Query psy14257
Match_columns 841
No_of_seqs 462 out of 4042
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:24:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 9.1E-57 2E-61 488.3 32.3 386 112-623 807-1286(1289)
2 KOG1215|consensus 100.0 1.1E-54 2.5E-59 532.4 49.4 641 1-832 150-868 (877)
3 KOG1215|consensus 100.0 2.2E-33 4.7E-38 344.7 37.7 452 299-832 1-565 (877)
4 KOG1214|consensus 100.0 3.5E-33 7.6E-38 304.9 31.9 248 413-840 991-1245(1289)
5 PLN02919 haloacid dehalogenase 99.9 2.4E-19 5.3E-24 220.6 32.4 269 291-571 562-892 (1057)
6 PLN02919 haloacid dehalogenase 99.8 9.8E-18 2.1E-22 206.5 38.6 225 344-570 563-836 (1057)
7 PF08450 SGL: SMP-30/Gluconola 99.7 4.7E-16 1E-20 163.1 24.9 229 252-555 3-244 (246)
8 PF08450 SGL: SMP-30/Gluconola 99.7 6E-16 1.3E-20 162.3 23.9 204 350-576 1-221 (246)
9 PF10282 Lactonase: Lactonase, 99.5 1.6E-10 3.6E-15 127.2 34.0 288 273-570 13-327 (345)
10 PRK11028 6-phosphogluconolacto 99.5 3.3E-10 7.1E-15 124.4 36.1 290 413-823 2-306 (330)
11 PRK11028 6-phosphogluconolacto 99.4 1.2E-10 2.6E-15 127.8 32.0 284 265-570 4-309 (330)
12 PF10282 Lactonase: Lactonase, 99.4 1E-09 2.2E-14 121.0 38.9 279 423-822 13-323 (345)
13 COG3386 Gluconolactonase [Carb 99.4 1.6E-11 3.4E-16 130.6 21.3 214 342-576 18-251 (307)
14 COG3386 Gluconolactonase [Carb 99.4 1.7E-10 3.8E-15 122.7 26.4 238 251-559 27-278 (307)
15 TIGR02604 Piru_Ver_Nterm putat 99.3 5.6E-10 1.2E-14 123.9 26.1 267 241-561 4-344 (367)
16 COG3391 Uncharacterized conser 99.2 7E-09 1.5E-13 115.5 27.7 252 298-573 32-289 (381)
17 COG2706 3-carboxymuconate cycl 99.2 3.2E-08 6.9E-13 102.8 30.0 294 265-570 5-326 (346)
18 KOG4659|consensus 99.2 9.6E-09 2.1E-13 119.7 28.7 225 296-568 364-623 (1899)
19 COG3391 Uncharacterized conser 99.2 1.6E-08 3.5E-13 112.6 29.1 268 250-546 32-306 (381)
20 KOG4659|consensus 99.1 8.1E-09 1.7E-13 120.3 24.9 338 445-829 316-704 (1899)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.6E-07 7.7E-12 98.1 36.4 290 413-798 1-300 (300)
22 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.8E-07 3.8E-12 101.1 32.5 277 265-575 15-338 (352)
23 TIGR02604 Piru_Ver_Nterm putat 99.1 3.8E-08 8.3E-13 109.3 28.0 124 431-565 58-211 (367)
24 COG2706 3-carboxymuconate cycl 99.1 5.3E-07 1.2E-11 93.8 32.7 302 457-823 4-323 (346)
25 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.7E-07 8.1E-12 98.0 32.5 281 229-546 11-298 (300)
26 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.7E-06 3.6E-11 93.7 36.0 287 456-830 13-337 (352)
27 PF07995 GSDH: Glucose / Sorbo 98.9 3.7E-08 7.9E-13 107.5 18.0 262 248-563 1-331 (331)
28 PF07995 GSDH: Glucose / Sorbo 98.9 9.3E-07 2E-11 96.5 26.3 283 443-817 1-331 (331)
29 PF06977 SdiA-regulated: SdiA- 98.8 5.2E-07 1.1E-11 93.0 21.5 211 248-521 21-247 (248)
30 PF06977 SdiA-regulated: SdiA- 98.8 9.8E-07 2.1E-11 91.0 21.4 201 349-563 22-246 (248)
31 PF14670 FXa_inhibition: Coagu 98.7 4.1E-09 8.8E-14 72.8 2.0 36 595-631 1-36 (36)
32 KOG1520|consensus 98.7 1.4E-06 3E-11 92.3 21.7 191 265-512 78-282 (376)
33 PF00057 Ldl_recept_a: Low-den 98.7 4.8E-09 1E-13 73.4 1.8 36 31-69 2-37 (37)
34 cd00112 LDLa Low Density Lipop 98.7 9.5E-09 2.1E-13 71.2 1.9 35 32-69 1-35 (35)
35 PF00058 Ldl_recept_b: Low-den 98.6 6.9E-08 1.5E-12 70.2 5.7 41 413-453 1-42 (42)
36 COG4257 Vgb Streptogramin lyas 98.6 3.5E-06 7.5E-11 84.5 19.3 243 298-569 63-307 (353)
37 PF00058 Ldl_recept_b: Low-den 98.6 9.9E-08 2.2E-12 69.4 6.2 41 681-747 1-42 (42)
38 COG4257 Vgb Streptogramin lyas 98.6 9.9E-06 2.1E-10 81.3 21.2 257 229-564 83-344 (353)
39 PF14670 FXa_inhibition: Coagu 98.5 3.9E-08 8.4E-13 68.0 2.0 36 134-169 1-36 (36)
40 KOG4499|consensus 98.5 5E-06 1.1E-10 81.4 16.8 207 352-576 18-250 (310)
41 KOG1520|consensus 98.5 2.1E-06 4.6E-11 91.0 14.9 151 347-555 113-282 (376)
42 PF03022 MRJP: Major royal jel 98.4 2.6E-05 5.6E-10 83.1 21.8 190 352-556 4-254 (287)
43 PF02239 Cytochrom_D1: Cytochr 98.4 0.00032 7E-09 77.6 29.8 325 228-584 15-362 (369)
44 TIGR03606 non_repeat_PQQ dehyd 98.4 0.0002 4.3E-09 80.1 27.3 200 239-465 20-250 (454)
45 KOG4260|consensus 98.4 8.1E-07 1.8E-11 87.9 6.9 131 52-204 152-305 (350)
46 PRK04043 tolB translocation pr 98.3 0.00033 7.2E-09 79.0 27.5 246 264-541 157-417 (419)
47 smart00135 LY Low-density lipo 98.3 2.1E-06 4.5E-11 63.0 6.1 36 788-825 8-43 (43)
48 PF02239 Cytochrom_D1: Cytochr 98.3 0.0027 5.8E-08 70.4 33.1 326 413-820 6-346 (369)
49 smart00192 LDLa Low-density li 98.2 6.3E-07 1.4E-11 61.3 2.5 32 32-66 2-33 (33)
50 PF00057 Ldl_recept_a: Low-den 98.2 8.6E-07 1.9E-11 62.1 2.2 37 93-131 1-37 (37)
51 KOG1219|consensus 98.2 1.7E-06 3.7E-11 105.8 5.9 97 100-214 3870-3979(4289)
52 PF03022 MRJP: Major royal jel 98.1 0.0012 2.7E-08 70.3 25.8 221 497-809 4-255 (287)
53 KOG4499|consensus 98.1 0.00037 8E-09 68.6 19.5 91 439-532 153-250 (310)
54 smart00135 LY Low-density lipo 98.1 5.3E-06 1.2E-10 60.8 5.4 40 732-773 3-42 (43)
55 PF12662 cEGF: Complement Clr- 98.1 1.7E-06 3.7E-11 53.5 2.1 24 151-174 1-24 (24)
56 PRK04792 tolB translocation pr 98.1 0.00061 1.3E-08 77.9 24.7 227 328-575 198-432 (448)
57 PRK04792 tolB translocation pr 98.1 0.001 2.3E-08 76.0 26.6 230 274-533 199-434 (448)
58 PF03088 Str_synth: Strictosid 98.1 1.5E-05 3.3E-10 67.9 8.5 73 447-525 1-88 (89)
59 cd00112 LDLa Low Density Lipop 98.1 1.8E-06 3.9E-11 59.9 2.1 35 95-131 1-35 (35)
60 TIGR03606 non_repeat_PQQ dehyd 98.0 0.00025 5.3E-09 79.4 18.2 166 343-516 24-251 (454)
61 PRK04043 tolB translocation pr 98.0 0.0019 4E-08 73.0 25.5 217 327-566 168-399 (419)
62 COG2133 Glucose/sorbosone dehy 98.0 0.0014 3E-08 71.7 23.2 143 423-567 219-397 (399)
63 PRK05137 tolB translocation pr 98.0 0.0023 4.9E-08 73.1 26.2 229 274-532 183-420 (435)
64 COG3204 Uncharacterized protei 97.9 0.00098 2.1E-08 68.4 19.1 195 351-557 88-303 (316)
65 PRK05137 tolB translocation pr 97.9 0.004 8.6E-08 71.1 26.0 221 327-569 181-414 (435)
66 PRK04922 tolB translocation pr 97.9 0.004 8.6E-08 71.1 25.7 102 424-533 317-420 (433)
67 TIGR03118 PEPCTERM_chp_1 conse 97.9 0.0038 8.2E-08 64.6 22.3 231 342-582 16-294 (336)
68 PF12999 PRKCSH-like: Glucosid 97.9 7.6E-06 1.6E-10 78.0 2.6 57 4-66 48-110 (176)
69 PRK04922 tolB translocation pr 97.9 0.0029 6.4E-08 72.1 24.3 219 328-566 184-410 (433)
70 PRK00178 tolB translocation pr 97.8 0.0074 1.6E-07 68.8 27.3 229 274-532 180-414 (430)
71 TIGR02800 propeller_TolB tol-p 97.8 0.0042 9.2E-08 70.4 25.2 227 327-573 169-402 (417)
72 PRK01029 tolB translocation pr 97.8 0.011 2.3E-07 67.2 27.9 227 327-573 164-409 (428)
73 PRK02889 tolB translocation pr 97.8 0.0033 7.2E-08 71.5 23.9 230 229-484 176-411 (427)
74 PRK02889 tolB translocation pr 97.8 0.0061 1.3E-07 69.3 26.0 207 301-533 200-412 (427)
75 PRK03629 tolB translocation pr 97.8 0.0054 1.2E-07 69.8 25.4 228 327-575 178-413 (429)
76 PRK03629 tolB translocation pr 97.8 0.011 2.5E-07 67.1 27.8 230 274-533 180-415 (429)
77 PF03088 Str_synth: Strictosid 97.8 0.00013 2.9E-09 62.2 8.8 74 741-823 1-89 (89)
78 PRK02888 nitrous-oxide reducta 97.8 0.0049 1.1E-07 70.6 23.8 208 358-567 139-404 (635)
79 KOG4260|consensus 97.8 4.5E-05 9.8E-10 75.8 6.0 100 101-205 151-270 (350)
80 PRK00178 tolB translocation pr 97.7 0.0054 1.2E-07 70.0 23.9 227 231-483 181-413 (430)
81 KOG1219|consensus 97.7 5E-05 1.1E-09 93.7 7.1 59 101-170 3910-3977(4289)
82 COG2133 Glucose/sorbosone dehy 97.7 0.011 2.3E-07 64.9 24.3 137 665-822 235-398 (399)
83 COG4946 Uncharacterized protei 97.7 0.12 2.7E-06 56.1 38.4 111 666-810 399-510 (668)
84 PF07645 EGF_CA: Calcium-bindi 97.7 2.3E-05 5E-10 57.0 2.1 38 132-169 3-42 (42)
85 TIGR02800 propeller_TolB tol-p 97.7 0.019 4.1E-07 65.1 26.9 100 424-531 303-404 (417)
86 PRK01029 tolB translocation pr 97.6 0.034 7.4E-07 63.1 28.4 234 274-534 166-413 (428)
87 COG3204 Uncharacterized protei 97.6 0.0092 2E-07 61.4 20.7 208 298-523 87-311 (316)
88 cd00200 WD40 WD40 domain, foun 97.6 0.11 2.5E-06 53.8 30.9 212 327-561 72-285 (289)
89 TIGR03118 PEPCTERM_chp_1 conse 97.6 0.016 3.5E-07 60.1 22.4 219 291-533 17-289 (336)
90 TIGR03032 conserved hypothetic 97.6 0.011 2.4E-07 61.7 21.3 215 327-557 27-261 (335)
91 smart00192 LDLa Low-density li 97.6 4.5E-05 9.7E-10 52.2 2.6 32 95-128 2-33 (33)
92 PF12999 PRKCSH-like: Glucosid 97.5 6.4E-05 1.4E-09 71.8 3.6 70 33-128 34-110 (176)
93 PF07645 EGF_CA: Calcium-bindi 97.4 0.00021 4.6E-09 52.0 4.2 39 171-211 1-42 (42)
94 PF06433 Me-amine-dh_H: Methyl 97.4 0.054 1.2E-06 57.9 23.1 256 301-576 40-329 (342)
95 PRK01742 tolB translocation pr 97.3 0.051 1.1E-06 61.9 23.8 205 327-556 183-391 (429)
96 COG4946 Uncharacterized protei 97.2 0.52 1.1E-05 51.5 37.2 355 360-834 106-490 (668)
97 PF05096 Glu_cyclase_2: Glutam 97.1 0.19 4.1E-06 52.0 23.5 209 494-769 45-260 (264)
98 cd00200 WD40 WD40 domain, foun 97.1 0.48 1E-05 49.0 32.8 145 415-570 23-168 (289)
99 PRK01742 tolB translocation pr 97.1 0.097 2.1E-06 59.6 23.3 225 229-484 184-412 (429)
100 PF12662 cEGF: Complement Clr- 97.0 0.00038 8.2E-09 43.2 1.8 23 193-215 1-23 (24)
101 PF01436 NHL: NHL repeat; Int 97.0 0.0013 2.8E-08 43.1 4.4 28 348-376 1-28 (28)
102 PF01436 NHL: NHL repeat; Int 97.0 0.0016 3.4E-08 42.7 4.7 28 493-521 1-28 (28)
103 PF02333 Phytase: Phytase; In 97.0 0.19 4.2E-06 54.9 23.1 120 441-566 153-289 (381)
104 PF06433 Me-amine-dh_H: Methyl 96.9 0.9 1.9E-05 48.8 27.8 300 456-830 3-340 (342)
105 PRK02888 nitrous-oxide reducta 96.8 0.11 2.5E-06 59.8 20.7 234 264-525 143-405 (635)
106 KOG4289|consensus 96.8 0.006 1.3E-07 73.4 10.1 86 113-213 1221-1317(2531)
107 COG5276 Uncharacterized conser 96.7 0.48 1E-05 49.0 21.9 233 298-564 84-326 (370)
108 KOG3509|consensus 96.5 0.0077 1.7E-07 72.2 9.0 110 1-131 1-110 (964)
109 PF05096 Glu_cyclase_2: Glutam 96.5 0.68 1.5E-05 48.0 21.5 151 413-576 56-212 (264)
110 PF13360 PQQ_2: PQQ-like domai 96.0 2.2 4.7E-05 43.8 23.8 184 359-572 35-235 (238)
111 PF02333 Phytase: Phytase; In 96.0 1.6 3.4E-05 48.0 22.6 79 444-526 208-292 (381)
112 PF12947 EGF_3: EGF domain; I 96.0 0.0033 7.1E-08 43.7 1.3 34 134-169 1-36 (36)
113 COG3823 Glutamine cyclotransfe 95.9 0.69 1.5E-05 45.5 17.0 202 496-770 48-259 (262)
114 cd01475 vWA_Matrilin VWA_Matri 95.5 0.0091 2E-07 61.5 3.0 36 132-167 188-223 (224)
115 cd01475 vWA_Matrilin VWA_Matri 95.4 0.012 2.5E-07 60.7 3.2 43 165-209 180-223 (224)
116 smart00179 EGF_CA Calcium-bind 95.2 0.019 4.2E-07 40.6 2.9 28 139-169 9-38 (39)
117 PF13449 Phytase-like: Esteras 94.8 2.8 6.2E-05 45.7 20.1 177 296-478 19-253 (326)
118 COG0823 TolB Periplasmic compo 94.6 2.6 5.6E-05 47.7 19.5 172 346-534 144-324 (425)
119 TIGR03032 conserved hypothetic 94.6 1.6 3.4E-05 46.1 16.2 38 538-575 202-239 (335)
120 KOG1446|consensus 94.6 6.8 0.00015 41.1 27.1 231 328-576 36-271 (311)
121 KOG0315|consensus 94.5 0.52 1.1E-05 47.4 11.8 131 634-803 50-182 (311)
122 PF05787 DUF839: Bacterial pro 94.3 3.1 6.7E-05 48.3 19.4 153 293-462 240-453 (524)
123 PF13449 Phytase-like: Esteras 94.0 2 4.4E-05 46.8 16.7 66 445-513 86-166 (326)
124 KOG1225|consensus 94.0 0.19 4.1E-06 57.1 8.6 61 121-204 299-363 (525)
125 PF01731 Arylesterase: Arylest 93.9 0.14 2.9E-06 43.6 5.5 33 491-523 51-83 (86)
126 smart00181 EGF Epidermal growt 93.9 0.053 1.1E-06 37.4 2.6 24 139-162 6-30 (35)
127 COG3823 Glutamine cyclotransfe 93.6 2.1 4.6E-05 42.2 13.7 69 407-477 180-260 (262)
128 smart00179 EGF_CA Calcium-bind 93.5 0.071 1.5E-06 37.6 2.8 30 172-203 2-33 (39)
129 PF05787 DUF839: Bacterial pro 93.5 0.74 1.6E-05 53.4 12.6 77 293-370 346-457 (524)
130 KOG1217|consensus 93.5 0.34 7.4E-06 55.7 10.1 62 143-207 243-306 (487)
131 PF14583 Pectate_lyase22: Olig 93.5 10 0.00022 41.7 20.3 214 329-558 61-303 (386)
132 KOG0289|consensus 93.4 14 0.00031 40.4 22.5 197 351-565 306-503 (506)
133 PF00930 DPPIV_N: Dipeptidyl p 93.2 16 0.00034 40.3 23.5 94 446-548 237-337 (353)
134 KOG1225|consensus 93.1 0.31 6.6E-06 55.5 8.4 67 121-205 268-338 (525)
135 PF01731 Arylesterase: Arylest 93.0 0.17 3.7E-06 43.0 4.8 37 343-379 48-84 (86)
136 COG0823 TolB Periplasmic compo 93.0 18 0.00039 40.9 22.4 144 328-485 173-323 (425)
137 KOG0285|consensus 92.7 16 0.00035 39.0 20.3 242 251-575 154-397 (460)
138 PRK13616 lipoprotein LpqB; Pro 91.6 19 0.00041 42.6 21.0 194 347-565 348-565 (591)
139 KOG2397|consensus 91.5 0.18 3.9E-06 55.5 3.9 53 10-68 60-115 (480)
140 PF13360 PQQ_2: PQQ-like domai 90.9 20 0.00044 36.5 20.7 146 413-570 37-194 (238)
141 KOG0286|consensus 90.9 23 0.00049 37.0 24.7 236 324-576 73-312 (343)
142 PTZ00421 coronin; Provisional 90.7 38 0.00082 39.2 28.8 74 499-576 265-339 (493)
143 COG4247 Phy 3-phytase (myo-ino 90.7 8 0.00017 39.4 14.1 147 365-524 71-234 (364)
144 KOG4289|consensus 90.6 0.24 5.3E-06 60.5 4.1 52 101-159 1246-1308(2531)
145 cd00053 EGF Epidermal growth f 90.3 0.26 5.7E-06 33.6 2.6 24 139-162 6-31 (36)
146 PF02897 Peptidase_S9_N: Proly 90.3 36 0.00077 38.4 21.8 216 298-531 169-411 (414)
147 KOG0268|consensus 90.2 5.5 0.00012 42.5 13.0 216 324-553 85-330 (433)
148 cd00054 EGF_CA Calcium-binding 90.1 0.29 6.3E-06 34.0 2.7 23 139-161 9-33 (38)
149 KOG3509|consensus 89.1 0.87 1.9E-05 55.3 7.2 65 3-69 44-110 (964)
150 KOG0994|consensus 88.8 1.3 2.9E-05 53.4 8.1 78 81-161 842-943 (1758)
151 PF12947 EGF_3: EGF domain; I 88.8 0.41 8.9E-06 33.3 2.5 29 179-211 6-36 (36)
152 KOG4441|consensus 88.5 32 0.00069 40.7 19.6 179 359-556 331-530 (571)
153 PRK11138 outer membrane biogen 88.2 49 0.0011 37.1 29.2 102 455-572 256-358 (394)
154 TIGR03300 assembly_YfgL outer 88.1 47 0.001 36.8 29.8 102 455-573 241-344 (377)
155 PRK11138 outer membrane biogen 88.1 50 0.0011 37.0 27.0 134 412-564 256-391 (394)
156 smart00181 EGF Epidermal growt 87.8 0.52 1.1E-05 32.3 2.6 25 179-205 6-31 (35)
157 TIGR02276 beta_rpt_yvtn 40-res 87.5 1.9 4.2E-05 30.6 5.7 39 413-452 4-42 (42)
158 KOG1217|consensus 86.7 3.4 7.3E-05 47.4 10.2 101 99-214 321-432 (487)
159 COG5276 Uncharacterized conser 86.2 48 0.001 34.9 26.2 136 413-561 224-364 (370)
160 PF06247 Plasmod_Pvs28: Plasmo 86.2 0.2 4.3E-06 48.1 -0.3 98 101-210 51-167 (197)
161 PF09064 Tme5_EGF_like: Thromb 86.1 0.79 1.7E-05 30.9 2.5 26 600-627 6-31 (34)
162 PF00008 EGF: EGF-like domain 85.9 0.34 7.3E-06 32.8 0.8 22 140-161 5-29 (32)
163 PF05694 SBP56: 56kDa selenium 85.6 67 0.0014 36.0 18.9 78 671-757 314-393 (461)
164 KOG0994|consensus 85.5 3.2 6.9E-05 50.4 8.7 86 113-205 840-945 (1758)
165 KOG0268|consensus 85.4 15 0.00033 39.3 12.8 144 636-819 199-345 (433)
166 PF00930 DPPIV_N: Dipeptidyl p 85.1 66 0.0014 35.4 23.8 106 467-573 209-321 (353)
167 PHA02713 hypothetical protein; 84.8 77 0.0017 37.4 20.2 179 359-558 302-522 (557)
168 KOG0273|consensus 84.5 74 0.0016 35.5 22.6 71 406-477 322-392 (524)
169 KOG2397|consensus 84.2 0.93 2E-05 50.2 3.6 70 34-129 42-114 (480)
170 TIGR02276 beta_rpt_yvtn 40-res 84.2 4.9 0.00011 28.5 6.4 40 504-546 2-41 (42)
171 COG1520 FOG: WD40-like repeat 83.5 42 0.0009 37.2 16.6 107 455-572 111-222 (370)
172 PF05694 SBP56: 56kDa selenium 83.2 58 0.0013 36.4 16.6 67 445-513 313-393 (461)
173 cd00054 EGF_CA Calcium-binding 82.9 1.3 2.7E-05 30.6 2.7 31 172-204 2-34 (38)
174 PF02897 Peptidase_S9_N: Proly 82.4 92 0.002 35.0 24.9 126 424-558 203-346 (414)
175 KOG0315|consensus 82.3 63 0.0014 33.1 22.1 232 219-474 51-288 (311)
176 PTZ00420 coronin; Provisional 82.3 1.1E+02 0.0024 36.0 25.1 31 500-530 269-299 (568)
177 PF09064 Tme5_EGF_like: Thromb 81.4 1.7 3.7E-05 29.4 2.6 25 139-164 6-30 (34)
178 KOG0285|consensus 80.4 90 0.0019 33.7 24.3 149 413-574 163-314 (460)
179 PF14583 Pectate_lyase22: Olig 79.8 29 0.00062 38.3 12.9 61 422-485 59-119 (386)
180 smart00284 OLF Olfactomedin-li 79.7 64 0.0014 33.6 14.8 50 413-462 186-242 (255)
181 PF08662 eIF2A: Eukaryotic tra 79.7 69 0.0015 31.9 18.4 90 413-512 72-162 (194)
182 KOG0318|consensus 78.3 1.3E+02 0.0028 34.2 28.6 113 414-534 456-570 (603)
183 KOG0281|consensus 77.1 37 0.00079 36.2 12.0 98 413-525 330-429 (499)
184 PF10647 Gmad1: Lipoprotein Lp 76.4 1E+02 0.0022 32.1 24.8 195 350-563 25-233 (253)
185 KOG2106|consensus 75.7 1.5E+02 0.0032 33.6 29.7 154 413-575 340-497 (626)
186 PF00008 EGF: EGF-like domain 75.7 3.5 7.6E-05 27.8 2.9 19 184-204 11-30 (32)
187 cd00053 EGF Epidermal growth f 75.6 2.8 6.1E-05 28.3 2.6 25 179-205 6-32 (36)
188 KOG1408|consensus 75.3 1.8E+02 0.0039 34.4 24.6 87 669-771 325-411 (1080)
189 PF06247 Plasmod_Pvs28: Plasmo 75.1 3.2 6.9E-05 40.2 3.5 67 144-213 12-87 (197)
190 COG3211 PhoX Predicted phospha 74.1 22 0.00049 40.6 10.3 31 343-373 411-441 (616)
191 KOG1274|consensus 71.5 2.5E+02 0.0053 34.3 22.1 221 497-774 17-266 (933)
192 KOG3914|consensus 70.5 1.1E+02 0.0024 33.5 14.0 151 413-574 75-230 (390)
193 PTZ00420 coronin; Provisional 70.3 2.3E+02 0.005 33.5 28.3 121 442-572 73-202 (568)
194 PF04885 Stig1: Stigma-specifi 70.1 9.2 0.0002 35.5 5.2 6 79-84 112-117 (136)
195 KOG0266|consensus 68.8 2.2E+02 0.0047 32.6 22.6 144 415-570 217-367 (456)
196 KOG4441|consensus 68.7 99 0.0021 36.6 14.8 138 410-556 330-483 (571)
197 TIGR03075 PQQ_enz_alc_DH PQQ-d 68.7 2.4E+02 0.0052 33.0 23.5 18 447-464 390-407 (527)
198 PF02191 OLF: Olfactomedin-lik 67.1 1.7E+02 0.0036 30.6 14.7 153 360-517 78-242 (250)
199 PF12661 hEGF: Human growth fa 66.3 4.1 8.8E-05 21.5 1.2 9 153-161 1-9 (13)
200 KOG1407|consensus 65.5 1.7E+02 0.0038 30.3 14.2 135 254-458 70-204 (313)
201 KOG4378|consensus 65.5 2.4E+02 0.0052 31.9 19.9 110 447-568 168-281 (673)
202 KOG0266|consensus 65.5 2.5E+02 0.0055 32.1 27.3 147 414-571 172-322 (456)
203 KOG1274|consensus 65.3 1.2E+02 0.0027 36.7 14.1 149 352-525 17-169 (933)
204 KOG4649|consensus 64.5 1.8E+02 0.004 30.2 26.6 133 352-526 34-167 (354)
205 KOG2048|consensus 64.5 2.9E+02 0.0063 32.5 41.2 115 670-820 430-547 (691)
206 COG3211 PhoX Predicted phospha 64.1 51 0.0011 37.9 10.4 126 668-810 416-575 (616)
207 KOG0276|consensus 63.7 2.9E+02 0.0064 32.3 33.7 93 413-513 67-160 (794)
208 KOG0308|consensus 63.6 2.6E+02 0.0056 32.8 15.7 88 735-836 211-300 (735)
209 KOG0318|consensus 63.2 2.7E+02 0.0059 31.8 48.5 343 413-810 202-586 (603)
210 KOG0272|consensus 62.4 2.5E+02 0.0055 31.1 19.7 266 413-766 187-456 (459)
211 KOG1226|consensus 61.3 30 0.00066 40.9 8.3 11 121-131 569-579 (783)
212 smart00284 OLF Olfactomedin-li 61.0 2.2E+02 0.0047 29.8 14.8 150 360-514 83-244 (255)
213 PF14339 DUF4394: Domain of un 60.0 2.1E+02 0.0046 29.4 17.1 33 249-284 27-59 (236)
214 TIGR03300 assembly_YfgL outer 59.5 2.8E+02 0.006 30.6 31.9 102 455-572 65-168 (377)
215 COG4247 Phy 3-phytase (myo-ino 59.5 2.2E+02 0.0048 29.4 23.1 64 445-518 206-272 (364)
216 KOG4328|consensus 59.3 3E+02 0.0065 30.9 14.9 76 444-523 323-398 (498)
217 KOG0281|consensus 58.6 1.1E+02 0.0024 32.8 11.0 209 327-569 216-430 (499)
218 KOG0310|consensus 58.3 2.7E+02 0.0059 31.4 14.4 103 672-810 114-217 (487)
219 KOG3658|consensus 57.8 21 0.00046 41.4 6.2 84 76-161 498-597 (764)
220 KOG0291|consensus 56.3 4.3E+02 0.0092 31.7 42.9 78 666-772 433-510 (893)
221 KOG0273|consensus 55.5 3.5E+02 0.0076 30.5 25.4 217 219-461 246-470 (524)
222 PTZ00421 coronin; Provisional 54.2 4E+02 0.0088 30.9 29.7 116 349-476 76-198 (493)
223 PHA02713 hypothetical protein; 54.1 2.7E+02 0.0059 32.8 15.1 135 411-556 302-471 (557)
224 TIGR02171 Fb_sc_TIGR02171 Fibr 52.8 2.2E+02 0.0048 35.1 13.7 49 492-541 545-603 (912)
225 KOG1539|consensus 50.6 5.4E+02 0.012 31.3 29.8 77 444-527 449-526 (910)
226 PHA02790 Kelch-like protein; P 49.6 4.6E+02 0.01 30.2 17.8 131 411-556 317-454 (480)
227 KOG0272|consensus 48.8 4.2E+02 0.0091 29.5 22.6 250 265-555 189-448 (459)
228 PRK13616 lipoprotein LpqB; Pro 48.7 4.5E+02 0.0097 31.3 15.6 77 739-828 449-534 (591)
229 KOG0319|consensus 48.3 5.5E+02 0.012 30.7 25.8 113 443-567 62-179 (775)
230 KOG0310|consensus 47.6 4.6E+02 0.01 29.6 16.0 147 413-570 80-228 (487)
231 KOG0279|consensus 47.3 3.6E+02 0.0079 28.3 24.2 143 417-570 121-265 (315)
232 TIGR03075 PQQ_enz_alc_DH PQQ-d 45.8 5.5E+02 0.012 30.0 20.3 17 353-369 238-254 (527)
233 KOG1446|consensus 45.7 4E+02 0.0087 28.4 26.3 99 421-526 160-264 (311)
234 KOG1836|consensus 44.8 36 0.00078 44.9 6.1 55 72-126 698-765 (1705)
235 PF07974 EGF_2: EGF-like domai 44.5 24 0.00052 23.9 2.5 22 102-128 8-29 (32)
236 KOG2111|consensus 44.4 4.3E+02 0.0093 28.3 20.8 173 360-564 75-253 (346)
237 PF14339 DUF4394: Domain of un 44.1 3.8E+02 0.0082 27.6 18.9 30 352-382 30-59 (236)
238 KOG2048|consensus 43.9 6.1E+02 0.013 30.0 41.2 137 662-829 376-513 (691)
239 PF08662 eIF2A: Eukaryotic tra 42.4 3.5E+02 0.0076 26.8 16.9 108 664-808 55-163 (194)
240 KOG0650|consensus 41.0 6.5E+02 0.014 29.4 15.1 108 408-526 527-639 (733)
241 PTZ00214 high cysteine membran 40.8 1.3E+02 0.0029 36.9 9.8 81 121-214 619-702 (800)
242 KOG1445|consensus 40.8 5.7E+02 0.012 30.0 13.7 123 251-385 630-756 (1012)
243 PHA02790 Kelch-like protein; P 40.3 5.8E+02 0.013 29.4 14.8 130 413-555 272-414 (480)
244 KOG2055|consensus 39.8 6E+02 0.013 28.7 22.2 137 669-811 345-505 (514)
245 KOG0649|consensus 39.2 4.5E+02 0.0098 27.1 16.9 82 492-576 113-195 (325)
246 PF06739 SBBP: Beta-propeller 38.7 24 0.00052 24.8 1.9 19 494-513 13-31 (38)
247 KOG1445|consensus 38.0 1.1E+02 0.0025 35.4 7.8 130 642-799 600-731 (1012)
248 KOG0293|consensus 37.8 6.1E+02 0.013 28.2 19.7 150 416-577 327-480 (519)
249 KOG2055|consensus 37.5 6.5E+02 0.014 28.4 18.6 80 664-769 430-511 (514)
250 KOG0303|consensus 37.1 6.2E+02 0.013 28.0 18.4 50 413-464 185-236 (472)
251 PF02191 OLF: Olfactomedin-lik 36.7 5.1E+02 0.011 27.0 22.4 105 411-524 77-203 (250)
252 KOG2110|consensus 35.9 6.2E+02 0.013 27.7 15.7 82 731-822 167-249 (391)
253 PF07433 DUF1513: Protein of u 35.0 6E+02 0.013 27.3 20.5 53 412-464 62-119 (305)
254 KOG4258|consensus 34.8 41 0.0009 40.3 4.0 68 145-214 255-326 (1025)
255 PF14517 Tachylectin: Tachylec 34.6 5.2E+02 0.011 26.5 13.1 137 413-564 45-203 (229)
256 PF05131 Pep3_Vps18: Pep3/Vps1 33.7 1.9E+02 0.0042 27.4 7.7 73 737-826 33-108 (147)
257 TIGR02171 Fb_sc_TIGR02171 Fibr 33.0 2.5E+02 0.0055 34.6 10.2 96 413-517 320-424 (912)
258 KOG2139|consensus 32.0 7.2E+02 0.016 27.3 12.3 96 421-528 216-315 (445)
259 KOG2110|consensus 31.8 7.2E+02 0.016 27.2 15.3 99 420-526 150-250 (391)
260 KOG2139|consensus 31.7 7.2E+02 0.016 27.2 22.8 120 445-566 282-430 (445)
261 PF03178 CPSF_A: CPSF A subuni 31.6 6.7E+02 0.015 26.8 13.1 98 446-557 91-193 (321)
262 KOG0289|consensus 31.3 7.9E+02 0.017 27.6 19.8 121 444-573 304-425 (506)
263 PF08309 LVIVD: LVIVD repeat; 30.5 1.8E+02 0.0039 21.0 5.3 33 541-574 4-36 (42)
264 PLN00181 protein SPA1-RELATED; 29.8 1.1E+03 0.025 29.0 35.2 292 353-698 488-792 (793)
265 PF07433 DUF1513: Protein of u 29.3 7.4E+02 0.016 26.6 24.5 201 324-566 73-284 (305)
266 KOG0270|consensus 29.2 8.6E+02 0.019 27.3 14.9 146 634-819 298-446 (463)
267 KOG3567|consensus 28.6 81 0.0018 35.3 4.7 55 467-526 444-498 (501)
268 KOG3512|consensus 28.2 1.5E+02 0.0032 33.3 6.5 42 44-88 335-379 (592)
269 COG1520 FOG: WD40-like repeat 28.0 8.3E+02 0.018 26.8 20.3 25 504-528 196-222 (370)
270 KOG4649|consensus 27.5 7.3E+02 0.016 26.0 30.9 134 407-575 37-173 (354)
271 KOG3621|consensus 27.1 1.1E+03 0.025 28.1 17.8 191 353-573 47-251 (726)
272 KOG3545|consensus 26.0 6.2E+02 0.013 26.2 10.1 52 411-462 178-236 (249)
273 KOG2096|consensus 26.0 8.5E+02 0.018 26.2 13.8 156 347-528 131-303 (420)
274 KOG4258|consensus 25.9 46 0.00099 40.0 2.4 17 155-171 309-325 (1025)
275 PF01826 TIL: Trypsin Inhibito 25.6 75 0.0016 24.2 2.9 22 153-175 34-55 (55)
276 KOG0973|consensus 25.5 1.1E+03 0.025 29.3 13.8 65 407-472 134-199 (942)
277 PF04885 Stig1: Stigma-specifi 24.8 1.5E+02 0.0034 27.6 5.2 34 70-112 74-108 (136)
278 KOG3545|consensus 24.6 8E+02 0.017 25.4 12.5 107 412-524 77-202 (249)
279 KOG0308|consensus 24.6 1.2E+03 0.027 27.6 18.2 95 417-521 229-324 (735)
280 KOG1226|consensus 24.5 2.9E+02 0.0063 33.2 8.4 9 153-161 567-575 (783)
281 KOG3914|consensus 23.9 1E+03 0.022 26.4 11.9 106 669-811 108-215 (390)
282 KOG1587|consensus 23.7 7.1E+02 0.015 29.3 11.5 115 251-380 350-473 (555)
283 KOG0649|consensus 22.6 8.7E+02 0.019 25.1 14.0 75 669-773 115-189 (325)
284 KOG0196|consensus 22.6 1E+02 0.0022 37.2 4.3 73 153-230 260-344 (996)
285 KOG4328|consensus 22.2 1.9E+02 0.0042 32.3 6.0 112 670-818 236-352 (498)
286 KOG2321|consensus 21.7 8.2E+02 0.018 28.5 10.8 30 672-702 137-166 (703)
287 KOG0319|consensus 21.6 1.5E+03 0.032 27.4 29.2 372 347-822 61-443 (775)
288 KOG0292|consensus 21.6 1.6E+03 0.035 27.9 31.0 75 444-525 207-281 (1202)
289 KOG0284|consensus 21.5 1.1E+03 0.025 26.1 13.3 198 446-702 141-340 (464)
290 KOG3567|consensus 21.5 4.1E+02 0.0088 30.0 8.4 51 515-566 444-495 (501)
291 KOG1517|consensus 21.1 1.8E+03 0.038 28.2 15.2 201 329-543 1136-1352(1387)
292 KOG3881|consensus 20.9 6.6E+02 0.014 27.7 9.6 96 413-517 216-312 (412)
293 KOG3658|consensus 20.9 2.4E+02 0.0051 33.4 6.6 47 151-201 549-595 (764)
294 KOG1034|consensus 20.8 1E+03 0.023 25.7 10.8 106 635-771 104-212 (385)
295 PF12946 EGF_MSP1_1: MSP1 EGF 20.6 1E+02 0.0023 21.6 2.4 22 184-206 12-33 (37)
No 1
>KOG1214|consensus
Probab=100.00 E-value=9.1e-57 Score=488.27 Aligned_cols=386 Identities=35% Similarity=0.687 Sum_probs=308.8
Q ss_pred CCCCCCCCCCCCCCC--CCccc---ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccc----cccCC---
Q psy14257 112 KALVCDGEPACFNGE--DEMFC---DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYL----HPCEA--- 177 (841)
Q Consensus 112 ~~~~Cdg~~~C~~g~--de~~C---~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~----~eC~~--- 177 (841)
.++.| .|.+|| |+..| |||+ ++.|.+ .|.|++++|.|.|.+||+ .||.+|..- ..|+.
T Consensus 807 s~y~C----~CLPGfsGDG~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~--GDGf~CVP~~~~~T~C~~er~ 878 (1289)
T KOG1214|consen 807 STYSC----ACLPGFSGDGHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYY--GDGFQCVPDTSSLTPCEQERF 878 (1289)
T ss_pred ceEEE----eecCCccCCccccccccccC--ccccCCCceEecCCCcceeecccCcc--CCCceecCCCccCCccccccc
Confidence 37888 999999 45556 8898 668964 899999999999999998 567777532 22210
Q ss_pred ----------------------------CC----Ccc----C---ceee-------cCCCCceEEeecCC--eeecC---
Q psy14257 178 ----------------------------WG----TCS----Q---DCEP-------SVSNNSYKCTCHAG--YELEP--- 206 (841)
Q Consensus 178 ----------------------------~~----~Cs----~---~C~~-------~~~~g~~~C~C~~G--~~l~~--- 206 (841)
++ .|. + .|.. .+|..++.|+|..+ .....
T Consensus 879 hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gtr~ 958 (1289)
T KOG1214|consen 879 HPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGTRS 958 (1289)
T ss_pred cceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCcccccc
Confidence 01 010 1 1110 02455689999763 22110
Q ss_pred ---CCCceEeCC---------------CCCCCCeEEeccCcccccccccccc-----EEEEec-cccceeeecccccCCc
Q psy14257 207 ---DMFTCKSKS---------------KNDSSPFVIFSNRHELRGVDLRTFN-----VIALIS-SLKNTIALDFYYTPTA 262 (841)
Q Consensus 207 ---d~~~C~~~~---------------~~~~~p~ll~s~~~~I~~~~~~~~~-----~~~l~~-~~~~~~avd~~~~~~~ 262 (841)
....|.... ......+|||++...|.++++++.. .++++. .-+.+++||||.++++
T Consensus 959 ~pg~tp~CiptvApp~v~np~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~m 1038 (1289)
T KOG1214|consen 959 QPGTTPACIPTVAPPMVRNPTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERM 1038 (1289)
T ss_pred CCCCCCCccCCCCCCcccCCCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccce
Confidence 011232211 0122348999999999999998732 233332 2356899999998855
Q ss_pred ceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccc
Q psy14257 263 NMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSP 342 (841)
Q Consensus 263 ~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~ 342 (841)
|||+|.....|.|++|.|+ +.++++..+|.+|+||||||.+
T Consensus 1039 --vyWtDv~g~SI~rasL~G~---Ep~ti~n~~L~SPEGiAVDh~~---------------------------------- 1079 (1289)
T KOG1214|consen 1039 --VYWTDVAGRSISRASLEGA---EPETIVNSGLISPEGIAVDHIR---------------------------------- 1079 (1289)
T ss_pred --EEEeecCCCccccccccCC---CCceeecccCCCccceeeeecc----------------------------------
Confidence 9999999999999999854 7899999999999999999876
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL 422 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~ 422 (841)
+++||||+..
T Consensus 1080 ----------------------------------------------------------------------Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1080 ----------------------------------------------------------------------RNMYWTDSVL 1089 (1289)
T ss_pred ----------------------------------------------------------------------ceeeeecccc
Confidence 8899999999
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
++|+|+.|||+.+++|+.++|.+||+|++|+.+|.||||||++++++|++++|||+++++++. ..+..||||++|
T Consensus 1090 D~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin-----~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1090 DKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN-----TDIGLPNGLTFD 1164 (1289)
T ss_pred chhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee-----cccCCCCCceeC
Confidence 999999999999999999999999999999999999999999999999999999999999999 799999999999
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEE-EecccCC
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL-IQRTLTQ 581 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~-i~~~~~~ 581 (841)
+..+.|-|+|+++++++.+.++|..|+++..+ |+.||+|+-+++.+|||||..++|..+++..++.... +...-..
T Consensus 1165 pfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~---LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~ 1241 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN---LQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSH 1241 (1289)
T ss_pred cccceeeEEecCCcceeEecCCCCcchhhhhc---ccCceeeeeccccceeeccccCceEEeeccccccccccccccccc
Confidence 99999999999999999999999999998865 8999999999999999999999999999988776543 3222233
Q ss_pred Cceec----cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCce
Q psy14257 582 PFIYV----NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMK 623 (841)
Q Consensus 582 p~~~h----~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~ 623 (841)
.+|+. .-|.+++||+.+||||+||||+.-++ ..|.||+...
T Consensus 1242 lyGItav~~~Cp~gstpCSedNGGCqHLCLpgqng-avcecpdnvk 1286 (1289)
T KOG1214|consen 1242 LYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQNG-AVCECPDNVK 1286 (1289)
T ss_pred eEEEEeccccCCCCCCcccccCCcceeecccCcCC-ccccCCccce
Confidence 55522 45899999999999999999987766 6899998643
No 2
>KOG1215|consensus
Probab=100.00 E-value=1.1e-54 Score=532.35 Aligned_cols=641 Identities=36% Similarity=0.691 Sum_probs=509.0
Q ss_pred CeeccCccCcCCcCCCCCCCCCCCCCCCCCCC--C-------------------------------------CCCcccCC
Q psy14257 1 MTCIIAYWKCDGDEDCKDGSDELAEHCQDRKC--D-------------------------------------ESHFTCNE 41 (841)
Q Consensus 1 ~~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C--~-------------------------------------~~~~~C~~ 41 (841)
.+|||..|+||+..||.||+||. .|....+ . ...++|..
