ Y ++ IP + + L+ + A+ +IYW+D + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNRIYWSD-----LSQRM 53
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
I Q+ R+ V V+ I P GLA+DWI N++ S
Sbjct: 54 ICSTQLD----------------RAHGVS-SYDTVISRDIQAPDGLAVDWIHSNIYWTDS 96
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSN 807
+ V + +G + T+ SK +I V PV G M+W++
Sbjct: 97 --VLGTVSVADTKGVKRKTLFRENG------SKPRAIVVDPVHGFMYWTD 138
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 17/210 (8%)
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
L D ++YW D ++ + G E T + LGS + + + +G
Sbjct: 40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDH--------LG 90
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
+ ++W +S LD+IEVAK+ G RR L + +PR I DP G L+WTDW+ P+IE
Sbjct: 91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIET 150
Query: 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVL 532
M G +R ++ + +L PNGLT D +++ W+DA + + VL
Sbjct: 151 SHMDGTNRRILAQDNL-----GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205
Query: 533 SNHDSLTHPFAIALFENHVYWTDWRTNSVI 562
+ L +PFA+ + ++Y+TDW+TNSVI
Sbjct: 206 ---EGLQYPFAVTSYGKNLYYTDWKTNSVI 232
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 246 SSLKNTIALDFYYTPTA-----------NMVFWTDVIDDKIYNATLIGNSLSNIDVVVQT 294
+++K T A F + P +V+WTD+ + I A+L G + I ++
Sbjct: 20 NTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI---IRQ 76
Query: 295 GLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSL 354
L + EG+A+D +G+ + FW ++S IE A M G R L + P +
Sbjct: 77 DLGSPEGIALDHLGRTI--FW-------TDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 355 VIDYNQDILYWCDSHLNT--VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
V D + LYW D + + +E+ +DG+ R +L D+ +G+PN D
Sbjct: 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------RILAQDN-LGLPNGLTFDAF--S 178
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL-LFWTDWDSKA 467
L WV++ + E + RR ++ G ++ P A+ +G L++TDW + +
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVT---SYGKNLYYTDWKTNS 230
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 34/158 (21%)
Query: 673 NLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLV 732
L FD +K +YWTD + SI R+S+ GG+ +
Sbjct: 40 GLAFDCVDKVVYWTD-----ISEPSI---------------------GRASLHGGEPTTI 73
Query: 733 VDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKIS 792
+ + P G+A+D + + +F S +I V ++G + + + L
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQRRVLFD------TGLVNPR 125
Query: 793 SIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
I PV+G ++W++ + IE + MDGT R +
Sbjct: 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLN 61
CI W CDG +C+DGSDE E C C F+C + RCIP W CDGQ DC +
Sbjct: 20 CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDC--D 77
Query: 62 DTSDEDHC 69
+ SDE C
Sbjct: 78 NGSDEQGC 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 22/101 (21%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTI 90
+C+ + F C + +CI W CDG +C D SDE T
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAEC--QDGSDESQ-------------------ETC 44
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
+ C+ +F C + CIP+ CDG+ C NG DE C
Sbjct: 45 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 85
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 11/77 (14%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ--------DRKCDESHFTCNETLRCIPLAWACD 53
TCI W CD D DC+DGSDE + C+ C F C + CI +W CD
Sbjct: 18 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHC-LSGECIHSSWRCD 76
Query: 54 GQPDCGLNDTSDEDHCV 70
G PDC D SDE++C
Sbjct: 77 GGPDC--KDKSDEENCA 91
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTIS 91
C + F CN + CIP WACD PDC D SDE W + + S
Sbjct: 7 CGPASFQCNSST-CIPQLWACDNDPDC--EDGSDE---------WPQRCRGLYV-FQGDS 53
Query: 92 APACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
+P C EF C + CI + CDG P C + DE C
Sbjct: 54 SP-CSAFEFHC--LSGECIHSSWRCDGGPDCKDKSDEENC 90
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI + CD D DC DGSDE + C C + F CN + CIP WACD PDC D
Sbjct: 15 CISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST-CIPQLWACDNDPDC--ED 69
Query: 63 TSDE 66
SDE
Sbjct: 70 GSDE 73
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ 28
TCI W CD D DC+DGSDE + C+
Sbjct: 53 TCIPQLWACDNDPDCEDGSDEWPQRCR 79
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 26/99 (26%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
+ C ++ F C++ +CI + CD DC D SDE +C
Sbjct: 1 KTCSQAEFRCHDG-KCISRQFVCDSD---------------RDCLDGSDEASCP------ 38
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
C P F C TCIP+ CD +P C +G DE
Sbjct: 39 --VLTCGPASFQCNSS--TCIPQLWACDNDPDCEDGSDE 73