T Consensus 150 ~~Cip~~~~cd~~~~C~dg~de~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g 227 (877)
T KOG1215|consen 150 CKCIPGDWLCDGEADCPDGSDEL--NCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSRIEVTRCDG 227 (877)
T ss_pred ccCCCCceeCCCCCccccchhhh--cccccccCccccccccceeeeecCcccccccccccccCcccccCCcceeEEEecC
Confidence 37999999999999999999999 6642112 1 23344543
Q ss_pred CCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCC
Q psy14257 42 TLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121 (841)
Q Consensus 42 ~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~ 121 (841)
...||...|+|||..||. +++||.- .+|.. ..|...++.|.+ +.|++....|+|..+
T Consensus 228 ~~~~i~~~~~~Dg~~dc~--~~~de~~-----------~~~~~--------~~~~~~e~~~~~--~~~~~~~~~~~g~~d 284 (877)
T KOG1215|consen 228 SSRCILISEVCDGPRDCV--DGPDEGV-----------MNCSD--------ATCEAPEIECAD--GDCSDRQKLCDGDLD 284 (877)
T ss_pred CCcEEeehhccCCCcccc--cCCcCce-----------eEeec--------cccCCcceeecC--CCCccceEEecCccC
Confidence 346666666666666666 6555520 12221 345556778876 889898888999999
Q ss_pred CCCCCCCccc-------------------------------ccccccCCCCCCCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 122 CFNGEDEMFC-------------------------------DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 122 C~~g~de~~C-------------------------------~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
|++|.++..| ++|......|.+.|.+......|.|..++.+...... .
T Consensus 285 ~pdg~de~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 363 (877)
T KOG1215|consen 285 CPDGLDEDYCKKKLYWSMNVDGSGRRILLSKLCHGYWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGART-D 363 (877)
T ss_pred CCCcccccccccceeeeeecccCCceeeecccCccccccccccchhhcccccCCCCccccCCcccCCccceecccccc-c
Confidence 9999988633 2333344577788999999999999999988665555 2
Q ss_pred cccccCCCCCccCcee-ecCCCCceEEeecCCeeecCCCCceEeCCCCCCCCeEEeccCccccccccccccEEEEecccc
Q psy14257 171 YLHPCEAWGTCSQDCE-PSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLK 249 (841)
Q Consensus 171 ~~~eC~~~~~Cs~~C~-~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~p~ll~s~~~~I~~~~~~~~~~~~l~~~~~ 249 (841)
..+++...+.|+|.|. +. ++.+.|.|..||.+..++ |... ...++++++++..+|+++.++...+...++.+.
T Consensus 364 ~~~~~~~~g~Csq~C~~~~--p~~~~c~c~~g~~~~~~~--c~~~--~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~ 437 (877)
T KOG1215|consen 364 SNPCESDNGGCSQLCVPNS--PGTFKCACSPGYELRLDK--CEAS--DQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIK 437 (877)
T ss_pred CCcccccCCccceeccCCC--CCceeEecCCCcEeccCC--ceec--CCCCcEEEEecCccceecccCCCcceEEccCCc
Confidence 2333346799999998 55 899999999999998777 7665 457899999999999999998876666667678
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
+++++|+++.++. +||+|....+|.++...+.. ... +...++..|+|+|+||.+
T Consensus 438 ~~~~~d~d~~~~~--i~~~d~~~~~i~~~~~~~~~--~~~-~~~~g~~~~~~lavD~~~--------------------- 491 (877)
T KOG1215|consen 438 NAVALDFDVLNNR--IYWADLSDEKICRASQDGSS--ECE-LCGDGLCIPEGLAVDWIG--------------------- 491 (877)
T ss_pred cceEEEEEecCCE--EEEEeccCCeEeeeccCCCc--cce-EeccCccccCcEEEEecc---------------------
Confidence 8999999998776 99999999999999877654 223 566778888888888766
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNL 409 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avd 409 (841)
T Consensus 492 -------------------------------------------------------------------------------- 491 (877)
T KOG1215|consen 492 -------------------------------------------------------------------------------- 491 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 410 WIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 410 w~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
+++||+|.....|.+.+++|..+.+++...+..|+.++++|..|++||+||+. .++|.|+.|||+.+..++.
T Consensus 492 ---~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~-~~~i~ra~~dg~~~~~l~~---- 563 (877)
T KOG1215|consen 492 ---DNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQ-PPRIERASLDGSERAVLVT---- 563 (877)
T ss_pred ---CCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCC-CchhhhhcCCCCCceEEEe----
Confidence 88899999999999999999999999998889999999999999999999996 5699999999999999998
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCC-eEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSD-SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~-~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
.++.+|+||++|...+++||+|.... .|++++.+|..++.+. ...+.+|++++++++++||+||....+.+..+..
T Consensus 564 -~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~--~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~ 640 (877)
T KOG1215|consen 564 -NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD--SEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHK 640 (877)
T ss_pred -CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec--cccCCCceEEEEecceeEEeeccccceEeeeccc
Confidence 67899999999999999999999998 8999999999998222 2358999999999999999999999999999988
Q ss_pred CcceEEEecccCCCce---e-c--cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 569 GSDVTLIQRTLTQPFI---Y-V--NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 569 g~~~~~i~~~~~~p~~---~-h--~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
+.....+......|.. + | .+|.+.|+|+..|++|+|+|++.+.+. +|+||.|+.|..++++|. ....+++++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~-~~~~~~~~~ 718 (877)
T KOG1215|consen 641 GSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCS-SPEGYLLIT 718 (877)
T ss_pred CCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeec-Ccccccccc
Confidence 8761123334455554 4 3 678999999999999999999999887 999999999999999999 577789999
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
....|..+..+.......+. +.. +..++..+|++...+...+...+...
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 767 (877)
T KOG1215|consen 719 SRTGIPCISLDSELSPDQPL-EDG----------DTIDRLEYWTDVRVGVAAVSSQNCAP-------------------- 767 (877)
T ss_pred cccccceeecCcccCCCccc-CCC----------cccccceecccccceeeEEEecCCCC--------------------
Confidence 99999988887654443221 111 77899999999877777777776655
Q ss_pred cccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCe
Q psy14257 723 SIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGK 802 (841)
Q Consensus 723 ~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~ 802 (841)
...++......|.++|+++..+.|||+ ....+.|.+..+++..............+.+..|+.+.++|....
T Consensus 768 ------~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (877)
T KOG1215|consen 768 ------GYDLVGEGEPPPEGSAVDEAEDTLYWT--CSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSL 839 (877)
T ss_pred ------ccccccccCCCCCCceeehhhcceEEE--eecccEEEEEEEeeecccccccccccccCCCCCCcceeeccccce
Confidence 112455677889999999999999999 457889999999885211111000011112789999999999999
Q ss_pred EEEEecCCCcceEEEEecCCCceEEEecCC
Q psy14257 803 MFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832 (841)
Q Consensus 803 lyw~d~~~~~~~I~~~~~dG~~~~~l~~~~ 832 (841)
+||+++ ...+.|.++.++++++..++...
T Consensus 840 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 868 (877)
T KOG1215|consen 840 LFWTNW-EPGPKIPRSALDGSERLVLFKSL 868 (877)
T ss_pred eccCCc-cccceeeecccccccccceeccC
Confidence 999998 33368999999999999998876
No 3
>KOG1215|consensus
Probab=100.00 E-value=2.2e-33 Score=344.66 Aligned_cols=452 Identities=29% Similarity=0.516 Sum_probs=358.0
Q ss_pred ccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEe
Q psy14257 299 AEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378 (841)
Q Consensus 299 p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l 378 (841)
|+.+|++|.. ++|||+||+++ |+ ||..++.+....+.||+|+++|+..+.+||+|...+.|.+.++
T Consensus 1 pra~~~~p~~--~~l~wtd~~~~--------i~----dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~ 66 (877)
T KOG1215|consen 1 PRAIALLPLE--GLLFWTDWGAN--------IE----DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANY 66 (877)
T ss_pred CceEEecccc--ceEEEecCCcc--------cc----cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEecc
Confidence 6678888854 99999999851 55 7777778888899999999999999999999999999999999
Q ss_pred cCCccEEE--Eee---------------------------------eeecC---C---Ccccc-----------------
Q psy14257 379 DGSERTVS--FNL---------------------------------EVLGS---D---SRVGI----------------- 400 (841)
Q Consensus 379 dG~~~~~~--~~~---------------------------------~~~~~---~---~~~~i----------------- 400 (841)
+|+.++.+ +.. ..... + .....
T Consensus 67 dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 146 (877)
T KOG1215|consen 67 DGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCR 146 (877)
T ss_pred CCccceeeeeeccceeeccchhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCCc
Confidence 99764400 000 00000 0 00000
Q ss_pred -------C---------CC-----------------------------------CCCccccccceEEEEecCCCcEEEEc
Q psy14257 401 -------P---------NC-----------------------------------RPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 401 -------~---------~~-----------------------------------~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
+ .| -+.+.|-....+||++.. +|.+++
T Consensus 147 ~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~--~~~~~~ 224 (877)
T KOG1215|consen 147 TGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDS--RIEVTR 224 (877)
T ss_pred CccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCc--ceeEEE
Confidence 0 00 011123455667777643 689999
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
.+|+...+........|++++..+..+++||+++....+.+...++++..+..+.. ..+..|+|++.++....+|
T Consensus 225 c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-----g~~d~pdg~de~~~~~~~~ 299 (877)
T KOG1215|consen 225 CDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCD-----GDLDCPDGLDEDYCKKKLY 299 (877)
T ss_pred ecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEec-----CccCCCCccccccccccee
Confidence 99987777777778899999999999999999998666799999999999999877 6777899999999999999
Q ss_pred EEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCCce---ec
Q psy14257 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFI---YV 586 (841)
Q Consensus 510 w~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~---~h 586 (841)
| ..++++..++ |.... +.++ ||+++.+..+.+..+.++....+.........+ ++
T Consensus 300 ~---------~~~~d~~~~~-i~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 357 (877)
T KOG1215|consen 300 W---------SMNVDGSGRR-ILLSK--LCHG----------YWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLP 357 (877)
T ss_pred e---------eeecccCCce-eeecc--cCcc----------ccccccccchhhcccccCCCCccccCCcccCCccceec
Confidence 9 6778887777 65442 3333 699998888877777666654443333222222 33
Q ss_pred -cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeec
Q psy14257 587 -NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISI 665 (841)
Q Consensus 587 -~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 665 (841)
......++|...||+|+|+|+....+.+.|+|+.||.+..++..+......|++++....|+.+.++.. ....|+
T Consensus 358 ~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ir~~~~~~~----~~~~p~ 433 (877)
T KOG1215|consen 358 LGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHDIRRISLDCS----DVSRPL 433 (877)
T ss_pred ccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCccceecccCCC----cceEEc
Confidence 222367999999999999999766677999999999999887222223589999999999999999876 234566
Q ss_pred CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 666 ~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
.++.++.++++|..++.+||+|.....|.+...++.. ...+...+...|.+||+
T Consensus 434 ~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~--------------------------~~~~~~~g~~~~~~lav 487 (877)
T KOG1215|consen 434 EGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSS--------------------------ECELCGDGLCIPEGLAV 487 (877)
T ss_pred cCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCc--------------------------cceEeccCccccCcEEE
Confidence 7778899999999999999999999999999999877 44566778899999999
Q ss_pred eecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 746 DWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 746 D~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
||+.+++||+ |.....|++.+++|..|.+++.. .+..|++++|||..|+|||+||+.. ++|+|+.|||+.|
T Consensus 488 D~~~~~~y~t--De~~~~i~v~~~~g~~~~vl~~~------~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~ 558 (877)
T KOG1215|consen 488 DWIGDNIYWT--DEGNCLIEVADLDGSSRKVLVSK------DLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSER 558 (877)
T ss_pred EeccCCceec--ccCCceeEEEEccCCceeEEEec------CCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCc
Confidence 9999999999 78999999999999999999974 1689999999999999999999974 6999999999999
Q ss_pred EEEecCC
Q psy14257 826 ETVVSQK 832 (841)
Q Consensus 826 ~~l~~~~ 832 (841)
.+++...
T Consensus 559 ~~l~~~~ 565 (877)
T KOG1215|consen 559 AVLVTNG 565 (877)
T ss_pred eEEEeCC
Confidence 9999986
No 4
>KOG1214|consensus
Probab=100.00 E-value=3.5e-33 Score=304.90 Aligned_cols=248 Identities=22% Similarity=0.375 Sum_probs=199.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEE-----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRR-----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD 487 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~-----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~ 487 (841)
.+|.++. ..+|....++|.... +++.-.-.-|.||++|-...++||||.. .+.|.|+.|.|...+.++.
T Consensus 991 t~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~--g~SI~rasL~G~Ep~ti~n-- 1064 (1289)
T KOG1214|consen 991 TFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVA--GRSISRASLEGAEPETIVN-- 1064 (1289)
T ss_pred ceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecC--CCccccccccCCCCceeec--
Confidence 3444443 245666666654321 2333333568999999999999999987 7899999999999999998
Q ss_pred ccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEe
Q psy14257 488 LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 488 ~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~ 565 (841)
..|..|.|||||.....+||+|+.+++|+++.|||+.+++++... |-+|.+|++ ..++||||||...
T Consensus 1065 ---~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~td--LVNPR~iv~D~~rgnLYwtDWnRe------ 1133 (1289)
T KOG1214|consen 1065 ---SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTD--LVNPRAIVVDPIRGNLYWTDWNRE------ 1133 (1289)
T ss_pred ---ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeec--ccCcceEEeecccCceeecccccc------
Confidence 789999999999999999999999999999999999999998765 778888887 4688999888521
Q ss_pred ccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCC
Q psy14257 566 KWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPR 645 (841)
Q Consensus 566 ~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~ 645 (841)
T Consensus 1134 -------------------------------------------------------------------------------- 1133 (1289)
T KOG1214|consen 1134 -------------------------------------------------------------------------------- 1133 (1289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccccccc
Q psy14257 646 EIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIV 725 (841)
Q Consensus 646 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (841)
+-.|.+..+||++
T Consensus 1134 --------------------------------------------nPkIets~mDG~N----------------------- 1146 (1289)
T KOG1214|consen 1134 --------------------------------------------NPKIETSSMDGEN----------------------- 1146 (1289)
T ss_pred --------------------------------------------CCcceeeccCCcc-----------------------
Confidence 0112233355666
Q ss_pred CceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEE
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW 805 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw 805 (841)
++++++.++.-|+||.||+.++.|-|+ |.++++++-...+|..|+++.++ |.-|.+|+-+.+ .+||
T Consensus 1147 ---rRilin~DigLPNGLtfdpfs~~LCWv--DAGt~rleC~~p~g~gRR~i~~~-------LqYPF~itsy~~--~fY~ 1212 (1289)
T KOG1214|consen 1147 ---RRILINTDIGLPNGLTFDPFSKLLCWV--DAGTKRLECTLPDGTGRRVIQNN-------LQYPFSITSYAD--HFYH 1212 (1289)
T ss_pred ---ceEEeecccCCCCCceeCcccceeeEE--ecCCcceeEecCCCCcchhhhhc-------ccCceeeeeccc--ccee
Confidence 667788899999999999999999999 78999999999999999999998 999999999877 5999
Q ss_pred EecCCCcceEEEEecCCCceEEEecCCCCceeccc
Q psy14257 806 SNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTGV 840 (841)
Q Consensus 806 ~d~~~~~~~I~~~~~dG~~~~~l~~~~~~~~~~~~ 840 (841)
|||..+ +|...++-++.-+-.....+..-+.||
T Consensus 1213 TDWk~n--~vvsv~~~~~~~td~~~p~~~s~lyGI 1245 (1289)
T KOG1214|consen 1213 TDWKRN--GVVSVNKHSGQFTDEYLPEQRSHLYGI 1245 (1289)
T ss_pred eccccC--ceEEeeccccccccccccccccceEEE
Confidence 999986 799999888877666655544445554
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.85 E-value=2.4e-19 Score=220.57 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=198.9
Q ss_pred EEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc-------------cCcCCCceEEEE
Q psy14257 291 VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT-------------KNIQWPSSLVID 357 (841)
Q Consensus 291 ~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~-------------~~~~~P~glavD 357 (841)
++.+.+..|.|+|+|..++++|| +| ..+++|.+++.+|.....+.. ..+..|.||++|
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyV--aD-------s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd 632 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFI--SD-------SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN 632 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEE--EE-------CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe
Confidence 34567889999999976656665 44 345699999999886554443 246789999999
Q ss_pred ccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCcccc-----CCCCC--CccccccceEEEEecCCCcEEEEcc
Q psy14257 358 YNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI-----PNCRP--EDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 358 ~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i-----~~~~~--~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
.+++.|||+|..+++|+++++.++..+.+......+.+...+. ....| +++|..++.||++|..+++|.++++
T Consensus 633 ~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~ 712 (1057)
T PLN02919 633 AKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI 712 (1057)
T ss_pred CCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC
Confidence 9999999999999999999998877666654332221111110 01122 4566667999999999999999998
Q ss_pred CCceEEEEec--------------CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec---------
Q psy14257 431 SGQFRRTLIA--------------GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD--------- 487 (841)
Q Consensus 431 ~G~~~~~l~~--------------~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~--------- 487 (841)
.+....++.. ..+..|.||+++|..++||++|.. +++|.++++++.....+....
T Consensus 713 ~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 713 SDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred CCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecccccCccccc
Confidence 7655444322 135789999999998899999988 789999999754443332100
Q ss_pred c-------cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-----------CCCCcceEEEEe-c
Q psy14257 488 L-------LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH-----------DSLTHPFAIALF-E 548 (841)
Q Consensus 488 ~-------~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~-----------~~l~~P~gla~~-~ 548 (841)
. ....+..|.|+++|. +++||++|..+++|.++++++....++.... ..+..|.||++. +
T Consensus 791 fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 791 FGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred ccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 001356899999995 5689999999999999999988777665421 245689999995 5
Q ss_pred CeEEEEeCCCCeEEEEeccCCcc
Q psy14257 549 NHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 549 ~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
|+||++|..+++|..++..+++.
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCcc
Confidence 89999999999999999877764
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.83 E-value=9.8e-18 Score=206.48 Aligned_cols=225 Identities=17% Similarity=0.222 Sum_probs=164.2
Q ss_pred cccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecC-CCcc---ccCCCCCCccccccceEEEEe
Q psy14257 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS-DSRV---GIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 344 ~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~-~~~~---~i~~~~~~avdw~~~~LY~tD 419 (841)
+..++..|.||++|..++.||++|..+++|++++++|.....+......+. +... .+.....+++|..++.|||+|
T Consensus 563 ~~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 563 LTSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred ccccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 345789999999999999999999999999999999875444322111110 0000 011112235555667899999
Q ss_pred cCCCcEEEEccCCceEEEEecC----------------CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 420 SNLDQIEVAKLSGQFRRTLIAG----------------DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~~~~l~~~----------------~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
..+++|.++++.+...+++... .+..|.+|+++|.+|.||+++.+ +++|++.+..+....++
T Consensus 643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--CCeEEEEECCCCeEEEE
Confidence 9999999999988777766431 15689999999988999999988 78999998865433333
Q ss_pred EEecc---------cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC-------------------C
Q psy14257 484 VRVDL---------LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN-------------------H 535 (841)
Q Consensus 484 ~~~~~---------~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~-------------------~ 535 (841)
...+. ....+..|.||++++.+++||++|..+++|+++++++.....+... .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 21100 0124678999999998889999999999999999986544433311 1
Q ss_pred CCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCc
Q psy14257 536 DSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 536 ~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
..+.+|.||++. +|.||++|+.+++|.+++..++.
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 135689999995 47899999999999999876554
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.74 E-value=4.7e-16 Score=163.10 Aligned_cols=229 Identities=21% Similarity=0.260 Sum_probs=157.2
Q ss_pred eeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEE
Q psy14257 252 IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIE 331 (841)
Q Consensus 252 ~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~ 331 (841)
.++.|+.+.+. |||+|...++|+++++.++. ..++. +..|.|++++...+.+|+ ++. +.+.
T Consensus 3 Egp~~d~~~g~--l~~~D~~~~~i~~~~~~~~~----~~~~~--~~~~~G~~~~~~~g~l~v--~~~---------~~~~ 63 (246)
T PF08450_consen 3 EGPVWDPRDGR--LYWVDIPGGRIYRVDPDTGE----VEVID--LPGPNGMAFDRPDGRLYV--ADS---------GGIA 63 (246)
T ss_dssp EEEEEETTTTE--EEEEETTTTEEEEEETTTTE----EEEEE--SSSEEEEEEECTTSEEEE--EET---------TCEE
T ss_pred cceEEECCCCE--EEEEEcCCCEEEEEECCCCe----EEEEe--cCCCceEEEEccCCEEEE--EEc---------CceE
Confidence 46678876666 99999999999999987653 22333 334999999954445544 432 2555
Q ss_pred EEccCCCcccccccc-----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 332 KAGMHGENRSPLVTK-----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 332 ~~~~dG~~~~~l~~~-----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
+.+......+++... ++..|+.+++|++ ++||++|.......
T Consensus 64 ~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~-------------------------------- 110 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGAS-------------------------------- 110 (246)
T ss_dssp EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTT--------------------------------
T ss_pred EEecCCCcEEEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccc--------------------------------
Confidence 667665555555543 6788999999976 44666664321000
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-----cE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-----RS 481 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-----~~ 481 (841)
. ...++|++++.+|+. +.+ ..++..|+||+++|.++.||+++.. ..+|++++++... ++
T Consensus 111 --~----------~~~g~v~~~~~~~~~-~~~-~~~~~~pNGi~~s~dg~~lyv~ds~--~~~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 111 --G----------IDPGSVYRIDPDGKV-TVV-ADGLGFPNGIAFSPDGKTLYVADSF--NGRIWRFDLDADGGELSNRR 174 (246)
T ss_dssp --C----------GGSEEEEEEETTSEE-EEE-EEEESSEEEEEEETTSSEEEEEETT--TTEEEEEEEETTTCCEEEEE
T ss_pred --c----------ccccceEEECCCCeE-EEE-ecCcccccceEECCcchheeecccc--cceeEEEeccccccceeeee
Confidence 0 000457777777443 233 3457899999999998899999988 7899999997433 34
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe---cCeEEEEe
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF---ENHVYWTD 555 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~---~~~lY~td 555 (841)
++... ......|.||++|. .++||+++...++|.+++++|.....+... ..+|..+++- .+.||+|.
T Consensus 175 ~~~~~---~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 175 VFIDF---PGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIELP---VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEE----SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE-S---SSSEEEEEEESTTSSEEEEEE
T ss_pred eEEEc---CCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcCC---CCCEEEEEEECCCCCEEEEEe
Confidence 44442 12224699999995 789999999999999999999877777644 4589999994 37899985
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.73 E-value=6e-16 Score=162.33 Aligned_cols=204 Identities=21% Similarity=0.250 Sum_probs=151.3
Q ss_pred CCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc
Q psy14257 350 WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 350 ~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
+|+|+++|..++.|||+|...++|+++++++...+++.... +.|+ +++...+.||+++.. .+.+.+
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~------~~G~------~~~~~~g~l~v~~~~--~~~~~d 66 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG------PNGM------AFDRPDGRLYVADSG--GIAVVD 66 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS------EEEE------EEECTTSEEEEEETT--CEEEEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC------CceE------EEEccCCEEEEEEcC--ceEEEe
Confidence 47899999999999999999999999999998766543222 1111 233334999999964 455558
Q ss_pred cCCceEEEEecC-----CCCCceeEEEcCCCCeEEEEecCCCC------CeEEEecCCCCCcEEEEEecccCCCCCCcee
Q psy14257 430 LSGQFRRTLIAG-----DMESPRAIALDPRFGLLFWTDWDSKA------PRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 430 ~~G~~~~~l~~~-----~l~~P~giavd~~~g~Ly~td~~~~~------~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g 498 (841)
+.....+++... .+..|+++++|+. |.||+|+.+... ++|+|.+.+|+ .+.+.. .+..|+|
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~------~~~~pNG 138 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVAD------GLGFPNG 138 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEE------EESSEEE
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEec------Ccccccc
Confidence 776655555543 5788999999986 889999865321 67999999944 333333 5789999
Q ss_pred EEEeccCCEEEEEeCCCCeEEEEEcCC--C---eeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 499 LTLDYQLTRIYWIDAKSDSIHTVTYDG--K---DHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~~~I~~~~~dG--~---~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
|+++++++.||++|...++|++++++. . .++++.........|.||+++ +|+||++.+..++|.++++. |+..
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 999999999999999999999999973 2 344554443333469999996 59999999999999999987 7766
Q ss_pred EEEe
Q psy14257 573 TLIQ 576 (841)
Q Consensus 573 ~~i~ 576 (841)
..+.
T Consensus 218 ~~i~ 221 (246)
T PF08450_consen 218 REIE 221 (246)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6554
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.6e-10 Score=127.23 Aligned_cols=288 Identities=16% Similarity=0.148 Sum_probs=181.3
Q ss_pred CeEEEEEec--CCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC--ccccccc--c
Q psy14257 273 DKIYNATLI--GNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE--NRSPLVT--K 346 (841)
Q Consensus 273 ~~I~~~~~~--~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~--~~~~l~~--~ 346 (841)
+.|+++.++ .+.+..... ......|.-|++++.++.+|. +.... ...+.|..+..+.. .+..+.. .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~--~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~~ 84 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDGRRLYV--VNEGS----GDSGGVSSYRIDPDTGTLTLLNSVPS 84 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTSSEEEE--EETTS----STTTEEEEEEEETTTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCCCEEEE--EEccc----cCCCCEEEEEECCCcceeEEeeeecc
Confidence 567777663 333222222 234668999999986655554 44321 14567777766543 3333332 2
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCC--ccEEE--EeeeeecCCC-ccccCCCCCCccccccceEEEEecC
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS--ERTVS--FNLEVLGSDS-RVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~--~~~~~--~~~~~~~~~~-~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.-..|--|++|+.++.||++.+..+.|..++++.. -.... +.....+... .-..+..+.+.++..++.||++|.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 45678899999999999999999999999988753 22221 1111111111 0011111123456677899999999
Q ss_pred CCcEEEEccCCce--E---EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCc-EEEEEecccC---C
Q psy14257 422 LDQIEVAKLSGQF--R---RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHR-SVIVRVDLLT---S 491 (841)
Q Consensus 422 ~~~I~v~~~~G~~--~---~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~-~~i~~~~~~~---~ 491 (841)
.++|.+++++... . ..+....-..||.|+++|...++|++... .+.|..++++ .... +.+......+ .
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~--s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL--SNTVSVFDYDPSDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESCETTSC
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC--CCcEEEEeecccCCceeEEEEeeecccccc
Confidence 9999999997543 2 22222334689999999999999999976 6788888887 2222 2222211111 1
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC--eeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEE--e
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK--DHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRA--N 565 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~--~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~--~ 565 (841)
....|.+|++++++++||+++...+.|..++++.. ..+.+.........|.++++ .+.+||+++..++.|..+ +
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 22379999999999999999999999999998542 33332221112356999999 568999999998887644 5
Q ss_pred ccCCc
Q psy14257 566 KWNGS 570 (841)
Q Consensus 566 ~~~g~ 570 (841)
..+|.
T Consensus 323 ~~tG~ 327 (345)
T PF10282_consen 323 PDTGK 327 (345)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 55655
No 10
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=3.3e-10 Score=124.39 Aligned_cols=290 Identities=12% Similarity=0.132 Sum_probs=184.4
Q ss_pred ceEEEEecCCCcEEEEccC--CceE--EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLS--GQFR--RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~--G~~~--~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
..+|++....+.|.+++++ |+.. .++ .....|..|+++|...+||++.+. ...|..++++...........
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~- 76 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAES- 76 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECCCCceEEeeee-
Confidence 4689998888999999985 4322 222 123679999999998999999875 567766666533332222210
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCCCCeEEEE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~~~~i~~~ 564 (841)
.....|.+|++++.+++||.+....+.|..++++ |.....+... ....+|.++++. +.++|+++...+.|..+
T Consensus 77 --~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 77 --PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred --cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 2234799999999999999999888899988876 3222222111 124578888875 46899999888877666
Q ss_pred eccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC
Q psy14257 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP 644 (841)
Q Consensus 565 ~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~ 644 (841)
+..+..... +. ..
T Consensus 154 d~~~~g~l~------------------------------------~~-------------------------------~~ 166 (330)
T PRK11028 154 TLSDDGHLV------------------------------------AQ-------------------------------EP 166 (330)
T ss_pred EECCCCccc------------------------------------cc-------------------------------CC
Confidence 542211000 00 00
Q ss_pred CeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEccc--Cceeeeeeeeeeeecccccccc
Q psy14257 645 REIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVG--GQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 645 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
..+. + +. -..|..++|+|..+.+|+++...++|...+++. ...+. +..+
T Consensus 167 ~~~~-~-------------~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~-~~~~------------ 217 (330)
T PRK11028 167 AEVT-T-------------VE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC-VQTL------------ 217 (330)
T ss_pred Ccee-c-------------CC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE-EEEE------------
Confidence 0000 0 00 123567888899999999998889998888863 22111 1000
Q ss_pred cccCceEEEEeeC---CCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc--ceEEEEcCCCCCCCcCCCceEEEEe
Q psy14257 723 SIVGGQIQLVVDA---GISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE--YQTTILSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 723 ~~~~~~~~~i~~~---~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~--~~~~~~~~~~~~~~~l~~p~~iavd 797 (841)
..+.. +-..|.+|++++.++.||.+ +...+.|.+++++-. ..+.+..- . ....|++|+++
T Consensus 218 --------~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~~~~~~~~~-~----~~~~p~~~~~~ 282 (330)
T PRK11028 218 --------DMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGSVLSFEGHQ-P----TETQPRGFNID 282 (330)
T ss_pred --------ecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCCeEEEeEEE-e----ccccCCceEEC
Confidence 00001 11245679999999999999 567789999988532 22222221 0 02589999999
Q ss_pred CCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
|...+||.+..+.+ +|....+|..
T Consensus 283 ~dg~~l~va~~~~~--~v~v~~~~~~ 306 (330)
T PRK11028 283 HSGKYLIAAGQKSH--HISVYEIDGE 306 (330)
T ss_pred CCCCEEEEEEccCC--cEEEEEEcCC
Confidence 99999999998664 6777776644
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=1.2e-10 Score=127.84 Aligned_cols=284 Identities=12% Similarity=0.135 Sum_probs=179.1
Q ss_pred eEEEecCCCeEEEEEecC-CcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc-ccc
Q psy14257 265 VFWTDVIDDKIYNATLIG-NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN-RSP 342 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~-~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~-~~~ 342 (841)
+|.++...+.|...++.. |.+...++ +. ....|..+++++.++.+|+ +.+ ..++|..++.++.. ...
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-~~-~~~~~~~l~~spd~~~lyv--~~~-------~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-VD-VPGQVQPMVISPDKRHLYV--GVR-------PEFRVLSYRIADDGALTF 72 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-Ee-cCCCCccEEECCCCCEEEE--EEC-------CCCcEEEEEECCCCceEE
Confidence 889988888898888853 33211122 22 2357899999987766665 332 23578766665321 111
Q ss_pred ccc-cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec--CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe
Q psy14257 343 LVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD--GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 343 l~~-~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld--G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD 419 (841)
+.. .....|.+|++++++++||.+....+.|..++++ |...+.+.... +.+.....+++..++.||+++
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEee
Confidence 111 1234799999999999999999988999888886 32222221110 111122234566668999999
Q ss_pred cCCCcEEEEccCCce-EE-----EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC--CCcEEEEEecccCC
Q psy14257 420 SNLDQIEVAKLSGQF-RR-----TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG--EHRSVIVRVDLLTS 491 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~-~~-----~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG--~~~~~i~~~~~~~~ 491 (841)
...++|.+++++... .. .+....-..|++++++|...+||+++.. .++|...+++. ...+.+......+.
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 999999999986421 10 0111112579999999999999999976 57777777752 22233322111111
Q ss_pred ---CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC--CCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEE
Q psy14257 492 ---RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD--GKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 492 ---~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d--G~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~ 564 (841)
.-.+|.++++++.+++||+++...+.|..++++ +...+.+.... ....|.++++ .+.+||++....+.|..+
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 224667899999999999998888889888874 33333222211 1246788887 467999999877766544
Q ss_pred --eccCCc
Q psy14257 565 --NKWNGS 570 (841)
Q Consensus 565 --~~~~g~ 570 (841)
+..+|.
T Consensus 302 ~~~~~~g~ 309 (330)
T PRK11028 302 EIDGETGL 309 (330)
T ss_pred EEcCCCCc
Confidence 444443
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=1e-09 Score=120.95 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=181.9
Q ss_pred CcEEEEccC---CceEEEEecCCCCCceeEEEcCCCCeEEEEecCC-CCCeEEEecCCCC-Cc-EEEEEecccCCCCCCc
Q psy14257 423 DQIEVAKLS---GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS-KAPRIERCSMSGE-HR-SVIVRVDLLTSRGAWP 496 (841)
Q Consensus 423 ~~I~v~~~~---G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~-~~-~~i~~~~~~~~~~~~P 496 (841)
+.|.++++| |+....-.......|.-|+++|.+++||.+.... ..+.|..+.++.. .. +.+... ......|
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~---~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV---PSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE---EESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee---ccCCCCc
Confidence 667777773 2222211122457899999999999999999753 3678888877654 33 333221 1256789
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCC--CeeEE--EEcC--------CCCCCcceEEEEe--cCeEEEEeCCCCeEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDG--KDHHV--VLSN--------HDSLTHPFAIALF--ENHVYWTDWRTNSVI 562 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG--~~~~~--i~~~--------~~~l~~P~gla~~--~~~lY~td~~~~~i~ 562 (841)
..|++|+.++.||+++...+.|..++++. ..... +... .....||..+.+. +.+||++|.+..+|.
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVY 169 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEE
Confidence 99999999999999999999998888864 32222 1210 1234688888884 468999998888776
Q ss_pred EEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee
Q psy14257 563 RANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS 642 (841)
Q Consensus 563 ~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~ 642 (841)
.++....... |..
T Consensus 170 ~~~~~~~~~~---------------------------------------------------l~~---------------- 182 (345)
T PF10282_consen 170 VYDIDDDTGK---------------------------------------------------LTP---------------- 182 (345)
T ss_dssp EEEE-TTS-T---------------------------------------------------EEE----------------
T ss_pred EEEEeCCCce---------------------------------------------------EEE----------------
Confidence 6653211100 000
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEccc--Cceeeeeeeeeeeecccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVG--GQIQLVVDAVFEFYLTPLSK 720 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 720 (841)
.. .+.++.-..|..++|++..+.+|+++..+++|..++++. ...+.
T Consensus 183 ----~~-------------~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------------- 230 (345)
T PF10282_consen 183 ----VD-------------SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--------------- 230 (345)
T ss_dssp ----EE-------------EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE---------------
T ss_pred ----ee-------------ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE---------------
Confidence 00 011222245788999999999999999999999998882 22111
Q ss_pred cccccCceEEEEee-----CCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc--ceEEE--E-cCCCCCCCcCCC
Q psy14257 721 RSSIVGGQIQLVVD-----AGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE--YQTTI--L-SNESNDTSTLSK 790 (841)
Q Consensus 721 ~~~~~~~~~~~i~~-----~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~--~~~~~--~-~~~~~~~~~l~~ 790 (841)
.+.+-. .+...|.+|+|++.++.||++ +...+.|.+++++.. .-+.+ + .. ...
T Consensus 231 --------~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs--nr~~~sI~vf~~d~~~g~l~~~~~~~~~-------G~~ 293 (345)
T PF10282_consen 231 --------IQTISTLPEGFTGENAPAEIAISPDGRFLYVS--NRGSNSISVFDLDPATGTLTLVQTVPTG-------GKF 293 (345)
T ss_dssp --------EEEEESCETTSCSSSSEEEEEE-TTSSEEEEE--ECTTTEEEEEEECTTTTTEEEEEEEEES-------SSS
T ss_pred --------EEEeeeccccccccCCceeEEEecCCCEEEEE--eccCCEEEEEEEecCCCceEEEEEEeCC-------CCC
Confidence 111110 112368999999999999999 568899999999653 11111 1 12 467
Q ss_pred ceEEEEeCCCCeEEEEecCCCcceEEEEecCC
Q psy14257 791 ISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 791 p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG 822 (841)
|++|+++|...+||.+....+ +|....+|.
T Consensus 294 Pr~~~~s~~g~~l~Va~~~s~--~v~vf~~d~ 323 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQDSN--TVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTT--EEEEEEEET
T ss_pred ccEEEEeCCCCEEEEEecCCC--eEEEEEEeC
Confidence 999999999999999999885 577766653
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.6e-11 Score=130.59 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=147.1
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.+......+..|.++|.+++.|||+|...++|.+.++.....+++.....+.....+ -..+.|..++.+
T Consensus 18 ~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~-----------d~~g~Lv~~~~g 86 (307)
T COG3386 18 TLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALI-----------DAGGRLIACEHG 86 (307)
T ss_pred eEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceee-----------cCCCeEEEEccc
Confidence 344557788999999999999999999999999999986555555433322111110 012666666654
Q ss_pred CCcEEEEccCCceEEEEec----CCCCCceeEEEcCCCCeEEEEecC---------CCCCeEEEecCCCCCcEEEEEecc
Q psy14257 422 LDQIEVAKLSGQFRRTLIA----GDMESPRAIALDPRFGLLFWTDWD---------SKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~----~~l~~P~giavd~~~g~Ly~td~~---------~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
...+.. -.|..++.+.. ..+.+|+.+.++|. |.+|+++.+ ...+.|||++.+|...+.+.
T Consensus 87 ~~~~~~--~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---- 159 (307)
T COG3386 87 VRLLDP--DTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---- 159 (307)
T ss_pred cEEEec--cCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec----
Confidence 333322 22333233322 12578999999987 889999877 24568999999766555553
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC---CC--eeEEEEcCCCCCCcceEEEEec-CeEE-EEeCCCCeE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD---GK--DHHVVLSNHDSLTHPFAIALFE-NHVY-WTDWRTNSV 561 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d---G~--~~~~i~~~~~~l~~P~gla~~~-~~lY-~td~~~~~i 561 (841)
..+..||||+++++++.||++|+..++|++++++ |. .++..+.....-..|.|++++. |+|| ++-|...+|
T Consensus 160 --~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 160 --DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred --CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 3588999999999999999999999999999988 31 2222222211235799999965 6777 555666699
Q ss_pred EEEeccCCcceEEEe
Q psy14257 562 IRANKWNGSDVTLIQ 576 (841)
Q Consensus 562 ~~~~~~~g~~~~~i~ 576 (841)
.+.++. |+....+.
T Consensus 238 ~~~~pd-G~l~~~i~ 251 (307)
T COG3386 238 VRFNPD-GKLLGEIK 251 (307)
T ss_pred EEECCC-CcEEEEEE
Confidence 999987 77665544
No 14
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=1.7e-10 Score=122.68 Aligned_cols=238 Identities=19% Similarity=0.220 Sum_probs=151.9
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
..+--|+.+.+. |||+|+..++|++.++..|. . .++...-..+.++.+|. .+.++-++- .+
T Consensus 27 gEgP~w~~~~~~--L~w~DI~~~~i~r~~~~~g~---~-~~~~~p~~~~~~~~~d~---~g~Lv~~~~----------g~ 87 (307)
T COG3386 27 GEGPVWDPDRGA--LLWVDILGGRIHRLDPETGK---K-RVFPSPGGFSSGALIDA---GGRLIACEH----------GV 87 (307)
T ss_pred ccCccCcCCCCE--EEEEeCCCCeEEEecCCcCc---e-EEEECCCCcccceeecC---CCeEEEEcc----------cc
Confidence 345567777666 99999999999999887553 2 23333333466777773 333332221 33
Q ss_pred EEEccC-CCccccccc----cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 331 EKAGMH-GENRSPLVT----KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 331 ~~~~~d-G~~~~~l~~----~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
.+.+.+ |..++.+.. .+..+||.+.+|++ +.+|+.|..... .+..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~------~~~~----------------------- 137 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFD------LGKS----------------------- 137 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccc------cCcc-----------------------
Confidence 333323 333233322 26789999999987 788888875410 0000
Q ss_pred CccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CC--Cc
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GE--HR 480 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~--~~ 480 (841)
.....+++++++.+|...+ ++...+..|+|||++|++..||++|.. ..+|+|+.++ |. ++
T Consensus 138 ------------~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~--~~~i~r~~~d~~~g~~~~~ 202 (307)
T COG3386 138 ------------EERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTP--ANRIHRYDLDPATGPIGGR 202 (307)
T ss_pred ------------ccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCC--CCeEEEEecCcccCccCCc
Confidence 0011234444554444433 444558899999999999999999987 7899999997 32 22
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEE-EeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec---CeEEEEeC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYW-IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE---NHVYWTDW 556 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw-~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~---~~lY~td~ 556 (841)
...+... ..-..|.|+++| .++.||. +-....+|.+++++|.....+.-. ...|..+++-+ +.||+|..
T Consensus 203 ~~~~~~~---~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP---~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 203 RGFVDFD---EEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP---VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEEEcc---CCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECC---CCCCccceEeCCCcCEEEEEec
Confidence 2233210 233689999999 5788884 444445999999999888777643 25677788765 89999986
Q ss_pred CCC
Q psy14257 557 RTN 559 (841)
Q Consensus 557 ~~~ 559 (841)
..+
T Consensus 276 ~~~ 278 (307)
T COG3386 276 RSG 278 (307)
T ss_pred CCC
Confidence 653
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.31 E-value=5.6e-10 Score=123.87 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=160.3
Q ss_pred EEEEecc--ccceeeecccccCCcceeEEEecC-----------C-CeEEEEEecCC-cccceEEEEeCCCCCccceEEe
Q psy14257 241 VIALISS--LKNTIALDFYYTPTANMVFWTDVI-----------D-DKIYNATLIGN-SLSNIDVVVQTGLSTAEGLAVD 305 (841)
Q Consensus 241 ~~~l~~~--~~~~~avd~~~~~~~~~lyw~d~~-----------~-~~I~~~~~~~~-~~~~~~~~~~~~l~~p~giavD 305 (841)
++.++.. +.++++|.||.+ ++ ||+++.. . ++|++..-.++ ......+++..++..|.||++.
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~~-G~--l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDER-GR--LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEECCCccCCCceeeECCC-CC--EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 4445543 788999999876 66 9999742 2 38888764322 2223446778889999999997
Q ss_pred eecCceeEEEeeecCCCCCCCCCCEEEE-ccCCC-----cccccccc-------CcCCCceEEEEccCCEEEEEeCCCCe
Q psy14257 306 WIGKNLYMFWAFWSLSPSNSSDGGIEKA-GMHGE-----NRSPLVTK-------NIQWPSSLVIDYNQDILYWCDSHLNT 372 (841)
Q Consensus 306 ~~~~~~y~~~td~~~~~~~~~~~~I~~~-~~dG~-----~~~~l~~~-------~~~~P~glavD~~~~~lYwaD~~~~~ 372 (841)
+.+ +|+ ++ .++|.++ +.+|. .+++++.. ..+.|++|+++++ ++||+++.....