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double
Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of
Lrp, Cr56, And First Domain Of Receptor Associated
Protein, Rap- D1
Length = 82
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI W CD D+DC D SDE A + FTCN RCI + W CD DCG D
Sbjct: 17 CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG-RCININWRCDNDNDCG--D 73
Query: 63 TSDEDHC 69
SDE C
Sbjct: 74 NSDEAGC 80
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 31/83 (37%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED-------------------HCV 70
R C + F+C + RCIP++W CD DCG D SDE C+
Sbjct: 3 RTCPPNQFSC-ASGRCIPISWTCDLDDDCG--DRSDESASCAYPTCFPLTQFTCNNGRCI 59
Query: 71 ---------NDCTDWSDETNCTH 84
NDC D SDE C+H
Sbjct: 60 NINWRCDNDNDCGDNSDEAGCSH 82
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 21/39 (53%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
P+C+ HE C CI K VCDG C NGEDE C
Sbjct: 53 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 91
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 16/60 (26%)
Query: 25 EHCQDRKCDESHFTCN-ETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCT 83
E +D CDE C + +CI + CDG NDC + DE +CT
Sbjct: 48 EELEDPSCDEHEHQCGGDDPQCISKLFVCDGH---------------NDCRNGEDEKDCT 92
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 135 QCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN 192
+CL ++ C H C + G+ C+CP L C + C+ TCSQ C
Sbjct: 4 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNL--EG 60
Query: 193 SYKCTCHAGYELEPDMFTCKS 213
YKC C G++L+P CK+
Sbjct: 61 GYKCQCEEGFQLDPHTKACKA 81
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 135 QCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN 192
+CL ++ C H C + G+ C+CP L C + C+ TCSQ C
Sbjct: 7 ECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNL--EG 63
Query: 193 SYKCTCHAGYELEPDMFTCK 212
YKC C G++L+P CK
Sbjct: 64 GYKCQCEEGFQLDPHTKACK 83
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 588 GVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQ 637
G + + C NNG CSH+C + Y+C CP +L++ + + + Q
Sbjct: 1 GAMGTNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRRCEDIDECQ 49
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
CS LC + + G YKCQC +L K C+
Sbjct: 54 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 70 VNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEM 129
+NDC D SDE C AC+ F C+ + CIP C+GE C GEDE+
Sbjct: 226 INDCGDQSDELCC----------KACQGKGFHCKSGV--CIPSQYQCNGEVDCITGEDEV 273
Query: 130 FC 131
C
Sbjct: 274 GC 275
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 10 CDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDC 58
CDG DC D SDEL + C F C + CIP + C+G+ DC
Sbjct: 223 CDGINDCGDQSDELC----CKACQGKGFHCKSGV-CIPSQYQCNGEVDC 266
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 135 QCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN 192
+CL ++ C + C + G+ C+CP L C + C+ TCSQ C
Sbjct: 7 ECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNL--EG 63
Query: 193 SYKCTCHAGYELEPDMFTCK 212
YKC C G++L+P CK
Sbjct: 64 GYKCQCEEGFQLDPHTKACK 83
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 602 CSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
CS LC + + G YKCQC +L K C+
Sbjct: 54 CSQLC-VNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 28 QDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
+ + C S F+C T C+P W CDG DC D +DE
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADE 41
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
C+ W CDGD+DC DG+DE
Sbjct: 22 CVPERWLCDGDKDCADGADE 41
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
+ C P F C C+P+ +CDG+ C +G DE
Sbjct: 4 LEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADE 41
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDH 68
C + F CN + RCIP W CDG DCG D SDE H
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG--DYSDETH 38
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDR 30
CI +W CDGD DC D SDE +C ++
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module
From Ldlr Determined With Haddock
Length = 40
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQ 28
TCI W CD D DC+DGSDE + C+
Sbjct: 13 TCIPQLWACDNDPDCEDGSDEWPQRCR 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
C + F CN + CIP WACD PDC D SDE
Sbjct: 2 CGPASFQCNSST-CIPQLWACDNDPDC--EDGSDE 33
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
C P F C TCIP+ CD +P C +G DE
Sbjct: 2 CGPASFQCNS--STCIPQLWACDNDPDCEDGSDE 33
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
C H C + G+ C+CP L C + C+ TCSQ C YKC C
Sbjct: 39 CSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEE 95
Query: 201 GYELEPDMFTCK 212
G++L+P CK
Sbjct: 96 GFQLDPHTKACK 107
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 584 IYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNK 629
+Y G + + C NNG CSH+C + Y+C CP +L++ +
Sbjct: 21 LYFQGAMGTNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRR 65
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 98 HEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDC 141
+F C++ R C+ + LVC+G+ C +G DE C++ + + DC
Sbjct: 68 QDFQCKETGR-CLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDC 110
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 37 FTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
F C ET RC+ C+G DC D SDED C
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDC--LDGSDEDDC 100
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQD-RKCDE 34
C+ + C+GD+DC DGSDE + C+D R DE
Sbjct: 78 CLKRHLVCNGDQDCLDGSDE--DDCEDVRAIDE 108
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
C H C + G+ C+CP L C + C+ TCSQ C YKC C
Sbjct: 12 CSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEE 68
Query: 201 GYELEPDMFTCK 212
G++L+P CK
Sbjct: 69 GFQLDPHTKACK 80
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1)
Receptor Ldla Module
Length = 43
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 28 QDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
QD KC +F C +C+P C+G DCG + +DED+C
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCG--NQADEDNC 42
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
I CE F C + CI LVCDG C N DE
Sbjct: 48 IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 86
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
C+ HE +C+ + CI L CDGE C +G DE
Sbjct: 54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI CDG++DC+DGSDE E C
Sbjct: 68 CIHDLLFCDGEKDCRDGSDEDPETC 92
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 32 CDESHFTCNETL-RCIPLAWACDGQPDCGLNDTSDEDHC 69
C F+C + RCIP W CDGQ DC ++ SDE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDC--DNGSDEQGC 43
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C+ +F C + CIP+ CDG+ C NG DE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI +W+CDG DC +GSDE
Sbjct: 21 CIPQFWRCDGQVDCDNGSDE 40
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
C + C + G+ C+CP L C + C+ TCSQ C YKC C
Sbjct: 39 CSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLC--VNLEGGYKCQCEE 95
Query: 201 GYELEPDMFTCK 212
G++L+P CK
Sbjct: 96 GFQLDPHTKACK 107
>pdb|2AV7|A Chain A, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The K66a Mutation In The Heavy
Chain.
pdb|2AV7|D Chain D, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The K66a Mutation In The Heavy
Chain.
pdb|2J8U|A Chain A, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation.
pdb|2J8U|H Chain H, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
Length = 275
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R+V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRAVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|2JCC|A Chain A, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2JCC|H Chain H, Ah3 Recognition Of Mutant Hla-A2 W167a
Length = 275
Score = 33.9 bits (76), Expect = 0.40, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1HLA|A Chain A, Structure Of The Human Class I Histocompatibility Antigen,
Hla-A2
pdb|3HLA|A Chain A, Human Class I Histocompatibility Antigen A2.1
Length = 270
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1AKJ|A Chain A, Complex Of The Human Mhc Class I Glycoprotein Hla-A2 And
The T Cell Coreceptor Cd8
pdb|1OGA|A Chain A, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition.
pdb|1P7Q|A Chain A, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
Viral Mhc Receptor
pdb|2BNQ|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2C7U|A Chain A, Conflicting Selective Forces Affect Cd8 T-Cell Receptor
Contact Sites In An Hla-A2 Immunodominant Hiv Epitope.
pdb|2C7U|D Chain D, Conflicting Selective Forces Affect Cd8 T-Cell Receptor
Contact Sites In An Hla-A2 Immunodominant Hiv Epitope.
pdb|2P5E|A Chain A, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
pdb|2P5W|A Chain A, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
pdb|2PYE|A Chain A, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
pdb|2V2W|A Chain A, T Cell Cross-Reactivity And Conformational Changes During
Tcr Engagement
pdb|2V2W|D Chain D, T Cell Cross-Reactivity And Conformational Changes During
Tcr Engagement
pdb|2V2X|A Chain A, T Cell Cross-Reactivity And Conformational Changes During
Tcr Engagement.
pdb|2V2X|D Chain D, T Cell Cross-Reactivity And Conformational Changes During
Tcr Engagement.