T Consensus 81 ~~G--lyV--~~---------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~~~~ 146 (367)
T TIGR02604 81 VGG--VYV--AT---------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGNTLA 146 (367)
T ss_pred cCC--EEE--eC---------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEecccCCC
Confidence 533 555 32 2368777 44442 22233321 1355889999975 689998864311
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
-.. ...+. .+ .. .....+.|.+++++|+..+++ ..++.+|.||++|
T Consensus 147 ~~~-~~~~~------------~~-----------------~~---~~~~~g~i~r~~pdg~~~e~~-a~G~rnp~Gl~~d 192 (367)
T TIGR02604 147 SKV-TRPGT------------SD-----------------ES---RQGLGGGLFRYNPDGGKLRVV-AHGFQNPYGHSVD 192 (367)
T ss_pred cee-ccCCC------------cc-----------------Cc---ccccCceEEEEecCCCeEEEE-ecCcCCCccceEC
Confidence 000 00000 00 00 001246788999998877654 4679999999999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCC--C----------CCc---------EE-----------EEEecccCCCCCCceeEE
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMS--G----------EHR---------SV-----------IVRVDLLTSRGAWPNGLT 500 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ld--G----------~~~---------~~-----------i~~~~~~~~~~~~P~gla 500 (841)
+ .|.||++|.+ .+...++..- | ... .. +............|.|++
T Consensus 193 ~-~G~l~~tdn~--~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~ 269 (367)
T TIGR02604 193 S-WGDVFFCDND--DPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIA 269 (367)
T ss_pred C-CCCEEEEccC--CCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEE
Confidence 8 5899999865 3333333321 1 000 00 000000001223689999
Q ss_pred Ee-------ccCCEEEEEeCCCCeEEEEEcC--CCee----EEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeE
Q psy14257 501 LD-------YQLTRIYWIDAKSDSIHTVTYD--GKDH----HVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSV 561 (841)
Q Consensus 501 lD-------~~~~~LYw~d~~~~~I~~~~~d--G~~~----~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i 561 (841)
+- ...+.||+++...++|.++.++ |... ..++.......+|..|++ .+|.||++||....|
T Consensus 270 ~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i 344 (367)
T TIGR02604 270 FYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGI 344 (367)
T ss_pred EeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEeccCcc
Confidence 86 3458999999999999999876 4322 123333223357888888 478999999876443
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=7e-09 Score=115.54 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=176.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.|.++++++.+.++|+.-.. ...|...+..-.........+...|.|++++..+.++|+.+...+.|..++
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~---------~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSG---------SNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeec---------CceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEc
Confidence 89999999888777775321 113444333311122222334478999999999999999999999999999
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~ 455 (841)
.+............ . ...+++++.++.+|+++. .+++|.+++.........+..+ ..|.+++++|..
T Consensus 103 ~~~~~~~~~~~vG~--~--------P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g 171 (381)
T COG3391 103 TATNTVLGSIPVGL--G--------PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDG 171 (381)
T ss_pred CcccceeeEeeecc--C--------CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC-CCcceEEECCCC
Confidence 54443333222221 1 123478888999999999 4789999988755443334333 378999999999
Q ss_pred CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 456 g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
.++|+++.. .+.|...+..+..... ............|.++++++.+.++|+++..+ +.+.+++...........
T Consensus 172 ~~vyv~~~~--~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 172 NKVYVTNSD--DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CeEEEEecC--CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 999999966 7889999877655442 11100114677899999999999999999887 589999888766655422
Q ss_pred CCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 534 NHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 534 ~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..+.+ .|.++++ .+.++|+++...+.+..++..+.....
T Consensus 249 ~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 249 PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 33345 7888888 468899998888888888765544433
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.2e-08 Score=102.80 Aligned_cols=294 Identities=17% Similarity=0.217 Sum_probs=188.8
Q ss_pred eEEEecC---CCeEEEEEecC--CcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-
Q psy14257 265 VFWTDVI---DDKIYNATLIG--NSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE- 338 (841)
Q Consensus 265 lyw~d~~---~~~I~~~~~~~--~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~- 338 (841)
+|+-... ...|++..++. |.+...+ +...+.+|.-|++++..+.||...-+ ...++|..+..|..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~--~v~~~~nptyl~~~~~~~~LY~v~~~-------~~~ggvaay~iD~~~ 75 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQ--LVAELGNPTYLAVNPDQRHLYVVNEP-------GEEGGVAAYRIDPDD 75 (346)
T ss_pred EEEeeecccCCCceEEEEEeCcccccchhh--hccccCCCceEEECCCCCEEEEEEec-------CCcCcEEEEEEcCCC
Confidence 5554443 56788887763 2322222 33457789999999988888875432 22567777776653
Q ss_pred cccccccc---CcCCCceEEEEccCCEEEEEeCCCCeEEEEEe--cCCccEEEEeeeeecCC--CccccCCCCCCccccc
Q psy14257 339 NRSPLVTK---NIQWPSSLVIDYNQDILYWCDSHLNTVESVRV--DGSERTVSFNLEVLGSD--SRVGIPNCRPEDNLWI 411 (841)
Q Consensus 339 ~~~~l~~~---~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l--dG~~~~~~~~~~~~~~~--~~~~i~~~~~~avdw~ 411 (841)
.+-+++.. .-..|.-+++|.+++.||.+.+..+.|.+..+ +|.-..++-...-.++. ..-.-+.++...++..
T Consensus 76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 22333322 33445889999999999999999999988776 46544433221111110 0000111233456777
Q ss_pred cceEEEEecCCCcEEEEccC-CceEE---EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC--CcEEEEE
Q psy14257 412 GKNLYWVESNLDQIEVAKLS-GQFRR---TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE--HRSVIVR 485 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~-G~~~~---~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~--~~~~i~~ 485 (841)
++.|.++|-+.++|.+++++ |.... ..+ ..-..||-|+++|...+.|....- +++|.....++. ..+.+-.
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL--~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNEL--NSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEecc--CCEEEEEEEcCCCceEEEeee
Confidence 88999999999999999986 33221 112 223679999999999999998855 678888888764 2222222
Q ss_pred ecccCC---CCCCceeEEEeccCCEEEEEeCCCCeEEEE--EcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCC
Q psy14257 486 VDLLTS---RGAWPNGLTLDYQLTRIYWIDAKSDSIHTV--TYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRT 558 (841)
Q Consensus 486 ~~~~~~---~~~~P~glalD~~~~~LYw~d~~~~~I~~~--~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~ 558 (841)
....+. +-.+-..|.|.+.++.||.++-+.+.|..+ +.+|+....+.........|.++.+ .+++|+++...+
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 111122 334566788999999999999888876665 5566656555444333445777776 568899998776
Q ss_pred Ce--EEEEeccCCc
Q psy14257 559 NS--VIRANKWNGS 570 (841)
Q Consensus 559 ~~--i~~~~~~~g~ 570 (841)
.. |+++++.+|.
T Consensus 313 d~i~vf~~d~~TG~ 326 (346)
T COG2706 313 DNITVFERDKETGR 326 (346)
T ss_pred CcEEEEEEcCCCce
Confidence 65 4577777775
No 18
>KOG4659|consensus
Probab=99.19 E-value=9.6e-09 Score=119.68 Aligned_cols=225 Identities=21% Similarity=0.297 Sum_probs=147.6
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
|-.|..+|..+.| -+|+ -|. +-|.|+..||+....+-. +....--=||+|+..+.||++|+..++|
T Consensus 364 L~aPvala~a~DG-Sl~V--GDf---------NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv 431 (1899)
T KOG4659|consen 364 LFAPVALAYAPDG-SLIV--GDF---------NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQV 431 (1899)
T ss_pred eeceeeEEEcCCC-cEEE--ccc---------hheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceE
Confidence 3357777776543 4443 332 379999999986655432 2334445699999999999999999999
Q ss_pred EEEE-ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 374 ESVR-VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 374 ~~~~-ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
+|+. +.++..+ .+.+++..++..-+|.. +.+ =||.. .....|..|+|||||
T Consensus 432 ~rv~sl~~~d~~--~N~evvaG~Ge~Clp~d----------------------esC-GDGal---A~dA~L~~PkGIa~d 483 (1899)
T KOG4659|consen 432 WRVSSLEPQDSR--NNYEVVAGDGEVCLPAD----------------------ESC-GDGAL---AQDAQLIFPKGIAFD 483 (1899)
T ss_pred EEeccCCccccc--cCeeEEeccCcCccccc----------------------ccc-Ccchh---cccceeccCCceeEc
Confidence 9984 4443221 11122222221111100 000 01211 112347889999999
Q ss_pred CCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-------------ccCCCCCCceeEEEeccCCEEEEEeCCCCeEE
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-------------LLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIH 519 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-------------~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~ 519 (841)
. .|.||++| ...|.+++-+|--.+.+.... +....+.||+.|||||-.+.||+.| ++.|.
T Consensus 484 k-~g~lYfaD----~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvl 556 (1899)
T KOG4659|consen 484 K-MGNLYFAD----GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVL 556 (1899)
T ss_pred c-CCcEEEec----ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEE
Confidence 5 59999999 458888888876555553311 1123678999999999999999999 57899
Q ss_pred EEEcCCCeeEEEEcC------------------CCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccC
Q psy14257 520 TVTYDGKDHHVVLSN------------------HDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 520 ~~~~dG~~~~~i~~~------------------~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~ 568 (841)
+++.++.-+ ++... +..+..|.+|++ ..|-||+++....+|-|+.+.+
T Consensus 557 rit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 557 RITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLS 623 (1899)
T ss_pred EEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEec
Confidence 999888755 33222 122344788998 6799999999998888887654
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=1.6e-08 Score=112.61 Aligned_cols=268 Identities=15% Similarity=0.164 Sum_probs=182.0
Q ss_pred ceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCC
Q psy14257 250 NTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGG 329 (841)
Q Consensus 250 ~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~ 329 (841)
.+..+.+...... +|+++...+.+..++.... ..+.....+...|.|+++.+.+.++|+.-. ..+.
T Consensus 32 ~~~~v~~~~~g~~--~~v~~~~~~~~~~~~~~~n---~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~---------~~~~ 97 (381)
T COG3391 32 GPGGVAVNPDGTQ--VYVANSGSNDVSVIDATSN---TVTQSLSVGGVYPAGVAVNPAGNKVYVTTG---------DSNT 97 (381)
T ss_pred CCceeEEcCccCE--EEEEeecCceeeecccccc---eeeeeccCCCccccceeeCCCCCeEEEecC---------CCCe
Confidence 4555555554334 9999888776655543211 222223444478999999999988988532 3568
Q ss_pred EEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCc
Q psy14257 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPED 407 (841)
Q Consensus 330 I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~a 407 (841)
|...+.........+..+. .|.++++|++++.+|+++. .+++|..++.............. .+ . .++
T Consensus 98 v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~--~P--~------~~a 166 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN--TP--T------GVA 166 (381)
T ss_pred EEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC--Cc--c------eEE
Confidence 8888855443333332222 8999999999999999999 47899998887665544422221 11 1 236
Q ss_pred cccccceEEEEecCCCcEEEEccCCceEEE-E---ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 408 NLWIGKNLYWVESNLDQIEVAKLSGQFRRT-L---IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 408 vdw~~~~LY~tD~~~~~I~v~~~~G~~~~~-l---~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
++..+..+|+++...++|.+++.++..... - .......|.++++++...++|+++.......+.+.+.........
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 777788999999999999999988776543 0 112357899999999999999999873336888888765544433
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC-CCCCcceEEEE
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH-DSLTHPFAIAL 546 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~-~~l~~P~gla~ 546 (841)
.. ....+ +|.++++++.+..+|+++...+.+..++.....+....... .....|..+++
T Consensus 247 ~~---~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 247 DL---PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred cc---ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 11 01455 89999999999999999998899999998776555443321 11223555554
No 20
>KOG4659|consensus
Probab=99.14 E-value=8.1e-09 Score=120.30 Aligned_cols=338 Identities=17% Similarity=0.186 Sum_probs=203.8
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecC-CCCCcEEEEE---ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSM-SGEHRSVIVR---VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~---~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
--.||.--.+++++|.++ .++|....| ||-.|.+--. .......+..|..||.-+ .|.||+-|. +.|++
T Consensus 316 ~~~gIl~kGnG~n~~it~----~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDf--NyIRR 388 (1899)
T KOG4659|consen 316 IVNGILEKGNGGNRLITE----EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDF--NYIRR 388 (1899)
T ss_pred cccCeEEecCCcceEeec----CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccc--hheee
Confidence 345666666678899988 456555555 6655433211 000113677899999985 689999995 78999
Q ss_pred EEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEEEeccCCcce----EEEecccCCCceeccCCcccCC
Q psy14257 521 VTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDV----TLIQRTLTQPFIYVNGVVKKSP 594 (841)
Q Consensus 521 ~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~~~~~~g~~~----~~i~~~~~~p~~~h~qp~~~n~ 594 (841)
+..||+-+.++--+.....|-+-||+ -+|.||++|..++.|+|+.-..+++. .++.....+ --|....
T Consensus 389 I~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~-----Clp~des- 462 (1899)
T KOG4659|consen 389 ISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEV-----CLPADES- 462 (1899)
T ss_pred ecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcC-----ccccccc-
Confidence 99999977766444333457788888 47999999999999999976554332 222211100 0011111
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCC-------CccccceeecC-
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHP-------YYHTIPTISIP- 666 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~-------~~~~~~~~~~~- 666 (841)
|.. |+ + ...++-.-|.|.... ..-+|.+++...||.|+-++- .+..-++++-.
T Consensus 463 CGD--Ga------l--A~dA~L~~PkGIa~d---------k~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~ 523 (1899)
T KOG4659|consen 463 CGD--GA------L--AQDAQLIFPKGIAFD---------KMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQ 523 (1899)
T ss_pred cCc--ch------h--cccceeccCCceeEc---------cCCcEEEecccEEEEeccCceEEEeccCCCCccCcccccc
Confidence 222 10 0 001222223332222 235688899999999986532 11111222211
Q ss_pred -------CCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccc-ccccCceEEEEeeCCCC
Q psy14257 667 -------QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKR-SSIVGGQIQLVVDAGIS 738 (841)
Q Consensus 667 -------~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 738 (841)
.+.=|..|++||..+.+|+.| ++-|.|+..++... ++ .-.|+-=. +.+..+......-+.+.
T Consensus 524 ~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~--Ii------~GrP~hC~~a~~t~~~skla~H~tl~ 593 (1899)
T KOG4659|consen 524 ITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR--II------LGRPTHCDLANATSSASKLADHRTLL 593 (1899)
T ss_pred ccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE--EE------cCCccccccCCCchhhhhhhhhhhhh
Confidence 234588999999999999999 79999999887551 11 11111000 01122222222234566
Q ss_pred CcceeEEeecCCcEEEEecCC-CCCeEEEEecCCcceEEEEc-------------------CCCCCCCcCCCceEEEEeC
Q psy14257 739 HPSGLAIDWIAQNMFIAVSSP-TQSKIVVCNLEGEYQTTILS-------------------NESNDTSTLSKISSIAVWP 798 (841)
Q Consensus 739 ~p~glAvD~~~~~LYw~~~~~-~~~~I~v~~l~g~~~~~~~~-------------------~~~~~~~~l~~p~~iavd~ 798 (841)
.++.|||... +.||++++|. .-++|+++..||+.- ++.. +.....+.|..|.++||.|
T Consensus 594 ~~r~Iavg~~-G~lyvaEsD~rriNrvr~~~tdg~i~-ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP 671 (1899)
T KOG4659|consen 594 IQRDIAVGTD-GALYVAESDGRRINRVRKLSTDGTIS-ILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP 671 (1899)
T ss_pred hhhceeecCC-ceEEEEeccchhhhheEEeccCceEE-EecCCCCCCCcccccCCccccccchhhhccccCCcceEEECC
Confidence 7899999966 5899998765 335677777888532 1111 1133445688999999999
Q ss_pred CCCeEEEEecCCCcceEE-----EEecCCCceEEEe
Q psy14257 799 VKGKMFWSNVTKQVVTIE-----MAFMDGTKRETVV 829 (841)
Q Consensus 799 ~~g~lyw~d~~~~~~~I~-----~~~~dG~~~~~l~ 829 (841)
. |-+|.+|.++- ||. ++.+||++--.+.
T Consensus 672 d-g~v~IAD~gN~--rIr~Vs~~~~~~~~sr~YEi~ 704 (1899)
T KOG4659|consen 672 D-GDVIIADSGNS--RIRKVSARMAKYDGSRTYEIT 704 (1899)
T ss_pred C-CcEEEecCCch--hhhhhhhcccccCCCceeecc
Confidence 6 99999999973 444 3456776544443
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.13 E-value=3.6e-07 Score=98.14 Aligned_cols=290 Identities=13% Similarity=0.084 Sum_probs=168.5
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+++|++....+.|.+.+++.......+.. ...|++++++|.++.||.+... ...|...+++.......+. .
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~------~ 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLP------S 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECC--CCeEEEEECCCCcEEEecc------C
Confidence 35788888888999988864333223332 3568999999988889988755 5788888876543322222 2
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cC-eEEEEeCCCCeEEEEeccCCc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-EN-HVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~-~lY~td~~~~~i~~~~~~~g~ 570 (841)
...|..+++++.++.||.+....+.|..+++........... -..|.++++. ++ .++++......+..++..+++
T Consensus 72 ~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 72 GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 234678999988888998877678999999876433222221 1246788874 34 444444333334444543332
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--cCCeEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS--RPREIR 648 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~--~~~~i~ 648 (841)
....+... .. |....+.+| ..+|+++ ....|+
T Consensus 149 ~~~~~~~~-------------~~-------------------------~~~~~~s~d--------g~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 149 IVDNVLVD-------------QR-------------------------PRFAEFTAD--------GKELWVSSEIGGTVS 182 (300)
T ss_pred EEEEEEcC-------------CC-------------------------ccEEEECCC--------CCEEEEEcCCCCEEE
Confidence 22111100 00 000011111 1122222 123344
Q ss_pred EEecCCCCccccceee--c----CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccc
Q psy14257 649 GVDLEHPYYHTIPTIS--I----PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRS 722 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~--~----~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 722 (841)
.+++..... ...++ . +....+.+++|++..+.+|++....++|..+++....
T Consensus 183 i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-------------------- 240 (300)
T TIGR03866 183 VIDVATRKV--IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-------------------- 240 (300)
T ss_pred EEEcCccee--eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc--------------------
Confidence 444432211 00000 0 0112456789999999999987667788888876433
Q ss_pred cccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeC
Q psy14257 723 SIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP 798 (841)
Q Consensus 723 ~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~ 798 (841)
....+. .-..|.+|++.+.++.||.+ ....++|.++++++.....-+.. -..|.+||+.|
T Consensus 241 ------~~~~~~-~~~~~~~~~~~~~g~~l~~~--~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~~~ 300 (300)
T TIGR03866 241 ------VLDYLL-VGQRVWQLAFTPDEKYLLTT--NGVSNDVSVIDVAALKVIKSIKV-------GRLPWGVVVRP 300 (300)
T ss_pred ------EEEEEE-eCCCcceEEECCCCCEEEEE--cCCCCeEEEEECCCCcEEEEEEc-------ccccceeEeCC
Confidence 111111 12368899999999999998 44578899999987654333332 36899999865
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.11 E-value=1.8e-07 Score=101.14 Aligned_cols=277 Identities=13% Similarity=0.164 Sum_probs=166.5
Q ss_pred eEEEecCC----CeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCc
Q psy14257 265 VFWTDVID----DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GEN 339 (841)
Q Consensus 265 lyw~d~~~----~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~ 339 (841)
+|++|... ++|++++.+.+. ....+..+ ..|+++ +.+.++.+|+.-+.+.-.........|..++.. ++.
T Consensus 15 v~V~d~~~~~~~~~v~ViD~~~~~---v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 15 VYVLDPGHFAATTQVYTIDGEAGR---VLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred EEEECCcccccCceEEEEECCCCE---EEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 88888773 788888766542 23334444 389996 898888888865533221112234578888864 444
Q ss_pred ccccccc------CcCCCceEEEEccCCEEEEEeCC-CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccccc
Q psy14257 340 RSPLVTK------NIQWPSSLVIDYNQDILYWCDSH-LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412 (841)
Q Consensus 340 ~~~l~~~------~~~~P~glavD~~~~~lYwaD~~-~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~ 412 (841)
...+... ....|..+++.+++++||+++.. .+.|-.+++.......-+.+ +.|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~--------- 149 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDC--------- 149 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCC---------
Confidence 4333321 14467799999999999999976 89999999876544332222 111
Q ss_pred ceEEEEecCCC-------cEEEEcc--CCceEE--E-EecCC----CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 413 KNLYWVESNLD-------QIEVAKL--SGQFRR--T-LIAGD----MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 413 ~~LY~tD~~~~-------~I~v~~~--~G~~~~--~-l~~~~----l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
..+|.+..... +.....+ +|+... . +.... +.+| ++.+.+|..+|... .+.|+.+++.
T Consensus 150 ~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~ 223 (352)
T TIGR02658 150 YHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLS 223 (352)
T ss_pred cEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecC
Confidence 44555432222 2222222 222111 1 11110 2566 33443344444443 3799999987
Q ss_pred CCCcEEEEEecccCC----CCCCcee---EEEeccCCEEEEEe-CC--------CCeEEEEEcCCCeeEEEEcCCCCCCc
Q psy14257 477 GEHRSVIVRVDLLTS----RGAWPNG---LTLDYQLTRIYWID-AK--------SDSIHTVTYDGKDHHVVLSNHDSLTH 540 (841)
Q Consensus 477 G~~~~~i~~~~~~~~----~~~~P~g---lalD~~~~~LYw~d-~~--------~~~I~~~~~dG~~~~~i~~~~~~l~~ 540 (841)
+.............. .-..|.| +++++.+++||++. .. .+.|..+|.....+...+.. -..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~ 300 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHE 300 (352)
T ss_pred CCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCc
Confidence 765443332111101 1234666 99999999999953 22 26899999876555443332 246
Q ss_pred ceEEEE--ecC-eEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 541 PFAIAL--FEN-HVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 541 P~gla~--~~~-~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
|.+|++ ++. .||+++..++.|..++..+++.+..+
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 889998 446 89999999999999998888777665
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.10 E-value=3.8e-08 Score=109.28 Aligned_cols=124 Identities=16% Similarity=0.293 Sum_probs=86.4
Q ss_pred CCce-EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEe-cCCCC-----CcEEEEEecccCC---CCCCceeEE
Q psy14257 431 SGQF-RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERC-SMSGE-----HRSVIVRVDLLTS---RGAWPNGLT 500 (841)
Q Consensus 431 ~G~~-~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~-~ldG~-----~~~~i~~~~~~~~---~~~~P~gla 500 (841)
+|.. ..+++.+++..|.||++.+. | ||+++ .++|+++ +.+|. .+++++. ++... ....|++|+
T Consensus 58 dG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV~~----~~~i~~~~d~~gdg~ad~~~~~l~~-~~~~~~~~~~~~~~~l~ 130 (367)
T TIGR02604 58 DGKYDKSNVFAEELSMVTGLAVAVG-G-VYVAT----PPDILFLRDKDGDDKADGEREVLLS-GFGGQINNHHHSLNSLA 130 (367)
T ss_pred CCCcceeEEeecCCCCccceeEecC-C-EEEeC----CCeEEEEeCCCCCCCCCCccEEEEE-ccCCCCCcccccccCce
Confidence 4543 23455677899999999865 6 99987 4578888 44442 3444543 22111 235589999
Q ss_pred EeccCCEEEEEeCC-------------------CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCe
Q psy14257 501 LDYQLTRIYWIDAK-------------------SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNS 560 (841)
Q Consensus 501 lD~~~~~LYw~d~~-------------------~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~ 560 (841)
+++ +++||+++.. .+.|.+++++|+..+++..+ +..|.||++. .+.+|++|.....
T Consensus 131 ~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G---~rnp~Gl~~d~~G~l~~tdn~~~~ 206 (367)
T TIGR02604 131 WGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG---FQNPYGHSVDSWGDVFFCDNDDPP 206 (367)
T ss_pred ECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC---cCCCccceECCCCCEEEEccCCCc
Confidence 996 5799998762 15799999999988877643 7899999994 6899999875544
Q ss_pred EEEEe
Q psy14257 561 VIRAN 565 (841)
Q Consensus 561 i~~~~ 565 (841)
..+++
T Consensus 207 ~~~i~ 211 (367)
T TIGR02604 207 LCRVT 211 (367)
T ss_pred eeEEc
Confidence 44443
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=5.3e-07 Score=93.83 Aligned_cols=302 Identities=11% Similarity=0.101 Sum_probs=181.4
Q ss_pred eEEEEecCC-CCCeEEEecCCCCCc-EEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCC-eeEEE
Q psy14257 457 LLFWTDWDS-KAPRIERCSMSGEHR-SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGK-DHHVV 531 (841)
Q Consensus 457 ~Ly~td~~~-~~~~I~r~~ldG~~~-~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~-~~~~i 531 (841)
.+|+..... ....|+++.+|.... ..+... ...+..|+-|++++.+++||.+... .+.|.++..|.. .+-++
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~---v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ 80 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQL---VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF 80 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhh---ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence 466665431 256799999984322 222110 1467889999999999999998765 678888888863 33333
Q ss_pred EcC-CCCCCcceEEEEec--CeEEEEeCCCCeEEEEeccC-CcceEEEecccCCCceec-cCCcccCCCCCCCCCCcccc
Q psy14257 532 LSN-HDSLTHPFAIALFE--NHVYWTDWRTNSVIRANKWN-GSDVTLIQRTLTQPFIYV-NGVVKKSPCEMNNGNCSHLC 606 (841)
Q Consensus 532 ~~~-~~~l~~P~gla~~~--~~lY~td~~~~~i~~~~~~~-g~~~~~i~~~~~~p~~~h-~qp~~~n~C~~~ng~Cs~lC 606 (841)
+.. ......|.-|++.+ .+||.+....+.|....... |.-..++........+.| +|-.. -.|.=
T Consensus 81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~----------h~H~a 150 (346)
T COG2706 81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESP----------HVHSA 150 (346)
T ss_pred eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCC----------cccee
Confidence 332 22234568899965 48999999888876554322 433222221111111122 22211 11222
Q ss_pred ccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEE
Q psy14257 607 LIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWT 686 (841)
Q Consensus 607 ~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~ 686 (841)
..+|.+.+.|.|.-| . ++|..+.++...........+..-.-|..|+|.|..+..|.+
T Consensus 151 ~~tP~~~~l~v~DLG----~------------------Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v 208 (346)
T COG2706 151 NFTPDGRYLVVPDLG----T------------------DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV 208 (346)
T ss_pred eeCCCCCEEEEeecC----C------------------ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE
Confidence 234555555555333 2 234444443221111111112333568899999999999999
Q ss_pred ECCCCeEEEEEcccCc--eeeeeeeeeeeecccccccccccCceEEEEe--e---CCCCCcceeEEeecCCcEEEEecCC
Q psy14257 687 DQEYNEVKRSSIVGGQ--IQLVVDAVFEFYLTPLSKRSSIVGGQIQLVV--D---AGISHPSGLAIDWIAQNMFIAVSSP 759 (841)
Q Consensus 687 d~~~~~I~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~---~~~~~p~glAvD~~~~~LYw~~~~~ 759 (841)
..-+++|.....++.. .+. .+++. . .+......|.|...+|.||.+ ++
T Consensus 209 ~EL~stV~v~~y~~~~g~~~~-----------------------lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas--NR 263 (346)
T COG2706 209 NELNSTVDVLEYNPAVGKFEE-----------------------LQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS--NR 263 (346)
T ss_pred eccCCEEEEEEEcCCCceEEE-----------------------eeeeccCccccCCCCceeEEEECCCCCEEEEe--cC
Confidence 9889999999888743 111 11211 1 234456679999999999999 68
Q ss_pred CCCeEEEEecCCcc-eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCC
Q psy14257 760 TQSKIVVCNLEGEY-QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 760 ~~~~I~v~~l~g~~-~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~ 823 (841)
..+.|.+++++-.. +-.++...+.. ..-||+..++|...+|+.+....+ .|.....|..
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~~~~te---g~~PR~F~i~~~g~~Liaa~q~sd--~i~vf~~d~~ 323 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVGITPTE---GQFPRDFNINPSGRFLIAANQKSD--NITVFERDKE 323 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEEEeccC---CcCCccceeCCCCCEEEEEccCCC--cEEEEEEcCC
Confidence 88899999886542 22333210000 345999999999999999998775 4666665554
No 25
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.06 E-value=3.7e-07 Score=97.98 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=167.7
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeec
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIG 308 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~ 308 (841)
..|+..++.+............+.++.|....+. +|.+....+.|...++.++. ... .+.. ...|..+++++.+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~--l~~~~~~~~~v~~~d~~~~~--~~~-~~~~-~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKL--LYVCASDSDTIQVIDLATGE--VIG-TLPS-GPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCCceEECCCCCE--EEEEECCCCeEEEEECCCCc--EEE-eccC-CCCccEEEECCCC
Confidence 4455555554443333333333556777665444 88888778889888876553 111 1222 2356778888766
Q ss_pred CceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEe
Q psy14257 309 KNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFN 388 (841)
Q Consensus 309 ~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~ 388 (841)
+.+|+ + ...++.|..+++......... ..-..|.++++++++..++.+......+..+++..........
T Consensus 85 ~~l~~--~-------~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 85 KILYI--A-------NEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred CEEEE--E-------cCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 55544 2 123457888888653221111 1123589999999888888877655556666665433221111
Q ss_pred eeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceE-EEEec------CCCCCceeEEEcCCCCeEEEE
Q psy14257 389 LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR-RTLIA------GDMESPRAIALDPRFGLLFWT 461 (841)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~-~~l~~------~~l~~P~giavd~~~g~Ly~t 461 (841)
.. ..+. ..+++..+..||++....+.|.+.++..... +.+-. .....|.+++++|...++|++
T Consensus 155 ~~--~~~~--------~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 155 VD--QRPR--------FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred cC--CCcc--------EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 00 0000 1123334466777765567898888865432 22211 112357899999998889988
Q ss_pred ecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcc
Q psy14257 462 DWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHP 541 (841)
Q Consensus 462 d~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P 541 (841)
... ..+|...+++......... .-..|.++++.+.+.+||.+....+.|..+++++.....-+.. -..|
T Consensus 225 ~~~--~~~i~v~d~~~~~~~~~~~------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~ 293 (300)
T TIGR03866 225 LGP--ANRVAVVDAKTYEVLDYLL------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLP 293 (300)
T ss_pred cCC--CCeEEEEECCCCcEEEEEE------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---cccc
Confidence 765 4678888875433222222 1236889999998899998877778999999988664333332 2678
Q ss_pred eEEEE
Q psy14257 542 FAIAL 546 (841)
Q Consensus 542 ~gla~ 546 (841)
++|++
T Consensus 294 ~~~~~ 298 (300)
T TIGR03866 294 WGVVV 298 (300)
T ss_pred ceeEe
Confidence 99886
No 26
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.04 E-value=1.7e-06 Score=93.68 Aligned_cols=287 Identities=10% Similarity=0.104 Sum_probs=170.2
Q ss_pred CeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC---------CCCeEEEEEcC
Q psy14257 456 GLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA---------KSDSIHTVTYD 524 (841)
Q Consensus 456 g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~---------~~~~I~~~~~d 524 (841)
.++|++|... ..++|..++.+.....-.+. ....|.++ +.++++.||++.. ..+.|..+|..
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~------~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTD------GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEE------ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 5789988651 12678888776533333333 44689997 9999999999999 88999999987
Q ss_pred CC-eeEEEEcCCC----CCCcceEEEE--ecCeEEEEeCC-CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCC
Q psy14257 525 GK-DHHVVLSNHD----SLTHPFAIAL--FENHVYWTDWR-TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCE 596 (841)
Q Consensus 525 G~-~~~~i~~~~~----~l~~P~gla~--~~~~lY~td~~-~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~ 596 (841)
.. ....+..... ....|..+++ .+.+||++++. .++|..++..+++.+..|.-
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v------------------- 146 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV------------------- 146 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------------------
Confidence 54 3333332211 1344556666 45689999987 88999999877776554431
Q ss_pred CCCCCCccccccCCCCceeeeCCCCceee----cCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCce
Q psy14257 597 MNNGNCSHLCLIGMNGTYKCQCPHVMKLM----SDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPN 672 (841)
Q Consensus 597 ~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~----~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (841)
++|.++-.... ..+.-.|++|-.+. .+++ .. .....++ +.. ..+ -+.+|
T Consensus 147 ---p~~~~vy~t~e-~~~~~~~~Dg~~~~v~~d~~g~---------~~-~~~~~vf----~~~---~~~-----v~~rP- 199 (352)
T TIGR02658 147 ---PDCYHIFPTAN-DTFFMHCRDGSLAKVGYGTKGN---------PK-IKPTEVF----HPE---DEY-----LINHP- 199 (352)
T ss_pred ---CCCcEEEEecC-CccEEEeecCceEEEEecCCCc---------eE-Eeeeeee----cCC---ccc-----cccCC-
Confidence 45766655333 33556677764443 1111 00 0000000 000 011 11334
Q ss_pred EEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee------CCCCCcceeEEe
Q psy14257 673 NLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD------AGISHPSGLAID 746 (841)
Q Consensus 673 ~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~p~glAvD 746 (841)
.|.+..++.+|+..+ ++|+.+++.+.....+. ..+++.. ..-..++.+|++
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------------------~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------------------AIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------------------eeeeccccccccccCCCcceeEEEc
Confidence 456656777777766 99999998775511110 0011110 011223339999
Q ss_pred ecCCcEEEEecCCCC--------CeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCC-eEEEEecCCCcceEEE
Q psy14257 747 WIAQNMFIAVSSPTQ--------SKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKG-KMFWSNVTKQVVTIEM 817 (841)
Q Consensus 747 ~~~~~LYw~~~~~~~--------~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g-~lyw~d~~~~~~~I~~ 817 (841)
..+++||++. .... ++|.++++....+..-+.- -..|.+|++.|... +||.+....+ .|..
T Consensus 257 ~dg~~lyV~~-~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-------G~~~~~iavS~Dgkp~lyvtn~~s~--~VsV 326 (352)
T TIGR02658 257 RARDRIYLLA-DQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-------GHEIDSINVSQDAKPLLYALSTGDK--TLYI 326 (352)
T ss_pred CCCCEEEEEe-cCCccccccCCCCEEEEEECCCCeEEEEEeC-------CCceeeEEECCCCCeEEEEeCCCCC--cEEE
Confidence 9999999963 2222 5677877755544333332 26899999999999 9999998764 4554
Q ss_pred EecCCCceEEEec
Q psy14257 818 AFMDGTKRETVVS 830 (841)
Q Consensus 818 ~~~dG~~~~~l~~ 830 (841)
++ ...++++.+
T Consensus 327 iD--~~t~k~i~~ 337 (352)
T TIGR02658 327 FD--AETGKELSS 337 (352)
T ss_pred EE--CcCCeEEee
Confidence 44 444444444
No 27
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.92 E-value=3.7e-08 Score=107.53 Aligned_cols=262 Identities=18% Similarity=0.198 Sum_probs=148.7
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEE-----EEeCCCCCccceEEeee---cCceeEEEeeec
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDV-----VVQTGLSTAEGLAVDWI---GKNLYMFWAFWS 319 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~-----~~~~~l~~p~giavD~~---~~~~y~~~td~~ 319 (841)
|+++.+|.|... ++ ||+++. .|+|++...+ +.. ...+ +...+...+.|||+++. .+.+|++.+...
T Consensus 1 L~~P~~~a~~pd-G~--l~v~e~-~G~i~~~~~~-g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GR--LLVAER-SGRIWVVDKD-GSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp ESSEEEEEEETT-SC--EEEEET-TTEEEEEETT-TEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CCCceEEEEeCC-Cc--EEEEeC-CceEEEEeCC-CcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 356888888876 56 999987 8999999744 332 1111 12344567889999983 356788877541
Q ss_pred CCCCCCCCCCEEEEccCCC-----ccccccc------cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEe
Q psy14257 320 LSPSNSSDGGIEKAGMHGE-----NRSPLVT------KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFN 388 (841)
Q Consensus 320 ~~~~~~~~~~I~~~~~dG~-----~~~~l~~------~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~ 388 (841)
... .....+|.|+..+.. ..++++. ...+...+|++++++ +|||+-..... .+
T Consensus 75 ~~~-~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~-----~~--------- 138 (331)
T PF07995_consen 75 EDG-GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGN-----DD--------- 138 (331)
T ss_dssp TSS-SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTT-----GG---------
T ss_pred CCC-CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCC-----cc---------
Confidence 111 122347888887644 2222321 134566779999865 88887432211 00
Q ss_pred eeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce------------EEEEecCCCCCceeEEEcCCCC
Q psy14257 389 LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF------------RRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 389 ~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~------------~~~l~~~~l~~P~giavd~~~g 456 (841)
. + ..+ ....++|.+++.+|+. ...+...++.+|.++++||..|
T Consensus 139 ---------~--------~-----~~~---~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg 193 (331)
T PF07995_consen 139 ---------N--------A-----QDP---NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG 193 (331)
T ss_dssp ---------G--------G-----CST---TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred ---------c--------c-----ccc---ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence 0 0 000 1123456666666541 1133456889999999999999
Q ss_pred eEEEEecCCCC-CeEEEecCCCCC--------------c------------EEEEEecccCCCCCCceeEEEec------
Q psy14257 457 LLFWTDWDSKA-PRIERCSMSGEH--------------R------------SVIVRVDLLTSRGAWPNGLTLDY------ 503 (841)
Q Consensus 457 ~Ly~td~~~~~-~~I~r~~ldG~~--------------~------------~~i~~~~~~~~~~~~P~glalD~------ 503 (841)
.||.+|.+... -.|.++.- |.+ . .-+... ..-..|.|+++=.
T Consensus 194 ~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~----~~~~ap~G~~~y~g~~fp~ 268 (331)
T PF07995_consen 194 RLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAY----PPHSAPTGIIFYRGSAFPE 268 (331)
T ss_dssp EEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEE----TTT--EEEEEEE-SSSSGG
T ss_pred cEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCccceee----cCccccCceEEECCccCcc
Confidence 99999976321 23333331 111 0 000110 1235688988752
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCe----eEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEE
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDGKD----HHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG~~----~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~ 563 (841)
..+.+++++...++|.++.++... .+.++. ..-..|.+|++ .+|.||+++..+++|+|
T Consensus 269 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 269 YRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG--GFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp GTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT--TSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred ccCcEEEecCCCCEEEEEeeecCCCccceEEccc--cCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 257899999999999999997432 222221 11237889999 46899999999999986
No 28
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.86 E-value=9.3e-07 Score=96.52 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=148.4
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe-cccCCCCCCceeEEEec---cCCEEEEEeCCC---
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV-DLLTSRGAWPNGLTLDY---QLTRIYWIDAKS--- 515 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~-~~~~~~~~~P~glalD~---~~~~LYw~d~~~--- 515 (841)
|++|++||+.|+ |.||+++. .++|+++..+|.....+... .........+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~---~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER---SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET---TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCCceEEEEeCC-CcEEEEeC---CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 468999999997 89999995 48999999888774444442 22223456678999997 368999877632
Q ss_pred -----CeEEEEEcCCC-----eeEEEEcC-C---CCCCcceEEEEe-cCeEEEEeCCCCeEEEEeccCCcceEEEecccC
Q psy14257 516 -----DSIHTVTYDGK-----DHHVVLSN-H---DSLTHPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLT 580 (841)
Q Consensus 516 -----~~I~~~~~dG~-----~~~~i~~~-~---~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~ 580 (841)
.+|.++.++.. ..++++.. . .......+|++. +++|||+-..... .....
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~---------------~~~~~ 141 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN---------------DDNAQ 141 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT---------------GGGGC
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC---------------ccccc
Confidence 47888877654 23333322 1 112333556663 5789988543321 00000
Q ss_pred CCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcccc
Q psy14257 581 QPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTI 660 (841)
Q Consensus 581 ~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~ 660 (841)
.+ + ...+.- +.+.+|+. .- ...||+ . ... ..
T Consensus 142 ~~----------------~---------~~~G~i-------lri~~dG~-~p-~dnP~~---~----------~~~--~~ 172 (331)
T PF07995_consen 142 DP----------------N---------SLRGKI-------LRIDPDGS-IP-ADNPFV---G----------DDG--AD 172 (331)
T ss_dssp ST----------------T---------SSTTEE-------EEEETTSS-B--TTSTTT---T----------STT--ST
T ss_pred cc----------------c---------cccceE-------EEecccCc-CC-CCCccc---c----------CCC--ce
Confidence 00 0 000000 00111111 00 001111 0 000 00
Q ss_pred ceeecCCCCCceEEEEecCCCEEEEEECCCC---eEEEEEcccCceeeeeeeeeeeeccccccc-----------cccc-
Q psy14257 661 PTISIPQVFSPNNLNFDAANKKIYWTDQEYN---EVKRSSIVGGQIQLVVDAVFEFYLTPLSKR-----------SSIV- 725 (841)
Q Consensus 661 ~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~---~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~- 725 (841)
..+-...+.|+.+++||+.++.||.+|.... .|.++. .|.+ |-=|..+. ....
T Consensus 173 ~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~n-----------YGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 173 SEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGN-----------YGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B-------------TTTBSSSCSTTSS-ECTGSS-T
T ss_pred EEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCc-----------CCCCCCcCCCCCCCCccccccCCC
Confidence 1111236789999999999999999996543 455543 2322 31111110 0000
Q ss_pred CceEEEEeeCCCCCcceeEEee------cCCcEEEEecCCCCCeEEEEecCCcc----eEEEEcCCCCCCCcCC-CceEE
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDW------IAQNMFIAVSSPTQSKIVVCNLEGEY----QTTILSNESNDTSTLS-KISSI 794 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~------~~~~LYw~~~~~~~~~I~v~~l~g~~----~~~~~~~~~~~~~~l~-~p~~i 794 (841)
......+.-..-..|.||++-. ..+.+|++ +....+|.++.++... ...++.. .. +|++|
T Consensus 241 ~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~r~~~v 311 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGG-------FGGRPRDV 311 (331)
T ss_dssp TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTT-------SSS-EEEE
T ss_pred CcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEcccc-------CCCCceEE
Confidence 1101111112235788888872 24468999 4578899999997332 3334433 44 89999
Q ss_pred EEeCCCCeEEEEecCCCcceEEE
Q psy14257 795 AVWPVKGKMFWSNVTKQVVTIEM 817 (841)
Q Consensus 795 avd~~~g~lyw~d~~~~~~~I~~ 817 (841)
+++|. |.||.++... ++|.|
T Consensus 312 ~~~pD-G~Lyv~~d~~--G~iyR 331 (331)
T PF07995_consen 312 AQGPD-GALYVSDDSD--GKIYR 331 (331)
T ss_dssp EEETT-SEEEEEE-TT--TTEEE
T ss_pred EEcCC-CeEEEEECCC--CeEeC
Confidence 99996 9999999854 47876
No 29
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=5.2e-07 Score=93.02 Aligned_cols=211 Identities=16% Similarity=0.155 Sum_probs=114.6
Q ss_pred ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 248 LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 248 ~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
..++.|+.|+...+. ||-+.-..+.|+..+++|. -.+.+--.+..-++||++ .+++.|+.-.+ ..
T Consensus 21 ~~e~SGLTy~pd~~t--LfaV~d~~~~i~els~~G~---vlr~i~l~g~~D~EgI~y--~g~~~~vl~~E--------r~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGT--LFAVQDEPGEIYELSLDGK---VLRRIPLDGFGDYEGITY--LGNGRYVLSEE--------RD 85 (248)
T ss_dssp -S-EEEEEEETTTTE--EEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE---STTEEEEEET--------TT
T ss_pred cCCccccEEcCCCCe--EEEEECCCCEEEEEcCCCC---EEEEEeCCCCCCceeEEE--ECCCEEEEEEc--------CC
Confidence 346899999987766 9988778899999988753 334455567889999998 45566665332 23
Q ss_pred CCEEEEccC--CCccccc--cccCcC-------CCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCC
Q psy14257 328 GGIEKAGMH--GENRSPL--VTKNIQ-------WPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDS 396 (841)
Q Consensus 328 ~~I~~~~~d--G~~~~~l--~~~~~~-------~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~ 396 (841)
++|.++..+ ++....- ..-.+. .-.||++|+.+++||++-....