pdb|2VLJ|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLL|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLL|D Chain D, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|A Chain A, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|F Chain F, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|3GJF|A Chain A, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJF|D Chain D, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|A Chain A, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|D Chain D, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|J Chain J, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|P Chain P, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HG1|A Chain A, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
pdb|3O4L|A Chain A, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
pdb|3UTQ|A Chain A, Human Hla-A0201-Alwgpdpaaa
pdb|3UTS|A Chain A, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|F Chain F, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|4GKN|A Chain A, A2-Mhc Complex Carrying Fatgigiitv
pdb|4GKN|D Chain D, A2-Mhc Complex Carrying Fatgigiitv
pdb|4GKS|A Chain A, A2-Mhc Complex Carrying Fltgigiitv
pdb|4GKS|D Chain D, A2-Mhc Complex Carrying Fltgigiitv
pdb|4I4W|A Chain A, Peptide Length Determines The Outcome Of T Cell
ReceptorPEPTIDE-Mhci Engagement
Length = 276
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3MRB|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcmv Pp65-495-503 Nonapeptide A7h Variant
pdb|3MRC|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcmv Pp65-495-503 Nonapeptide V6c Variant
pdb|3MRD|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcmv Pp65-495-503 Nonapeptide V6g Variant
Length = 276
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3OXR|A Chain A, Crystal Structure Of Hla A02:06 Bound To Hbv Core 18-27
Length = 275
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3GSN|H Chain H, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
pdb|3GSO|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv Peptide
pdb|3GSQ|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-M5s Peptide Variant
pdb|3GSR|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-M5v Peptide Variant
pdb|3GSW|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-T8a Peptide Variant
pdb|3GSX|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-T8v Peptide Variant
Length = 274
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3FT2|A Chain A, Crystal Structure Of A Citrulline Peptide Variant Of The
Minor Histocompatibility Peptide Ha-1 In Complex With
Hla- A2
pdb|3FT3|A Chain A, Crystal Structure Of The Minor Histocompatibility Peptide
Ha-1his In Complex With Hla-A2
pdb|3FT4|A Chain A, Crystal Structure Of The Minor Histocompatibility Peptide
Ha-1arg In Complex With Hla-A2
pdb|3GSU|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-M5t Peptide Variant
pdb|3GSV|A Chain A, Crystal Structure Of The Binary Complex Between Hla-A2 And
Hcmv Nlv-M5q Peptide Variant
Length = 275
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1QSF|A Chain A, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
Length = 274
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1QRN|A Chain A, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
pdb|1QSE|A Chain A, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
pdb|1S9W|A Chain A, Crystal Structure Analysis Of Ny-eso-1 Epitope, Sllmwitqc,
In Complex With Hla-a2
pdb|1S9X|A Chain A, Crystal Structure Analysis Of Ny-Eso-1 Epitope Analogue,
Sllmwitqa, In Complex With Hla-A2
pdb|1S9Y|A Chain A, Crystal Structure Analysis Of Ny-Eso-1 Epitope Analogue,
Sllmwitqs, In Complex With Hla-A2
pdb|2F54|A Chain A, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|F Chain F, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|3BGM|A Chain A, Crystal Structure Of Pkd2 Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3BH8|A Chain A, Crystal Structure Of Rqa_m Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3BHB|A Chain A, Crystal Structure Of Kmd Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3D25|A Chain A, Crystal Structure Of Ha-1 Minor Histocompatibility Antigen
Bound To Human Class I Mhc Hla-A2
Length = 274
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1HHG|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHG|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHH|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHI|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHI|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHJ|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHJ|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHK|A Chain A, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|1HHK|D Chain D, The Antigenic Identity Of Peptide(Slash)mhc Complexes: A
Comparison Of The Conformation Of Five Peptides
Presented By Hla-A2
pdb|2CLR|A Chain A, Three Dimensional Structure Of A Peptide Extending Out One
End Of A Class I Mhc Binding Site
pdb|2CLR|D Chain D, Three Dimensional Structure Of A Peptide Extending Out One
End Of A Class I Mhc Binding Site
pdb|1AO7|A Chain A, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
pdb|1BD2|A Chain A, Complex Between Human T-Cell Receptor B7, Viral Peptide
(Tax) And Mhc Class I Molecule Hla-A 0201
pdb|1B0G|A Chain A, Class I Histocompatibility Antigen (Hla-A2.1)BETA 2-
MicroglobulinPEPTIDE P1049 COMPLEX
pdb|1B0G|D Chain D, Class I Histocompatibility Antigen (Hla-A2.1)BETA 2-
MicroglobulinPEPTIDE P1049 COMPLEX
pdb|1B0R|A Chain A, Crystal Structure Of Hla-A0201 Complexed With A Peptide
With The Carboxyl-Terminal Group Substituted By A Methyl
Group
pdb|1QR1|A Chain A, Poor Binding Of A Her-2NEU EPITOPE (GP2) TO HLA-A2.1 Is
Due To A Lack Of Interactions In The Center Of The
Peptide
pdb|1QR1|D Chain D, Poor Binding Of A Her-2NEU EPITOPE (GP2) TO HLA-A2.1 Is
Due To A Lack Of Interactions In The Center Of The
Peptide
pdb|1I1Y|A Chain A, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1Y|D Chain D, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1F|A Chain A, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1I1F|D Chain D, Crystal Structure Of Human Class I Mhc (Hla-A2.1)
Complexed With Beta 2-Microglobulin And Hiv-Rt Variant
Peptide I1y
pdb|1DUY|A Chain A, Crystal Structure Of Hla-A0201OCTAMERIC TAX PEPTIDE
Complex
pdb|1DUY|D Chain D, Crystal Structure Of Hla-A0201OCTAMERIC TAX PEPTIDE
Complex
pdb|1DUZ|A Chain A, Human Class I Histocompatibility Antigen (Hla-A 0201) In
Complex With A Nonameric Peptide From Htlv-1 Tax Protein
pdb|1DUZ|D Chain D, Human Class I Histocompatibility Antigen (Hla-A 0201) In
Complex With A Nonameric Peptide From Htlv-1 Tax Protein
pdb|1IM3|A Chain A, Crystal Structure Of The Human Cytomegalovirus Protein Us2
Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|E Chain E, Crystal Structure Of The Human Cytomegalovirus Protein Us2
Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|I Chain I, Crystal Structure Of The Human Cytomegalovirus Protein Us2
Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1IM3|M Chain M, Crystal Structure Of The Human Cytomegalovirus Protein Us2
Bound To The Mhc Class I Molecule Hla-A2TAX
pdb|1I4F|A Chain A, Crystal Structure Of Hla-A0201MAGE-A4-Peptide Complex
pdb|1JF1|A Chain A, Crystal Structure Of Hla-A20201 In Complex With A
Decameric Altered Peptide Ligand From The Mart-1MELAN-A
pdb|1JHT|A Chain A, Crystal Structure Of Hla-A20201 In Complex With A
Nonameric Altered Peptide Ligand (Algigiltv) From The
Mart- 1MELAN-A.
pdb|1I7R|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1058
pdb|1I7R|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1058
pdb|1I7T|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-5v
pdb|1I7T|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-5v
pdb|1I7U|A Chain A, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-6v
pdb|1I7U|D Chain D, Crystal Structure Of Class I Mhc A2 In Complex With
Peptide P1049-6v
pdb|1EEY|A Chain A, Crystal Structure Determination Of Hla A2 Complexed To
Peptide Gp2 With The Substitution (I2lV5LL9V)
pdb|1EEY|D Chain D, Crystal Structure Determination Of Hla A2 Complexed To
Peptide Gp2 With The Substitution (I2lV5LL9V)
pdb|1EEZ|A Chain A, Crystal Structure Determination Of Hla-A2.1 Complexed To
Gp2 Peptide Variant(I2lV5L)
pdb|1EEZ|D Chain D, Crystal Structure Determination Of Hla-A2.1 Complexed To
Gp2 Peptide Variant(I2lV5L)
pdb|1LP9|A Chain A, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|1LP9|H Chain H, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|1QEW|A Chain A, Human Class I Histocompatibility Antigen (Hla-A 0201)
Complex With A Nonameric Peptide From
Melanoma-Associated Antigen 3 (Residues 271-279)
pdb|1TVB|A Chain A, Crystal Structure Of Melanoma Antigen Gp100(209-217) Bound
To Human Class I Mhc Hla-A2
pdb|1TVB|D Chain D, Crystal Structure Of Melanoma Antigen Gp100(209-217) Bound
To Human Class I Mhc Hla-A2
pdb|1TVH|A Chain A, Crystal Structure Of Modified Melanoma Antigen
Gp100(209-T2m) Bound To Human Class I Mhc Hla-A2
pdb|1TVH|D Chain D, Crystal Structure Of Modified Melanoma Antigen
Gp100(209-T2m) Bound To Human Class I Mhc Hla-A2
pdb|1S8D|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-3a
pdb|1T1W|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-3f6i8v
pdb|1T1X|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-4l
pdb|1T1Y|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-5v
pdb|1T1Z|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-6a
pdb|1T20|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9-6i
pdb|1T21|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9,
Monoclinic Crystal
pdb|1T22|A Chain A, Structural Basis For Degenerate Recognition Of Hiv Peptide
Variants By Cytotoxic Lymphocyte, Variant Sl9,
Orthorhombic Crystal
pdb|2F53|A Chain A, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
pdb|2GIT|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Modified
Htlv-1 Tax (Y5k- 4-[3-Indolyl]-Butyric Acid) Peptide
pdb|2GIT|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Modified
Htlv-1 Tax (Y5k- 4-[3-Indolyl]-Butyric Acid) Peptide
pdb|2GJ6|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|2GT9|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Decameric
Melan-AMART- 1(26-35) Peptide
pdb|2GT9|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Decameric
Melan-AMART- 1(26-35) Peptide
pdb|2GTW|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A27l Substitution
pdb|2GTW|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A27l Substitution
pdb|2GTZ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A28l Substitution
pdb|2GTZ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Nonameric
Melan-AMART- 1(27-35) Peptide Having A28l Substitution
pdb|2GUO|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Native
Nonameric Melan- AMART-1(27-35) Peptide
pdb|2GUO|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Native
Nonameric Melan- AMART-1(27-35) Peptide
pdb|3BH9|A Chain A, Crystal Structure Of Rty Phosphopeptide Bound To Human
Class I Mhc Hla-A2
pdb|3FQN|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQR|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQT|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQU|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQW|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3FQX|A Chain A, Phosphorylation Of Self-Peptides Alters Human Leukocyte