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P------------------------- 140 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP------------------------- 140 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------------------------
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------------------------
Confidence 466666652 3221111 001222 2479999999999998853221
Q ss_pred ccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
..||=.+. ....+.+.....-.. ....+..|.+|++||..|+||+.... +..|...+
T Consensus 141 ----------------~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~S~l~~~p~t~~lliLS~e--s~~l~~~d 199 (248)
T PF06977_consen 141 ----------------KRLYEVNGFPGGFDLFVSDDQDLDD---DKLFVRDLSGLSYDPRTGHLLILSDE--SRLLLELD 199 (248)
T ss_dssp ----------------EEEEEEESTT-SS--EEEE-HHHH----HT--SS---EEEEETTTTEEEEEETT--TTEEEEE-
T ss_pred ----------------hhhEEEccccCccceeecccccccc---ccceeccccceEEcCCCCeEEEEECC--CCeEEEEC
Confidence 12222221 111111111111000 11235679999999999999999865 78999999
Q ss_pred CCCCCcEEEEEec-c--cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 475 MSGEHRSVIVRVD-L--LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 475 ldG~~~~~i~~~~-~--~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
.+|.....+.-.. . ....+.+|.|||+|. +|+||++.. -+..+++
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEe
Confidence 9998655443210 0 013567899999995 789999886 4566655
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.77 E-value=9.8e-07 Score=90.99 Aligned_cols=201 Identities=16% Similarity=0.151 Sum_probs=120.8
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEE-EecCCCcEEE
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VESNLDQIEV 427 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~~~~~I~v 427 (841)
..++||++++++++||.+.-+...|..++++|.-.+.+. ...+ ..+++|.++++..|+ ++...+++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l~g~----------~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-LDGF----------GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--SS-----------SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-CCCC----------CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 348999999999999999999999999999987655432 1111 123456666666665 5666788888
Q ss_pred EccC--Cce--EE---EE--ecC--CCCCceeEEEcCCCCeEEEEecCCCCC-eEEEecC--CCCCcEEEEEecc--cCC
Q psy14257 428 AKLS--GQF--RR---TL--IAG--DMESPRAIALDPRFGLLFWTDWDSKAP-RIERCSM--SGEHRSVIVRVDL--LTS 491 (841)
Q Consensus 428 ~~~~--G~~--~~---~l--~~~--~l~~P~giavd~~~g~Ly~td~~~~~~-~I~r~~l--dG~~~~~i~~~~~--~~~ 491 (841)
+.++ ++. .. .+ ... +-..-.|||.|+.++.||++.-. .+ .|+.++. .+....+...... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccccccccc
Confidence 7773 221 11 11 111 12335899999999999998654 34 6788876 3333333322111 123
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCC------CCCCcceEEEEe-cCeEEEEeCCCCeEEE
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNH------DSLTHPFAIALF-ENHVYWTDWRTNSVIR 563 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~------~~l~~P~gla~~-~~~lY~td~~~~~i~~ 563 (841)
.+..|.+|++|+.+++||+......+|..++.+|..+..+.-.. ..+++|-|||+. +|.||++.-. +..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence 56679999999999999999999999999999998766543332 346789999995 5899999853 34443
No 31
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.75 E-value=4.1e-09 Score=72.83 Aligned_cols=36 Identities=47% Similarity=1.151 Sum_probs=30.9
Q ss_pred CCCCCCCCccccccCCCCceeeeCCCCceeecCCCcc
Q psy14257 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631 (841)
Q Consensus 595 C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC 631 (841)
|..+||+|+|+|+..+. +|+|.||.||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g-~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPG-SYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETT-SEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCC-ceEeECCCCCEECcCCCCC
Confidence 67789999999999964 5999999999999999987
No 32
>KOG1520|consensus
Probab=98.74 E-value=1.4e-06 Score=92.35 Aligned_cols=191 Identities=18% Similarity=0.240 Sum_probs=130.9
Q ss_pred eEEEecCCCeEEEEEec--CC--cccce-EEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCc
Q psy14257 265 VFWTDVIDDKIYNATLI--GN--SLSNI-DVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGEN 339 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~--~~--~~~~~-~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~ 339 (841)
|+|+-...+.|-++... .. ..... ..-...--..|-|||++..++++|+.++.. .+++++..|..
T Consensus 78 l~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl----------GL~~V~p~g~~ 147 (376)
T KOG1520|consen 78 LKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL----------GLLKVGPEGGL 147 (376)
T ss_pred EEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce----------eeEEECCCCCc
Confidence 67776666666655431 00 00000 111122236899999999998999876554 57888888887
Q ss_pred ccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceE
Q psy14257 340 RSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNL 415 (841)
Q Consensus 340 ~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~L 415 (841)
...+... ++...++++||. ++.|||+|+....= ++ +.+
T Consensus 148 a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~---------~r----------------------------d~~ 189 (376)
T KOG1520|consen 148 AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYD---------RR----------------------------DFV 189 (376)
T ss_pred ceeccccccCeeeeecCceeEcC-CCeEEEeccccccc---------hh----------------------------heE
Confidence 5555443 677889999998 99999999743100 00 112
Q ss_pred EEE--ecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc---EEEEEecccC
Q psy14257 416 YWV--ESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR---SVIVRVDLLT 490 (841)
Q Consensus 416 Y~t--D~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~---~~i~~~~~~~ 490 (841)
+.. ...++|+.++|...+..++++ ++|.-|+|||+.+++.++-+++.. ..+|.|..+.|... ++++.
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~--~~ri~rywi~g~k~gt~EvFa~----- 261 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT--TARIKRYWIKGPKAGTSEVFAE----- 261 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec--cceeeeeEecCCccCchhhHhh-----
Confidence 211 124678888888877776665 579999999999999999999987 78999999998766 66655
Q ss_pred CCCCCceeEEEeccCCEEEEEe
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d 512 (841)
.--..|.-|..+ .+|..+++-
T Consensus 262 ~LPG~PDNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 262 GLPGYPDNIRRD-STGHFWVAL 282 (376)
T ss_pred cCCCCCcceeEC-CCCCEEEEE
Confidence 234579999998 456555543
No 33
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.72 E-value=4.8e-09 Score=73.44 Aligned_cols=36 Identities=50% Similarity=1.246 Sum_probs=33.2
Q ss_pred CCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 31 KCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 31 ~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
.|...+|+|. ++.||+..|+|||..||. |||||.+|
T Consensus 2 ~C~~~~f~C~-~~~CI~~~~~CDg~~DC~--dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCG-NGQCIPKSWVCDGIPDCP--DGSDEQNC 37 (37)
T ss_dssp SSSTTEEEET-TSSEEEGGGTTSSSCSSS--SSTTTSSH
T ss_pred cCcCCeeEcC-CCCEEChHHcCCCCCCCC--CCcccccC
Confidence 6889999998 777999999999999999 99999876
No 34
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.67 E-value=9.5e-09 Score=71.24 Aligned_cols=35 Identities=54% Similarity=1.359 Sum_probs=32.1
Q ss_pred CCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 32 C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|.+++|+|. +++|||..|+|||..||. |+|||..|
T Consensus 1 C~~~~f~C~-~~~Ci~~~~~CDg~~DC~--dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCG--DGSDEENC 35 (35)
T ss_pred CCCCeEEcC-CCCeeCHHHcCCCccCCC--CCcccccC
Confidence 677899998 699999999999999999 99999765
No 35
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.63 E-value=6.9e-08 Score=70.19 Aligned_cols=41 Identities=41% Similarity=0.727 Sum_probs=39.1
Q ss_pred ceEEEEecCCC-cEEEEccCCceEEEEecCCCCCceeEEEcC
Q psy14257 413 KNLYWVESNLD-QIEVAKLSGQFRRTLIAGDMESPRAIALDP 453 (841)
Q Consensus 413 ~~LY~tD~~~~-~I~v~~~~G~~~~~l~~~~l~~P~giavd~ 453 (841)
++|||||...+ .|.+++++|+.+++++..++.+|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 57999999999 999999999999999999999999999986
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.63 E-value=3.5e-06 Score=84.47 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=150.0
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
.|..+|.++.+ -|.+++. ..+.|-+.+.......++....-..|.||.++++ +..+++|... .|.|++
T Consensus 63 ap~dvapapdG---~VWft~q-------g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~d 130 (353)
T COG4257 63 APFDVAPAPDG---AVWFTAQ-------GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPD-GSAWITDTGL-AIGRLD 130 (353)
T ss_pred CccccccCCCC---ceEEecC-------ccccceecCCCCCceEEEecCCCCCCceEEECCC-CCeeEecCcc-eeEEec
Confidence 67778877543 3333432 2345666665544444444445568999999976 6678888877 888887
Q ss_pred ecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCe
Q psy14257 378 VDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457 (841)
Q Consensus 378 ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~ 457 (841)
....+.+.+--...... ..+ ..++---.|+|+||.. .+.--+.+..-..+++.-...-..|.||++.|+ |.
T Consensus 131 pkt~evt~f~lp~~~a~-~nl------et~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpd-Gs 201 (353)
T COG4257 131 PKTLEVTRFPLPLEHAD-ANL------ETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATPD-GS 201 (353)
T ss_pred CcccceEEeecccccCC-Ccc------cceeeCCCccEEEeec-cccceecCcccCceeeeccCCCCCCcceEECCC-Cc
Confidence 75554444311110000 000 0011112278888865 233334444444445544433467999999986 89
Q ss_pred EEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC-CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCC
Q psy14257 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR-GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536 (841)
Q Consensus 458 Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~-~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~ 536 (841)
+|++... .+.|-|++.-....+++..- .. -..-..+-.|+ .++++.++..++.++++++.-..-....- .+
T Consensus 202 vwyasla--gnaiaridp~~~~aev~p~P----~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypL-Pg 273 (353)
T COG4257 202 VWYASLA--GNAIARIDPFAGHAEVVPQP----NALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPL-PG 273 (353)
T ss_pred EEEEecc--ccceEEcccccCCcceecCC----CcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeC-CC
Confidence 9999866 57888888643344444331 11 11223455664 58999999999999999987654333221 22
Q ss_pred CCCcceEEEEec-CeEEEEeCCCCeEEEEeccCC
Q psy14257 537 SLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 537 ~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g 569 (841)
...+|+.+-++. |+++.+|+..+.|.|.+..+-
T Consensus 274 s~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 274 SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred CCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 356899999965 889999999999999998643
No 37
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.62 E-value=9.9e-08 Score=69.36 Aligned_cols=41 Identities=37% Similarity=0.872 Sum_probs=38.6
Q ss_pred CEEEEEECCCC-eEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEee
Q psy14257 681 KKIYWTDQEYN-EVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDW 747 (841)
Q Consensus 681 ~~iyw~d~~~~-~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~ 747 (841)
++|||+|...+ .|.+++++|++ +++++..++..|+||||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~--------------------------~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSN--------------------------RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTS--------------------------EEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCC--------------------------eEEEEECCCCCcCEEEECC
Confidence 58999999999 99999999998 8888999999999999997
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.59 E-value=9.9e-06 Score=81.30 Aligned_cols=257 Identities=14% Similarity=0.089 Sum_probs=155.5
Q ss_pred ccccccccccccEEEEe-ccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeee
Q psy14257 229 HELRGVDLRTFNVIALI-SSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWI 307 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~-~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~ 307 (841)
..|-+++..+++++.+. ..-..+.+|-.... +. .+++|... .|.|.+.+...+....+.....-...+-..+|+.
T Consensus 83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpd-g~--~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~ 158 (353)
T COG4257 83 GAIGHLDPATGEVETYPLGSGASPHGIVVGPD-GS--AWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW 158 (353)
T ss_pred ccceecCCCCCceEEEecCCCCCCceEEECCC-CC--eeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCC
Confidence 55778888887776653 23345666665554 45 89999887 8999876544332233333333334555678865
Q ss_pred cCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEE
Q psy14257 308 GKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSF 387 (841)
Q Consensus 308 ~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~ 387 (841)
+ ++++ |.. .|---|.+..-...+++....-.-|.||.+.++
T Consensus 159 G-~lWF--t~q--------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpd---------------------------- 199 (353)
T COG4257 159 G-NLWF--TGQ--------IGAYGRLDPARNVISVFPAPQGGGPYGICATPD---------------------------- 199 (353)
T ss_pred c-cEEE--eec--------cccceecCcccCceeeeccCCCCCCcceEECCC----------------------------
Confidence 4 4433 321 111113333333333333344456888888754
Q ss_pred eeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEE-ecCC-CCCceeEEEcCCCCeEEEEecCC
Q psy14257 388 NLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL-IAGD-MESPRAIALDPRFGLLFWTDWDS 465 (841)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l-~~~~-l~~P~giavd~~~g~Ly~td~~~ 465 (841)
|.||++....+.|.+++.-....+++ ..+. ...-+.|-.||. |.++.|+|+
T Consensus 200 -------------------------Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi-g~~wittwg- 252 (353)
T COG4257 200 -------------------------GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI-GRAWITTWG- 252 (353)
T ss_pred -------------------------CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCcc-CcEEEeccC-
Confidence 55566555555666555432222222 2222 234567888886 899999999
Q ss_pred CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEE
Q psy14257 466 KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIA 545 (841)
Q Consensus 466 ~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla 545 (841)
+++++|++..-+.-...-- +..-..|..|-+| ..+|++.+|...+.|.++|+.....+++... -.++--+.
T Consensus 253 -~g~l~rfdPs~~sW~eypL----Pgs~arpys~rVD-~~grVW~sea~agai~rfdpeta~ftv~p~p---r~n~gn~q 323 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPL----PGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPETARFTVLPIP---RPNSGNIQ 323 (353)
T ss_pred -CceeeEeCcccccceeeeC----CCCCCCcceeeec-cCCcEEeeccccCceeecCcccceEEEecCC---CCCCCcee
Confidence 8999999986554322211 1344678999999 5789999999999999999876555544332 23344455
Q ss_pred Ee--cCeEEEEeCCCCeEEEE
Q psy14257 546 LF--ENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 546 ~~--~~~lY~td~~~~~i~~~ 564 (841)
+. .|.++.++.....+.+.
T Consensus 324 l~gr~ge~W~~e~gvd~lv~~ 344 (353)
T COG4257 324 LDGRPGELWFTEAGVDALVTT 344 (353)
T ss_pred ccCCCCceeecccCcceeEEE
Confidence 54 47888888777666544
No 39
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.53 E-value=3.9e-08 Score=67.99 Aligned_cols=36 Identities=36% Similarity=0.720 Sum_probs=31.2
Q ss_pred ccccCCCCCCCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 134 KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 134 C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|...++.|+|.|.+++++|+|+|++||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 455688999999999999999999999999999987
No 40
>KOG4499|consensus
Probab=98.52 E-value=5e-06 Score=81.43 Aligned_cols=207 Identities=15% Similarity=0.207 Sum_probs=122.6
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCC-ccccCCCCCCccccccceEEEEecCCCcEEEEcc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDS-RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~-~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
.|+.+|.+++.|||+|...+.|.|.+..-...... ..-+.+. ...+|.-. +-..|.+--+ .+....+.
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra---~ie~p~~ag~ilpv~~-------~~q~~~v~~G-~kf~i~nw 86 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRA---KIEGPPSAGFILPVEG-------GPQEFAVGCG-SKFVIVNW 86 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEE---EEecCcceeEEEEecC-------CCceEEEeec-ceEEEEEc
Confidence 78999999999999999888887765543222111 0000000 00000000 0123333222 24445566
Q ss_pred CCceEEE-EecC------C--CCCceeEEEcCCCCeEEEEe---cCC---CCCeEEEecCCCCCcEEEEEecccCCCCCC
Q psy14257 431 SGQFRRT-LIAG------D--MESPRAIALDPRFGLLFWTD---WDS---KAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495 (841)
Q Consensus 431 ~G~~~~~-l~~~------~--l~~P~giavd~~~g~Ly~td---~~~---~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~ 495 (841)
+|..... +..+ . -.+-+.--+||..++ |.-- .+. .-+...+..+-|.....+. ..+..
T Consensus 87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~------~~v~I 159 (310)
T KOG4499|consen 87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIW------NCVGI 159 (310)
T ss_pred ccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeee------hhccC
Confidence 7643222 2211 1 124456678887554 5432 110 1122333334444444444 36778
Q ss_pred ceeEEEeccCCEEEEEeCCCCeEEEEEcCC-----CeeEEEEcCC----CCCCcceEEEEe-cCeEEEEeCCCCeEEEEe
Q psy14257 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDG-----KDHHVVLSNH----DSLTHPFAIALF-ENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~~~~~I~~~~~dG-----~~~~~i~~~~----~~l~~P~gla~~-~~~lY~td~~~~~i~~~~ 565 (841)
||||+.|.+.+..|++|+.+-.|-.+++|- ++++.++.-. ..-..|.|++++ +|+||++-|..++|++++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 999999999999999999999998887652 4555554321 122468999994 699999999999999999
Q ss_pred ccCCcceEEEe
Q psy14257 566 KWNGSDVTLIQ 576 (841)
Q Consensus 566 ~~~g~~~~~i~ 576 (841)
+.+|+-...+.
T Consensus 240 p~tGK~L~eik 250 (310)
T KOG4499|consen 240 PTTGKILLEIK 250 (310)
T ss_pred CCCCcEEEEEE
Confidence 99998765443
No 41
>KOG1520|consensus
Probab=98.50 E-value=2.1e-06 Score=91.02 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=103.0
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEE
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~ 426 (841)
..++|-||+++..++.||+||...+ |+.+++.|+..+.+.
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~--------------------------------------- 152 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLA--------------------------------------- 152 (376)
T ss_pred ccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecc---------------------------------------
Confidence 5689999999999889999987544 333333333211110
Q ss_pred EEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC---------------CCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS---------------KAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 427 v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~---------------~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
-..+|. .+...+++.|++ +|.+||||... ..+++.|.+..-+..+++. .
T Consensus 153 -~~~~G~--------~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl------d 216 (376)
T KOG1520|consen 153 -DEAEGK--------PFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL------D 216 (376)
T ss_pred -ccccCe--------eeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh------h
Confidence 001111 123456889998 79999999653 2455666665555555555 4
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee---EEEEcCCCCCCcceEEEEec-CeEEEEe
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH---HVVLSNHDSLTHPFAIALFE-NHVYWTD 555 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~---~~i~~~~~~l~~P~gla~~~-~~lY~td 555 (841)
++..|||+++.+++..+.+++....+|.++-+.|... .+++++- -..|.-|...+ |.+|++-
T Consensus 217 ~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L--PG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 217 GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL--PGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcC--CCCCcceeECCCCCEEEEE
Confidence 8999999999999999999999999999999998766 5555532 34688888755 6666654
No 42
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.45 E-value=2.6e-05 Score=83.09 Aligned_cols=190 Identities=16% Similarity=0.193 Sum_probs=118.2
Q ss_pred ceEEEEccCCEEEEEeCCC------------CeEEEEEecCCccEEEEee--eeecCCCccccCCCCCCccccc-----c
Q psy14257 352 SSLVIDYNQDILYWCDSHL------------NTVESVRVDGSERTVSFNL--EVLGSDSRVGIPNCRPEDNLWI-----G 412 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~------------~~I~~~~ldG~~~~~~~~~--~~~~~~~~~~i~~~~~~avdw~-----~ 412 (841)
.++.+| ..++|++.|... .+|..+++........+.. ........+. -++||-. .
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-----dl~VD~~~~~~~~ 77 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-----DLVVDVRDGNCDD 77 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-----EEEEECTTTTS-S
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-----eEEEEccCCCCcc
Confidence 466777 468888888642 3777777765543322221 1111111100 0123332 2
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCC------------------CCceeEEEcC---CCCeEEEEecCCCCCeE
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDM------------------ESPRAIALDP---RFGLLFWTDWDSKAPRI 470 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l------------------~~P~giavd~---~~g~Ly~td~~~~~~~I 470 (841)
+.+|+||.....|.|+++. |+..+++...-. ....|||+.| .++.|||.--. ..++
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls--s~~l 155 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS--SRKL 155 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEE
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC--CCcE
Confidence 6899999999999999986 455555433111 2246788876 45689999866 5788
Q ss_pred EEecC----CCC---------CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC----CeeEEEEc
Q psy14257 471 ERCSM----SGE---------HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG----KDHHVVLS 533 (841)
Q Consensus 471 ~r~~l----dG~---------~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG----~~~~~i~~ 533 (841)
+++.. +.+ ..+.+.. ......|+++|. ++.||+++...+.|.+.+.++ .+.+++++
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~------k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDLGD------KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEEEE---------SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred EEEEHHHhhCccccccccccccceeccc------cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 88885 221 1123332 224568999995 899999999999999999998 56777887
Q ss_pred CCCCCCcceEEEEec---CeEEEEeC
Q psy14257 534 NHDSLTHPFAIALFE---NHVYWTDW 556 (841)
Q Consensus 534 ~~~~l~~P~gla~~~---~~lY~td~ 556 (841)
....+..|.++++.. ++||+...
T Consensus 229 d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 229 DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCceeeccceeeeccccCceEEEEEC
Confidence 766689999999976 99999863
No 43
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.40 E-value=0.00032 Score=77.63 Aligned_cols=325 Identities=13% Similarity=0.088 Sum_probs=170.6
Q ss_pred CccccccccccccEEEEeccccceee-ecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 228 RHELRGVDLRTFNVIALISSLKNTIA-LDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 228 ~~~I~~~~~~~~~~~~l~~~~~~~~a-vd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+.+..++..+.+....++....+.+ +.|..+.+ .+|.++ ..+.|.++++..+. .... +..+. .|+|+|+.+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr--~~yv~~-rdg~vsviD~~~~~--~v~~-i~~G~-~~~~i~~s~ 87 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR--YLYVAN-RDGTVSVIDLATGK--VVAT-IKVGG-NPRGIAVSP 87 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS--EEEEEE-TTSEEEEEETTSSS--EEEE-EE-SS-EEEEEEE--
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC--EEEEEc-CCCeEEEEECCccc--EEEE-EecCC-CcceEEEcC
Confidence 46677777776655444444344333 34444333 499986 57899999887654 2333 33443 799999998
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCc------CCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNI------QWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~------~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
.++ |++.+++.. +.+...+.. .+.++.+..... .++.+|.-.+.+...+++-.+.+.|+.+++.
T Consensus 88 DG~--~~~v~n~~~-------~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 88 DGK--YVYVANYEP-------GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp TTT--EEEEEEEET-------TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CCC--EEEEEecCC-------CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 664 555555432 366666643 333333322211 2345676666666666777788999999976
Q ss_pred CCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCC-CCCc--eeEEEcCCCC
Q psy14257 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD-MESP--RAIALDPRFG 456 (841)
Q Consensus 380 G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~-l~~P--~giavd~~~g 456 (841)
......+...+.-..+... .+|..++.+|.+....+.|.+.++.......++..+ ..+| .+--.||..|
T Consensus 159 d~~~~~~~~i~~g~~~~D~--------~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g 230 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHDG--------GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG 230 (369)
T ss_dssp TSSCEEEEEEE--TTEEEE--------EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred cccccceeeeccccccccc--------ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence 5433322222111111111 233344677887778889999998776555554432 2222 3334788777
Q ss_pred eEEEEecCCCCCeEEEecC------CCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE---eCCCCeEEEEEcCCCe
Q psy14257 457 LLFWTDWDSKAPRIERCSM------SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI---DAKSDSIHTVTYDGKD 527 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~l------dG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~---d~~~~~I~~~~~dG~~ 527 (841)
.+ |+..+.....|-.... +-...+++... .....|-.+...+.+.+||+. ....+.|..+|...-.
T Consensus 231 ~v-w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I----~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 231 PV-WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI----PTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EE-EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE----E-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred eE-EeeccccceecccccCCccccchhhcCeEEEEE----ECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 65 5443322233222222 22333344332 123455677788777777665 3556799999887653
Q ss_pred eEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCC-eEEEEeccCCcceEEEecccCCCce
Q psy14257 528 HHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTN-SVIRANKWNGSDVTLIQRTLTQPFI 584 (841)
Q Consensus 528 ~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~-~i~~~~~~~g~~~~~i~~~~~~p~~ 584 (841)
...-+.... -..+..+.+ .+.++|++.|..+ +|..++-.+.+....|. +..|.|
T Consensus 306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G 362 (369)
T PF02239_consen 306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTG 362 (369)
T ss_dssp EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEE
T ss_pred eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCe
Confidence 322111100 112555666 4579999999998 99999988888777776 566666
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.37 E-value=0.0002 Score=80.11 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=112.7
Q ss_pred ccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccc---eEEEEe-CCCCCccceEEeee----cCc
Q psy14257 239 FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSN---IDVVVQ-TGLSTAEGLAVDWI----GKN 310 (841)
Q Consensus 239 ~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~---~~~~~~-~~l~~p~giavD~~----~~~ 310 (841)
...+.++.++..+.+|.|... ++ ||++.-..++|++++..++.... ...++. .+...+.|||++|. ..|
T Consensus 20 f~~~~va~GL~~Pw~maflPD-G~--llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n 96 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPD-NQ--LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGN 96 (454)
T ss_pred cEEEEEECCCCCceEEEEcCC-Ce--EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCC
Confidence 456778889999999999875 45 99988767999988654432110 111222 25667899999975 344
Q ss_pred --eeEEEeeecCCCCCCCCCCEEEEccCCC-----cccccccc----CcCCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 311 --LYMFWAFWSLSPSNSSDGGIEKAGMHGE-----NRSPLVTK----NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 311 --~y~~~td~~~~~~~~~~~~I~~~~~dG~-----~~~~l~~~----~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
+|+++|.-..........+|.|+.++.. ..++|+.. ..+.-..|+++++ ++||++--..+.-...+..
T Consensus 97 ~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~~~n~~ 175 (454)
T TIGR03606 97 PYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQGANFF 175 (454)
T ss_pred cEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCCccccc
Confidence 4555443211100012458999887632 12223221 2344556888875 4688875543210000000
Q ss_pred CCccEEEEeeeeecCCCccccCCCCCCccccccceEE--EEecCCCcEEEEccCCce----------EEEEecCCCCCce
Q psy14257 380 GSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLY--WVESNLDQIEVAKLSGQF----------RRTLIAGDMESPR 447 (841)
Q Consensus 380 G~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY--~tD~~~~~I~v~~~~G~~----------~~~l~~~~l~~P~ 447 (841)
.....+ .++.. ..+- =.....++|.+++.||+. +..+.+-++.+|.
T Consensus 176 ~~~~aQ-------------~~~~~---------~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~ 233 (454)
T TIGR03606 176 LPNQAQ-------------HTPTQ---------QELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQ 233 (454)
T ss_pred Ccchhc-------------ccccc---------ccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccc
Confidence 000000 00000 0000 001235789999999863 2345566889999
Q ss_pred eEEEcCCCCeEEEEecCC
Q psy14257 448 AIALDPRFGLLFWTDWDS 465 (841)
Q Consensus 448 giavd~~~g~Ly~td~~~ 465 (841)
+|++|| .|.||.+|.+.
T Consensus 234 Gla~dp-~G~Lw~~e~Gp 250 (454)
T TIGR03606 234 GLAFTP-DGTLYASEQGP 250 (454)
T ss_pred eeEECC-CCCEEEEecCC
Confidence 999999 69999999764
No 45
>KOG4260|consensus
Probab=98.35 E-value=8.1e-07 Score=87.89 Aligned_cols=131 Identities=27% Similarity=0.572 Sum_probs=85.6
Q ss_pred CCCCCCcccCCCCCCCc--cccCCCCCCCCCCccCCCCCCCCC---------CCCCCCCcccCCCCCeEec-CCCCCCCC
Q psy14257 52 CDGQPDCGLNDTSDEDH--CVNDCTDWSDETNCTHSGNRTISA---------PACEPHEFDCQDVLRTCIP-KALVCDGE 119 (841)
Q Consensus 52 Cdg~~dC~~~d~sde~~--C~~dC~~~~de~~C~~c~~~~~c~---------~~C~~~~~~C~~~~~~Ci~-~~~~Cdg~ 119 (841)
|.|.-.|. +|||-+.. | .|..|-....|..|.+..|-. ..|.. .|. +.|.. .+.-|.
T Consensus 152 C~GnG~C~-GdGsR~GsGkC--kC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~---~C~---~~Csg~~~k~C~-- 220 (350)
T KOG4260|consen 152 CFGNGSCH-GDGSREGSGKC--KCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHE---GCL---GVCSGESSKGCS-- 220 (350)
T ss_pred cCCCCccc-CCCCCCCCCcc--cccCCCCCccccccchHHHHhhcccccchhhhhhh---hhh---cccCCCCCCChh--
Confidence 55666665 45655543 3 566666666777765554410 12221 121 22322 245563
Q ss_pred CCCCCCC--CCccc---ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccccccccCC-CCCc---cCceeec
Q psy14257 120 PACFNGE--DEMFC---DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA-WGTC---SQDCEPS 188 (841)
Q Consensus 120 ~~C~~g~--de~~C---~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~-~~~C---s~~C~~~ 188 (841)
.|..|+ ||..| |||+..+.+|. +.|+|+.|||.|.+.+||+- ++++|+. ...| ...|.++
T Consensus 221 -kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni 291 (350)
T KOG4260|consen 221 -KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNI 291 (350)
T ss_pred -hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccC
Confidence 689998 77789 89998877884 69999999999999999973 2556641 1334 2478898
Q ss_pred CCCCceEEeecCCeee
Q psy14257 189 VSNNSYKCTCHAGYEL 204 (841)
Q Consensus 189 ~~~g~~~C~C~~G~~l 204 (841)
.+.|+|.|..|+..
T Consensus 292 --~~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 292 --DGQYRCVCFSGLII 305 (350)
T ss_pred --CccEEEEeccccee
Confidence 99999999998764
No 46
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00033 Score=78.98 Aligned_cols=246 Identities=7% Similarity=-0.002 Sum_probs=148.8
Q ss_pred eeEEEec-C--CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcc
Q psy14257 264 MVFWTDV-I--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340 (841)
Q Consensus 264 ~lyw~d~-~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~ 340 (841)
.+|++.. . ..+|+.++.+|. ..+.+...+ .-...+..+.++.+.+|.+.-+ ..+.|++.++.+..+
T Consensus 157 ~~~v~~~~~~~~~~l~~~d~dg~---~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~------~~~~Iyv~dl~tg~~ 225 (419)
T PRK04043 157 KVVFSKYTGPKKSNIVLADYTLT---YQKVIVKGG--LNIFPKWANKEQTAFYYTSYGE------RKPTLYKYNLYTGKK 225 (419)
T ss_pred EEEEEEccCCCcceEEEECCCCC---ceeEEccCC--CeEeEEECCCCCcEEEEEEccC------CCCEEEEEECCCCcE
Confidence 3777763 2 347888877764 334444332 1223445555554444444321 134899999987777
Q ss_pred ccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEE
Q psy14257 341 SPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 341 ~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
+.+... -+.....++.+++++|.++-. ....|+.++++|+..+.+........ .-.....++.||++
T Consensus 226 ~~lt~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~----------~p~~SPDG~~I~F~ 294 (419)
T PRK04043 226 EKIASS-QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDV----------NGNFVEDDKRIVFV 294 (419)
T ss_pred EEEecC-CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccC----------ccEECCCCCEEEEE
Confidence 666531 112223567888888887654 34689999998887666543221000 00122335778887
Q ss_pred ecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC------CCCeEEEecCCCCCcEEEEEecccC
Q psy14257 419 ESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS------KAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 419 D~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~------~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
... ...|++.+++|...+.+...+... .+++|++++|.++.... ....|+.+++++...+.+..
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~----- 366 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA----- 366 (419)
T ss_pred ECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-----
Confidence 643 347999999876664444333222 37899988887776432 12589999998887666644
Q ss_pred CCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEcCCCCCCcc
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLSNHDSLTHP 541 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~~~~~l~~P 541 (841)
... -...++.++++.|+++... ...|..++++|.....+....+.+..|
T Consensus 367 ~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 367 NGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence 211 1236678888888887643 336999999998887776544444444
No 47
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.27 E-value=2.1e-06 Score=62.97 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=33.7
Q ss_pred CCCceEEEEeCCCCeEEEEecCCCcceEEEEecCCCce
Q psy14257 788 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKR 825 (841)
Q Consensus 788 l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~dG~~~ 825 (841)
+..|.|||+||..++|||+|+.. ..|+++++||+++
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~--~~I~~~~~~g~~~ 43 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGL--DVIEVANLDGTNR 43 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCC--CEEEEEeCCCCCC
Confidence 89999999999999999999998 4899999999874
No 48
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.27 E-value=0.0027 Score=70.36 Aligned_cols=326 Identities=9% Similarity=0.042 Sum_probs=160.4
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+-+|+++...++|.+++.+.......+..+..-+.++++.++.+++|++.. .+.|...++.-.....-+. .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~------~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIK------V 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEe------c
Confidence 445588999999999998764433333333223567888998889999974 4689999886444322222 3
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEEcCCC----CCCcceEEEE--ecCeEEEEeCCCCeEEEEe
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVLSNHD----SLTHPFAIAL--FENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~~~~~----~l~~P~gla~--~~~~lY~td~~~~~i~~~~ 565 (841)
...|.|+++.++++.||+++...+.+..+|.... -++++..... .-+++.+|.. ....++++-..++.|..++
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 4579999999999999999998999999987653 3344432210 0112334443 2344566667788888887
Q ss_pred ccCCcceEEEec-ccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee--
Q psy14257 566 KWNGSDVTLIQR-TLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-- 642 (841)
Q Consensus 566 ~~~g~~~~~i~~-~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-- 642 (841)
..+.+...+-.. ....|.+ .-+.++ ..+++++
T Consensus 157 y~d~~~~~~~~i~~g~~~~D-------------------------------------~~~dpd--------gry~~va~~ 191 (369)
T PF02239_consen 157 YSDPKNLKVTTIKVGRFPHD-------------------------------------GGFDPD--------GRYFLVAAN 191 (369)
T ss_dssp TTTSSCEEEEEEE--TTEEE-------------------------------------EEE-TT--------SSEEEEEEG
T ss_pred eccccccceeeecccccccc-------------------------------------cccCcc--------cceeeeccc
Confidence 655443322111 1011111 011111 2223332
Q ss_pred cCCeEEEEecCCCCccccceeecCCCCCc--eEEEEecCCCEEEEEECC-CCeEEEEEcccCceeeeeeeeeeeeccccc
Q psy14257 643 RPREIRGVDLEHPYYHTIPTISIPQVFSP--NNLNFDAANKKIYWTDQE-YNEVKRSSIVGGQIQLVVDAVFEFYLTPLS 719 (841)
Q Consensus 643 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~--~~v~~d~~~~~iyw~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~ 719 (841)
..+.|-.+++... .....+......++ .+--.+|..+.+|-+... ...|-.+..+--. +
T Consensus 192 ~sn~i~viD~~~~--k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~---v------------- 253 (369)
T PF02239_consen 192 GSNKIAVIDTKTG--KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS---V------------- 253 (369)
T ss_dssp GGTEEEEEETTTT--EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-----------------
T ss_pred ccceeEEEeeccc--eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc---c-------------
Confidence 1233444443321 11122223222222 222356666665433321 1111222111000 0
Q ss_pred ccccccCceEEEEeeCCCCCcceeEEeecCCcEEEE-ecCCCCCeEEEEecCCcce-EEEEcCCCCCCCcCCCceEEEEe
Q psy14257 720 KRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIA-VSSPTQSKIVVCNLEGEYQ-TTILSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 720 ~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~-~~~~~~~~I~v~~l~g~~~-~~~~~~~~~~~~~l~~p~~iavd 797 (841)
.....-...+.|-. .+.|..++..+.+++||+. -++...+.|.+++...-.. ..+... .-..+..+...
T Consensus 254 -~d~~~wkvv~~I~~--~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~------~~~~~~h~ef~ 324 (369)
T PF02239_consen 254 -HDDYAWKVVKTIPT--QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPG------PGKRVVHMEFN 324 (369)
T ss_dssp -STTTBTSEEEEEE---SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHH------HT--EEEEEE-
T ss_pred -chhhcCeEEEEEEC--CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEecc------CCCcEeccEEC
Confidence 00001111333322 3456889999999999887 1113467899988876532 222211 01358899999
Q ss_pred CCCCeEEEEecCCCcceEEEEec
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFM 820 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~ 820 (841)
+...++|.+.|..+ ++|...+.
T Consensus 325 ~dG~~v~vS~~~~~-~~i~v~D~ 346 (369)
T PF02239_consen 325 PDGKEVWVSVWDGN-GAIVVYDA 346 (369)
T ss_dssp TTSSEEEEEEE--T-TEEEEEET
T ss_pred CCCCEEEEEEecCC-CEEEEEEC
Confidence 99999999999876 35555443
No 49
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.25 E-value=6.3e-07 Score=61.33 Aligned_cols=32 Identities=56% Similarity=1.315 Sum_probs=29.4
Q ss_pred CCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCC
Q psy14257 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66 (841)
Q Consensus 32 C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde 66 (841)
|...+|+|. ++.|||..++|||..||. |+|||
T Consensus 2 C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~--dgsDE 33 (33)
T smart00192 2 CPPGEFQCD-NGRCIPLSWVCDGVDDCS--DGSDE 33 (33)
T ss_pred CCCCeEECC-CCCEECchhhCCCcCcCc--CCCCC
Confidence 666799998 888999999999999999 99987
No 50
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.19 E-value=8.6e-07 Score=62.12 Aligned_cols=37 Identities=54% Similarity=1.235 Sum_probs=33.3
Q ss_pred CCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 93 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
++|.+++|.|.+ +.||+..++|||..+|.+|+||..|
T Consensus 1 ~~C~~~~f~C~~--~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 1 PTCPPGEFRCGN--GQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSSTTEEEETT--SSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred CcCcCCeeEcCC--CCEEChHHcCCCCCCCCCCcccccC
Confidence 358889999998 6799999999999999999999765
No 51
>KOG1219|consensus
Probab=98.18 E-value=1.7e-06 Score=105.80 Aligned_cols=97 Identities=26% Similarity=0.614 Sum_probs=79.1
Q ss_pred cccCCCCCeEecC---CCCCCCCCCCCCCCCCccc----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 100 FDCQDVLRTCIPK---ALVCDGEPACFNGEDEMFC----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 100 ~~C~~~~~~Ci~~---~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
.+|+++ |.|++. .+.| .|+..|.+..| ..|.. .+|. ..|....++|.|.|+.||. |..|+
T Consensus 3870 npCqhg-G~C~~~~~ggy~C----kCpsqysG~~CEi~~epC~s--nPC~~GgtCip~~n~f~CnC~~gyT----G~~Ce 3938 (4289)
T KOG1219|consen 3870 NPCQHG-GTCISQPKGGYKC----KCPSQYSGNHCEIDLEPCAS--NPCLTGGTCIPFYNGFLCNCPNGYT----GKRCE 3938 (4289)
T ss_pred CcccCC-CEecCCCCCceEE----eCcccccCcccccccccccC--CCCCCCCEEEecCCCeeEeCCCCcc----Cceee
Confidence 479999 999987 6789 99999999889 55764 3674 5899999999999999996 77887
Q ss_pred c--ccccCCCCCcc--CceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 171 Y--LHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 171 ~--~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
. ++||. ...|. .+|.|. .|+|.|.|.+||. +++|.+.
T Consensus 3939 ~~Gi~eCs-~n~C~~gg~C~n~--~gsf~CncT~g~~----gr~c~~~ 3979 (4289)
T KOG1219|consen 3939 ARGISECS-KNVCGTGGQCINI--PGSFHCNCTPGIL----GRTCCAE 3979 (4289)
T ss_pred cccccccc-cccccCCceeecc--CCceEeccChhHh----cccCccc
Confidence 4 67894 45774 499999 9999999999986 4566443
No 52
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.13 E-value=0.0012 Score=70.30 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=121.2
Q ss_pred eeEEEeccCCEEEEEeCCC------------CeEEEEEcCCCee-EEEEcCCCCC---CcceEEEEec-------CeEEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKS------------DSIHTVTYDGKDH-HVVLSNHDSL---THPFAIALFE-------NHVYW 553 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~------------~~I~~~~~dG~~~-~~i~~~~~~l---~~P~gla~~~-------~~lY~ 553 (841)
.++.+| ..++|++.|.+. -+|..+|+....+ +++.-....+ .....|+++. +++|+
T Consensus 4 ~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred cEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 577888 578888888653 3788888876543 3322221112 1234566654 68999
Q ss_pred EeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccc
Q psy14257 554 TDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633 (841)
Q Consensus 554 td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~ 633 (841)
||.....|+.++..+|+...+...... | .+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~-~--------------------------~p----------------------- 112 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFS-P--------------------------DP----------------------- 112 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCT-T--------------------------S------------------------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcc-e--------------------------ec-----------------------
Confidence 999999999999988887776553211 0 00
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEec---CCCEEEEEECCCCeEEEEEcccCceeeeeeee
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDA---ANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAV 710 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~---~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~ 710 (841)
....+.+ ....+ ... ..+.+++-.+ .++.|||.-....+++++...--.
T Consensus 113 -~~~~~~i--~g~~~--~~~---------------dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~-------- 164 (287)
T PF03022_consen 113 -DAGPFTI--GGESF--QWP---------------DGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR-------- 164 (287)
T ss_dssp -SSEEEEE--TTEEE--EET---------------TSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC--------
T ss_pred -cccceec--cCceE--ecC---------------CCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh--------
Confidence 0000111 01110 000 0022333322 447899999888889998753110
Q ss_pred eeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc----ceEEEEcCCCCCCC
Q psy14257 711 FEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE----YQTTILSNESNDTS 786 (841)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~----~~~~~~~~~~~~~~ 786 (841)
.+..........+.+.+-.. .....|+++|. .++||++ +..++.|.+.+.++. ..++++.+. -
T Consensus 165 -----~~~~~~~~~~~~~v~~lG~k-~~~s~g~~~D~-~G~ly~~--~~~~~aI~~w~~~~~~~~~~~~~l~~d~----~ 231 (287)
T PF03022_consen 165 -----DPSLSDAQALASQVQDLGDK-GSQSDGMAIDP-NGNLYFT--DVEQNAIGCWDPDGPYTPENFEILAQDP----R 231 (287)
T ss_dssp -----STT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEE--ECCCTEEEEEETTTSB-GCCEEEEEE-C----C
T ss_pred -----Cccccccccccccceecccc-CCCCceEEECC-CCcEEEe--cCCCCeEEEEeCCCCcCccchheeEEcC----c
Confidence 00000000001112232221 14568999998 7799999 568999999999993 345666641 1
Q ss_pred cCCCceEEEEeC-CCCeEEEEecC
Q psy14257 787 TLSKISSIAVWP-VKGKMFWSNVT 809 (841)
Q Consensus 787 ~l~~p~~iavd~-~~g~lyw~d~~ 809 (841)
.|..|.+|++++ ..|+||++...
T Consensus 232 ~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 232 TLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp -GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eeeccceeeeccccCceEEEEECc
Confidence 288999999997 45899998753
No 53
>KOG4499|consensus
Probab=98.12 E-value=0.00037 Score=68.64 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=67.6
Q ss_pred ecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec--CC---CCCcEEEEEecc-cCCCCCCceeEEEeccCCEEEEEe
Q psy14257 439 IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS--MS---GEHRSVIVRVDL-LTSRGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 439 ~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~--ld---G~~~~~i~~~~~-~~~~~~~P~glalD~~~~~LYw~d 512 (841)
+...+.-|+||+-|.+...+|++|.. +..|...+ .. -++++++++..- .+..-..|.|++||. ++.||++-
T Consensus 153 i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~ 229 (310)
T KOG4499|consen 153 IWNCVGISNGLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVAT 229 (310)
T ss_pred eehhccCCccccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEE
Confidence 44566779999999999999999977 77884444 43 357888876421 122345799999995 89999999
Q ss_pred CCCCeEEEEEcCC-CeeEEEE
Q psy14257 513 AKSDSIHTVTYDG-KDHHVVL 532 (841)
Q Consensus 513 ~~~~~I~~~~~dG-~~~~~i~ 532 (841)
...++|+++++.. +-...+.