Antigen Class I-Restricted Antigen Presentation And
Generates Tumor Specific Epitopes
pdb|3D39|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
pdb|3GIV|A Chain A, Antigen Processing Influences Hiv-Specific Cytotoxic T
Lymphocyte Immunodominance
pdb|3GIV|D Chain D, Antigen Processing Influences Hiv-Specific Cytotoxic T
Lymphocyte Immunodominance
pdb|3H7B|A Chain A, Human Class I Mhc Hla-a2 In Complex With The Tel1p Peptide
pdb|3H7B|D Chain D, Human Class I Mhc Hla-a2 In Complex With The Tel1p Peptide
pdb|3H9S|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3KLA|A Chain A, Ca2+ Release From The Endoplasmic Reticulum Of Ny-Eso-1
Specific T Cells Is Modulated By The Affinity Of T Cell
Receptor And By The Use Of The Cd8 Co-Receptor
pdb|3KLA|D Chain D, Ca2+ Release From The Endoplasmic Reticulum Of Ny-Eso-1
Specific T Cells Is Modulated By The Affinity Of T Cell
Receptor And By The Use Of The Cd8 Co-Receptor
pdb|2X4N|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Residual Fragments Of A Photocleavable Peptide That Is
Cleaved Upon Uv-Light Treatment
pdb|2X4N|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Residual Fragments Of A Photocleavable Peptide That Is
Cleaved Upon Uv-Light Treatment
pdb|2X4O|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Envelope Peptide Env120-128
pdb|2X4O|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Envelope Peptide Env120-128
pdb|2X4P|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4P|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4Q|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4Q|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X4R|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Cytomegalovirus (Cmv) Pp65 Epitope
pdb|2X4R|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To
Cytomegalovirus (Cmv) Pp65 Epitope
pdb|2X4S|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peptide Representing The Epitope Of The H5n1 (Avian Flu)
Nucleoprotein
pdb|2X4S|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peptide Representing The Epitope Of The H5n1 (Avian Flu)
Nucleoprotein
pdb|2X4T|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peiodate-Cleavable Peptide
pdb|2X4T|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Peiodate-Cleavable Peptide
pdb|2X4U|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Peptide Rt468-476
pdb|2X4U|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To Hiv-1
Peptide Rt468-476
pdb|3MGO|A Chain A, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|D Chain D, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|G Chain G, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGO|J Chain J, Crystal Structure Of A H5-Specific Ctl Epitope Derived
From Influenza Virus In Complex With Hla-A0201
pdb|3MGT|A Chain A, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|D Chain D, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|G Chain G, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3MGT|J Chain J, Crystal Structure Of A H5-Specific Ctl Epitope Variant
Deriv H5n1 Influenza Virus In Complex With Hla-A0201
pdb|3I6G|A Chain A, Newly Identified Epitope Mn2 From Sars-Cov M Protein
Complexed Withhla-A0201
pdb|3I6G|D Chain D, Newly Identified Epitope Mn2 From Sars-Cov M Protein
Complexed Withhla-A0201
pdb|3I6K|A Chain A, Newly Identified Epitope From Sars-Cov Membrane Protein
Complexed With Hla-A0201
pdb|3I6K|E Chain E, Newly Identified Epitope From Sars-Cov Membrane Protein
Complexed With Hla-A0201
pdb|3HPJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) Peptide
pdb|3HPJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) Peptide
pdb|3MYJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) (R1y) Peptide Variant.
pdb|3MYJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Wt-1
(126-134) (R1y) Peptide Variant.