T Consensus 230 ~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEE
Confidence 9999999999864 4444443
No 54
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.12 E-value=5.3e-06 Score=60.78 Aligned_cols=40 Identities=35% Similarity=0.722 Sum_probs=35.5
Q ss_pred EeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc
Q psy14257 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773 (841)
Q Consensus 732 i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~ 773 (841)
++..++..|.|||+||.+++|||+ |...+.|++++++|..
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~--D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWT--DWGLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEE--eCCCCEEEEEeCCCCC
Confidence 455688999999999999999999 5678999999999975
No 55
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=98.11 E-value=1.7e-06 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.758 Sum_probs=22.8
Q ss_pred CcEEecCCCceecCCCCccccccc
Q psy14257 151 GFMCVCPRDMYLQPDLITCSYLHP 174 (841)
Q Consensus 151 ~~~C~C~~Gy~l~~d~~~C~~~~e 174 (841)
||+|.|++||+|.+++++|.|+||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 699999999999999999999986
No 56
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.00061 Score=77.87 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=138.7
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
.+|+.++.||.+.+.+... -..-...++.+++++|+|+... ...|+.++++++..+.+........ .
T Consensus 198 ~~l~i~d~dG~~~~~l~~~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~----------~ 266 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRS-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING----------A 266 (448)
T ss_pred eEEEEEeCCCCCceEeecC-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC----------C
Confidence 4788888999877765432 1223457888899999887543 4579999998877665543221100 0
Q ss_pred CccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 406 EDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
.+....++.|+++... ...|++.++++...+.+.. ........+++|++.+|+++........|+++++++...+.+
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 1233345678776433 3368888988766554433 223445678888888888775433467999999986655544
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC--
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN-- 559 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~-- 559 (841)
.. ......+.++.++++.||++.... ..|+.+++++...+.+.... .-..| .++..+..|+++....+
T Consensus 346 t~------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~-~d~~p-s~spdG~~I~~~~~~~g~~ 417 (448)
T PRK04792 346 TF------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR-LDESP-SVAPNGTMVIYSTTYQGKQ 417 (448)
T ss_pred ec------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC-CCCCc-eECCCCCEEEEEEecCCce
Confidence 32 112234567888888998876543 37888999887766553321 11234 34445677777664433
Q ss_pred eEEEEeccCCcceEEE
Q psy14257 560 SVIRANKWNGSDVTLI 575 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i 575 (841)
.++.++. +|.....+
T Consensus 418 ~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 418 VLAAVSI-DGRFKARL 432 (448)
T ss_pred EEEEEEC-CCCceEEC
Confidence 2555554 45544433
No 57
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.001 Score=75.98 Aligned_cols=230 Identities=13% Similarity=0.041 Sum_probs=132.2
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|.. .+.+.. +-.....+++.|.++.+++ +... .....|++.++++...+.+.... .....
T Consensus 199 ~l~i~d~dG~~---~~~l~~-~~~~~~~p~wSPDG~~La~--~s~~-----~g~~~L~~~dl~tg~~~~lt~~~-g~~~~ 266 (448)
T PRK04792 199 QLMIADYDGYN---EQMLLR-SPEPLMSPAWSPDGRKLAY--VSFE-----NRKAEIFVQDIYTQVREKVTSFP-GINGA 266 (448)
T ss_pred EEEEEeCCCCC---ceEeec-CCCcccCceECCCCCEEEE--EEec-----CCCcEEEEEECCCCCeEEecCCC-CCcCC
Confidence 45556665532 223322 2222334566666544433 3211 11247999998876555443221 22346
Q ss_pred EEEEccCCEEEEEeCCC--CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSHL--NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~~--~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-... ..|+.++++++..+.+..... .+. ..+....++.|+++... ...|++++
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~--~~~--------~p~wSpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA--IDT--------EPSWHPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC--Ccc--------ceEECCCCCEEEEEECCCCCceEEEEE
Confidence 78999999998864433 369999998876655432110 000 01122234667776432 35788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+...+ ....+.++.|+..+||++.......+|++.++++...+.+.. ... ....++.+.++.|+
T Consensus 337 l~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~-----~~~--d~~ps~spdG~~I~ 408 (448)
T PRK04792 337 LASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS-----TRL--DESPSVAPNGTMVI 408 (448)
T ss_pred CCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC-----CCC--CCCceECCCCCEEE
Confidence 8765444433222 223456889998899888754335689999998876655433 111 11235777788888
Q ss_pred EEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 510 WIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 510 w~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
++.... ..|+.++.+|...+.+..
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEecCCceEEEEEECCCCceEECcC
Confidence 866433 358888999987776643
No 58
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.10 E-value=1.5e-05 Score=67.86 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=58.3
Q ss_pred eeEEEcCCCCeEEEEecCC---------------CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE
Q psy14257 447 RAIALDPRFGLLFWTDWDS---------------KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI 511 (841)
Q Consensus 447 ~giavd~~~g~Ly~td~~~---------------~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~ 511 (841)
++|+|++..|.||+||... .++++.+.++.....+++.. ++..|||+++.+++..|+++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE------EESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh------CCCccCeEEEcCCCCEEEEE
Confidence 4789998889999999643 36789999998877777776 78999999999999999999
Q ss_pred eCCCCeEEEEEcCC
Q psy14257 512 DAKSDSIHTVTYDG 525 (841)
Q Consensus 512 d~~~~~I~~~~~dG 525 (841)
+....+|.++-+.|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999998877
No 59
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.08 E-value=1.8e-06 Score=59.87 Aligned_cols=35 Identities=51% Similarity=1.187 Sum_probs=31.7
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
|.+++|.|.+ +.||+..++|||..+|++|+||..|
T Consensus 1 C~~~~f~C~~--~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCAN--GRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCC--CCeeCHHHcCCCccCCCCCcccccC
Confidence 5567899988 9999999999999999999999765
No 60
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.00 E-value=0.00025 Score=79.38 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=106.7
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee----cCCCccccCCCCCCccccccceEEEE
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL----GSDSRVGIPNCRPEDNLWIGKNLYWV 418 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~----~~~~~~~i~~~~~~avdw~~~~LY~t 418 (841)
++.+.|..|.+|++.++ ++||++....++|++++.++...+.+..+..+ +....++++..-..+-...++.||++
T Consensus 24 ~va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34568999999999885 68999999889999998776555444333211 12222333211000000234789987
Q ss_pred ec---------CCCcEEEEccCCc-----eEEEEecC----CCCCceeEEEcCCCCeEEEEecCC---------------
Q psy14257 419 ES---------NLDQIEVAKLSGQ-----FRRTLIAG----DMESPRAIALDPRFGLLFWTDWDS--------------- 465 (841)
Q Consensus 419 D~---------~~~~I~v~~~~G~-----~~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~--------------- 465 (841)
-+ ...+|.++.++.. ..++++.. ..+.-..|+++|+ |+||++--..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPD-G~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPD-GKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCC-CcEEEEECCCCCCCcccccCcchhc
Confidence 42 2457888887631 12344432 1234567999986 8899984221
Q ss_pred ---------------CCCeEEEecCCCCC----------cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC
Q psy14257 466 ---------------KAPRIERCSMSGEH----------RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516 (841)
Q Consensus 466 ---------------~~~~I~r~~ldG~~----------~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~ 516 (841)
..++|.|++.||+- +..|.. .+++.|.||++|+ +++||.+|.+.+
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA-----~G~RNp~Gla~dp-~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT-----YGHRNPQGLAFTP-DGTLYASEQGPN 251 (454)
T ss_pred cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE-----EeccccceeEECC-CCCEEEEecCCC
Confidence 13489999999973 234444 5889999999998 799999997654
No 61
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.0019 Score=72.98 Aligned_cols=217 Identities=7% Similarity=-0.059 Sum_probs=135.2
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCE-EEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDI-LYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~-lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~ 403 (841)
..+|+.++.||.+.+++.... .-....+.+++++ +|++... ...|+.+++.++.++.+.........
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~-------- 237 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVV-------- 237 (419)
T ss_pred cceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEe--------
Confidence 358999999999888776543 2235677777775 7776554 57899999998888777532111000
Q ss_pred CCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE
Q psy14257 404 RPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS 481 (841)
Q Consensus 404 ~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~ 481 (841)
.++...++.|.++.. +...|+++++++...+.+..... .-..-.+.|+...||++......+.|++++++|...+
T Consensus 238 --~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 238 --SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred --eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 011122356776543 34689999988776554433221 1123368888778888864444679999999987765
Q ss_pred EEEEecccCCCCCCceeEEEeccCCEEEEEeCCC--------CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEE
Q psy14257 482 VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--------DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 482 ~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--------~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~ 553 (841)
.+.. ..... ..+++++++|.++.... ..|+.+++++...+.+.... ....| ..+-.+..||+
T Consensus 315 rlt~-----~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p-~~SPDG~~I~f 384 (419)
T PRK04043 315 QVVF-----HGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFP-RFSSDGGSIMF 384 (419)
T ss_pred eCcc-----CCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCe-EECCCCCEEEE
Confidence 5543 12122 37788888887775432 48999999988776665432 12222 34445667777
Q ss_pred EeCCC--CeEEEEec
Q psy14257 554 TDWRT--NSVIRANK 566 (841)
Q Consensus 554 td~~~--~~i~~~~~ 566 (841)
+.... ..+..++.
T Consensus 385 ~~~~~~~~~L~~~~l 399 (419)
T PRK04043 385 IKYLGNQSALGIIRL 399 (419)
T ss_pred EEccCCcEEEEEEec
Confidence 65432 23556665
No 62
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.99 E-value=0.0014 Score=71.73 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=87.7
Q ss_pred CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCC---CCC-eEEEe---------------------cCCC
Q psy14257 423 DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS---KAP-RIERC---------------------SMSG 477 (841)
Q Consensus 423 ~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~---~~~-~I~r~---------------------~ldG 477 (841)
..|...+.++...++ .+-++.+|.|++.+|..|.||.++.+. ..+ .|.+. ..++
T Consensus 219 a~~~~~d~p~~~~~i-~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~ 297 (399)
T COG2133 219 AGIIPADNPFPNSEI-WSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDG 297 (399)
T ss_pred CcccccCCCCCCcce-EEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCC
Confidence 345556666665443 345789999999999999999999774 101 01111 0111
Q ss_pred CCcEEEEEecccCCCCCCceeEEEeccC------CEEEEEeCCCCeEEEEEcCCC---eeEEEEcCCCCCCcceEEEE-e
Q psy14257 478 EHRSVIVRVDLLTSRGAWPNGLTLDYQL------TRIYWIDAKSDSIHTVTYDGK---DHHVVLSNHDSLTHPFAIAL-F 547 (841)
Q Consensus 478 ~~~~~i~~~~~~~~~~~~P~glalD~~~------~~LYw~d~~~~~I~~~~~dG~---~~~~i~~~~~~l~~P~gla~-~ 547 (841)
.....+......-..-..|.||++=.-+ +.||++..+.-.+.+.+++|. ...-++... ...+|.+|++ .
T Consensus 298 ~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d-~~gR~~dV~v~~ 376 (399)
T COG2133 298 TVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGD-LGGRPRDVAVAP 376 (399)
T ss_pred cccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecC-CCCcccceEECC
Confidence 1111111000000112346888884211 689988877777888999998 444455432 2368999999 5
Q ss_pred cCeEEEEeCC-CCeEEEEecc
Q psy14257 548 ENHVYWTDWR-TNSVIRANKW 567 (841)
Q Consensus 548 ~~~lY~td~~-~~~i~~~~~~ 567 (841)
+|.||+++.. +++|+|+...
T Consensus 377 DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 377 DGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred CCeEEEeecCCCCeEEEecCC
Confidence 7999999988 6699998753
No 63
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.0023 Score=73.11 Aligned_cols=229 Identities=11% Similarity=0.056 Sum_probs=134.2
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. .+.+. .+-.....+++.+.++.+++. ++. ...+.|++.++++...+.+... -+.-.+
T Consensus 183 ~l~~~d~dg~~---~~~lt-~~~~~v~~p~wSpDG~~lay~-s~~------~g~~~i~~~dl~~g~~~~l~~~-~g~~~~ 250 (435)
T PRK05137 183 RLAIMDQDGAN---VRYLT-DGSSLVLTPRFSPNRQEITYM-SYA------NGRPRVYLLDLETGQRELVGNF-PGMTFA 250 (435)
T ss_pred EEEEECCCCCC---cEEEe-cCCCCeEeeEECCCCCEEEEE-Eec------CCCCEEEEEECCCCcEEEeecC-CCcccC
Confidence 67777666543 22222 222233345555555444332 211 1235899999877655544321 122346
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-.. ...|+.++++++..+.+........ ..+....++.|+++... ...|++.+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~----------~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT----------SPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC----------ceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 7888888888776443 4569999998877665532111000 01122234667665432 34788999
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
++|...+.+.... ..-...++.|++.+|+++.......+|+..+++|...+.+.. . .....+++.+.++.||
T Consensus 321 ~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-----~--~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 321 ADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-----G--FLVEGPTWAPNGRVIM 392 (435)
T ss_pred CCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-----C--CCCCCCeECCCCCEEE
Confidence 9887655544321 223446788998899887654334689999998876655432 1 1345677888888888
Q ss_pred EEeCCC-----CeEEEEEcCCCeeEEEE
Q psy14257 510 WIDAKS-----DSIHTVTYDGKDHHVVL 532 (841)
Q Consensus 510 w~d~~~-----~~I~~~~~dG~~~~~i~ 532 (841)
++-... ..|+.++++|...+.+.
T Consensus 393 ~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEccCCCCCcceEEEEECCCCceEEcc
Confidence 765322 47999999998776554
No 64
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.00098 Score=68.36 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=132.0
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEE-EecCCCcEEEEc
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VESNLDQIEVAK 429 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~~~~~I~v~~ 429 (841)
-++|++++++++||-+--+--.|..++.+|.-.+.+- +.. ...|+++.|++++.|+ +|....++.++.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g----------~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTG----------FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccc----------cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 6799999999999999888888999999997655431 111 1246789999999996 677788888877
Q ss_pred cCCc--eEEE-----EecCC---CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec---ccCCCCCCc
Q psy14257 430 LSGQ--FRRT-----LIAGD---MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD---LLTSRGAWP 496 (841)
Q Consensus 430 ~~G~--~~~~-----l~~~~---l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~---~~~~~~~~P 496 (841)
++-. .... -+... -..=.|+|-||.++.||++-.. +--+|+.....-+....-+... ...-.+..-
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 6543 2211 11111 1234699999999999998754 2347777775432211111100 000123446
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC------CCCCCcceEEEEe-cCeEEEEeCC
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN------HDSLTHPFAIALF-ENHVYWTDWR 557 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~------~~~l~~P~gla~~-~~~lY~td~~ 557 (841)
.|+.+|..++.|++.-.....+..++.+|.-+..+.-. ...+++|-|||.+ +|.||++.-.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 89999999999999888889999999999865544221 1236789999995 5899988643
No 65
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.004 Score=71.12 Aligned_cols=221 Identities=10% Similarity=-0.004 Sum_probs=135.8
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
..+|+.++.+|...+.+... -..-...++.+++++|+++.. ....|+..+++++.++.+........
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~---------- 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDG-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF---------- 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecC-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc----------
Confidence 45899999999888776532 223446778888888887754 34689999998877665543211000
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.|+++-.. ...|++.++++...+.+.. ........++.|+..+|+++.......+|++.+++|...+.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 01222334677766433 4568888988776655443 22234557888887777766533235799999999877666
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRT 558 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~ 558 (841)
+.. .. ..-...++.+++++|+++.... ..|..++++|...+.+.... . ...+++ .+..||++-...
T Consensus 329 lt~-----~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~---~~~p~~spDG~~i~~~~~~~ 398 (435)
T PRK05137 329 ISF-----GG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-L---VEGPTWAPNGRVIMFFRQTP 398 (435)
T ss_pred eec-----CC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-C---CCCCeECCCCCEEEEEEccC
Confidence 643 11 1123456777888888876433 47888999887765553321 1 223344 456777754322
Q ss_pred -----CeEEEEeccCC
Q psy14257 559 -----NSVIRANKWNG 569 (841)
Q Consensus 559 -----~~i~~~~~~~g 569 (841)
..++.++..++
T Consensus 399 ~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 399 GSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCcceEEEEECCCC
Confidence 35777776433
No 66
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.004 Score=71.06 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
.|++.++++...+.+...+ .....++++|+..+|+++........|+..++++...+.+.. .. .....++.+
T Consensus 317 ~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-----~~--~~~~p~~sp 388 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-----GS--LDESPSFAP 388 (433)
T ss_pred eEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-----CC--CCCCceECC
Confidence 4556665544333332222 234467899998899887643224579999987766554432 11 223457777
Q ss_pred cCCEEEEEeCC--CCeEEEEEcCCCeeEEEEc
Q psy14257 504 QLTRIYWIDAK--SDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 504 ~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~ 533 (841)
.+..|+++... ...|+.++++|...+.+..
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 77788876543 4579999999987766643
No 67
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.87 E-value=0.0038 Score=64.59 Aligned_cols=231 Identities=11% Similarity=0.116 Sum_probs=140.1
Q ss_pred cccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec-----CCccEEEEeeee----ecCCCccccCCCCCCcc----
Q psy14257 342 PLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD-----GSERTVSFNLEV----LGSDSRVGIPNCRPEDN---- 408 (841)
Q Consensus 342 ~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld-----G~~~~~~~~~~~----~~~~~~~~i~~~~~~av---- 408 (841)
..+...+..|.||++.+ ++.++++|...+..-.++.+ |.....+..+.. ..+..+.|+-.....++
T Consensus 16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 33456788999999987 46888899988888887777 444333322210 00111111111100000
Q ss_pred ---ccccceEEEEecCCCcEEEEccC--Cc---eEEEEecCC--CCCceeEEEcCC--CCeEEEEecCCCCCeEEEecCC
Q psy14257 409 ---LWIGKNLYWVESNLDQIEVAKLS--GQ---FRRTLIAGD--MESPRAIALDPR--FGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 409 ---dw~~~~LY~tD~~~~~I~v~~~~--G~---~~~~l~~~~--l~~P~giavd~~--~g~Ly~td~~~~~~~I~r~~ld 476 (841)
.-....|+.++ .++|.-.+.. -. ...+++... -.--+|||+-.. ..+||-+|.. +++|..++
T Consensus 95 ~g~~~~a~Fif~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~--~g~IDVFd-- 168 (336)
T TIGR03118 95 EGITGPSRFLFVTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR--QGRIDVFK-- 168 (336)
T ss_pred CCcccceeEEEEeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC--CCceEEec--
Confidence 00112355554 4566655542 12 111223211 223467887754 5799999997 78998884
Q ss_pred CCCcEEEEEeccc-C--CCCCCceeEEEeccCCEEEEEe-------------CCCCeEEEEEcCCCeeEEEEcCCCCCCc
Q psy14257 477 GEHRSVIVRVDLL-T--SRGAWPNGLTLDYQLTRIYWID-------------AKSDSIHTVTYDGKDHHVVLSNHDSLTH 540 (841)
Q Consensus 477 G~~~~~i~~~~~~-~--~~~~~P~glalD~~~~~LYw~d-------------~~~~~I~~~~~dG~~~~~i~~~~~~l~~ 540 (841)
++.+++....... + ..-..|.+|.- .+++||++- .+.+.|..++++|..++.+.+. +.|..
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNa 245 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNA 245 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccC
Confidence 4433322210000 0 12245666654 479999974 3456999999999999998765 46899
Q ss_pred ceEEEE-------ecCeEEEEeCCCCeEEEEeccCCcceEEEecccCCC
Q psy14257 541 PFAIAL-------FENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQP 582 (841)
Q Consensus 541 P~gla~-------~~~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p 582 (841)
|+||++ +.+.|.+.+...++|-..+..+|+.+-.+.....+|
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 999998 348999999999999999988888766555443333
No 68
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=97.86 E-value=7.6e-06 Score=78.02 Aligned_cols=57 Identities=40% Similarity=0.569 Sum_probs=49.5
Q ss_pred ccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCC---eEecCCCCCCCCCC---cccCCCCCC
Q psy14257 4 IIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL---RCIPLAWACDGQPD---CGLNDTSDE 66 (841)
Q Consensus 4 i~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~d---C~~~d~sde 66 (841)
|+.+.+.|+.-||.|||||- ....|..+.|.|.+.| .-||.++|=||.-| |= |||||
T Consensus 48 I~~~~iNDdyCDC~DGSDEP----GTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CC--DGSDE 110 (176)
T PF12999_consen 48 IPFSQINDDYCDCPDGSDEP----GTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICC--DGSDE 110 (176)
T ss_pred ecHHHccCcceeCCCCCCcc----ccccCcCceEeeccCCCCCceeehhhhcCCcCcccccC--CCCCC
Confidence 56778899999999999997 3567888899997555 68999999999999 99 99988
No 69
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.86 E-value=0.0029 Score=72.12 Aligned_cols=219 Identities=12% Similarity=0.088 Sum_probs=133.4
Q ss_pred CCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCC
Q psy14257 328 GGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
..|..++.+|...+.+.... ..-...++.+++++|+++... ...|+.++++++.++.+........ .
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~----------~ 252 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING----------A 252 (433)
T ss_pred EEEEEECCCCCCceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc----------C
Confidence 46888899988777765431 223467888888888888653 4579999998877766543211100 0
Q ss_pred CccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEE
Q psy14257 406 EDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 406 ~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i 483 (841)
.++...+++|+++-. +...|++.++++...+.+.. ........+++|+..+|+++........|++.++++...+.+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 123334567877643 33479999998766554432 222335678899877777764322357899999987655544
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCC--CC
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR--TN 559 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~--~~ 559 (841)
.. .......+++.++++.|+++.... ..|..+++++...+.+.... ....| .++-.+.+|+++... ..
T Consensus 332 t~------~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p-~~spdG~~i~~~s~~~g~~ 403 (433)
T PRK04922 332 TF------QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LDESP-SFAPNGSMVLYATREGGRG 403 (433)
T ss_pred ec------CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CCCCc-eECCCCCEEEEEEecCCce
Confidence 33 112344678888888998876433 36889999877665443321 11222 233345566666543 33
Q ss_pred eEEEEec
Q psy14257 560 SVIRANK 566 (841)
Q Consensus 560 ~i~~~~~ 566 (841)
.|+.++.
T Consensus 404 ~L~~~~~ 410 (433)
T PRK04922 404 VLAAVST 410 (433)
T ss_pred EEEEEEC
Confidence 5666665
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.84 E-value=0.0074 Score=68.83 Aligned_cols=229 Identities=9% Similarity=0.026 Sum_probs=131.3
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. ...+... -.....+++.+.++.++ ++... .....|++.++++...+.+.... +....
T Consensus 180 ~l~~~d~~g~~---~~~l~~~-~~~~~~p~wSpDG~~la--~~s~~-----~~~~~l~~~~l~~g~~~~l~~~~-g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGAR---AVTLLQS-REPILSPRWSPDGKRIA--YVSFE-----QKRPRIFVQNLDTGRREQITNFE-GLNGA 247 (430)
T ss_pred EEEEECCCCCC---ceEEecC-CCceeeeeECCCCCEEE--EEEcC-----CCCCEEEEEECCCCCEEEccCCC-CCcCC
Confidence 36666666542 2233222 11224455665554443 22211 12347999998876655553221 22345
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~~I~v~~ 429 (841)
.++.+++++|+++-.. ...|+.++++++..+.+........ .......++.||++... ...|++.+
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~----------~~~~spDg~~i~f~s~~~g~~~iy~~d 317 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT----------EPFWGKDGRTLYFTSDRGGKPQIYKVN 317 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC----------CeEECCCCCEEEEEECCCCCceEEEEE
Confidence 7888888999876543 3479999998877665432110000 00122234677776432 34788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+...+ ......+++|..++|+++........|+..++++...+.+.. .. ......+.+.++.|+
T Consensus 318 ~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-----~~--~~~~p~~spdg~~i~ 389 (430)
T PRK00178 318 VNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-----TS--LDESPSVAPNGTMLI 389 (430)
T ss_pred CCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-----CC--CCCCceECCCCCEEE
Confidence 8765444433222 223346788998899988754234579999998776655543 11 122346777788888
Q ss_pred EEeCC--CCeEEEEEcCCCeeEEEE
Q psy14257 510 WIDAK--SDSIHTVTYDGKDHHVVL 532 (841)
Q Consensus 510 w~d~~--~~~I~~~~~dG~~~~~i~ 532 (841)
++... ...|+.++++|...+.+.
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEecCCceEEEEEECCCCceEECc
Confidence 87643 357888999887765553
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.84 E-value=0.0042 Score=70.45 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=135.4
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC--CeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL--NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~--~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
...|+..+.+|...+.+.... ..-...++.+++++|+|+.... ..|+.++++++..+.+........
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~---------- 237 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG---------- 237 (417)
T ss_pred cceEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc----------
Confidence 447889999988777765432 1223456888899999987643 678999988765554432210000
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.||++... ...|+..++++...+.+.... ......++.|+..+|+++........|++.++++...+.
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~ 316 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR 316 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 01222234668776543 346888888876554443221 222345678877788776533235689999998776555
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC-
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN- 559 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~- 559 (841)
+.. .......+++.+.++.|+++.... ..|..+++++...+.+.... ....| .++..+.+|+++....+
T Consensus 317 l~~------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~p-~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 317 LTF------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-LDESP-SFAPNGRMILYATTRGGR 388 (417)
T ss_pred eec------CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-CCCCc-eECCCCCEEEEEEeCCCc
Confidence 443 233456678888888888887543 37889999886665554321 12222 33445677877765443
Q ss_pred eEEEEeccCCcceE
Q psy14257 560 SVIRANKWNGSDVT 573 (841)
Q Consensus 560 ~i~~~~~~~g~~~~ 573 (841)
....+...+|....
T Consensus 389 ~~l~~~~~~g~~~~ 402 (417)
T TIGR02800 389 GVLGLVSTDGRFRA 402 (417)
T ss_pred EEEEEEECCCceee
Confidence 23334334454433
No 72
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.011 Score=67.21 Aligned_cols=227 Identities=10% Similarity=0.021 Sum_probs=130.2
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCE---EEEEeC-CCCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDI---LYWCDS-HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~---lYwaD~-~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
...|+.++.||.+.+.|....- .-..-++.+++++ +|++.. ....|+..+++|+..+.+.........
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~-~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~------- 235 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHS-LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLM------- 235 (428)
T ss_pred cceEEEEcCCCCCceEcccCCC-CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccc-------
Confidence 5689999999998888754311 1122367777654 345554 345799999999887776543221110
Q ss_pred CCCCccccccceEEEEecC--CCcEEEE--ccCC---ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC
Q psy14257 403 CRPEDNLWIGKNLYWVESN--LDQIEVA--KLSG---QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM 475 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~--~~~I~v~--~~~G---~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l 475 (841)
.++...++.|.|+-.. ...|++. ++++ ...+.+...........++.|++.+|+++.......+|+++++
T Consensus 236 ---p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 236 ---PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ---eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 0222334677776532 3355553 4332 2223333322223345689998777777653323578999988
Q ss_pred CCCC--cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE--ecC
Q psy14257 476 SGEH--RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FEN 549 (841)
Q Consensus 476 dG~~--~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~--~~~ 549 (841)
++.. .+.+.. ........++.+++++|+++... ...|+.+++++...+.+..... .....++ .+.
T Consensus 313 ~~~g~~~~~lt~------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~---~~~~p~wSpDG~ 383 (428)
T PRK01029 313 DPEGQSPRLLTK------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE---NKESPSWAIDSL 383 (428)
T ss_pred cccccceEEecc------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC---CccceEECCCCC
Confidence 7532 333322 11233456788888888887543 3479999998887766654321 1233444 445
Q ss_pred eEEEEeC--CCCeEEEEeccCCcceE
Q psy14257 550 HVYWTDW--RTNSVIRANKWNGSDVT 573 (841)
Q Consensus 550 ~lY~td~--~~~~i~~~~~~~g~~~~ 573 (841)
+||++.. ....|+.++..+++...
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEE
Confidence 6776543 23567777766555433
No 73
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0033 Score=71.49 Aligned_cols=230 Identities=12% Similarity=0.053 Sum_probs=134.2
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+|+.++.++.+...+...........|.+..+. |+++... ...|+..++.+|. ... +...-.....+++.+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~--la~~s~~~~~~~I~~~dl~~g~---~~~-l~~~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTK--LAYVSFESKKPVVYVHDLATGR---RRV-VANFKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCE--EEEEEccCCCcEEEEEECCCCC---EEE-eecCCCCccceEECC
Confidence 3566777766665555544444566778775444 6665433 3468888887664 222 221111233566776
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERT 384 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~ 384 (841)
.++.+++.-... ....|++.+.++...+.+... -......++.+++++|+++.. ....|+.++++++..+
T Consensus 250 DG~~la~~~~~~-------g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 250 DGRTLAVALSRD-------GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred CCCEEEEEEccC-------CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 665555432211 224788888887766655332 223345678888888887643 3457888888876655
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEe
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td 462 (841)
.+....... ...++...++.|+++.... ..|.+.++++...+.+.... .....++.|++.+|+++.
T Consensus 322 ~lt~~g~~~----------~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 322 RVTFTGSYN----------TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYAT 389 (427)
T ss_pred EEecCCCCc----------CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEE
Confidence 443111000 0012333456777765433 36888898776555544332 235668899888888876
Q ss_pred cCCCCCeEEEecCCCCCcEEEE
Q psy14257 463 WDSKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 463 ~~~~~~~I~r~~ldG~~~~~i~ 484 (841)
.......|+.++++|..+..+.
T Consensus 390 ~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 390 QQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ecCCCEEEEEEECCCCceEEee
Confidence 4433567899999987766554
No 74
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.82 E-value=0.0061 Score=69.34 Aligned_cols=207 Identities=14% Similarity=0.044 Sum_probs=121.6
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEe
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRV 378 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~l 378 (841)
.+++.|.++.+++. ++.. ..+.|+..++++..++.+.... +.....++.+++++|+++-. ....|+.+++
T Consensus 200 ~p~wSPDG~~la~~-s~~~------~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 200 SPAWSPDGTKLAYV-SFES------KKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cceEcCCCCEEEEE-EccC------CCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 45666655444432 2211 2347999998866555543222 23456889999999987633 3456889998
Q ss_pred cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC
Q psy14257 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG 456 (841)
Q Consensus 379 dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g 456 (841)
+++..+.+..... +. ...+....++.|+++.. +...|++.++++...+.+...+ ......++.|++.
T Consensus 272 ~~~~~~~lt~~~~--------~~--~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSGLRRLTQSSG--------ID--TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGK 340 (427)
T ss_pred CCCCcEECCCCCC--------CC--cCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCC
Confidence 8876655422110 00 00112223466776543 2446777777765444333222 2233568899888
Q ss_pred eEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC--CCeEEEEEcCCCeeEEEEc
Q psy14257 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK--SDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 457 ~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~--~~~I~~~~~dG~~~~~i~~ 533 (841)
+|+++........|+..++++...+.+.. . ......++.++++.||++-.. ...++.++++|...+.+..
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-----~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~ 412 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVTALTD-----T--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSV 412 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeEEccC-----C--CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeec
Confidence 88887643223579999988766555433 1 122456788888888886533 3468888898887766643
No 75
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.81 E-value=0.0054 Score=69.78 Aligned_cols=228 Identities=12% Similarity=0.035 Sum_probs=138.1
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
..+|+.++.||.+.+.+... -..-...++.+++++|.++.. ....|+..+++++..+.+........
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~---------- 246 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG---------- 246 (429)
T ss_pred ceeEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC----------
Confidence 44799999999988777543 234457899999988887643 34578999998877666543211100
Q ss_pred CCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...+..|+++... ...|++.++++...+.+... -......++.|+..+|+++.......+|+++++++...+.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~ 325 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR 325 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence 01233345778887443 34688899887655554432 2345677899987777555422235799999998876655
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCC-
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN- 559 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~- 559 (841)
+.. ........++.++++.|+++.... ..|+.+++++...+.+.... ....| .++-++..|+++....+
T Consensus 326 lt~------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p-~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 326 ITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETP-SIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred eec------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCc-eECCCCCEEEEEEcCCCc
Confidence 533 222334577787788887765433 46888898877666554321 11122 23334556766654332
Q ss_pred e-EEEEeccCCcceEEE
Q psy14257 560 S-VIRANKWNGSDVTLI 575 (841)
Q Consensus 560 ~-i~~~~~~~g~~~~~i 575 (841)
. +..++. +|.....+
T Consensus 398 ~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 398 SVLNLVST-DGRFKARL 413 (429)
T ss_pred eEEEEEEC-CCCCeEEC
Confidence 2 334443 45544433
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.011 Score=67.13 Aligned_cols=230 Identities=8% Similarity=0.020 Sum_probs=134.5
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCce
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~g 353 (841)
+|+.++.+|+. .+.+.. +-.....+++.|.++.+.++ + +. .....|+..++++...+.+.... .....
T Consensus 180 ~l~~~d~dg~~---~~~lt~-~~~~~~~p~wSPDG~~la~~-s-~~-----~g~~~i~i~dl~~G~~~~l~~~~-~~~~~ 247 (429)
T PRK03629 180 ELRVSDYDGYN---QFVVHR-SPQPLMSPAWSPDGSKLAYV-T-FE-----SGRSALVIQTLANGAVRQVASFP-RHNGA 247 (429)
T ss_pred eEEEEcCCCCC---CEEeec-CCCceeeeEEcCCCCEEEEE-E-ec-----CCCcEEEEEECCCCCeEEccCCC-CCcCC
Confidence 57777776542 233322 22234456777766544332 2 11 12347888888776555554221 12345
Q ss_pred EEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEec--CCCcEEEEc
Q psy14257 354 LVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVES--NLDQIEVAK 429 (841)
Q Consensus 354 lavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~--~~~~I~v~~ 429 (841)
+++.+++++|+++... ...|+.++++++..+.+..... ... ..+....++.|+++-. +...|++.+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-----~~~-----~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-----NNT-----EPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-----CcC-----ceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 7899999999997543 3469999998876665532210 000 0012223455655432 234788888
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
+++...+.+... .......++.|++.+|+++........|+..++++...+.+.. .. .-...++.+++..|+
T Consensus 318 ~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-----~~--~~~~p~~SpDG~~i~ 389 (429)
T PRK03629 318 INGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-----TF--LDETPSIAPNGTMVI 389 (429)
T ss_pred CCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-----CC--CCCCceECCCCCEEE
Confidence 887655544332 2334567889988888877643234678999988766555432 11 112345777788888
Q ss_pred EEeCCC--CeEEEEEcCCCeeEEEEc
Q psy14257 510 WIDAKS--DSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 510 w~d~~~--~~I~~~~~dG~~~~~i~~ 533 (841)
++.... ..++.++++|...+.+..
T Consensus 390 ~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 390 YSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred EEEcCCCceEEEEEECCCCCeEECcc
Confidence 876543 358888999988777654
No 77
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.79 E-value=0.00013 Score=62.16 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=58.1
Q ss_pred ceeEEeecCCcEEEEecCC---------------CCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEE
Q psy14257 741 SGLAIDWIAQNMFIAVSSP---------------TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFW 805 (841)
Q Consensus 741 ~glAvD~~~~~LYw~~~~~---------------~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw 805 (841)
.+|+|+..++.+|+|++.. .++++-+.++.....++++++ |.-|.|||+.+...+|++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-------L~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-------LYFPNGVALSPDESFVLV 73 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-------ESSEEEEEE-TTSSEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-------CCccCeEEEcCCCCEEEE
Confidence 4789998889999997532 234677888888888899998 999999999999999999
Q ss_pred EecCCCcceEEEEecCCC
Q psy14257 806 SNVTKQVVTIEMAFMDGT 823 (841)
Q Consensus 806 ~d~~~~~~~I~~~~~dG~ 823 (841)
++.+.. ||.|.++.|.
T Consensus 74 ~Et~~~--Ri~rywl~Gp 89 (89)
T PF03088_consen 74 AETGRY--RILRYWLKGP 89 (89)
T ss_dssp EEGGGT--EEEEEESSST
T ss_pred EeccCc--eEEEEEEeCC
Confidence 999884 9999999984
No 78
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.78 E-value=0.0049 Score=70.63 Aligned_cols=208 Identities=14% Similarity=0.067 Sum_probs=126.9
Q ss_pred ccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCC--Ccc-ccCCCC--------CCccccccceEEEEecCCCcEE
Q psy14257 358 YNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD--SRV-GIPNCR--------PEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 358 ~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~--~~~-~i~~~~--------~~avdw~~~~LY~tD~~~~~I~ 426 (841)
|+++.||+-|..+.+|-|++++--....+..+...... ... -.|+.. .+-+...++.|+.++...+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 56899999999999999999987665555443211110 000 001000 0112223346777766677788
Q ss_pred EEccCCceE-EEEecCCCCCceeEEEcCCCCeEEEEecCCC------------CCeEEEecC--------CCC------C
Q psy14257 427 VAKLSGQFR-RTLIAGDMESPRAIALDPRFGLLFWTDWDSK------------APRIERCSM--------SGE------H 479 (841)
Q Consensus 427 v~~~~G~~~-~~l~~~~l~~P~giavd~~~g~Ly~td~~~~------------~~~I~r~~l--------dG~------~ 479 (841)
+++.+.... ..+..+ .+|+.+++++.++++|+|..+.+ ...+..++. ||. +
T Consensus 219 vID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn 296 (635)
T PRK02888 219 AVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS 296 (635)
T ss_pred EEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence 887764322 223323 38999999999999999964321 111112211 221 1
Q ss_pred cEEEEEecc----c------CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCe---------eEEEEcCCCCCCc
Q psy14257 480 RSVIVRVDL----L------TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKD---------HHVVLSNHDSLTH 540 (841)
Q Consensus 480 ~~~i~~~~~----~------~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~---------~~~i~~~~~~l~~ 540 (841)
+..+++... . ...-+.|.|++++++++++|++....+.+..+++.... +.+++...+.-..
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 112222110 0 02346799999999999999999999999999987632 2334433333346
Q ss_pred ceEEEEec-CeEEEEeCCCCeEEEEecc
Q psy14257 541 PFAIALFE-NHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 541 P~gla~~~-~~lY~td~~~~~i~~~~~~ 567 (841)
|...++.+ |+.|.|-.-...|.++|..
T Consensus 377 PLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 377 PLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred cceEEECCCCCEEEeEeecceeEEEehH
Confidence 88888865 6899998888888888743
No 79
>KOG4260|consensus
Probab=97.75 E-value=4.5e-05 Score=75.82 Aligned_cols=100 Identities=22% Similarity=0.464 Sum_probs=66.5
Q ss_pred ccCCCCCeEecC-CCCCCCCCCCCCCCCCcccccccccC------------CCCCCCcc---cCCCCcEE-ecCCCceec
Q psy14257 101 DCQDVLRTCIPK-ALVCDGEPACFNGEDEMFCDEKQCLR------------SDCHHDCY---NTPEGFMC-VCPRDMYLQ 163 (841)
Q Consensus 101 ~C~~~~~~Ci~~-~~~Cdg~~~C~~g~de~~C~eC~~~~------------~~C~~~C~---~~~g~~~C-~C~~Gy~l~ 163 (841)
.|... +.|--. +..=+|..+|..||.+..|++|.... ..|+..|. ..+++-.| .|..|+.|.
T Consensus 151 ~C~Gn-G~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~C~kCkkGW~ld 229 (350)
T KOG4260|consen 151 PCFGN-GSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKGCSKCKKGWKLD 229 (350)
T ss_pred CcCCC-CcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCChhhhcccceec
Confidence 34433 555433 33344555999999888886663211 12232333 12344455 599999984
Q ss_pred CCCCccccccccC-CCCCc--cCceeecCCCCceEEeecCCeeec
Q psy14257 164 PDLITCSYLHPCE-AWGTC--SQDCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 164 ~d~~~C~~~~eC~-~~~~C--s~~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
...|.|++||+ .+.+| .|+|.|+ .|+|.|.+.+||...
T Consensus 230 --e~gCvDvnEC~~ep~~c~~~qfCvNt--eGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 230 --EEGCVDVNECQNEPAPCKAHQFCVNT--EGSFKCEDKEGYKKG 270 (350)
T ss_pred --ccccccHHHHhcCCCCCChhheeecC--CCceEecccccccCC
Confidence 66799999998 45567 5699999 999999999999864
No 80
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.0054 Score=69.95 Aligned_cols=227 Identities=12% Similarity=0.083 Sum_probs=132.6
Q ss_pred ccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEeeec
Q psy14257 231 LRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIG 308 (841)
Q Consensus 231 I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~ 308 (841)
|+.++.++.+...+...........|....+. |+++... ...|++.++++|. .+.+.. .-.....+++.+.+
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~--la~~s~~~~~~~l~~~~l~~g~---~~~l~~-~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKR--IAYVSFEQKRPRIFVQNLDTGR---REQITN-FEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCE--EEEEEcCCCCCEEEEEECCCCC---EEEccC-CCCCcCCeEECCCC
Confidence 55566666665555554444566778776444 7665433 3478888887664 222211 11122245666655
Q ss_pred CceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEE
Q psy14257 309 KNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVS 386 (841)
Q Consensus 309 ~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~ 386 (841)
+.+++.-.. .....|++.++++...+.+... -......++.+++++||++... ...|+.++++++..+.+
T Consensus 255 ~~la~~~~~-------~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 255 SKLAFVLSK-------DGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CEEEEEEcc-------CCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 555442211 1124799999887766655432 2234456788888888776543 45799999887765554
Q ss_pred EeeeeecCCCccccCCCCCCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 387 FNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 387 ~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
...... . ...++...++.|+++.... ..|.+.++++...+.+.... ......+.|++..|+++...
T Consensus 327 t~~~~~--~--------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 327 TFVGNY--N--------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred ecCCCC--c--------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEec
Confidence 321100 0 0012333457888876433 35888888876655544322 22244788988899888754
Q ss_pred CCCCeEEEecCCCCCcEEE
Q psy14257 465 SKAPRIERCSMSGEHRSVI 483 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~~~~i 483 (841)
.....|+..+++|...+.+
T Consensus 395 ~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 395 QGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCceEEEEEECCCCceEEC
Confidence 3456799999998766544
No 81
>KOG1219|consensus
Probab=97.73 E-value=5e-05 Score=93.68 Aligned_cols=59 Identities=34% Similarity=0.697 Sum_probs=50.4
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc-----ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccc
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC-----DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCS 170 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C-----~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~ 170 (841)
+|..+ +.|++. .+.| .|+.||.+.+| +||+-. .|. ..|.|.+|+|.|.|-+||. +++|.
T Consensus 3910 PC~~G-gtCip~~n~f~C----nC~~gyTG~~Ce~~Gi~eCs~n--~C~~gg~C~n~~gsf~CncT~g~~----gr~c~ 3977 (4289)
T KOG1219|consen 3910 PCLTG-GTCIPFYNGFLC----NCPNGYTGKRCEARGISECSKN--VCGTGGQCINIPGSFHCNCTPGIL----GRTCC 3977 (4289)
T ss_pred CCCCC-CEEEecCCCeeE----eCCCCccCceeecccccccccc--cccCCceeeccCCceEeccChhHh----cccCc
Confidence 69998 999997 7899 99999999999 578743 674 4899999999999999997 56663
No 82
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.011 Score=64.87 Aligned_cols=137 Identities=18% Similarity=0.206 Sum_probs=83.6
Q ss_pred cCCCCCceEEEEecCCCEEEEEECCCCeE------EEEEcccCceeeeeeeeeeeecccccc-------cccccCceEEE
Q psy14257 665 IPQVFSPNNLNFDAANKKIYWTDQEYNEV------KRSSIVGGQIQLVVDAVFEFYLTPLSK-------RSSIVGGQIQL 731 (841)
Q Consensus 665 ~~~~~~~~~v~~d~~~~~iyw~d~~~~~I------~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 731 (841)
.-.+.|+.+++++|.++.||.++.+...+ .++ ..| ++|-=|.+. +....+.....
T Consensus 235 s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G-----------~nYGWP~~~~G~~~~g~~~~~~~~~~~ 302 (399)
T COG2133 235 SYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPG-----------KNYGWPYAYFGQNYDGRAIPDGTVVAG 302 (399)
T ss_pred EeccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccC-----------CccCCceeccCcccCccccCCCccccc
Confidence 34678999999999999999999766433 222 122 234333322 11111111111
Q ss_pred Eee-----CCCCCcceeEEeecC------CcEEEEecCCCCCeEEEEecCCcceEEE---EcCCCCCCCcCCCceEEEEe
Q psy14257 732 VVD-----AGISHPSGLAIDWIA------QNMFIAVSSPTQSKIVVCNLEGEYQTTI---LSNESNDTSTLSKISSIAVW 797 (841)
Q Consensus 732 i~~-----~~~~~p~glAvD~~~------~~LYw~~~~~~~~~I~v~~l~g~~~~~~---~~~~~~~~~~l~~p~~iavd 797 (841)
.+. ..--.|.||||---. +.||++. .....+.+.+++|..+.++ +.. +. ..+|+++++.
T Consensus 303 ~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~--hgsw~~~~~~~~g~~~~~~~~fl~~---d~--~gR~~dV~v~ 375 (399)
T COG2133 303 AIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGA--HGSWPVLRLRPDGNYKVVLTGFLSG---DL--GGRPRDVAVA 375 (399)
T ss_pred ccCCceeeccccccceeEEecCCcCccccCcEEEEe--ecceeEEEeccCCCcceEEEEEEec---CC--CCcccceEEC
Confidence 111 111347899997321 5899994 4555677788999854333 331 00 2699999999
Q ss_pred CCCCeEEEEecCCCcceEEEEecCC
Q psy14257 798 PVKGKMFWSNVTKQVVTIEMAFMDG 822 (841)
Q Consensus 798 ~~~g~lyw~d~~~~~~~I~~~~~dG 822 (841)
|. |.||.++...+ ++|.|...++
T Consensus 376 ~D-Gallv~~D~~~-g~i~Rv~~~~ 398 (399)
T COG2133 376 PD-GALLVLTDQGD-GRILRVSYAG 398 (399)
T ss_pred CC-CeEEEeecCCC-CeEEEecCCC
Confidence 97 77888777654 5899998776
No 83
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.70 E-value=0.12 Score=56.12 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=75.0
Q ss_pred CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 666 ~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
.++.++.++..++..+++-+++ ....|..++++..+ .+.|-.+..+-..++++
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaN-dr~el~vididngn--------------------------v~~idkS~~~lItdf~~ 451 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNGN--------------------------VRLIDKSEYGLITDFDW 451 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCCC--------------------------eeEecccccceeEEEEE
Confidence 4678899999999989898887 57899999998877 33333334444566666
Q ss_pred eecCCcEEEEe-cCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 746 DWIAQNMFIAV-SSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 746 D~~~~~LYw~~-~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
.+.+|.+=.+= ...-.+.|.+.+++|...-.+... -..-.+=|.||.+.+||+.....
T Consensus 452 ~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-------ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 452 HPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-------TAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-------cccccCcccCCCCcEEEEEeccc
Confidence 66666554330 011236799999998644333332 23444558999999999987643
No 84
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.67 E-value=2.3e-05 Score=57.03 Aligned_cols=38 Identities=34% Similarity=0.624 Sum_probs=31.3
Q ss_pred ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 132 DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 132 ~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|||......|. +.|.|+.|+|.|.|++||.+..++.+|
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 57776667786 599999999999999999976666655
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.67 E-value=0.019 Score=65.13 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=60.8
Q ss_pred cEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 424 QIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 424 ~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
.|++.++++...+.+.. .......++++|...+|+++.......+|+.+++++...+.+.. . ......++.+
T Consensus 303 ~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-----~--~~~~~p~~sp 374 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-----T--GLDESPSFAP 374 (417)
T ss_pred eEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----C--CCCCCceECC
Confidence 45555555443333322 22344567889988899998765334589999998755544432 1 1123446777
Q ss_pred cCCEEEEEeCCC--CeEEEEEcCCCeeEEE
Q psy14257 504 QLTRIYWIDAKS--DSIHTVTYDGKDHHVV 531 (841)
Q Consensus 504 ~~~~LYw~d~~~--~~I~~~~~dG~~~~~i 531 (841)
.++.|+++.... ..++.++.+|...+.+
T Consensus 375 dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 375 NGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 788888876544 3577777788765544
No 86
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.034 Score=63.14 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=130.8
Q ss_pred eEEEEEecCCcccceEEEEeCCCCCccceEEeeecCce-eEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCc
Q psy14257 274 KIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNL-YMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPS 352 (841)
Q Consensus 274 ~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~-y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~ 352 (841)
.|+.++.+|+. ...+.. +-..-...+..|.++.+ |+|.+.-. ..+.|+..+++|...+.+... -+...
T Consensus 166 ~l~~~d~dG~~---~~~lt~-~~~~~~sP~wSPDG~~~~~~y~S~~~------g~~~I~~~~l~~g~~~~lt~~-~g~~~ 234 (428)
T PRK01029 166 ELWSVDYDGQN---LRPLTQ-EHSLSITPTWMHIGSGFPYLYVSYKL------GVPKIFLGSLENPAGKKILAL-QGNQL 234 (428)
T ss_pred eEEEEcCCCCC---ceEccc-CCCCcccceEccCCCceEEEEEEccC------CCceEEEEECCCCCceEeecC-CCCcc
Confidence 67777777653 222221 11111234566666554 34444422 235899999998877766542 12234
Q ss_pred eEEEEccCCEEEEEeCC--CCeEEEE--EecC---CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecC--CC
Q psy14257 353 SLVIDYNQDILYWCDSH--LNTVESV--RVDG---SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESN--LD 423 (841)
Q Consensus 353 glavD~~~~~lYwaD~~--~~~I~~~--~ldG---~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~--~~ 423 (841)
..++.+++++|.++-.. ...|+.. ++++ +..+.+.... . ++. ...++...+..|+++... ..
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~------~~~--~~p~wSPDG~~Laf~s~~~g~~ 305 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-F------GTQ--GNPSFSPDGTRLVFVSNKDGRP 305 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-C------CCc--CCeEECCCCCEEEEEECCCCCc
Confidence 57888999888887542 3345553 4432 2223332110 0 000 001223344667766432 34
Q ss_pred cEEEEccCC--ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEE
Q psy14257 424 QIEVAKLSG--QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTL 501 (841)
Q Consensus 424 ~I~v~~~~G--~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glal 501 (841)
.|+++++++ ...+.+ ..........+..|++.+|+++.......+|+..++++...+.+.. . .......++
T Consensus 306 ~ly~~~~~~~g~~~~~l-t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-----~-~~~~~~p~w 378 (428)
T PRK01029 306 RIYIMQIDPEGQSPRLL-TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-----S-PENKESPSW 378 (428)
T ss_pred eEEEEECcccccceEEe-ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-----C-CCCccceEE
Confidence 688877753 223322 2222334567889998888887643235689999998877666643 1 123455777
Q ss_pred eccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcC
Q psy14257 502 DYQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 502 D~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~ 534 (841)
.++++.||++.. +...|+.+++++...+.+...
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 777788887643 345788999988776666543
No 87
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0092 Score=61.43 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
...+|+.++..+.||.. ++ ....|......|...+++....+..|.+|++= .++..-++|....+++.+.
T Consensus 87 nvS~LTynp~~rtLFav-~n--------~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAV-TN--------KPAAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEe-cC--------CCceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEE
Confidence 46778999887666642 21 23489999999999999999999999999985 3455556788889999888
Q ss_pred ecCCccEEEEee-----eeecCCCccccCCCCCCccccccceEEEEecCC-CcEEEEccCCceEEEEecC----C----C
Q psy14257 378 VDGSERTVSFNL-----EVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-DQIEVAKLSGQFRRTLIAG----D----M 443 (841)
Q Consensus 378 ldG~~~~~~~~~-----~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-~~I~v~~~~G~~~~~l~~~----~----l 443 (841)
++-......... +..... ..| -..+|.|...+.||++-..+ -.|+..+..-+....-+.. . +
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~-N~G---fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKK-NKG---FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred EcCCccEEeccceEEeccccCCC-CcC---ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 876543332221 111110 111 12346677778898886442 2444444322111111110 0 3
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEec-c--cCCCCCCceeEEEeccCCEEEEEeCCCCeEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVD-L--LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~-~--~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~ 520 (841)
..-.|+.+|+.++.|++-... ...+..++++|..+..+.-.. . ....+..|.|+|+| ..+.||++-. -+..++
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSE-Pnlfy~ 308 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSE-PNLFYR 308 (316)
T ss_pred eccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEec-CCccee
Confidence 446789999999999887754 688999999998655443211 0 12467889999999 6789998754 344555
Q ss_pred EEc
Q psy14257 521 VTY 523 (841)
Q Consensus 521 ~~~ 523 (841)
+..
T Consensus 309 F~~ 311 (316)
T COG3204 309 FTP 311 (316)
T ss_pred ccc
Confidence 543
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.63 E-value=0.11 Score=53.78 Aligned_cols=212 Identities=11% Similarity=0.044 Sum_probs=113.7
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
++.|..++.............-.....+.+.+. +.++++....+.|...++........+.. .... ..
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~-------i~ 139 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRG----HTDW-------VN 139 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEecc----CCCc-------EE
Confidence 567888887653222222222335667888766 45666666678888888873322222110 0000 01
Q ss_pred cccccc-ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 407 DNLWIG-KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 407 avdw~~-~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
.+.|.. +.++++....+.|.+.++........+.........+++++....|+.+.. .+.|...++..........
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchh
Confidence 122222 344444444678888888643322223233346789999988667766653 4677777775422222221
Q ss_pred ecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeE
Q psy14257 486 VDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSV 561 (841)
Q Consensus 486 ~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i 561 (841)
..-..+..+++++. +.++++....+.|..+++........+... -.....+++.. +.++++-...+.|
T Consensus 217 -----~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 217 -----GHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred -----hcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeE
Confidence 12235678888865 666666656788999988743332222221 22356677654 3444444344443
No 89
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.62 E-value=0.016 Score=60.10 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=129.1
Q ss_pred EEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-----CCcccccccc-------CcCCCceEEEEc
Q psy14257 291 VVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-----GENRSPLVTK-------NIQWPSSLVIDY 358 (841)
Q Consensus 291 ~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-----G~~~~~l~~~-------~~~~P~glavD~ 358 (841)
.+...|..|.|||+.|.+ .++++|. .++....++.+ |.....++.- .-..|.|+++..
T Consensus 17 ~tDp~L~N~WGia~~p~~---~~WVadn-------gT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~ 86 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRPGG---PFWVANT-------GTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG 86 (336)
T ss_pred ccCccccccceeEecCCC---CEEEecC-------CcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC
Confidence 345678899999998744 2223332 33455555555 3332212211 235799999985
Q ss_pred cCCE-----------EEEEeCCCCeEEEEEecCCcc----E-EEEeeee-ecCCCccccCCCCCCccccccceEEEEecC
Q psy14257 359 NQDI-----------LYWCDSHLNTVESVRVDGSER----T-VSFNLEV-LGSDSRVGIPNCRPEDNLWIGKNLYWVESN 421 (841)
Q Consensus 359 ~~~~-----------lYwaD~~~~~I~~~~ldG~~~----~-~~~~~~~-~~~~~~~~i~~~~~~avdw~~~~LY~tD~~ 421 (841)
.... .|+...+.++|......-... . ++++-.. -.--..+++.. ---+..||-+|-.
T Consensus 87 ~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~------~~~~~~LYaadF~ 160 (336)
T TIGR03118 87 SDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGP------TGGGDYLYAANFR 160 (336)
T ss_pred CCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEee------cCCCceEEEeccC
Confidence 5332 233444455565544322111 1 1111000 00000111110 0114889999999
Q ss_pred CCcEEEEccCCceEEEEecCCC--------CCceeEEEcCCCCeEEEEecC-----------CCCCeEEEecCCCCCcEE
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDM--------ESPRAIALDPRFGLLFWTDWD-----------SKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l--------~~P~giavd~~~g~Ly~td~~-----------~~~~~I~r~~ldG~~~~~ 482 (841)
+++|.|++ +++.++.+...+ .-|.+|.- ..+.||+|=.. ...+.|-.++++|...+.
T Consensus 161 ~g~IDVFd--~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r 236 (336)
T TIGR03118 161 QGRIDVFK--GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRR 236 (336)
T ss_pred CCceEEec--CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEE
Confidence 99999985 444433332222 34677766 36899999321 124579999999998887
Q ss_pred EEEecccCCCCCCceeEEEecc-----CCEEEEEeCCCCeEEEEEcC-CCeeEEEEc
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQ-----LTRIYWIDAKSDSIHTVTYD-GKDHHVVLS 533 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~-----~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~ 533 (841)
+.+. ..|..|-||++-+. .+.|.+-+.+.++|..+|+. |..+-.+..
T Consensus 237 ~as~----g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 237 VASS----GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred eccC----CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 7663 67899999999653 58999999999999999986 666655543
No 90
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.61 E-value=0.011 Score=61.74 Aligned_cols=215 Identities=11% Similarity=0.053 Sum_probs=123.6
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE----e------cCCccEEEEeeeeecCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR----V------DGSERTVSFNLEVLGSDS 396 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~----l------dG~~~~~~~~~~~~~~~~ 396 (841)
.||+.....+-..+..+....+.+|.||++. .++||++-. ..|+++. + .+..-+.... .....-.
T Consensus 27 agkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvP-r~~~~TG 101 (335)
T TIGR03032 27 AGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVP-RASYVTG 101 (335)
T ss_pred cceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEee-eeeeecc
Confidence 3455555443222355556688999999996 578998864 2455541 0 1110000000 0000000
Q ss_pred ccccCCCCCCccccccceEEEEecCCCcEEEEccCCceE--------EEEecCCCCCceeEEEcCCCCeEEEEecCC-CC
Q psy14257 397 RVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR--------RTLIAGDMESPRAIALDPRFGLLFWTDWDS-KA 467 (841)
Q Consensus 397 ~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~--------~~l~~~~l~~P~giavd~~~g~Ly~td~~~-~~ 467 (841)
.+. .-+++|.++.++++.+...-+...+..-++. ..+..++--+-+|||+. ++.--|+|..+. ..
T Consensus 102 did-----iHdia~~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~ 175 (335)
T TIGR03032 102 DID-----AHDLALGAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDV 175 (335)
T ss_pred Ccc-----hhheeecCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCC
Confidence 011 1245666788888887766666555554432 23333444577899997 345667776442 12
Q ss_pred CeEEEecC-CCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 468 PRIERCSM-SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 468 ~~I~r~~l-dG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
+.=+|-.. +|.-...+...+....++..|.+.-+- +++||+.|.+.+.|.+++++....+.+..-. ..|.||++
T Consensus 176 ~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f 250 (335)
T TIGR03032 176 ADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAF 250 (335)
T ss_pred cccccccccCCeEEEEeCCCCEEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCcccce
Confidence 34444443 222221111111111578888888774 7999999999999999999844444555443 47899999
Q ss_pred ecCeEEEEeCC
Q psy14257 547 FENHVYWTDWR 557 (841)
Q Consensus 547 ~~~~lY~td~~ 557 (841)
.++++|++-..
T Consensus 251 ~G~llvVgmSk 261 (335)
T TIGR03032 251 AGDFAFVGLSK 261 (335)
T ss_pred eCCEEEEEecc
Confidence 98899887554
No 91
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=97.60 E-value=4.5e-05 Score=52.18 Aligned_cols=32 Identities=50% Similarity=1.174 Sum_probs=28.7
Q ss_pred CCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCC
Q psy14257 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDE 128 (841)
Q Consensus 95 C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de 128 (841)
|...+|.|.+ +.||+..++|||..+|.+|+||
T Consensus 2 C~~~~f~C~~--~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDN--GRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCC--CCEECchhhCCCcCcCcCCCCC
Confidence 5566899987 7899999999999999999987
No 92
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=97.54 E-value=6.4e-05 Score=71.81 Aligned_cols=70 Identities=36% Similarity=0.645 Sum_probs=55.8
Q ss_pred CCCCcccCCCCeE-ecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCC---e
Q psy14257 33 DESHFTCNETLRC-IPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLR---T 108 (841)
Q Consensus 33 ~~~~~~C~~~~~C-i~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~---~ 108 (841)
..+.|+|.+...= |+.+.+.|+.-||. |||||-+ ...|..+.|.|.|. + .
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~--DGSDEPG-----------------------TsAC~~~~FyC~N~-g~~p~ 87 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCP--DGSDEPG-----------------------TSACSNGKFYCENK-GHIPR 87 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCC--CCCCccc-----------------------cccCcCceEeeccC-CCCCc
Confidence 4567999856555 99999999999999 8888833 13466678899885 4 5
Q ss_pred EecCCCCCCCCCC---CCCCCCC
Q psy14257 109 CIPKALVCDGEPA---CFNGEDE 128 (841)
Q Consensus 109 Ci~~~~~Cdg~~~---C~~g~de 128 (841)
-|+.+++=||..| |=||+||
T Consensus 88 ~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 88 YIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred eeehhhhcCCcCcccccCCCCCC
Confidence 6788888888889 9999999
No 93
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.42 E-value=0.00021 Score=51.95 Aligned_cols=39 Identities=36% Similarity=0.828 Sum_probs=31.7
Q ss_pred cccccCC-CCCcc--CceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 171 YLHPCEA-WGTCS--QDCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 171 ~~~eC~~-~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
|++||.. ...|. +.|+|+ .|+|+|.|++||.+..++..|
T Consensus 1 DidEC~~~~~~C~~~~~C~N~--~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNT--EGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEE--TTEEEEEESTTEEECTTSSEE
T ss_pred CccccCCCCCcCCCCCEEEcC--CCCEEeeCCCCcEECCCCCcC
Confidence 5789974 46785 699999 999999999999977666554
No 94
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.37 E-value=0.054 Score=57.85 Aligned_cols=256 Identities=15% Similarity=0.188 Sum_probs=134.6
Q ss_pred ceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccc--cccc-----CcCCCceEEEEccCCEEEEEeC-CCCe
Q psy14257 301 GLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSP--LVTK-----NIQWPSSLVIDYNQDILYWCDS-HLNT 372 (841)
Q Consensus 301 giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~--l~~~-----~~~~P~glavD~~~~~lYwaD~-~~~~ 372 (841)
++++.+.++.+|+.-|.|....-...+--|+.++...-...- .+.. .+..++-+++..+++++|+.+. -...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366777788888755554311000001135555554332221 1111 2356778899999999999987 5678
Q ss_pred EEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC--CceEEEE--ecCCCCCce-
Q psy14257 373 VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS--GQFRRTL--IAGDMESPR- 447 (841)
Q Consensus 373 I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~--G~~~~~l--~~~~l~~P~- 447 (841)
|..+++.......-+.+ |.|-- .+=+-++. |.+--+.|++..+.++ |+..+.. +-.....|.
T Consensus 120 VtVVDl~~~kvv~ei~~-----------PGC~~-iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT-----------PGCWL-IYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp EEEEETTTTEEEEEEEG-----------TSEEE-EEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred EEEEECCCCceeeeecC-----------CCEEE-EEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 99999887654332221 11100 00001133 2233345677766665 5543221 111112221
Q ss_pred -eEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC----CCCCCcee---EEEeccCCEEEEEeC------
Q psy14257 448 -AIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT----SRGAWPNG---LTLDYQLTRIYWIDA------ 513 (841)
Q Consensus 448 -giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~----~~~~~P~g---lalD~~~~~LYw~d~------ 513 (841)
.=+.....+.+||... ++.|+.+++.|...+......+.. ..--.|.| +|++...++||+.-.
T Consensus 187 ~~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp S--EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred cccceECCCCeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 1122334578888776 489999999998766554432110 01223444 889989999998631
Q ss_pred ---CCCeEEEEEcCCCeeEEEEcCCCCCCcce-EEEEec---CeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 514 ---KSDSIHTVTYDGKDHHVVLSNHDSLTHPF-AIALFE---NHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 514 ---~~~~I~~~~~dG~~~~~i~~~~~~l~~P~-gla~~~---~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
....|+.+|+....|-.-+. +.+|. +|++.. -.||-++..++.+...+..+|+.+..+.
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 12278888887654433222 33443 677743 2677777777778888877777666554
No 95
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.051 Score=61.90 Aligned_cols=205 Identities=16% Similarity=0.092 Sum_probs=122.8
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC--CCeEEEEEecCCccEEEEeeeeecCCCccccCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH--LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCR 404 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~--~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~ 404 (841)
...|+.++.||...+.+... -..-..+++.+++++|+++... ...|+..++.++..+.+........
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~---------- 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG---------- 251 (429)
T ss_pred eEEEEEECCCCCCceEeccC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC----------
Confidence 35899999999887665432 2344678899999999887543 4579999998776655533211100
Q ss_pred CCccccccceEEEEecCC--CcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEE
Q psy14257 405 PEDNLWIGKNLYWVESNL--DQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSV 482 (841)
Q Consensus 405 ~~avdw~~~~LY~tD~~~--~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~ 482 (841)
..++...++.|+++-... -.|++.++++...+.+.. ........++.|+..+|+++.......+|++.+.++...+.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 012223346787764333 357778887765555433 22345678899987777776433236799999988776554
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
+ . ... ...++.++++.|+.+.. ..|..+++.+...+.+.... ....| .++-.+..|+++..
T Consensus 331 l-~-----~~~---~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~-~~sPdG~~i~~~s~ 391 (429)
T PRK01742 331 V-G-----GRG---YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESP-SISPNGIMIIYSST 391 (429)
T ss_pred e-c-----CCC---CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCc-eECCCCCEEEEEEc
Confidence 4 2 111 23556777788877654 56777888765544433221 11111 22334556777654
No 96
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.19 E-value=0.52 Score=51.50 Aligned_cols=355 Identities=13% Similarity=0.119 Sum_probs=184.5
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC-----cEEEEccCCce
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD-----QIEVAKLSGQF 434 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~-----~I~v~~~~G~~ 434 (841)
+..||+.+.+.+.+.|+..-|+.-+.+.. +.++ +.-|..||..+- .+++...||..
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG---~~~d----------------g~iiV~TD~~tPF~q~~~lYkv~~dg~~ 166 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAG---WIPD----------------GEIIVSTDFHTPFSQWTELYKVNVDGIK 166 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeec---cCCC----------------CCEEEEeccCCCcccceeeeEEccCCce
Confidence 45799999999999999888754433322 1111 133444554433 34456666654
Q ss_pred EEEEecCCCCCceeEEEcCCCCeEEEE----------ec-CCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEec
Q psy14257 435 RRTLIAGDMESPRAIALDPRFGLLFWT----------DW-DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503 (841)
Q Consensus 435 ~~~l~~~~l~~P~giavd~~~g~Ly~t----------d~-~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~ 503 (841)
...+ +|.....|.+ .+|.+++. .. +...++|+...-.|...+.+++.. ..+.+|.=
T Consensus 167 ~e~L---nlGpathiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~---~~vS~PmI----- 233 (668)
T COG4946 167 TEPL---NLGPATHIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLD---GNVSSPMI----- 233 (668)
T ss_pred eeec---cCCceeeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecC---CCcCCceE-----
Confidence 3322 2222233333 23444443 22 113567887777776777777632 46666642
Q ss_pred cCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe--------cCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 504 QLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF--------ENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 504 ~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~--------~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..+|+|+... +-+.|++++++|.+.+.--.-. --.|.-+.-+ +|.||.=|..+.++.+.+..
T Consensus 234 V~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~------ 305 (668)
T COG4946 234 VGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIG------ 305 (668)
T ss_pred EcceEEEEecccCccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecC------
Confidence 2688998643 4579999999998765432211 1123322222 35555555555555444321
Q ss_pred EEecccCCCceec-cCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEec
Q psy14257 574 LIQRTLTQPFIYV-NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDL 652 (841)
Q Consensus 574 ~i~~~~~~p~~~h-~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l 652 (841)
-|..-. .||.-.+|....+ .+.+ .+...+.+..+.+.+.+..
T Consensus 306 -------lpl~rk~k~~k~~~pskyle---------------------dfa~---------~~Gd~ia~VSRGkaFi~~~ 348 (668)
T COG4946 306 -------LPLDRKKKQPKFVNPSKYLE---------------------DFAV---------VNGDYIALVSRGKAFIMRP 348 (668)
T ss_pred -------CccccccccccccCHHHhhh---------------------hhcc---------CCCcEEEEEecCcEEEECC
Confidence 011100 2333334433211 0000 1111232333333333322
Q ss_pred CCCCccccceeecCCCC--CceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEE
Q psy14257 653 EHPYYHTIPTISIPQVF--SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQ 730 (841)
Q Consensus 653 ~~~~~~~~~~~~~~~~~--~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (841)
... ..+++..-. .-..+..|+. .+-..+.....+-..+.+|+. .+
T Consensus 349 ~~~-----~~iqv~~~~~VrY~r~~~~~e--~~vigt~dgD~l~iyd~~~~e--------------------------~k 395 (668)
T COG4946 349 WDG-----YSIQVGKKGGVRYRRIQVDPE--GDVIGTNDGDKLGIYDKDGGE--------------------------VK 395 (668)
T ss_pred CCC-----eeEEcCCCCceEEEEEccCCc--ceEEeccCCceEEEEecCCce--------------------------EE
Confidence 111 111111111 1112222222 222333223355555555544 33
Q ss_pred EEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 731 LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 731 ~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
. +..+++....|+++..++.+-.++ .+-.|-++.++....+.+-.. .-....+++++|...++=.+-...
T Consensus 396 r-~e~~lg~I~av~vs~dGK~~vvaN---dr~el~vididngnv~~idkS------~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 396 R-IEKDLGNIEAVKVSPDGKKVVVAN---DRFELWVIDIDNGNVRLIDKS------EYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred E-eeCCccceEEEEEcCCCcEEEEEc---CceEEEEEEecCCCeeEeccc------ccceeEEEEEcCCceeEEEecCcc
Confidence 3 445899999999999999899984 366788889887776655542 156888999999877765554421
Q ss_pred C-cceEEEEecCCCceEEEecCCCC
Q psy14257 811 Q-VVTIEMAFMDGTKRETVVSQKKY 834 (841)
Q Consensus 811 ~-~~~I~~~~~dG~~~~~l~~~~~~ 834 (841)
= .-.|.-+.|+|...--+.+..++
T Consensus 466 y~tq~Iklydm~~~Kiy~vTT~ta~ 490 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVTTPTAY 490 (668)
T ss_pred eeeeeEEEEecCCCeEEEecCCccc
Confidence 0 02478888888766665555443
No 97
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.14 E-value=0.19 Score=52.03 Aligned_cols=209 Identities=17% Similarity=0.183 Sum_probs=114.0
Q ss_pred CCceeEEEeccCCEEEEEeCCCC--eEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcc
Q psy14257 494 AWPNGLTLDYQLTRIYWIDAKSD--SIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
..-.||.++ .++.||-+....+ +|++++++.........-.. -...-||++.+++||.--|.++..+..++.+-+.
T Consensus 45 aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence 345789985 4689999986655 89999998654432222211 1235699999999999999999999999865443
Q ss_pred eEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecC-CeEEEE
Q psy14257 572 VTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRP-REIRGV 650 (841)
Q Consensus 572 ~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~-~~i~~~ 650 (841)
...+... .+|+-|..|+. .|+.++. +.|+.+
T Consensus 123 ~~~~~y~----------------------------------------~EGWGLt~dg~--------~Li~SDGS~~L~~~ 154 (264)
T PF05096_consen 123 IGTFPYP----------------------------------------GEGWGLTSDGK--------RLIMSDGSSRLYFL 154 (264)
T ss_dssp EEEEE-S----------------------------------------SS--EEEECSS--------CEEEE-SSSEEEEE
T ss_pred EEEEecC----------------------------------------CcceEEEcCCC--------EEEEECCccceEEE
Confidence 3322110 14555554433 2334433 233333
Q ss_pred ecCCCCccccceeecCC----CCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccC
Q psy14257 651 DLEHPYYHTIPTISIPQ----VFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726 (841)
Q Consensus 651 ~l~~~~~~~~~~~~~~~----~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (841)
+ +........+.+.. +.....|.|- +++||----.+..|.|++...+.+...+| ++++........
T Consensus 155 d--P~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iD------ls~L~~~~~~~~ 224 (264)
T PF05096_consen 155 D--PETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWID------LSGLRPEVGRDK 224 (264)
T ss_dssp ---TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-------HHHHHHHTSTT
T ss_pred C--CcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEE------hhHhhhcccccc
Confidence 2 22211111122211 1234456654 78887666678899999998877433332 222211111000
Q ss_pred ceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 727 GQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 727 ~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
.. ....+-.+|||.|+.+++||+| ...=+++..+.|
T Consensus 225 ~~-----~~~~dVLNGIAyd~~~~~l~vT--GK~Wp~lyeV~l 260 (264)
T PF05096_consen 225 SR-----QPDDDVLNGIAYDPETDRLFVT--GKLWPKLYEVKL 260 (264)
T ss_dssp ST-------TTS-EEEEEEETTTTEEEEE--ETT-SEEEEEEE
T ss_pred cc-----cccCCeeEeEeEeCCCCEEEEE--eCCCCceEEEEE
Confidence 00 0124457899999999999999 544456655544
No 98
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.07 E-value=0.48 Score=48.96 Aligned_cols=145 Identities=12% Similarity=0.049 Sum_probs=79.0
Q ss_pred EEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCC
Q psy14257 415 LYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGA 494 (841)
Q Consensus 415 LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~ 494 (841)
+.++-...+.|.+.+++.................+.+.+...+|+.+.. .+.|...+++......... ..-.
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~~~~~~~~~~~~~-----~~~~ 94 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS---DKTIRLWDLETGECVRTLT-----GHTS 94 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC---CCeEEEEEcCcccceEEEe-----ccCC
Confidence 3333334677888777654322222222233348888887656666553 4677777776532222222 1223
Q ss_pred CceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEeccCCc
Q psy14257 495 WPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 495 ~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.+..+.+.+. ++++++....+.|...++............ ......+++.. +.++++-...+.|...+..+++
T Consensus 95 ~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 168 (289)
T cd00200 95 YVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK 168 (289)
T ss_pred cEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccC--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc
Confidence 5677888765 566666666788999988733332222221 22356677644 4444444345666666554333
No 99
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.06 E-value=0.097 Score=59.63 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=126.1
Q ss_pred ccccccccccccEEEEeccccceeeecccccCCcceeEEEecC--CCeEEEEEecCCcccceEEEEeCCCCCccceEEee
Q psy14257 229 HELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVI--DDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDW 306 (841)
Q Consensus 229 ~~I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~--~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~ 306 (841)
.+|+..+.++.+...+.........+.|.++... |.++... ..+|+..++.++. .+.+ ...-..-..+++.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~--la~~s~~~~~~~i~i~dl~tg~---~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSK--LAYVSFENKKSQLVVHDLRSGA---RKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCE--EEEEEecCCCcEEEEEeCCCCc---eEEE-ecCCCccCceeECC
Confidence 3555566666665555444344667788776544 6665332 3468888876653 2222 21111223466666
Q ss_pred ecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeC--CCCeEEEEEecCCccE
Q psy14257 307 IGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDS--HLNTVESVRVDGSERT 384 (841)
Q Consensus 307 ~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~--~~~~I~~~~ldG~~~~ 384 (841)
.++.+++.-.. .....|+..++++...+.+.. .-......++.+++++|+++-. ..-.|+.++.+|...+
T Consensus 258 DG~~La~~~~~-------~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 258 DGSRLAFASSK-------DGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCEEEEEEec-------CCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 55444442111 111258888887766555533 2233557889999888887643 3457888888777655
Q ss_pred EEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 385 ~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
.+ .... . ..++...++.|+++.. ..|.+.++.+...+.+.. .. .-..++++|+..+|+++...
T Consensus 330 ~l-~~~~--~----------~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~-~~-~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 330 LV-GGRG--Y----------SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSS-TF-LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred Ee-cCCC--C----------CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecC-CC-CCCCceECCCCCEEEEEEcC
Confidence 43 1110 0 0123334467777654 567778876554443332 22 22456789988888887654
Q ss_pred CCCCeEEEecCCCCCcEEEE
Q psy14257 465 SKAPRIERCSMSGEHRSVIV 484 (841)
Q Consensus 465 ~~~~~I~r~~ldG~~~~~i~ 484 (841)
.....++..+++|...+.+.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCceEEEEEECCCCceEEcc
Confidence 22334556678888776664
No 100
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.04 E-value=0.00038 Score=43.22 Aligned_cols=23 Identities=43% Similarity=1.054 Sum_probs=21.2
Q ss_pred ceEEeecCCeeecCCCCceEeCC
Q psy14257 193 SYKCTCHAGYELEPDMFTCKSKS 215 (841)
Q Consensus 193 ~~~C~C~~G~~l~~d~~~C~~~~ 215 (841)
+|+|.|++||.+..++++|.+++
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 68999999999999999999883
No 101
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.03 E-value=0.0013 Score=43.11 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=25.2
Q ss_pred cCCCceEEEEccCCEEEEEeCCCCeEEEE
Q psy14257 348 IQWPSSLVIDYNQDILYWCDSHLNTVESV 376 (841)
Q Consensus 348 ~~~P~glavD~~~~~lYwaD~~~~~I~~~ 376 (841)
+..|.||++| .++.||++|.++++|+++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 889999999999999864
No 102
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.02 E-value=0.0016 Score=42.70 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=25.0
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
|..|.||++| .+++||++|..+++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 789999999999999864
No 103
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.98 E-value=0.19 Score=54.93 Aligned_cols=120 Identities=22% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCCCCceeEEEc--CCCCeEEEEecCCCCCeEEEecC--CCCCc--EEEE-EecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 441 GDMESPRAIALD--PRFGLLFWTDWDSKAPRIERCSM--SGEHR--SVIV-RVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 441 ~~l~~P~giavd--~~~g~Ly~td~~~~~~~I~r~~l--dG~~~--~~i~-~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
..+..|.|+++- +..|.+|.--.+ +.+.++...| ++... -.++ .. ..-..|.|+++|...++||+++.
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f----~~~sQ~EGCVVDDe~g~LYvgEE 227 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREF----KVGSQPEGCVVDDETGRLYVGEE 227 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEE----E-SS-EEEEEEETTTTEEEEEET
T ss_pred cccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEe----cCCCcceEEEEecccCCEEEecC
Confidence 356779999984 456755555433 2456666555 34432 1222 21 12357999999999999999998
Q ss_pred CCCeEEEEEcC--C-CeeEEEEcC-C-CCCCcceEEEEe-----cCeEEEEeCCCCeEEEEec
Q psy14257 514 KSDSIHTVTYD--G-KDHHVVLSN-H-DSLTHPFAIALF-----ENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 514 ~~~~I~~~~~d--G-~~~~~i~~~-~-~~l~~P~gla~~-----~~~lY~td~~~~~i~~~~~ 566 (841)
. .-|++++.+ + ..++.+... . ......-||+++ .+||.+++.++++....+.
T Consensus 228 ~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 228 D-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp T-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred c-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 5 579999876 3 344444222 2 223456899985 2689999988877655553
No 104
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.86 E-value=0.9 Score=48.77 Aligned_cols=300 Identities=12% Similarity=0.089 Sum_probs=145.6
Q ss_pred CeEEEEecCC--CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC---------CCeEEEEEcC
Q psy14257 456 GLLFWTDWDS--KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK---------SDSIHTVTYD 524 (841)
Q Consensus 456 g~Ly~td~~~--~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~---------~~~I~~~~~d 524 (841)
.++|+.|..- ...+++.++.|- .+.+.... .. ..| .+++.++++.+|.++.. .+.|+.+|..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~--~k~lGmi~---~g-~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADS--GKLLGMID---TG-FLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTT--TEEEEEEE---EE-SSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred cEEEEECCccccccceEEEEECCC--CcEEEEee---cc-cCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 3677777421 134566665443 33333310 12 223 37788999999998742 3466667766
Q ss_pred CCee--EEEEcCC---CCCCcceEEEE--ecCeEEEEeCC-CCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCC
Q psy14257 525 GKDH--HVVLSNH---DSLTHPFAIAL--FENHVYWTDWR-TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCE 596 (841)
Q Consensus 525 G~~~--~~i~~~~---~~l~~P~gla~--~~~~lY~td~~-~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~ 596 (841)
.-.. .+.+... ..+.++.-+++ .+.++|+-+.. ..+|..++...++-...+.-
T Consensus 76 TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------------- 136 (342)
T PF06433_consen 76 TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------------- 136 (342)
T ss_dssp TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-------------------
T ss_pred cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-------------------
Confidence 5422 2222221 11234444444 56788888754 45676777655554443331
Q ss_pred CCCCCCccccccCCCCceeeeCCCCceee----cCCCcccccCceeEEeecCCeEEEEecCCCCccccceeecCCCCCce
Q psy14257 597 MNNGNCSHLCLIGMNGTYKCQCPHVMKLM----SDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPN 672 (841)
Q Consensus 597 ~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~----~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 672 (841)
.||.++- +.++..++-.|.+|--+. .+|+. . .... .++ +... .++ +.+
T Consensus 137 ---PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~--------~--~~~t---~~F-~~~~---dp~-----f~~-- 188 (342)
T PF06433_consen 137 ---PGCWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKE--------A--QKST---KVF-DPDD---DPL-----FEH-- 188 (342)
T ss_dssp ---TSEEEEE-EEETTEEEEEETTSCEEEEEETSTSSE--------E--EEEE---EES-STTT---S-B------S---
T ss_pred ---CCEEEEE-ecCCCceEEEecCCceEEEEECCCCCE--------e--Eeec---ccc-CCCC---ccc-----ccc--
Confidence 5788774 444455778888874332 22210 0 0000 111 1110 111 011
Q ss_pred EEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccc----ccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 673 NLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTP----LSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 673 ~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
=+|+..++.+||+. -.+.|+.+++.|...+.+ ....++ |+ ..|| -++=+-+|++..
T Consensus 189 -~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~--~~~~~~-t~~e~~~~Wr---------------PGG~Q~~A~~~~ 248 (342)
T PF06433_consen 189 -PAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFG--KPWSLL-TDAEKADGWR---------------PGGWQLIAYHAA 248 (342)
T ss_dssp --EEETTTTEEEEEB-TTSEEEEEEETTSSEEEE--EEEESS--HHHHHTTEE---------------E-SSS-EEEETT
T ss_pred -cceECCCCeEEEEe-cCCEEEEEeccCCccccc--Cccccc-CccccccCcC---------------Ccceeeeeeccc
Confidence 24566778889987 689999999988762111 000000 11 0111 122345889988
Q ss_pred CCcEEEEecCC-----CCC--eEEEEecCCcceEEEEc----CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEE
Q psy14257 749 AQNMFIAVSSP-----TQS--KIVVCNLEGEYQTTILS----NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817 (841)
Q Consensus 749 ~~~LYw~~~~~-----~~~--~I~v~~l~g~~~~~~~~----~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~ 817 (841)
+++||+..... +.. .|-++++....|..-+. ..+...++-.+|.=++++...+.||.-|.... ..+.+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG-k~~~~ 327 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG-KLVRS 327 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC-cEEee
Confidence 99999875211 112 35555554443321111 11222333567777777777778888887652 34555
Q ss_pred EecCCCceEEEec
Q psy14257 818 AFMDGTKRETVVS 830 (841)
Q Consensus 818 ~~~dG~~~~~l~~ 830 (841)
..-=|...+++..
T Consensus 328 ~~~lG~~~~l~~~ 340 (342)
T PF06433_consen 328 IEQLGETPTLILT 340 (342)
T ss_dssp E---SSS--EEEE
T ss_pred hhccCCCceEEEe
Confidence 5545555555543
No 105
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.83 E-value=0.11 Score=59.80 Aligned_cols=234 Identities=13% Similarity=0.069 Sum_probs=133.9
Q ss_pred eeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCC-----------CEEE
Q psy14257 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDG-----------GIEK 332 (841)
Q Consensus 264 ~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~-----------~I~~ 332 (841)
.||.-|-.+.+|-|++++- +.-.+.+-........|+++....+..|+|-..--..| -.++| .+..
T Consensus 143 ~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~P-lpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 143 YLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIP-LPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred EEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccc-cCCCCCEeecccceeEEEEE
Confidence 4999999999999998862 11222333455667888888743466888744222212 11122 3333
Q ss_pred EccCCCccccccc-cCcCCCceEEEEccCCEEEEEeC---CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcc
Q psy14257 333 AGMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDS---HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408 (841)
Q Consensus 333 ~~~dG~~~~~l~~-~~~~~P~glavD~~~~~lYwaD~---~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~av 408 (841)
++.+ ...++.. .--.+|..++++++++++|++.+ ..+.+..++..-....++++..... ++
T Consensus 220 ID~e--tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie-------------a~ 284 (635)
T PRK02888 220 VDAE--TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE-------------EA 284 (635)
T ss_pred EECc--cceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH-------------Hh
Confidence 3333 1111111 11238999999999999999963 3455655555443333333332100 00
Q ss_pred ccccceEEEEecCCCcEEEEccCC-----ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC----
Q psy14257 409 LWIGKNLYWVESNLDQIEVAKLSG-----QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH---- 479 (841)
Q Consensus 409 dw~~~~LY~tD~~~~~I~v~~~~G-----~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~---- 479 (841)
--.++..|+. .++|.+++... ......+..+ .+|.|++++|+..++|++... .+.+...++.--.
T Consensus 285 vkdGK~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVankl--S~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 285 VKAGKFKTIG---GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhCCCEEEEC---CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCC--CCcEEEEEChhhhhhhh
Confidence 0112445542 35677776553 2222223222 689999999999999999977 6777777764321
Q ss_pred -----cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 480 -----RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 480 -----~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+.+++.. ...-..|-..++|.. ++.|.+-.-.+.|.+.+++.
T Consensus 359 ~~~~~~~~vvae---vevGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAE---PELGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEe---eccCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence 2223321 022346888889854 67887766566777776553
No 106
>KOG4289|consensus
Probab=96.77 E-value=0.006 Score=73.41 Aligned_cols=86 Identities=26% Similarity=0.582 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCCCCCccc----ccccccCCCCCC--CcccCCCCcEEecCCCceecCCCCccccc---cccCCCCCcc-
Q psy14257 113 ALVCDGEPACFNGEDEMFC----DEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYL---HPCEAWGTCS- 182 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~---~eC~~~~~Cs- 182 (841)
.++| .|++|+.+..| |+|- .++|.+ .|....|+|+|.|.+||. |++|+-- ..| .++.|-
T Consensus 1221 glrC----rCPpGFTgd~CeTeiDlCY--s~pC~nng~C~srEggYtCeCrpg~t----GehCEvs~~agrC-vpGvC~n 1289 (2531)
T KOG4289|consen 1221 GLRC----RCPPGFTGDYCETEIDLCY--SGPCGNNGRCRSREGGYTCECRPGFT----GEHCEVSARAGRC-VPGVCKN 1289 (2531)
T ss_pred ceeE----eCCCCCCcccccchhHhhh--cCCCCCCCceEEecCceeEEecCCcc----ccceeeecccCcc-ccceecC
Confidence 4678 99999988788 6775 457754 899999999999999997 7788732 234 456663
Q ss_pred -CceeecCCCCceEEeecCCeeecCCCCceEe
Q psy14257 183 -QDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 183 -~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
..|.+. ..|++.|.|+.| . -....|..