pdb|2X70|A Chain A, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|2X70|D Chain D, Crystal Structure Of Mhc Class I Hla-A2.1 Bound To A
Photocleavable Peptide
pdb|3O3A|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1
pdb|3O3A|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1
pdb|3O3B|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1.1
pdb|3O3B|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-1.1
pdb|3O3D|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2
pdb|3O3D|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2
pdb|3O3E|A Chain A, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2.1
pdb|3O3E|D Chain D, Human Class I Mhc Hla-A2 In Complex With The
Peptidomimetic Ela-2.1
pdb|3PWJ|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l,I9v)
Peptide Variant
pdb|3PWJ|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l,I9v)
Peptide Variant
pdb|3PWL|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud Peptide
pdb|3PWL|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud Peptide
pdb|3PWN|A Chain A, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l)
Peptide Variant
pdb|3PWN|D Chain D, Human Class I Mhc Hla-A2 In Complex With The Hud (G2l)
Peptide Variant
pdb|3PWP|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QDG|A Chain A, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|A Chain A, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
pdb|3QDM|A Chain A, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Decameric Peptide
pdb|3QEQ|A Chain A, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
pdb|3QFD|A Chain A, Human Class I Mhc Hla-A2 In Complex With Mart-1(27-35)
Nonameric Peptide
pdb|3QFD|D Chain D, Human Class I Mhc Hla-A2 In Complex With Mart-1(27-35)
Nonameric Peptide
pdb|3QFJ|A Chain A, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
pdb|3REW|A Chain A, Crystal Structure Of An Lmp2a-Derived Peptide Bound To
Human Class I Mhc Hla-A2
pdb|3REW|D Chain D, Crystal Structure Of An Lmp2a-Derived Peptide Bound To
Human Class I Mhc Hla-A2
pdb|3UTT|A Chain A, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|F Chain F, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3TO2|A Chain A, Structure Of Hla-A0201 Complexed With Peptide Md3-C9
Derived From A Clustering Region Of Restricted Cytotoxic
T Lymphocyte Epitope From Sars-Cov M Protein
pdb|4E5X|A Chain A, Crystal Structure Of A Complex Between The Human
Adenovirus Type 2 E3- 19k Protein And Mhc Class I
Molecule Hla-A2TAX
pdb|4E5X|D Chain D, Crystal Structure Of A Complex Between The Human
Adenovirus Type 2 E3- 19k Protein And Mhc Class I
Molecule Hla-A2TAX
pdb|3V5D|A Chain A, Hla-A2.1 Kvaelvhfl
pdb|3V5D|D Chain D, Hla-A2.1 Kvaelvhfl
pdb|3V5H|A Chain A, Hla-A2.1 Kvaeivhfl
pdb|3V5H|D Chain D, Hla-A2.1 Kvaeivhfl
pdb|3V5K|A Chain A, Hla2.1 Kvaelvwfl
pdb|3V5K|D Chain D, Hla2.1 Kvaelvwfl
Length = 275
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|2UWE|A Chain A, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
pdb|2UWE|H Chain H, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
Length = 275
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 28 QDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
+ + C S F+C T C+P W CDG DC D +DE
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADE 39
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
C+ W CDGD+DC DG+DE
Sbjct: 20 CVPERWLCDGDKDCADGADE 39
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3
From The Low Density Lipoprotein Receptor-Related
Protein (Lrp) . Evidence For Specific Binding To The
Receptor Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI WKCDGD DC D SDE C
Sbjct: 18 CIQERWKCDGDNDCLDNSDEAPALC 42
>pdb|2AV1|A Chain A, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The E63q And K66a Mutations In
The Heavy Chain.
pdb|2AV1|D Chain D, Crystal Structure Of Htlv-1 Tax Peptide Bound To Human
Class I Mhc Hla-A2 With The E63q And K66a Mutations In
The Heavy Chain
Length = 275
Score = 33.1 bits (74), Expect = 0.74, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ G+ R+V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGQTRAVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3H9H|A Chain A, Human Class I Mhc Hla-A2(A150p) In Complex With The Tel1p
Peptide
pdb|3H9H|D Chain D, Human Class I Mhc Hla-A2(A150p) In Complex With The Tel1p
Peptide
pdb|3IXA|A Chain A, Human Class I Mhc Hla-A2(A150p) In Complex With The Tax
Peptide
pdb|3IXA|D Chain D, Human Class I Mhc Hla-A2(A150p) In Complex With The Tax
Peptide
Length = 275
Score = 32.7 bits (73), Expect = 0.79, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAP 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CIPL W CDG DC D+SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDC--MDSSDEKSC 39
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI W+CDGD DC D SDE
Sbjct: 17 CIPLRWRCDGDTDCMDSSDE 36
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C HE C CIP + CDGE C +GEDE C
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 42 TLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
+ +CIP++W CDG+ DC + DE++C N
Sbjct: 14 STQCIPVSWRCDGENDC--DSGEDEENCGN 41
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128
CE +EF CQD CI VCDG C +G DE
Sbjct: 8 CERNEFQCQD--GKCISYKWVCDGSAECQDGSDE 39
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI W CDG +C+DGSDE E C
Sbjct: 20 CISYKWVCDGSAECQDGSDESQETC 44
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDH 68
+C+ + F C + +CI W CDG +C D SDE
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAEC--QDGSDESQ 41
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C HE C CIP + CDGE C +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 42 TLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
+ +CIP++W CDG+ DC + DE++C N
Sbjct: 12 STQCIPVSWRCDGENDC--DSGEDEENCGN 39
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPY 656
+C H C + G Y C C L +DN+TC+V S + R I D +PY