T Consensus 1290 ggtC~~~-~nggf~c~Cp~g-e--~e~prC~v 1317 (2531)
T KOG4289|consen 1290 GGTCVNL-LNGGFCCHCPYG-E--FEDPRCEV 1317 (2531)
T ss_pred CCEEeec-CCCceeccCCCc-c--cCCCceEE
Confidence 367765 268899999998 2 23455654
No 107
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.48 Score=48.98 Aligned_cols=233 Identities=15% Similarity=0.147 Sum_probs=119.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccC-CCccccccccCc-CCCceEEEEccCCEEEEEeCCCCeEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH-GENRSPLVTKNI-QWPSSLVIDYNQDILYWCDSHLNTVES 375 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~d-G~~~~~l~~~~~-~~P~glavD~~~~~lYwaD~~~~~I~~ 375 (841)
..++++.|-.-..-|+|.+||.. .+..++.. -...+.+..-++ +...|+.+ .++..|++|...+- ..
T Consensus 84 ~~~~l~~Dv~vse~yvyvad~ss--------GL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgf-Li 152 (370)
T COG5276 84 NARDLFADVRVSEEYVYVADWSS--------GLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGF-LI 152 (370)
T ss_pred ehhhhhheeEecccEEEEEcCCC--------ceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcE-EE
Confidence 34455555554667899999864 45554432 222222222222 33344444 58899999975443 33
Q ss_pred EEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCC-CC-CceeEEEcC
Q psy14257 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGD-ME-SPRAIALDP 453 (841)
Q Consensus 376 ~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~-l~-~P~giavd~ 453 (841)
+++.....-++...-.. +.-..+.+...++.-|++....+ +...+.......+++..- .. ..+++-+.
T Consensus 153 vdvsdpssP~lagrya~--------~~~d~~~v~ISGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vs- 222 (370)
T COG5276 153 VDVSDPSSPQLAGRYAL--------PGGDTHDVAISGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVS- 222 (370)
T ss_pred EECCCCCCceeeeeecc--------CCCCceeEEEecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEec-
Confidence 44433222222211111 00001223334466777765543 444555444444444322 21 33444444
Q ss_pred CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeE---EEeccCCEEEEEeCCCCeEEEE---EcCCCe
Q psy14257 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL---TLDYQLTRIYWIDAKSDSIHTV---TYDGKD 527 (841)
Q Consensus 454 ~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~gl---alD~~~~~LYw~d~~~~~I~~~---~~dG~~ 527 (841)
..+.|.++.+ ..+.-.+.++...-.++.. ..-..|.++ .+ .+++.|++|...+ +..+ ++.+.+
T Consensus 223 -dnr~y~vvy~---egvlivd~s~~ssp~~~gs----yet~~p~~~s~v~V--s~~~~Yvadga~g-l~~idisnp~spf 291 (370)
T COG5276 223 -DNRAYLVVYD---EGVLIVDVSGPSSPTVFGS----YETSNPVSISTVPV--SGEYAYVADGAKG-LPIIDISNPPSPF 291 (370)
T ss_pred -CCeeEEEEcc---cceEEEecCCCCCceEeec----cccCCcccccceec--ccceeeeeccccC-ceeEeccCCCCCc
Confidence 4578888876 3566666666543333331 334445554 44 5789999996443 3333 333333
Q ss_pred eEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEE
Q psy14257 528 HHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 528 ~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~ 564 (841)
...-.... -.+..||..+++++|++|..++.|.-+
T Consensus 292 l~ss~~t~--g~~a~gi~ay~~y~yiadkn~g~vV~~ 326 (370)
T COG5276 292 LSSSLDTA--GYQAAGIRAYGNYNYIADKNTGAVVDA 326 (370)
T ss_pred hhccccCC--CccccceEEecCeeEeccCCceEEEeC
Confidence 32211111 125679999999999999887766533
No 108
>KOG3509|consensus
Probab=96.53 E-value=0.0077 Score=72.20 Aligned_cols=110 Identities=33% Similarity=0.746 Sum_probs=87.6
Q ss_pred CeeccCccCcCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCC
Q psy14257 1 MTCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDET 80 (841)
Q Consensus 1 ~~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~ 80 (841)
|+|......|++..||.+-+|+....|....|++.+++|. +++|.-..|.||...+|. +++++.+|
T Consensus 1 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~----------- 66 (964)
T KOG3509|consen 1 NECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCN-NPRCVQPEALLDADSTCG--PNSTPSGC----------- 66 (964)
T ss_pred CchhhhhhhhccchhhHhhcccCCCccccccCCcchhccC-CccccCchhhhccccccC--CCCCcCCc-----------
Confidence 5788899999999999999999954555688999999998 999999999999999999 66644332
Q ss_pred CccCCCCCCCCCCCCCCCCcccCCCCCeEecCCCCCCCCCCCCCCCCCccc
Q psy14257 81 NCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131 (841)
Q Consensus 81 ~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~~C~~g~de~~C 131 (841)
.. .. -+..|.+..+.|.+- -.|.+.+..|+|.++|.+++++..|
T Consensus 67 --~~-~~---~~s~~~~~~~~c~~~-~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (964)
T KOG3509|consen 67 --NA-KP---SASDCKPTETQCRDR-LRCNPQSFQCDGTNDCKDGSDEVGC 110 (964)
T ss_pred --cc-cc---cccccCCcccccccc-hhcCCccccccCCCCCCccchhccc
Confidence 21 00 124467777888874 5788889999999999999977653
No 109
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.46 E-value=0.68 Score=47.98 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred ceEEEEecCCC--cEEEEccCC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLD--QIEVAKLSG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~--~I~v~~~~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
+.||-+....+ +|.+++++. +..+..--..-.--.||++- ++.||.-.|. ++..+..+.+- .+.+....
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk--~~~~f~yd~~t--l~~~~~~~-- 127 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWK--EGTGFVYDPNT--LKKIGTFP-- 127 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESS--SSEEEEEETTT--TEEEEEEE--
T ss_pred CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEec--CCeEEEEcccc--ceEEEEEe--
Confidence 44444443333 555666553 33222221222345789986 5799999998 78889988863 33333321
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC-eeEEEE-c-CCCCCCcceEEEEecCeEEEEeCCCCeEEEEec
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK-DHHVVL-S-NHDSLTHPFAIALFENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~-~~~~i~-~-~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~ 566 (841)
--...=||+-| +++||.+|. +++|+..|+..- ..+.+. . ....+..---|...+|+||---|.+..|.++++
T Consensus 128 --y~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 128 --YPGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp ---SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred --cCCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 12355688865 788999996 789999998753 222221 1 111122223456678999999999999999999
Q ss_pred cCCcceEEEe
Q psy14257 567 WNGSDVTLIQ 576 (841)
Q Consensus 567 ~~g~~~~~i~ 576 (841)
.+|.-...+.
T Consensus 203 ~tG~V~~~iD 212 (264)
T PF05096_consen 203 ETGKVVGWID 212 (264)
T ss_dssp TT-BEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9998776653
No 110
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.02 E-value=2.2 Score=43.80 Aligned_cols=184 Identities=12% Similarity=0.089 Sum_probs=99.3
Q ss_pred cCCEEEEEeCCCCeEEEEEe-cCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc-cCCceEE
Q psy14257 359 NQDILYWCDSHLNTVESVRV-DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK-LSGQFRR 436 (841)
Q Consensus 359 ~~~~lYwaD~~~~~I~~~~l-dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~-~~G~~~~ 436 (841)
.+++||+++ ..+.|+.++. +|+..-.......+... ....++.||+.... ++|..++ .+|+..-
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~------------~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA------------PVVDGGRVYVGTSD-GSLYALDAKTGKVLW 100 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG------------EEEETTEEEEEETT-SEEEEEETTTSCEEE
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce------------eeecccccccccce-eeeEecccCCcceee
Confidence 467777774 5667777776 44322111110000000 01123788887643 4888888 5676655
Q ss_pred EE-ecC----CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCC--------ceeEEEe
Q psy14257 437 TL-IAG----DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAW--------PNGLTLD 502 (841)
Q Consensus 437 ~l-~~~----~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~--------P~glalD 502 (841)
.. ... .+..+...+++ ++.+|.... .+.|..+++. |...... .. ....... ...+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~g~l~~~d~~tG~~~w~~-~~--~~~~~~~~~~~~~~~~~~~~~- 171 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS---SGKLVALDPKTGKLLWKY-PV--GEPRGSSPISSFSDINGSPVI- 171 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEE--TTEEEEEET---CSEEEEEETTTTEEEEEE-ES--STT-SS--EEEETTEEEEEEC-
T ss_pred eeccccccccccccccCceEe--cCEEEEEec---cCcEEEEecCCCcEEEEe-ec--CCCCCCcceeeecccccceEE-
Confidence 43 211 12234455555 567777774 3688888864 4332222 10 0001111 122333
Q ss_pred ccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceE-EEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 503 YQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFA-IALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 503 ~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~g-la~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.+++||++..... +..+++....+. . +.. ...+.+ +...++.||+++ ..+.|+.++..+|+..
T Consensus 172 -~~~~v~~~~~~g~-~~~~d~~tg~~~-w-~~~--~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 172 -SDGRVYVSSGDGR-VVAVDLATGEKL-W-SKP--ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVV 235 (238)
T ss_dssp -CTTEEEEECCTSS-EEEEETTTTEEE-E-EEC--SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEE
T ss_pred -ECCEEEEEcCCCe-EEEEECCCCCEE-E-Eec--CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEE
Confidence 3569998886544 555677766543 2 222 344555 556889999999 7899999999888743
No 111
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.02 E-value=1.6 Score=48.00 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CCCcEEEEEecccCCCCCCceeEEEec---cCCEEEEEeCCCCe
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GEHRSVIVRVDLLTSRGAWPNGLTLDY---QLTRIYWIDAKSDS 517 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~~~~~i~~~~~~~~~~~~P~glalD~---~~~~LYw~d~~~~~ 517 (841)
.+|.|+++|...|+||+.+.. ..|||+..+ +..++.+... ....-.....||+|=+ ..+.|.+++.+++.
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~---~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED---VGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred CcceEEEEecccCCEEEecCc---cEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 489999999999999999954 689999986 3344444331 1111224578999832 24688889998888
Q ss_pred EEEEEcCCC
Q psy14257 518 IHTVTYDGK 526 (841)
Q Consensus 518 I~~~~~dG~ 526 (841)
...++..+.
T Consensus 284 f~Vy~r~~~ 292 (381)
T PF02333_consen 284 FAVYDREGP 292 (381)
T ss_dssp EEEEESSTT
T ss_pred EEEEecCCC
Confidence 888887774
No 112
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.98 E-value=0.0033 Score=43.73 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=24.1
Q ss_pred ccccCCCCC--CCcccCCCCcEEecCCCceecCCCCcc
Q psy14257 134 KQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 134 C~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
|...++.|+ ..|.+++++|.|.|++||. .||..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 344566785 4899999999999999998 466655
No 113
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.69 Score=45.51 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=108.0
Q ss_pred ceeEEEeccCCEEEEEeC--CCCeEEEEEcCCCeeEEEEcCCCCCC----cceEEEEecCeEEEEeCCCCeEEEEeccCC
Q psy14257 496 PNGLTLDYQLTRIYWIDA--KSDSIHTVTYDGKDHHVVLSNHDSLT----HPFAIALFENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~--~~~~I~~~~~dG~~~~~i~~~~~~l~----~P~gla~~~~~lY~td~~~~~i~~~~~~~g 569 (841)
-.||.++ +++||.+.. +..+|++.++.+... +.+.. +. .--|++..++++|.--|..+.-++.++.+=
T Consensus 48 TQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~~--l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~ 121 (262)
T COG3823 48 TQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQE--IFSEK--LAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL 121 (262)
T ss_pred hcceeee--CCEEEEeccccccceeEEEeccCceE--EEEee--cCCccccccceeeccceEEEEEeccceeEEEChHHh
Confidence 4677776 568887764 456899999885432 12111 22 124777889999999998887777776432
Q ss_pred cceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCccccc-CceeEEeecCCe--
Q psy14257 570 SDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA-DSQFIIFSRPRE-- 646 (841)
Q Consensus 570 ~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~-~~~~l~~~~~~~-- 646 (841)
+...... .. .+|+-|..|+..-+-. ...||.+-++..
T Consensus 122 ~~lg~~~---------------------------------y~-------GeGWgLt~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 122 EELGRFS---------------------------------YE-------GEGWGLTSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred hhhcccc---------------------------------cC-------CcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence 2221100 11 1455666554432211 123333322221
Q ss_pred -EEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeeccccccccccc
Q psy14257 647 -IRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIV 725 (841)
Q Consensus 647 -i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (841)
+..+. .++--.|+.++... -++.++||--=-.+.+|.|++.+.+.+..-+| ++++-....
T Consensus 162 ~~~~v~------VT~~g~pv~~LNEL-----E~VdG~lyANVw~t~~I~rI~p~sGrV~~wid------lS~L~~~~~-- 222 (262)
T COG3823 162 ELDTVQ------VTDDGVPVSKLNEL-----EWVDGELYANVWQTTRIARIDPDSGRVVAWID------LSGLLKELN-- 222 (262)
T ss_pred hcceEE------EEECCeecccccce-----eeeccEEEEeeeeecceEEEcCCCCcEEEEEE------ccCCchhcC--
Confidence 11111 11112345444432 34578887555567899999998776211111 122111110
Q ss_pred CceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 726 GGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 726 ~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
......+-++|||.|+...++|+| ...-+.+.-+.++
T Consensus 223 ------~~~~~~nvlNGIA~~~~~~r~~iT--GK~wp~lfEVk~~ 259 (262)
T COG3823 223 ------LDKSNDNVLNGIAHDPQQDRFLIT--GKLWPLLFEVKLD 259 (262)
T ss_pred ------ccccccccccceeecCcCCeEEEe--cCcCceeEEEEec
Confidence 111235678999999999999999 5444555444443
No 114
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.51 E-value=0.0091 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=31.1
Q ss_pred ccccccCCCCCCCcccCCCCcEEecCCCceecCCCC
Q psy14257 132 DEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLI 167 (841)
Q Consensus 132 ~eC~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~ 167 (841)
++|...++.|.+.|.+++|+|.|.|+.||.+.++++
T Consensus 188 ~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 188 DLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK 223 (224)
T ss_pred hhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence 467666678999999999999999999999887765
No 115
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.37 E-value=0.012 Score=60.65 Aligned_cols=43 Identities=30% Similarity=0.557 Sum_probs=37.1
Q ss_pred CCCccccccccC-CCCCccCceeecCCCCceEEeecCCeeecCCCC
Q psy14257 165 DLITCSYLHPCE-AWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMF 209 (841)
Q Consensus 165 d~~~C~~~~eC~-~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~ 209 (841)
.++.|.+.++|. ....|.+.|.++ .|+|.|.|+.||.+..+++
T Consensus 180 ~~~~C~~~~~C~~~~~~c~~~C~~~--~g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQQVCIST--PGSYLCACTEGYALLEDNK 223 (224)
T ss_pred ccccCcCchhhcCCCCCccceEEcC--CCCEEeECCCCccCCCCCC
Confidence 467899999997 456799999999 9999999999999877664
No 116
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.15 E-value=0.019 Score=40.59 Aligned_cols=28 Identities=32% Similarity=0.806 Sum_probs=22.7
Q ss_pred CCCCC--CcccCCCCcEEecCCCceecCCCCcc
Q psy14257 139 SDCHH--DCYNTPEGFMCVCPRDMYLQPDLITC 169 (841)
Q Consensus 139 ~~C~~--~C~~~~g~~~C~C~~Gy~l~~d~~~C 169 (841)
..|.+ .|.++.++|.|.|++||. ++..|
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 46754 899999999999999997 45555
No 117
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.83 E-value=2.8 Score=45.70 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=96.9
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-----ccc-----ccccc---Cc----CCCceEEEEc
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-----NRS-----PLVTK---NI----QWPSSLVIDY 358 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-----~~~-----~l~~~---~~----~~P~glavD~ 358 (841)
+..-.||+.++ .+..|+..+|.+.. ....+++++..+.. ... ++... .+ ..|.||++ .
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPN---KGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-P 93 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCC---CCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-e
Confidence 33456777775 34567777876641 12345666554431 000 00000 11 26779999 6
Q ss_pred cCCEEEEEeCCC------CeEEEEEecCCccEEEEeeeeecCCCc--cccCCCC---CCccccccceEEEEecCC-----
Q psy14257 359 NQDILYWCDSHL------NTVESVRVDGSERTVSFNLEVLGSDSR--VGIPNCR---PEDNLWIGKNLYWVESNL----- 422 (841)
Q Consensus 359 ~~~~lYwaD~~~------~~I~~~~ldG~~~~~~~~~~~~~~~~~--~~i~~~~---~~avdw~~~~LY~tD~~~----- 422 (841)
.++.+||++... ++|++++.+|...+.+.-+..+..... -+.+.++ ++++...+..||.+-...
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG 173 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence 889999999999 999999999988666522222211100 1222221 234555555677654321
Q ss_pred ----------CcEEEEccC--Cce-EEEEec-C------CCCCceeEEEcCCCCeEEEEecCC-----CCCeEEEecCCC
Q psy14257 423 ----------DQIEVAKLS--GQF-RRTLIA-G------DMESPRAIALDPRFGLLFWTDWDS-----KAPRIERCSMSG 477 (841)
Q Consensus 423 ----------~~I~v~~~~--G~~-~~~l~~-~------~l~~P~giavd~~~g~Ly~td~~~-----~~~~I~r~~ldG 477 (841)
-+|..++.. |.. ...... + .-..+..|+..+. +.|++-+... ...+|+++++.+
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d-~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD-GRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC-CcEEEEEccCCCCccceEEEEEEEccc
Confidence 246666654 211 111111 1 2345667777665 5578887541 245788888764
Q ss_pred C
Q psy14257 478 E 478 (841)
Q Consensus 478 ~ 478 (841)
.
T Consensus 253 a 253 (326)
T PF13449_consen 253 A 253 (326)
T ss_pred c
Confidence 3
No 118
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.65 E-value=2.6 Score=47.66 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=100.3
Q ss_pred cCcCCCceEEEEccCCEEEEEeC----CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccce-EEEE--
Q psy14257 346 KNIQWPSSLVIDYNQDILYWCDS----HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKN-LYWV-- 418 (841)
Q Consensus 346 ~~~~~P~glavD~~~~~lYwaD~----~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~-LY~t-- 418 (841)
.......|+.....+..+|++.. ....++..+.||.+.+.+........... ....+.. .|.+
T Consensus 144 ~~~e~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~----------ws~~~~~~~y~~f~ 213 (425)
T COG0823 144 AIYEKLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPA----------WSPDGKKLAYVSFE 213 (425)
T ss_pred hhhhhhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccc----------cCcCCCceEEEEEe
Confidence 33444555555556677776665 55677888888877766533211111000 0001122 2332
Q ss_pred ecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCcee
Q psy14257 419 ESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498 (841)
Q Consensus 419 D~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g 498 (841)
.....+|++.+++......++... ..-..-++.|++.+|.++-....+..|+.++++++....+... .... ..
T Consensus 214 ~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~----~gi~--~~ 286 (425)
T COG0823 214 LGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG----FGIN--TS 286 (425)
T ss_pred cCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC----Cccc--cC
Confidence 222246888888876666665421 2233456788877777776555688999999999886665431 1111 13
Q ss_pred EEEeccCCEEEEEeCCC--CeEEEEEcCCCeeEEEEcC
Q psy14257 499 LTLDYQLTRIYWIDAKS--DSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~--~~I~~~~~dG~~~~~i~~~ 534 (841)
=.+-+++.+||++-.+. -.|++++++|+..+.+-..
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 33456677777765433 3899999999887665443
No 119
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.64 E-value=1.6 Score=46.13 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=32.1
Q ss_pred CCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEEE
Q psy14257 538 LTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLI 575 (841)
Q Consensus 538 l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i 575 (841)
+..|.+--.++|+||+.|+.++.|.++++.+|+...+.
T Consensus 202 LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va 239 (335)
T TIGR03032 202 LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVA 239 (335)
T ss_pred ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEE
Confidence 66788888899999999999999999998778755543
No 120
>KOG1446|consensus
Probab=94.64 E-value=6.8 Score=41.05 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=121.9
Q ss_pred CCEEEEcc-CCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCC
Q psy14257 328 GGIEKAGM-HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406 (841)
Q Consensus 328 ~~I~~~~~-dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~ 406 (841)
..|..++. +|+..+++..++.+--...-.+..+.-||=+.....+|+-.++........+.-.. +....+
T Consensus 36 Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~---~~V~sL------ 106 (311)
T KOG1446|consen 36 DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHK---KRVNSL------ 106 (311)
T ss_pred CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCC---ceEEEE------
Confidence 35556653 56666666655433333333333334444444455667666664433222211100 000000
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC--CCCCcEEEE
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM--SGEHRSVIV 484 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l--dG~~~~~i~ 484 (841)
.+..+ +..|.+-+..+.|...++.-.....++. +..+--.|+||. |.+|-+-.++ ..|.-.++ =+.+.....
T Consensus 107 ~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~-GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 107 SVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE-GLIFALANGS--ELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred EecCC-CCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCC-CcEEEEecCC--CeEEEEEecccCCCCceeE
Confidence 01111 4677777777788888887665555553 345556899986 8887777663 35555554 233322222
Q ss_pred EecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEE
Q psy14257 485 RVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVI 562 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~ 562 (841)
... ......=+.|.+.+.++.|.++.. .+.|+.++ ++|.-..++-.......-|.+-+. -++....+-...++|.
T Consensus 181 ~i~--~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 181 SIT--DNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIH 257 (311)
T ss_pred ccC--CCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEE
Confidence 210 022334467778776666666554 45566554 467655555433222334433333 3566666666778898
Q ss_pred EEeccCCcceEEEe
Q psy14257 563 RANKWNGSDVTLIQ 576 (841)
Q Consensus 563 ~~~~~~g~~~~~i~ 576 (841)
..+..+|..+....
T Consensus 258 vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 258 VWNLETGKKVAVLR 271 (311)
T ss_pred EEEcCCCcEeeEec
Confidence 88887777665543
No 121
>KOG0315|consensus
Probab=94.53 E-value=0.52 Score=47.45 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=93.0
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeecCCC-CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeee
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQV-FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE 712 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~ 712 (841)
++..+|..+....||.+++....+.. ...+... +|+.+|.|-...+++|=. .+.++++..++..-.
T Consensus 50 pdk~~LAaa~~qhvRlyD~~S~np~P--v~t~e~h~kNVtaVgF~~dgrWMyTg-seDgt~kIWdlR~~~---------- 116 (311)
T KOG0315|consen 50 PDKKDLAAAGNQHVRLYDLNSNNPNP--VATFEGHTKNVTAVGFQCDGRWMYTG-SEDGTVKIWDLRSLS---------- 116 (311)
T ss_pred CCcchhhhccCCeeEEEEccCCCCCc--eeEEeccCCceEEEEEeecCeEEEec-CCCceEEEEeccCcc----------
Confidence 33556777778889999998776653 3334333 789999999877777744 478999988887644
Q ss_pred eecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc-ceEEEEcCCCCCCCcCCCc
Q psy14257 713 FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKI 791 (841)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~-~~~~~~~~~~~~~~~l~~p 791 (841)
.+.... ....++.+.+.+....|+.. | .++.|.+.+|... ....++..+ ....
T Consensus 117 ----------------~qR~~~-~~spVn~vvlhpnQteLis~--d-qsg~irvWDl~~~~c~~~liPe~------~~~i 170 (311)
T KOG0315|consen 117 ----------------CQRNYQ-HNSPVNTVVLHPNQTELISG--D-QSGNIRVWDLGENSCTHELIPED------DTSI 170 (311)
T ss_pred ----------------cchhcc-CCCCcceEEecCCcceEEee--c-CCCcEEEEEccCCccccccCCCC------Ccce
Confidence 222222 33567889999999999998 4 4788999999765 444555431 5788
Q ss_pred eEEEEeCCCCeE
Q psy14257 792 SSIAVWPVKGKM 803 (841)
Q Consensus 792 ~~iavd~~~g~l 803 (841)
++|+|+|...+|
T Consensus 171 ~sl~v~~dgsml 182 (311)
T KOG0315|consen 171 QSLTVMPDGSML 182 (311)
T ss_pred eeEEEcCCCcEE
Confidence 899999975544
No 122
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=94.25 E-value=3.1 Score=48.34 Aligned_cols=153 Identities=20% Similarity=0.178 Sum_probs=80.8
Q ss_pred eCCCCCccceEE---eeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCC
Q psy14257 293 QTGLSTAEGLAV---DWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSH 369 (841)
Q Consensus 293 ~~~l~~p~giav---D~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~ 369 (841)
.-|--+-|+.+| ++ +++.+|-+| |...+.|+|+-.+......= ....-.+ ...++||++-..
T Consensus 240 AlGRf~HE~a~v~~~~~--~~~vvY~gD------D~~~~~lYkFVs~~~~~~~~------~~~~~~l-l~~GtLyaak~~ 304 (524)
T PF05787_consen 240 ALGRFAHEAAAVVLADP--GRVVVYMGD------DGRNGYLYKFVSDKPWDPGD------RAANRDL-LDEGTLYAAKFN 304 (524)
T ss_pred ecccccccceeEEeecC--CeEEEEEEe------cCCCCeEEEEecCCCCCCcc------cchhhhh-hhCCEeceEEEC
Confidence 334446777787 65 345555555 45566888887765422100 0000000 146888888763
Q ss_pred -CCeEEEEEecCCc------------cEEEEeeeeecCCCccccCCCCCCc--cccccceEEEEecCCC-----------
Q psy14257 370 -LNTVESVRVDGSE------------RTVSFNLEVLGSDSRVGIPNCRPED--NLWIGKNLYWVESNLD----------- 423 (841)
Q Consensus 370 -~~~I~~~~ldG~~------------~~~~~~~~~~~~~~~~~i~~~~~~a--vdw~~~~LY~tD~~~~----------- 423 (841)
.+.++-+.|.-.. ..+++.....+ +..-+.+..+++. +++.++.||++-+...
T Consensus 305 ~~g~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA-~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n 383 (524)
T PF05787_consen 305 QDGTGEWVPLGHGQGGLTAKNGFADQADVLIETRRAA-DAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAAN 383 (524)
T ss_pred CCCcEEEEECCCcccccccCCCCCChHHhhhhhhhcc-ccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCC
Confidence 3556666653221 00111110000 1111123345554 4588899999875544
Q ss_pred --------cEEEEccCCc-------eEEE-Eec----------------CCCCCceeEEEcCCCCeEEEEe
Q psy14257 424 --------QIEVAKLSGQ-------FRRT-LIA----------------GDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 424 --------~I~v~~~~G~-------~~~~-l~~----------------~~l~~P~giavd~~~g~Ly~td 462 (841)
+|+++..++. .... +.. ..+..|-+|++|+. |.||+.+
T Consensus 384 ~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 384 PRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred cccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCC-CCEEEEe
Confidence 7888887765 2222 221 12679999999996 5566654
No 123
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.02 E-value=2 Score=46.84 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=47.1
Q ss_pred CceeEEEcCCCCeEEEEecCCCC------CeEEEecCCCCCcEEE-EEeccc--------CCCCCCceeEEEeccCCEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKA------PRIERCSMSGEHRSVI-VRVDLL--------TSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~------~~I~r~~ldG~~~~~i-~~~~~~--------~~~~~~P~glalD~~~~~LY 509 (841)
.|.||++ +.+|.+||++-+ . ++|++++++|.....+ +...+. ...=....|||+.+.+++||
T Consensus 86 D~Egi~~-~~~g~~~is~E~--~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEG--GRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLF 162 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCC--ccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEE
Confidence 5679999 677999999977 6 9999999999876555 221110 01123457899998877788
Q ss_pred EEeC
Q psy14257 510 WIDA 513 (841)
Q Consensus 510 w~d~ 513 (841)
.+-.
T Consensus 163 ~~~E 166 (326)
T PF13449_consen 163 AAME 166 (326)
T ss_pred EEEC
Confidence 8653
No 124
>KOG1225|consensus
Probab=93.98 E-value=0.19 Score=57.09 Aligned_cols=61 Identities=26% Similarity=0.610 Sum_probs=40.1
Q ss_pred CCCCCCCCccc--ccccccCCCCC--CCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEE
Q psy14257 121 ACFNGEDEMFC--DEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKC 196 (841)
Q Consensus 121 ~C~~g~de~~C--~eC~~~~~~C~--~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C 196 (841)
.|.+||.+..| ..|. ..|+ .+|. .-+|.|.+||. |..|.... |...+ .|. .+ |
T Consensus 299 iC~~g~~G~dCs~~~cp---adC~g~G~Ci----~G~C~C~~Gy~----G~~C~~~~-C~~~g----~cv-----~g--C 355 (525)
T KOG1225|consen 299 ICNPGYSGKDCSIRRCP---ADCSGHGKCI----DGECLCDEGYT----GELCIQRA-CSGGG----QCV-----NG--C 355 (525)
T ss_pred ecCCCccccccccccCC---ccCCCCCccc----CCceEeCCCCc----CCcccccc-cCCCc----eec-----cC--c
Confidence 89999988777 2332 4564 3676 34899999997 66676553 53333 332 23 8
Q ss_pred eecCCeee
Q psy14257 197 TCHAGYEL 204 (841)
Q Consensus 197 ~C~~G~~l 204 (841)
.|..||..
T Consensus 356 ~C~~Gw~G 363 (525)
T KOG1225|consen 356 KCKKGWRG 363 (525)
T ss_pred eeccCccC
Confidence 89999874
No 125
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.90 E-value=0.14 Score=43.60 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
..+..|+||++|+..+.||+++...+.|..+..
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 478999999999999999999999999988764
No 126
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.89 E-value=0.053 Score=37.36 Aligned_cols=24 Identities=33% Similarity=0.879 Sum_probs=21.3
Q ss_pred CCCCC-CcccCCCCcEEecCCCcee
Q psy14257 139 SDCHH-DCYNTPEGFMCVCPRDMYL 162 (841)
Q Consensus 139 ~~C~~-~C~~~~g~~~C~C~~Gy~l 162 (841)
..|.+ .|.++.++|.|.|++||.+
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 56877 8999999999999999975
No 127
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=2.1 Score=42.21 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=48.4
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEec------------CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA------------GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~------------~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
.+.|+.|.||--=+.+.+|.+++++...+...+. ....-++|||.+|..+++|+|-.. =+.++-+.
T Consensus 180 ELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~--wp~lfEVk 257 (262)
T COG3823 180 ELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL--WPLLFEVK 257 (262)
T ss_pred ceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc--CceeEEEE
Confidence 3567789998777777889988887443332221 123468999999999999998744 56676666
Q ss_pred CCC
Q psy14257 475 MSG 477 (841)
Q Consensus 475 ldG 477 (841)
+++
T Consensus 258 ~~~ 260 (262)
T COG3823 258 LDE 260 (262)
T ss_pred ecC
Confidence 554
No 128
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=93.54 E-value=0.071 Score=37.62 Aligned_cols=30 Identities=30% Similarity=0.907 Sum_probs=23.4
Q ss_pred ccccCCCCCccC--ceeecCCCCceEEeecCCee
Q psy14257 172 LHPCEAWGTCSQ--DCEPSVSNNSYKCTCHAGYE 203 (841)
Q Consensus 172 ~~eC~~~~~Cs~--~C~~~~~~g~~~C~C~~G~~ 203 (841)
+++|.....|.+ .|.++ .++|.|.|+.||.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~--~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNT--VGSYRCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECC--CCCeEeECCCCCc
Confidence 456743256755 89998 9999999999997
No 129
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=93.51 E-value=0.74 Score=53.37 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=52.5
Q ss_pred eCCCCCccceEEeeecCceeEEEeeecCC---------C-CCCCCCCEEEEccCCC-------cccccc-----------
Q psy14257 293 QTGLSTAEGLAVDWIGKNLYMFWAFWSLS---------P-SNSSDGGIEKAGMHGE-------NRSPLV----------- 344 (841)
Q Consensus 293 ~~~l~~p~giavD~~~~~~y~~~td~~~~---------~-~~~~~~~I~~~~~dG~-------~~~~l~----------- 344 (841)
.+.+.+||+|++++..+.+|+..|+.+.. | .....|.|+|...++. ....++
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 34578999999999999999998876621 1 1334678999998765 111111
Q ss_pred ------ccCcCCCceEEEEccCCEEEE-EeCCC
Q psy14257 345 ------TKNIQWPSSLVIDYNQDILYW-CDSHL 370 (841)
Q Consensus 345 ------~~~~~~P~glavD~~~~~lYw-aD~~~ 370 (841)
...+..|-+|++|+.++ ||+ .|...
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~ 457 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGG 457 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCC
Confidence 22477899999998655 554 44443
No 130
>KOG1217|consensus
Probab=93.50 E-value=0.34 Score=55.74 Aligned_cols=62 Identities=27% Similarity=0.657 Sum_probs=48.3
Q ss_pred CCcccCCCCcEEecCCCceecCCCCccccccccCCCCCcc--CceeecCCCCceEEeecCCeeecCC
Q psy14257 143 HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS--QDCEPSVSNNSYKCTCHAGYELEPD 207 (841)
Q Consensus 143 ~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs--~~C~~~~~~g~~~C~C~~G~~l~~d 207 (841)
..|.++.+++.|.|++||.+..- ..|.++++|.....|. ..|.+. .+.|.|.|++||.....
T Consensus 243 ~~c~~~~~~~~C~~~~g~~~~~~-~~~~~~~~C~~~~~c~~~~~C~~~--~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 243 GTCVNTVGSYTCRCPEGYTGDAC-VTCVDVDSCALIASCPNGGTCVNV--PGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CcccccCCceeeeCCCCcccccc-ceeeeccccCCCCccCCCCeeecC--CCcceeeCCCCCCCCCC
Confidence 57899999999999999986431 4677888886432364 489888 77899999999986543
No 131
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.49 E-value=10 Score=41.70 Aligned_cols=214 Identities=15% Similarity=0.183 Sum_probs=92.9
Q ss_pred CEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeee---------eecCCC--c
Q psy14257 329 GIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE---------VLGSDS--R 397 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~---------~~~~~~--~ 397 (841)
.++..+++....++|....-....|..+.+..+.||+... ...|++++++..+.++++..+ +.+.+. .
T Consensus 61 nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 61 NLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred ceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE
Confidence 5677777777777776654343446777788899887653 368999999998887775432 111111 0
Q ss_pred cccCCCCCCccccc------c-ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCC--eEEEEe--cCCC
Q psy14257 398 VGIPNCRPEDNLWI------G-KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFG--LLFWTD--WDSK 466 (841)
Q Consensus 398 ~~i~~~~~~avdw~------~-~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g--~Ly~td--~~~~ 466 (841)
+|+.. ...||. . +.+|-+ .-..+|..+++.+...++++.+. ..-.-+-+.|... .+|.-+ |..-
T Consensus 140 ~g~e~---~~~d~~~l~~~~~f~e~~~a-~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~V 214 (386)
T PF14583_consen 140 VGIEI---SREDWKPLTKWKGFREFYEA-RPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLV 214 (386)
T ss_dssp EEEEE---EGGG-----SHHHHHHHHHC----EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTS
T ss_pred EEEEE---eehhccCccccHHHHHHHhh-CCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCccee
Confidence 11110 001110 0 001111 11347888888877777777654 1222233334332 233333 4422
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEE-eCCCC---eEEEEEcCCCeeEEEEcCCCCCCcce
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWI-DAKSD---SIHTVTYDGKDHHVVLSNHDSLTHPF 542 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~-d~~~~---~I~~~~~dG~~~~~i~~~~~~l~~P~ 542 (841)
..+|+.++.||++.+.+... .....-.-=-..+++.+|++. -...+ .|..++++...++.+... |.
T Consensus 215 d~RiW~i~~dg~~~~~v~~~----~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~------p~ 284 (386)
T PF14583_consen 215 DQRIWTINTDGSNVKKVHRR----MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM------PW 284 (386)
T ss_dssp S-SEEEEETTS---EESS-------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------S
T ss_pred ceEEEEEEcCCCcceeeecC----CCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC------Cc
Confidence 46999999999988776431 111000001123333444332 21222 567777776555544432 22
Q ss_pred EE--E-EecCeEEEEeCCC
Q psy14257 543 AI--A-LFENHVYWTDWRT 558 (841)
Q Consensus 543 gl--a-~~~~~lY~td~~~ 558 (841)
.. - -.++.|++.|...
T Consensus 285 ~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 285 CSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEE-TTSSEEEEEE--
T ss_pred eeeeEEcCCCCEEEecCCC
Confidence 22 2 2467899988653
No 132
>KOG0289|consensus
Probab=93.42 E-value=14 Score=40.40 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=110.6
Q ss_pred CceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEcc
Q psy14257 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL 430 (841)
Q Consensus 351 P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~ 430 (841)
-.++.+.+.++.+.|++........---+|+...++.... ..+++.. +.-+-.|.||.+-...+.+.+.++
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~-----s~v~~ts----~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET-----SDVEYTS----AAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-----ccceeEE----eeEcCCceEEeccCCCceEEEEEc
Confidence 4788999999999999876665555545666555543210 0000000 001112788888888888888888
Q ss_pred CCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCcEEEEEecccCCCCCCceeEEEeccCCEEE
Q psy14257 431 SGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIY 509 (841)
Q Consensus 431 ~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~~~i~~~~~~~~~~~~P~glalD~~~~~LY 509 (841)
.......-..........|++. ++||-..+... ...|.-.+|.- .+.+.+.. ...+..+.+.+|..+..|-
T Consensus 377 ks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~ad--d~~V~lwDLRKl~n~kt~~l-----~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFS-ENGYWLATAAD--DGSVKLWDLRKLKNFKTIQL-----DEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred CCccccccCCCCCCceeEEEec-cCceEEEEEec--CCeEEEEEehhhcccceeec-----cccccceeEEEcCCCCeEE
Confidence 6544322233334456789998 45876666554 44466666532 23333333 3444568899997655554
Q ss_pred EEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEe
Q psy14257 510 WIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565 (841)
Q Consensus 510 w~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~ 565 (841)
.+ ...=+|+.+.-....-+.+...........++.+.+...|..+....++.++-
T Consensus 449 ~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred ee-cceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 44 32225555544343333343322222233566666777888776666665543
No 133
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.23 E-value=16 Score=40.34 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=57.3
Q ss_pred ceeEEEc-CC-CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC----CCeEE
Q psy14257 446 PRAIALD-PR-FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK----SDSIH 519 (841)
Q Consensus 446 P~giavd-~~-~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~----~~~I~ 519 (841)
...+.+- +. .++|++++ ...-.+|+.++.+|...+.|.. ....--.-+.+|..+++||++-.. ...|+
T Consensus 237 ~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~-----G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTS-----GDWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred ecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceecccc-----CceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 3344443 33 45566666 4346799999999987665543 222111347789999999998754 45899
Q ss_pred EEEcC-CCeeEEEEcCCCCCCcceEEEEec
Q psy14257 520 TVTYD-GKDHHVVLSNHDSLTHPFAIALFE 548 (841)
Q Consensus 520 ~~~~d-G~~~~~i~~~~~~l~~P~gla~~~ 548 (841)
+++++ +...+.+-... ..+ +.+++..
T Consensus 311 ~v~~~~~~~~~~LT~~~--~~~-~~~~~Sp 337 (353)
T PF00930_consen 311 RVSLDSGGEPKCLTCED--GDH-YSASFSP 337 (353)
T ss_dssp EEETTETTEEEESSTTS--STT-EEEEE-T
T ss_pred EEEeCCCCCeEeccCCC--CCc-eEEEECC
Confidence 99999 77776654332 222 4555543
No 134
>KOG1225|consensus
Probab=93.12 E-value=0.31 Score=55.46 Aligned_cols=67 Identities=30% Similarity=0.553 Sum_probs=41.5
Q ss_pred CCCCCCCCccccc--ccccCCCCCCCcccCCCCcEEecCCCceecCCCCccccccccCCCCCccC--ceeecCCCCceEE
Q psy14257 121 ACFNGEDEMFCDE--KQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQ--DCEPSVSNNSYKC 196 (841)
Q Consensus 121 ~C~~g~de~~C~e--C~~~~~~C~~~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~--~C~~~~~~g~~~C 196 (841)
-|++||.+..|++ |. . .|++.=.+..+ .|.|++||. |+.|.... | ...|+. .|. .-+|
T Consensus 268 IC~~Gf~G~dC~e~~Cp--~-~cs~~g~~~~g--~CiC~~g~~----G~dCs~~~-c--padC~g~G~Ci------~G~C 329 (525)
T KOG1225|consen 268 ICPPGFTGDDCDELVCP--V-DCSGGGVCVDG--ECICNPGYS----GKDCSIRR-C--PADCSGHGKCI------DGEC 329 (525)
T ss_pred eCCCCCcCCCCCcccCC--c-ccCCCceecCC--EeecCCCcc----cccccccc-C--CccCCCCCccc------CCce
Confidence 7899999888866 53 2 26542222334 999999997 66665432 3 133422 443 2368
Q ss_pred eecCCeeec
Q psy14257 197 TCHAGYELE 205 (841)
Q Consensus 197 ~C~~G~~l~ 205 (841)
.|.+||...
T Consensus 330 ~C~~Gy~G~ 338 (525)
T KOG1225|consen 330 LCDEGYTGE 338 (525)
T ss_pred EeCCCCcCC
Confidence 899998643
No 135
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.03 E-value=0.17 Score=43.00 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=32.4
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEec
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVD 379 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ld 379 (841)
.+..++..|+||++|++++.||+++...+.|..+...
T Consensus 48 ~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 48 VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4556899999999999999999999999999887653
No 136
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.03 E-value=18 Score=40.92 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=76.8
Q ss_pred CCEEEEccCCCcccccccc--CcCCCceEEEEccCCEEEEEeCCC---CeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 328 GGIEKAGMHGENRSPLVTK--NIQWPSSLVIDYNQDILYWCDSHL---NTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 328 ~~I~~~~~dG~~~~~l~~~--~~~~P~glavD~~~~~lYwaD~~~---~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
..+...+-||.....+... .+..|. +-+...+|....... -+|+..+++.+.+.++.+........
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~---ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P------ 243 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPA---WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAP------ 243 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccc---cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCc------
Confidence 4566666666655555332 111111 112233333333222 35888888877777765522211110
Q ss_pred CCCCccccccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 403 CRPEDNLWIGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
++...+.+|.++-.. .-.|++++++++....+... ...=..=.+.|++.+|+++.-....++|++++++|+..
T Consensus 244 ----~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 244 ----AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred ----cCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 222334666666543 44788999998875543321 11111223556666666664333578999999999987
Q ss_pred EEEEE
Q psy14257 481 SVIVR 485 (841)
Q Consensus 481 ~~i~~ 485 (841)
+.+..
T Consensus 319 ~riT~ 323 (425)
T COG0823 319 TRLTF 323 (425)
T ss_pred eEeec
Confidence 66654
No 137
>KOG0285|consensus
Probab=92.66 E-value=16 Score=38.99 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=125.8
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCE
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I 330 (841)
+-.||+++.+ .-|.+...++.|...++..|. .+..+.......+|+||.. +.=|+|-. ..++.|
T Consensus 154 Vr~vavdP~n---~wf~tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~--rHpYlFs~--------gedk~V 217 (460)
T KOG0285|consen 154 VRSVAVDPGN---EWFATGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSK--RHPYLFSA--------GEDKQV 217 (460)
T ss_pred EEEEeeCCCc---eeEEecCCCceeEEEEcccCe---EEEeecchhheeeeeeecc--cCceEEEe--------cCCCee
Confidence 4566776642 266667777888888887663 3444555667899999986 55787732 223345
Q ss_pred EEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCcccc
Q psy14257 331 EKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410 (841)
Q Consensus 331 ~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw 410 (841)
.-+++.-..+..-.-..+..-..|++.+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPT--------------------------------------------------- 246 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPT--------------------------------------------------- 246 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEecccc---------------------------------------------------
Confidence 55555422111111112222222232221
Q ss_pred ccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC-CCCCcEEEEEeccc
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM-SGEHRSVIVRVDLL 489 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~~~~~ 489 (841)
-.+.+|-.....|.+-++..+....++.+.-.....+.+.|.++.+|-.... ..|.--++ .|....++..