Sbjct: 133 SCDHYCHNYIGGYY-CSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPY 187
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 601 NCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPY 656
+C H C + G Y C C L +DN+TC+V S + R I D +PY
Sbjct: 133 SCDHYCHNYIGG-YYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPY 187
>pdb|3MR9|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcmv Pp65-495-503 Nonapeptide M5a Variant
pdb|3MRE|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Ebv Bmlf1-280-288 Nonapeptide
pdb|3MRF|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Ebv Bmlf1-280-288 Nonapeptide T4p Variant
pdb|3MRG|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1073-1081 Nonapeptide
pdb|3MRH|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1073-1081 Nonapeptide N3s Variant
pdb|3MRI|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1073-1081 Nonapeptide G4m-V5w Variant
pdb|3MRJ|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1073-1081 Nonapeptide V5m Variant
pdb|3MRK|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Afp137 Nonapeptide
pdb|3MRL|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1073-1081 Nonapeptide C6v Variant
pdb|3MRM|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns3-1406-1415 Decapeptide
pdb|3MRN|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Hcv Ns4b-1807-1816 Decapeptide
pdb|3MRO|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Melan- A Mart1 Decapeptide Variant
pdb|3MRP|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Melan- A Mart1 Decapeptide Variant
pdb|3MRQ|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Melan- A Mart1 Decapeptide Variant
pdb|3MRR|A Chain A, Crystal Structure Of Mhc Class I Hla-A2 Molecule Complexed
With Human Prostaglandin Transporter Decapeptide
Length = 293
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 28/122 (22%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
D H YDGKD+ IAL E+ WT + +KW +
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKWEAA 150
Query: 571 DV 572
V
Sbjct: 151 HV 152
>pdb|3OX8|A Chain A, Crystal Structure Of Hla A02:03 Bound To Hbv Core 18-27
pdb|3OX8|D Chain D, Crystal Structure Of Hla A02:03 Bound To Hbv Core 18-27
Length = 275
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 28/117 (23%)
Query: 464 DSKAPRIERCS---MSGEHRSVIV-----RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
+ +AP IE+ GE R V RVDL T RG + + + R+Y D S
Sbjct: 46 EPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGS 105
Query: 516 D-----SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKW 567
D H YDGKD+ IAL E+ WT + +KW
Sbjct: 106 DWRFLRGYHQYAYDGKDY---------------IALKEDLRSWTAADMAAQTTKHKW 147
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 14 EDCKDGSDELAEHCQDRKCDES----HFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
E C E+ + +R C F C +T RC+ C+G DCG D SDE +C
Sbjct: 44 EPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCG--DQSDEANC 101
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA 634
C + NG C C G + C C +L D K+C+ A
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA 127
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By
Its Receptors
Length = 44
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
++C++ F C RCIP W CD DC D SDED C
Sbjct: 6 KECEKDQFQCR-NERCIPSVWRCDEDDDCL--DHSDEDDC 42
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5,
Calcium-Coordinating
Length = 37
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI + W+CDG DCKD SDE
Sbjct: 14 CIHSSWRCDGGPDCKDKSDE 33
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 44 RCIPLAWACDGQPDCGLNDTSDEDHCV 70
CI +W CDG PDC D SDE++C
Sbjct: 13 ECIHSSWRCDGGPDC--KDKSDEENCA 37
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA 634
C + NG C C G + C C +L D K+C+ A
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPA 127
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 95 CEPHEFDCQD---VLRTCIPKALVCDGEPACFNGEDEMFC 131
C P +F C + C P+ +CDG P C +G DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 31 KCDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDE 66
+C F C+E C P W CDG PDC +D DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDC--DDGRDE 41
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 94 ACEPHEFDCQD---VLRTCIPKALVCDGEPACFNGEDEMFC 131
+C P +F C + C P+ +CDG P C +G DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 142 HHDCYNTPEGFMCVCPRDMYLQP----DLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCT 197
H C NT + C CP L D CS +PC GTC ++CT
Sbjct: 16 HGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-GNGTCKN------VIGGFECT 68
Query: 198 CHAGYELEPDMFTCK 212
C G+E P M TC+
Sbjct: 69 CEEGFEPGP-MMTCE 82
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat
Of Human Megalin
Length = 52
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 13/20 (65%)
Query: 3 CIIAYWKCDGDEDCKDGSDE 22
CI W CD D DC DGSDE
Sbjct: 19 CISKNWVCDTDNDCGDGSDE 38
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 90 ISAPACEPHEFDCQDVLR----TCIPKALVCDGEPACFNGEDEMFC 131
I + C+ E DC++ R CI + L C+GE C + DE C
Sbjct: 107 IPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDC 152
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
CE+ G C + + G++KCQCP M L + + C
Sbjct: 110 CEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 36/102 (35%)
Query: 144 DCYNTPEGFMCVCPRDMYLQPDLITC-------------------------------SYL 172
+C NTP ++C CP D L P + C S
Sbjct: 16 NCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKA 75
Query: 173 HPC----EAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFT 210
C +AWGT + C P+V+ + YK C G P+ T
Sbjct: 76 SCCCSLGKAWGTPCEXC-PAVNTSEYKILCPGGEGFRPNPIT 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,775,401
Number of Sequences: 62578
Number of extensions: 1167520
Number of successful extensions: 3558
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 2842
Number of HSP's gapped (non-prelim): 377
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)