T Consensus 247 --ldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D---~tvrlWDl~agkt~~tlt~---- 317 (460)
T KOG0285|consen 247 --LDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD---STVRLWDLRAGKTMITLTH---- 317 (460)
T ss_pred --ceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC---ceEEEeeeccCceeEeeec----
Confidence 2233444444566666666554444444332233445555555555433322 23332232 2333333332
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc-CCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccC
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY-DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~-dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~ 568 (841)
.-.....|++.+. ..+| +.+..+.|...++ .|...+- +++. -..-..|++.++.+|++-..++.|...+-.+
T Consensus 318 --hkksvral~lhP~-e~~f-ASas~dnik~w~~p~g~f~~n-lsgh--~~iintl~~nsD~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 318 --HKKSVRALCLHPK-ENLF-ASASPDNIKQWKLPEGEFLQN-LSGH--NAIINTLSVNSDGVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred --ccceeeEEecCCc-hhhh-hccCCccceeccCCccchhhc-cccc--cceeeeeeeccCceEEEcCCceEEEEEecCc
Confidence 2233466777653 3444 4444566776654 3444433 2221 1122456778889999988888888888767
Q ss_pred CcceEEE
Q psy14257 569 GSDVTLI 575 (841)
Q Consensus 569 g~~~~~i 575 (841)
|-+.+.+
T Consensus 391 g~nyQ~~ 397 (460)
T KOG0285|consen 391 GHNYQRG 397 (460)
T ss_pred Ccccccc
Confidence 7665543
No 138
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.58 E-value=19 Score=42.64 Aligned_cols=194 Identities=11% Similarity=-0.002 Sum_probs=102.6
Q ss_pred CcCCCceEEEEccCCEEEEEeC-------CCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEe
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDS-------HLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVE 419 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~-------~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD 419 (841)
.+..+...++.++++++.++.. ....|+.++..|..+..+... .+..+ ..+..++.|+++.
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~P-----------sWspDG~~lw~v~ 415 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRP-----------SWSLDADAVWVVV 415 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCc-----------eECCCCCceEEEe
Confidence 4457788999999888877762 344788888766553332211 11111 1111224444442
Q ss_pred c-----------CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEE---ecCCCCCcEEEEE
Q psy14257 420 S-----------NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER---CSMSGEHRSVIVR 485 (841)
Q Consensus 420 ~-----------~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r---~~ldG~~~~~i~~ 485 (841)
. ..+.|++..+++...+. .--..+..+++.|+..+|.+.-. ++|+. ...++.. ..+..
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~-~~l~~ 487 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQ-YALTN 487 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCc-eeecc
Confidence 2 23345554554432221 11135788999998888877662 46766 3333333 22311
Q ss_pred ecccCCCCCC-ceeEEEeccCCEEEEEeCCC-CeEEEEEcCCCeeEEEEcCCCCCCcc-eEEEEecCeEEEEeCCCCeEE
Q psy14257 486 VDLLTSRGAW-PNGLTLDYQLTRIYWIDAKS-DSIHTVTYDGKDHHVVLSNHDSLTHP-FAIALFENHVYWTDWRTNSVI 562 (841)
Q Consensus 486 ~~~~~~~~~~-P~glalD~~~~~LYw~d~~~-~~I~~~~~dG~~~~~i~~~~~~l~~P-~gla~~~~~lY~td~~~~~i~ 562 (841)
.......+.. +..++.- .++.|++..... ..++.+.+||.....+.... +..| ..|+-..+.||++|.. .+.
T Consensus 488 ~~~l~~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~~iyv~~~~--g~~ 562 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPSTVYVTDAR--AVL 562 (591)
T ss_pred cEEeecccCCccccceEe-cCCEEEEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCceEEEEcCC--ceE
Confidence 0000023333 4566654 356677764433 46999999998766533221 2223 3455555789999854 455
Q ss_pred EEe
Q psy14257 563 RAN 565 (841)
Q Consensus 563 ~~~ 565 (841)
+..
T Consensus 563 ~l~ 565 (591)
T PRK13616 563 QLP 565 (591)
T ss_pred Eec
Confidence 444
No 139
>KOG2397|consensus
Probab=91.49 E-value=0.18 Score=55.52 Aligned_cols=53 Identities=40% Similarity=0.601 Sum_probs=43.5
Q ss_pred cCCcCCCCCCCCCCCCCCCCCCCCCCCcccCCCC---eEecCCCCCCCCCCcccCCCCCCCc
Q psy14257 10 CDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL---RCIPLAWACDGQPDCGLNDTSDEDH 68 (841)
Q Consensus 10 Cdg~~dC~dgsde~~~~C~~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~dC~~~d~sde~~ 68 (841)
=|..-||.|||||- ....|..+.|.|.+.| .=||.+.+=||.-||= |||||..
T Consensus 60 NDd~CDC~DGsDEP----GtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCC--DgSDE~~ 115 (480)
T KOG2397|consen 60 NDDSCDCLDGSDEP----GTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCC--DGSDEYL 115 (480)
T ss_pred ccccccCCCCCCCC----ccccCCCCceeeeecCCCceeeechhccCcccccc--cCCCCcc
Confidence 36677899999995 3578999999996333 4689999999999999 9998864
No 140
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.92 E-value=20 Score=36.50 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=80.6
Q ss_pred ceEEEEecCCCcEEEEcc-CCceEEEEe-cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec-CCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLDQIEVAKL-SGQFRRTLI-AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS-MSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~-~G~~~~~l~-~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~-ldG~~~~~i~~~~~~ 489 (841)
++||+.+ ..+.|..++. +|+..-..- ...+..+ .++ ..+.||+.... ++|+..+ .+|.....+......
T Consensus 37 ~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~~---~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 37 GRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTSD---GSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEETT---SEEEEEETTTSCEEEEEEE-SSC
T ss_pred CEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccce---eeeEecccCCcceeeeecccccc
Confidence 7888874 5678888886 676433222 2222233 233 35788888743 4899998 466665553221100
Q ss_pred CCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcc--------eEEEEecCeEEEEeCCCCe
Q psy14257 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHP--------FAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 490 ~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P--------~gla~~~~~lY~td~~~~~ 560 (841)
...+..+...+++ ++++|.... .+.|..+++. |..+-...........+ ..+.+.++.+|++.....
T Consensus 109 ~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~- 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR- 184 (238)
T ss_dssp TCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-
T ss_pred ccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-
Confidence 1123344455555 678887775 6788999866 44333332211111111 223335689999886554
Q ss_pred EEEEeccCCc
Q psy14257 561 VIRANKWNGS 570 (841)
Q Consensus 561 i~~~~~~~g~ 570 (841)
+..++..+|+
T Consensus 185 ~~~~d~~tg~ 194 (238)
T PF13360_consen 185 VVAVDLATGE 194 (238)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCC
Confidence 6666776666
No 141
>KOG0286|consensus
Probab=90.90 E-value=23 Score=37.02 Aligned_cols=236 Identities=11% Similarity=0.085 Sum_probs=127.7
Q ss_pred CCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCC-CeEEEEEecC--CccEEEEeeeeecCCCcccc
Q psy14257 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL-NTVESVRVDG--SERTVSFNLEVLGSDSRVGI 400 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~-~~I~~~~ldG--~~~~~~~~~~~~~~~~~~~i 400 (841)
.+++|++..++.-.++....+.-+..|-...|+.|.++.|--.--.+ -+|+.++... ...++...+. +...-+
T Consensus 73 aSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~--gHtgyl-- 148 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELA--GHTGYL-- 148 (343)
T ss_pred eccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeec--Ccccee--
Confidence 45667777777666666666666667777777777655443222221 2344444221 1111110000 000000
Q ss_pred CCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc
Q psy14257 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR 480 (841)
Q Consensus 401 ~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~ 480 (841)
. ..-...+.-.+|-++..+.-.-+++.........+......+|++.|.++..|++-.-....+|+-++ +|.-+
T Consensus 149 -S----cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~ 222 (343)
T KOG0286|consen 149 -S----CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCV 222 (343)
T ss_pred -E----EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc-Cccee
Confidence 0 00011134445556666666777765555555556677888999999889999997654456676665 34555
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCC
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTN 559 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~ 559 (841)
+.+..+ -...+.+.+-| ++.-|.+-+.....+.+|+.....-.+++....+..-.++++ ..|+|.++-....
T Consensus 223 qtF~gh------esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 223 QTFEGH------ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred Eeeccc------ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 555432 22234555542 344455555566777777765433333333222222345666 4588888877777
Q ss_pred eEEEEeccCCcceEEEe
Q psy14257 560 SVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 560 ~i~~~~~~~g~~~~~i~ 576 (841)
.+...+...++...++.
T Consensus 296 ~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 296 TCNVWDTLKGERVGVLA 312 (343)
T ss_pred ceeEeeccccceEEEee
Confidence 77777766666665554
No 142
>PTZ00421 coronin; Provisional
Probab=90.68 E-value=38 Score=39.23 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=37.7
Q ss_pred EEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcc-eEEEEecCeEEEEeCCCCeEEEEeccCCcceEEEe
Q psy14257 499 LTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHP-FAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQ 576 (841)
Q Consensus 499 lalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P-~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~i~ 576 (841)
..+|+..+.||.+-.+.+.|..+++............ ...| .|+++.-.+. .|.....|.|+-|.+...+..|.
T Consensus 265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~--s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~~i~pis 339 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS--SVEPHKGLCMMPKWS--LDTRKCEIARFYALTYHSLYTIQ 339 (493)
T ss_pred EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc--CCCCCcceEeccccc--ccccceeeeEEEEecCCeEEEEE
Confidence 3467767777776655678888888754432222111 1122 4555533222 23334455555555544444443
No 143
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=90.67 E-value=8 Score=39.39 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=78.3
Q ss_pred EEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCce--EEEE----
Q psy14257 365 WCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQF--RRTL---- 438 (841)
Q Consensus 365 waD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~--~~~l---- 438 (841)
++..+..-+.+++|+|+....+-.-...+-+.+-|.+-.. .++| -.--+|..++.|.++.+++.. .+.+
T Consensus 71 Itt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG-~~id----iaaASdR~~~~i~~y~Idp~~~~L~sitD~n 145 (364)
T COG4247 71 ITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGG-QSID----IAAASDRQNDKIVFYKIDPNPQYLESITDSN 145 (364)
T ss_pred EEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCC-eEEE----EEecccccCCeEEEEEeCCCccceeeccCCC
Confidence 3444455577778888766654322222222222222110 0111 112234556778877777643 2222
Q ss_pred --ecCCCCCceeEEEcCC--CCeEEEEecCCCCCeEEEecC----CCCCcEEEEEecccCCCCC---CceeEEEeccCCE
Q psy14257 439 --IAGDMESPRAIALDPR--FGLLFWTDWDSKAPRIERCSM----SGEHRSVIVRVDLLTSRGA---WPNGLTLDYQLTR 507 (841)
Q Consensus 439 --~~~~l~~P~giavd~~--~g~Ly~td~~~~~~~I~r~~l----dG~~~~~i~~~~~~~~~~~---~P~glalD~~~~~ 507 (841)
.+.++..|.|+++... .|-+|+--.+ ..+.|..+.+ +|.-+..++. .++ .-.|+..|-+.+.
T Consensus 146 ~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR------~fk~~tQTEG~VaDdEtG~ 218 (364)
T COG4247 146 APYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVR------QFKIPTQTEGMVADDETGF 218 (364)
T ss_pred CccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeE------eeecCCcccceeeccccce
Confidence 2345678899998644 3434433332 2466777766 2333333332 222 3468999999999
Q ss_pred EEEEeCCCCeEEEEEcC
Q psy14257 508 IYWIDAKSDSIHTVTYD 524 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~d 524 (841)
||+++. .-.|+++..+
T Consensus 219 LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 219 LYIAEE-DVAIWKYEAE 234 (364)
T ss_pred EEEeec-cceeeecccC
Confidence 999986 4578887543
No 144
>KOG4289|consensus
Probab=90.55 E-value=0.24 Score=60.47 Aligned_cols=52 Identities=27% Similarity=0.690 Sum_probs=41.7
Q ss_pred ccCCCCCeEecC--CCCCCCCCCCCCCCCCccc------ccccccCCCCC--CCcccCC-CCcEEecCCC
Q psy14257 101 DCQDVLRTCIPK--ALVCDGEPACFNGEDEMFC------DEKQCLRSDCH--HDCYNTP-EGFMCVCPRD 159 (841)
Q Consensus 101 ~C~~~~~~Ci~~--~~~Cdg~~~C~~g~de~~C------~eC~~~~~~C~--~~C~~~~-g~~~C~C~~G 159 (841)
+|.+. +.|... .+.| .|.+|+.+++| ..| .++.|. ..|.+.. |+|.|.|+.|
T Consensus 1246 pC~nn-g~C~srEggYtC----eCrpg~tGehCEvs~~agrC--vpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1246 PCGNN-GRCRSREGGYTC----ECRPGFTGEHCEVSARAGRC--VPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCCCC-CceEEecCceeE----EecCCccccceeeecccCcc--ccceecCCCEEeecCCCceeccCCCc
Confidence 58777 889876 7889 99999998888 234 467775 3898865 8899999999
No 145
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=90.33 E-value=0.26 Score=33.62 Aligned_cols=24 Identities=38% Similarity=0.890 Sum_probs=20.2
Q ss_pred CCCC--CCcccCCCCcEEecCCCcee
Q psy14257 139 SDCH--HDCYNTPEGFMCVCPRDMYL 162 (841)
Q Consensus 139 ~~C~--~~C~~~~g~~~C~C~~Gy~l 162 (841)
..|. ..|.++.++|.|.|+.||..
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4565 58999999999999999974
No 146
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.33 E-value=36 Score=38.37 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=106.6
Q ss_pred CccceEEeeecCceeEEEeeecCCCC---CCCCCCEEEEccCCCccc-cccccCcCCC---ceEEEEccCCEEEEEeCC-
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPS---NSSDGGIEKAGMHGENRS-PLVTKNIQWP---SSLVIDYNQDILYWCDSH- 369 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~---~~~~~~I~~~~~dG~~~~-~l~~~~~~~P---~glavD~~~~~lYwaD~~- 369 (841)
.+.+-.+-|..+.-.+|.+.+..... .....+|++..+...... .++-..-..+ -++.++.+++.|++.-..
T Consensus 169 ~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 169 NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG 248 (414)
T ss_dssp EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS
T ss_pred ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc
Confidence 34333366766644455555544211 011346777777544333 2333322333 377888888888875442
Q ss_pred -C-CeEEEEEecCC-----ccEEEEeeeeecCCCccccCCCCCCccccccceEEE-Eec--CCCcEEEEccCCce----E
Q psy14257 370 -L-NTVESVRVDGS-----ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYW-VES--NLDQIEVAKLSGQF----R 435 (841)
Q Consensus 370 -~-~~I~~~~ldG~-----~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~-tD~--~~~~I~v~~~~G~~----~ 435 (841)
. ..|+.++++.. ..+.+.... +.. .-.+++.++.+|+ |+. .+++|..++++... .
T Consensus 249 ~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~~-------~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~ 317 (414)
T PF02897_consen 249 TSESEVYLLDLDDGGSPDAKPKLLSPRE----DGV-------EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWW 317 (414)
T ss_dssp SSEEEEEEEECCCTTTSS-SEEEEEESS----SS--------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEE
T ss_pred ccCCeEEEEeccccCCCcCCcEEEeCCC----Cce-------EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccce
Confidence 3 45788888764 223322100 000 0124455688886 443 35688888887543 3
Q ss_pred EEEecCCC-CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 436 RTLIAGDM-ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 436 ~~l~~~~l-~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
.+++...- ....++.+. +++|++........+|...+++ +.....+.. .....-.++.-++.+..+++.-.
T Consensus 318 ~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~-----p~~g~v~~~~~~~~~~~~~~~~s 390 (414)
T PF02897_consen 318 TVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPL-----PEAGSVSGVSGDFDSDELRFSYS 390 (414)
T ss_dssp EEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEES-----SSSSEEEEEES-TT-SEEEEEEE
T ss_pred eEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecC-----CcceEEeccCCCCCCCEEEEEEe
Confidence 34444321 235566664 5788888755446789999988 433333321 12222234444555555555432
Q ss_pred C---CCeEEEEEcCCCeeEEE
Q psy14257 514 K---SDSIHTVTYDGKDHHVV 531 (841)
Q Consensus 514 ~---~~~I~~~~~dG~~~~~i 531 (841)
. -..|+.+++.....+.+
T Consensus 391 s~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 391 SFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ETTEEEEEEEEETTTTCEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEE
Confidence 1 13566666655544433
No 147
>KOG0268|consensus
Probab=90.17 E-value=5.5 Score=42.49 Aligned_cols=216 Identities=13% Similarity=0.164 Sum_probs=120.4
Q ss_pred CCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeee-cCCC---ccc
Q psy14257 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL-GSDS---RVG 399 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~-~~~~---~~~ 399 (841)
.+.+|.|..++|.-..-...+...-+.-.||.++. +..+++.|-+ +|....++|....+++.-..+ +-+. .--
T Consensus 85 Gs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDK--tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 85 GSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDK--TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred cccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCc--ceeeeeccCCcceeeecccccccccccccccc
Confidence 34577888888876655555556667788999997 6666666654 455555555444443221111 0000 000
Q ss_pred cCCCC------------CC-cccc------------ccceEEEEecCCCcEEEEccCCc-eEEEEecCCCCCceeEEEcC
Q psy14257 400 IPNCR------------PE-DNLW------------IGKNLYWVESNLDQIEVAKLSGQ-FRRTLIAGDMESPRAIALDP 453 (841)
Q Consensus 400 i~~~~------------~~-avdw------------~~~~LY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~giavd~ 453 (841)
.++|+ |+ .+.| +.-.|..+-...+.|..+|+.-. -.+.++. . .++++|+.+|
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~-mRTN~IswnP 239 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-T-MRTNTICWNP 239 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-e-ccccceecCc
Confidence 00111 10 1112 22334444444556777766432 2222221 1 4789999999
Q ss_pred CCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc
Q psy14257 454 RFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS 533 (841)
Q Consensus 454 ~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~ 533 (841)
.++.|++... ...+|..+|.--.+..-+.. ........+.+. ..|.=|++-++...|..+..+...-+.++.
T Consensus 240 -eafnF~~a~E--D~nlY~~DmR~l~~p~~v~~----dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 240 -EAFNFVAANE--DHNLYTYDMRNLSRPLNVHK----DHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred -cccceeeccc--cccceehhhhhhcccchhhc----ccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhh
Confidence 7999988754 78899999864333222210 111122223333 256777888888899999888765555554
Q ss_pred CCCCCCcceEEEEecCeEEE
Q psy14257 534 NHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 534 ~~~~l~~P~gla~~~~~lY~ 553 (841)
. ...++.+++...-+.-|+
T Consensus 312 t-kRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 312 T-KRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred H-hhhheeeEEEEeccccEE
Confidence 3 246788888886554444
No 148
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.13 E-value=0.29 Score=33.96 Aligned_cols=23 Identities=30% Similarity=0.813 Sum_probs=19.2
Q ss_pred CCCC--CCcccCCCCcEEecCCCce
Q psy14257 139 SDCH--HDCYNTPEGFMCVCPRDMY 161 (841)
Q Consensus 139 ~~C~--~~C~~~~g~~~C~C~~Gy~ 161 (841)
..|. +.|.++.++|.|.|++||.
T Consensus 9 ~~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 9 NPCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc
Confidence 3563 4799999999999999996
No 149
>KOG3509|consensus
Probab=89.15 E-value=0.87 Score=55.26 Aligned_cols=65 Identities=32% Similarity=0.694 Sum_probs=55.0
Q ss_pred eccCccCcCCcCCCCCCCCCCCCCCC--CCCCCCCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCcc
Q psy14257 3 CIIAYWKCDGDEDCKDGSDELAEHCQ--DRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69 (841)
Q Consensus 3 Ci~~~~~Cdg~~dC~dgsde~~~~C~--~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C 69 (841)
|....|.||...+|.+++++..+++. ...|.+.+++|.+..+|.+.+..|+|.++|. |+++|..|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~--~~~~~~~~ 110 (964)
T KOG3509|consen 44 CVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCK--DGSDEVGC 110 (964)
T ss_pred ccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCC--ccchhccc
Confidence 45567899999999999988733332 3668999999997779999999999999999 99999886
No 150
>KOG0994|consensus
Probab=88.79 E-value=1.3 Score=53.40 Aligned_cols=78 Identities=21% Similarity=0.522 Sum_probs=42.2
Q ss_pred CccCCCCCCC----CC-CCCCCCCcccCCCCCeEecC-----CCCCCCCCCCCCCCC-------CcccccccccCCCCCC
Q psy14257 81 NCTHSGNRTI----SA-PACEPHEFDCQDVLRTCIPK-----ALVCDGEPACFNGED-------EMFCDEKQCLRSDCHH 143 (841)
Q Consensus 81 ~C~~c~~~~~----c~-~~C~~~~~~C~~~~~~Ci~~-----~~~Cdg~~~C~~g~d-------e~~C~eC~~~~~~C~~ 143 (841)
.|..|.++.+ |. -.|..+.-.|...+|.||.- .+.|| .|.+||= +..|..|.+..++-+.
T Consensus 842 qCnqCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~Cd---rCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg 918 (1758)
T KOG0994|consen 842 QCNQCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCD---RCLDGYYGDPRLGSGIGCRPCPCPDGPASG 918 (1758)
T ss_pred hccccCCCccCCCcCccccccCcccccCccccccccccccccccchh---hhhccccCCcccCCCCCCCCCCCCCCCccc
Confidence 4555555543 31 23444445565555666653 56675 6888872 2337666554433221
Q ss_pred -----CcccCC--CCcEEecCCCce
Q psy14257 144 -----DCYNTP--EGFMCVCPRDMY 161 (841)
Q Consensus 144 -----~C~~~~--g~~~C~C~~Gy~ 161 (841)
.|+..+ ....|.|.+||.
T Consensus 919 ~~~A~sC~~d~~t~~ivC~C~~GY~ 943 (1758)
T KOG0994|consen 919 RQHADSCYLDTRTQQIVCHCQEGYS 943 (1758)
T ss_pred hhccccccccccccceeeecccCcc
Confidence 454332 345788888886
No 151
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=88.76 E-value=0.41 Score=33.32 Aligned_cols=29 Identities=48% Similarity=1.114 Sum_probs=19.7
Q ss_pred CCccC--ceeecCCCCceEEeecCCeeecCCCCce
Q psy14257 179 GTCSQ--DCEPSVSNNSYKCTCHAGYELEPDMFTC 211 (841)
Q Consensus 179 ~~Cs~--~C~~~~~~g~~~C~C~~G~~l~~d~~~C 211 (841)
+.|.. .|.++ .++|.|.|.+||.. |+..|
T Consensus 6 ~~C~~nA~C~~~--~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 6 GGCHPNATCTNT--GGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGS-TTCEEEE---TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCcEeecC--CCCEEeECCCCCcc--CCcCC
Confidence 45533 78898 89999999999984 45544
No 152
>KOG4441|consensus
Probab=88.47 E-value=32 Score=40.66 Aligned_cols=179 Identities=12% Similarity=0.052 Sum_probs=107.1
Q ss_pred cCCEEEEEeCCC------CeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-----CcEEE
Q psy14257 359 NQDILYWCDSHL------NTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-----DQIEV 427 (841)
Q Consensus 359 ~~~~lYwaD~~~------~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-----~~I~v 427 (841)
.++.||++-..+ ..++++++....-..+.....- .. ..++...+|.||+.-... ..|++
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~--------~~~v~~l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RS--------DFGVAVLDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc--cc--------cceeEEECCEEEEEeccccccccccEEE
Confidence 468999986544 5677777776654433221110 11 123444569999886543 36888
Q ss_pred EccCCceEEEEecCCCCCc-eeEEEcCCCCeEEEEecCC----CCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe
Q psy14257 428 AKLSGQFRRTLIAGDMESP-RAIALDPRFGLLFWTDWDS----KAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P-~giavd~~~g~Ly~td~~~----~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD 502 (841)
++.....-..+.. +..+ .+.++-..+|+||..-... .-..+++++..-...+.+... ..-..-.|+++
T Consensus 401 YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M----~~~R~~~g~a~- 473 (571)
T KOG4441|consen 401 YDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM----NTRRSGFGVAV- 473 (571)
T ss_pred ecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc----ccccccceEEE-
Confidence 8887765444332 2222 2444444689999985321 125788888876655555431 11122234554
Q ss_pred ccCCEEEEEeCC-----CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 503 YQLTRIYWIDAK-----SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 503 ~~~~~LYw~d~~-----~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
.+++||++-.. ...|+++++....-..+.... .-....|+++.++.||+.-.
T Consensus 474 -~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 474 -LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccccccEEEECCEEEEEec
Confidence 58999997543 346899999887776663222 12344688999999999753
No 153
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.20 E-value=49 Score=37.05 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~ 534 (841)
++.||+.... +.++..++.... ++-. ..+..+..++++ +++||+.+. .+.|..++...... +-..
T Consensus 256 ~~~vy~~~~~---g~l~ald~~tG~--~~W~-----~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~--~W~~ 320 (394)
T PRK11138 256 GGVVYALAYN---GNLVALDLRSGQ--IVWK-----REYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVE--LWSQ 320 (394)
T ss_pred CCEEEEEEcC---CeEEEEECCCCC--EEEe-----ecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcE--EEcc
Confidence 5789988753 678888774222 1222 123334445554 689999875 57899999864422 2111
Q ss_pred CCCC-CcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 535 HDSL-THPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 535 ~~~l-~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
.... ....+.++.+++||+.+. .+.|+.++..+|+..
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDS-EGYLHWINREDGRFV 358 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeC-CCEEEEEECCCCCEE
Confidence 1000 111234567899999875 467888888887643
No 154
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.10 E-value=47 Score=36.80 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=60.8
Q ss_pred CCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEc
Q psy14257 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLS 533 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~ 533 (841)
++.+|.+... +.++..++.... .+.. .....+..++++ +++||+.+. .+.|..++.+ |..+-....
T Consensus 241 ~~~vy~~~~~---g~l~a~d~~tG~--~~W~-----~~~~~~~~p~~~--~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSYQ---GRVAALDLRSGR--VLWK-----RDASSYQGPAVD--DNRLYVTDA-DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEcC---CEEEEEECCCCc--EEEe-----eccCCccCceEe--CCEEEEECC-CCeEEEEECCCCcEEEcccc
Confidence 5789998754 678888874222 2222 112234455554 689998874 6789999985 432211101
Q ss_pred -CCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 534 -NHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 534 -~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
...... ..++.+++||+.+ .++.|+.++..+|+...
T Consensus 308 ~~~~~~s---sp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 308 LKYRQLT---APAVVGGYLVVGD-FEGYLHWLSREDGSFVA 344 (377)
T ss_pred ccCCccc---cCEEECCEEEEEe-CCCEEEEEECCCCCEEE
Confidence 011112 2345788999987 45788888887776554
No 155
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.07 E-value=50 Score=36.99 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=71.2
Q ss_pred cceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 412 GKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
++.||++.. .+.+...++. |+.+ -...+..+..++++ ++.||+.+. .++|+.++...... +......
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~---W~~~~~~~~~~~~~--~~~vy~~~~---~g~l~ald~~tG~~--~W~~~~~- 323 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIV---WKREYGSVNDFAVD--GGRIYLVDQ---NDRVYALDTRGGVE--LWSQSDL- 323 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEE---EeecCCCccCcEEE--CCEEEEEcC---CCeEEEEECCCCcE--EEccccc-
Confidence 478888764 4677777764 4322 11123334455554 579999874 46888888753221 1110000
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEE
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~ 564 (841)
... .....++ .+++||+.+. .+.|+.++.+ |..+...-.... .......+.+++||+... .+.|+.+
T Consensus 324 ~~~-~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~~~~~l~v~t~-~G~l~~~ 391 (394)
T PRK11138 324 LHR-LLTAPVL--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSS--GFLSEPVVADDKLLIQAR-DGTVYAI 391 (394)
T ss_pred CCC-cccCCEE--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCC--cceeCCEEECCEEEEEeC-CceEEEE
Confidence 011 1122333 2689998875 5788888874 433322211111 111233467899999965 4555544
No 156
>smart00181 EGF Epidermal growth factor-like domain.
Probab=87.83 E-value=0.52 Score=32.29 Aligned_cols=25 Identities=40% Similarity=1.018 Sum_probs=20.8
Q ss_pred CCccC-ceeecCCCCceEEeecCCeeec
Q psy14257 179 GTCSQ-DCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 179 ~~Cs~-~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
..|.+ .|.+. .++|.|.|++||.+.
T Consensus 6 ~~C~~~~C~~~--~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINT--PGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECC--CCCeEeECCCCCccC
Confidence 45666 89988 899999999999763
No 157
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.47 E-value=1.9 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=28.7
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALD 452 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd 452 (841)
+.||+++...+.|.++++.......-+.. -..|++|+++
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 78999999999999998854433333333 3689999874
No 158
>KOG1217|consensus
Probab=86.65 E-value=3.4 Score=47.44 Aligned_cols=101 Identities=27% Similarity=0.465 Sum_probs=68.1
Q ss_pred CcccCCCCCeEecC----CCCCCCCCCCCCCCCCccc----ccccccCCCCCCCccc-CCCCcEEecCCCceec--CCCC
Q psy14257 99 EFDCQDVLRTCIPK----ALVCDGEPACFNGEDEMFC----DEKQCLRSDCHHDCYN-TPEGFMCVCPRDMYLQ--PDLI 167 (841)
Q Consensus 99 ~~~C~~~~~~Ci~~----~~~Cdg~~~C~~g~de~~C----~eC~~~~~~C~~~C~~-~~g~~~C~C~~Gy~l~--~d~~ 167 (841)
...|.++ ..|... .+.| .|..++....| ++|..........|.+ +.++|.|.|+.+|.+. .++.
T Consensus 321 ~~~c~~g-~~C~~~~~~~~~~C----~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~ 395 (487)
T KOG1217|consen 321 GGPCANG-GTCNTLGSFGGFRC----ACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGV 395 (487)
T ss_pred CCcCCCC-cccccCCCCCCCCc----CCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccc
Confidence 3446664 566221 4457 78888777778 2677543333558888 7999999999999863 5778
Q ss_pred ccccccccCCCCCccCceeecCCCCceEEeecCCeeecCCCCceEeC
Q psy14257 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214 (841)
Q Consensus 168 ~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~ 214 (841)
.|.+.++|.. ...|.+. .+++.|. .. + ..... .|.+.
T Consensus 396 ~~~~~~~c~~----~~~c~~~--~~~~~c~-~~-~-~~~~~-~~~~~ 432 (487)
T KOG1217|consen 396 GCEDIDECSG----CGDCVNG--PGGGACT-PP-G-LVSPG-TCDDI 432 (487)
T ss_pred cccccccccC----Ccceecc--CCCCccc-cC-c-ccCCc-ceecc
Confidence 8888888854 3356777 7888888 76 4 33323 55555
No 159
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.19 E-value=48 Score=34.88 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred ceEEEEecCCCcEEEEccCCce-EEEEecCCCCCceeE---EEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQF-RRTLIAGDMESPRAI---ALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~gi---avd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~ 488 (841)
++.|.++...+ +...+.++.. ..++..-....|.++ .|. ..+.|+.|....-+.|-..+.-+.....-..
T Consensus 224 nr~y~vvy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~ss~~--- 297 (370)
T COG5276 224 NRAYLVVYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSSSLD--- 297 (370)
T ss_pred CeeEEEEcccc-eEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhcccc---
Confidence 77888886644 4445555544 333333344567666 553 5699999965323344444433322211111
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE-cCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeE
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT-YDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSV 561 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~-~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i 561 (841)
.......||.+ .++.+|++|...+.|.-+. +.-.+. ..+..++..-..+.+....+|.+||..+..
T Consensus 298 --t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~---~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 298 --TAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDK---RPGRPTIGQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred --CCCccccceEE--ecCeeEeccCCceEEEeCCChhhccc---ccCcceEeeecceEEEeeEEEEeecCCCEE
Confidence 22234567776 4789999997655443221 111000 001011122345566556999999876543
No 160
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=86.18 E-value=0.2 Score=48.14 Aligned_cols=98 Identities=27% Similarity=0.652 Sum_probs=55.6
Q ss_pred ccCCCCCeEecC-------CCCCCCCCCCCCCCC--Cccc--ccccccCCCCC-CCcccCC---CCcEEecCCCceecCC
Q psy14257 101 DCQDVLRTCIPK-------ALVCDGEPACFNGED--EMFC--DEKQCLRSDCH-HDCYNTP---EGFMCVCPRDMYLQPD 165 (841)
Q Consensus 101 ~C~~~~~~Ci~~-------~~~Cdg~~~C~~g~d--e~~C--~eC~~~~~~C~-~~C~~~~---g~~~C~C~~Gy~l~~d 165 (841)
.|.+. ..|+.. .+.| +|.+||. +..| ++|. +..|. .+|+-.+ ....|+|.-|+. ..|
T Consensus 51 ~Cgdy-a~C~~~~~~~~~~~~~C----~C~~gY~~~~~vCvp~~C~--~~~Cg~GKCI~d~~~~~~~~CSC~IGkV-~~d 122 (197)
T PF06247_consen 51 PCGDY-AKCINQANKGEERAYKC----DCINGYILKQGVCVPNKCN--NKDCGSGKCILDPDNPNNPTCSCNIGKV-PDD 122 (197)
T ss_dssp EEETT-EEEEE-SSTTSSTSEEE----EE-TTEEESSSSEEEGGGS--S---TTEEEEEEEGGGSEEEEEE-TEEE-TTT
T ss_pred cccch-hhhhcCCCcccceeEEE----ecccCceeeCCeEchhhcC--ceecCCCeEEecCCCCCCceeEeeeceE-ecc
Confidence 46665 677664 4568 8999995 3347 5565 34553 3676433 345999999999 456
Q ss_pred CCcccc--ccccCCCCCc--cCceeecCCCCceEEeecCCeeecCCCCc
Q psy14257 166 LITCSY--LHPCEAWGTC--SQDCEPSVSNNSYKCTCHAGYELEPDMFT 210 (841)
Q Consensus 166 ~~~C~~--~~eC~~~~~C--s~~C~~~~~~g~~~C~C~~G~~l~~d~~~ 210 (841)
...|.. ..+|+. -| ...|... .+-|+|.|.+|+.....+..
T Consensus 123 n~kCtk~G~T~C~L--KCk~nE~CK~~--~~~Y~C~~~~~~~~~~~~~~ 167 (197)
T PF06247_consen 123 NKKCTKTGETKCSL--KCKENEECKLV--DGYYKCVCKEGFPGDGEGEG 167 (197)
T ss_dssp TTESEEEE----------TTTEEEEEE--TTEEEEEE-TT-EEETTT--
T ss_pred CCcccCCCccceee--ecCCCcceeee--CcEEEeecCCCCCCCCCccc
Confidence 677764 334532 23 2378888 88999999999988765543
No 161
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=86.08 E-value=0.79 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCccccccCCCCceeeeCCCCceeecC
Q psy14257 600 GNCSHLCLIGMNGTYKCQCPHVMKLMSD 627 (841)
Q Consensus 600 g~Cs~lC~~~~~~~~~C~Cp~g~~l~~d 627 (841)
..|.+.|-++.. ..|.||+||.|..+
T Consensus 6 t~CpA~CDpn~~--~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 6 TECPADCDPNSP--GQCFCPEGYILDEG 31 (34)
T ss_pred ccCCCccCCCCC--CceeCCCceEecCC
Confidence 668888887654 48999999998764
No 162
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=85.89 E-value=0.34 Score=32.76 Aligned_cols=22 Identities=32% Similarity=1.038 Sum_probs=19.2
Q ss_pred CCCC--CcccCC-CCcEEecCCCce
Q psy14257 140 DCHH--DCYNTP-EGFMCVCPRDMY 161 (841)
Q Consensus 140 ~C~~--~C~~~~-g~~~C~C~~Gy~ 161 (841)
+|.+ .|++.. ++|.|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 6765 889888 999999999997
No 163
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.62 E-value=67 Score=36.00 Aligned_cols=78 Identities=13% Similarity=0.115 Sum_probs=37.7
Q ss_pred ceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee--CCCCCcceeEEeec
Q psy14257 671 PNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD--AGISHPSGLAIDWI 748 (841)
Q Consensus 671 ~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~p~glAvD~~ 748 (841)
++.|......+.||++.-..+.|+..++.-...-.|+..|+..=.- .+ .....+. .-.+.|+=|.+.|-
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~---~~------~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSI---RK------GDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTT---T-------B--TTS------S----EEE-TT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEe---cc------CCCccccccccCCCCCeEEEccC
Confidence 5677788889999999999999999998765523333222211000 00 0000000 11246888888899
Q ss_pred CCcEEEEec
Q psy14257 749 AQNMFIAVS 757 (841)
Q Consensus 749 ~~~LYw~~~ 757 (841)
+++||||+|
T Consensus 385 GkRlYvTnS 393 (461)
T PF05694_consen 385 GKRLYVTNS 393 (461)
T ss_dssp SSEEEEE--
T ss_pred CeEEEEEee
Confidence 999999954
No 164
>KOG0994|consensus
Probab=85.45 E-value=3.2 Score=50.35 Aligned_cols=86 Identities=29% Similarity=0.647 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCCCCcc-cccccccC--CCCCC------CcccCCCCcEE-ecCCCceecC---CCCccccccccCCCC
Q psy14257 113 ALVCDGEPACFNGEDEMF-CDEKQCLR--SDCHH------DCYNTPEGFMC-VCPRDMYLQP---DLITCSYLHPCEAWG 179 (841)
Q Consensus 113 ~~~Cdg~~~C~~g~de~~-C~eC~~~~--~~C~~------~C~~~~g~~~C-~C~~Gy~l~~---d~~~C~~~~eC~~~~ 179 (841)
...|| .|.+|+.+.+ |..|+++. ..|.. .|.+..+|+.| +|..||...| .+..|..- +|. .+
T Consensus 840 grqCn---qCqpG~WgFPeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPC-pCP-~g 914 (1758)
T KOG0994|consen 840 GRQCN---QCQPGYWGFPECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPC-PCP-DG 914 (1758)
T ss_pred hhhcc---ccCCCccCCCcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCC-CCC-CC
Confidence 34575 7999988766 65555432 24432 57778889999 6999998553 44555532 231 12
Q ss_pred CccC-----cee--ecCCCCceEEeecCCeeec
Q psy14257 180 TCSQ-----DCE--PSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 180 ~Cs~-----~C~--~~~~~g~~~C~C~~G~~l~ 205 (841)
+-++ .|. +. .....|.|.+||...
T Consensus 915 p~Sg~~~A~sC~~d~~--t~~ivC~C~~GY~G~ 945 (1758)
T KOG0994|consen 915 PASGRQHADSCYLDTR--TQQIVCHCQEGYSGS 945 (1758)
T ss_pred Cccchhcccccccccc--ccceeeecccCcccc
Confidence 2111 221 22 345678888888743
No 165
>KOG0268|consensus
Probab=85.40 E-value=15 Score=39.27 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=83.9
Q ss_pred ceeEEee--cCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeee
Q psy14257 636 SQFIIFS--RPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713 (841)
Q Consensus 636 ~~~l~~~--~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 713 (841)
+.+||.+ .+..|..+++....+..-+. ......+|.++| +...|.+-.+...+|..++..-.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi----~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~----------- 262 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVI----LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS----------- 262 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceee----eeccccceecCc-cccceeeccccccceehhhhhhc-----------
Confidence 4445443 34567777775543322111 113456899999 89999998888999887765422
Q ss_pred ecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEc-CCCCCCCcCCCce
Q psy14257 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILS-NESNDTSTLSKIS 792 (841)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~-~~~~~~~~l~~p~ 792 (841)
+| ..+-......+..+++.+.+ .=|++ ..-..+|+.+..+..+.+-+.. . .|.+..
T Consensus 263 --~p------------~~v~~dhvsAV~dVdfsptG-~Efvs--gsyDksIRIf~~~~~~SRdiYhtk------RMq~V~ 319 (433)
T KOG0268|consen 263 --RP------------LNVHKDHVSAVMDVDFSPTG-QEFVS--GSYDKSIRIFPVNHGHSRDIYHTK------RMQHVF 319 (433)
T ss_pred --cc------------chhhcccceeEEEeccCCCc-chhcc--ccccceEEEeecCCCcchhhhhHh------hhheee
Confidence 01 11122233445667777765 56777 4567889999998776555543 2 277777
Q ss_pred EEEEeCCCCeEEEEecCCCcceEEEEe
Q psy14257 793 SIAVWPVKGKMFWSNVTKQVVTIEMAF 819 (841)
Q Consensus 793 ~iavd~~~g~lyw~d~~~~~~~I~~~~ 819 (841)
++.-.-...|++=-....+ .|+++++
T Consensus 320 ~Vk~S~Dskyi~SGSdd~n-vRlWka~ 345 (433)
T KOG0268|consen 320 CVKYSMDSKYIISGSDDGN-VRLWKAK 345 (433)
T ss_pred EEEEeccccEEEecCCCcc-eeeeecc
Confidence 7776655445442221111 4555554
No 166
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=85.06 E-value=66 Score=35.43 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=55.1
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEe-ccCCEEEEEeCCCC--eEEEEEcCCCeeEEEEcCCCCCCcceE
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD-YQLTRIYWIDAKSD--SIHTVTYDGKDHHVVLSNHDSLTHPFA 543 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD-~~~~~LYw~d~~~~--~I~~~~~dG~~~~~i~~~~~~l~~P~g 543 (841)
...|..++......+++... ....-+.....+.+- ..+..++|.-...+ .|+.++.+|...+.+-.+.-.+....+
T Consensus 209 ~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~ 287 (353)
T PF00930_consen 209 RLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILG 287 (353)
T ss_dssp EEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEE
T ss_pred EEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccce
Confidence 34566666644333433332 111223333344432 45566666554444 889999999886654433322223334
Q ss_pred EEEecCeEEEEeCC----CCeEEEEeccCCcceE
Q psy14257 544 IALFENHVYWTDWR----TNSVIRANKWNGSDVT 573 (841)
Q Consensus 544 la~~~~~lY~td~~----~~~i~~~~~~~g~~~~ 573 (841)
+.-.++.||++-.. ...|++++...+...+
T Consensus 288 ~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 288 WDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 44445789988655 3467777765233333
No 167
>PHA02713 hypothetical protein; Provisional
Probab=84.78 E-value=77 Score=37.43 Aligned_cols=179 Identities=10% Similarity=0.082 Sum_probs=91.5
Q ss_pred cCCEEEEEeCC------CCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCC-----CcEEE
Q psy14257 359 NQDILYWCDSH------LNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNL-----DQIEV 427 (841)
Q Consensus 359 ~~~~lYwaD~~------~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~-----~~I~v 427 (841)
.++.||++-.. ...++++++....-..+.. .+.+.. ..++...+++||+.-... ..+++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-------m~~~R~---~~~~~~~~g~IYviGG~~~~~~~~sve~ 371 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-------MIKNRC---RFSLAVIDDTIYAIGGQNGTNVERTIEC 371 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-------Ccchhh---ceeEEEECCEEEEECCcCCCCCCceEEE
Confidence 46899998542 2346666665543222211 110000 012333458999986542 35778
Q ss_pred EccCCceEEEEecCCCCCce---eEEEcCCCCeEEEEecCCC---------------------CCeEEEecCCCCCcEEE
Q psy14257 428 AKLSGQFRRTLIAGDMESPR---AIALDPRFGLLFWTDWDSK---------------------APRIERCSMSGEHRSVI 483 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P~---giavd~~~g~Ly~td~~~~---------------------~~~I~r~~ldG~~~~~i 483 (841)
+++....-..+ ..+..|+ ++++ .+|.||+.-.... ...+++.++.-...+.+
T Consensus 372 Ydp~~~~W~~~--~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 372 YTMGDDKWKML--PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred EECCCCeEEEC--CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 88765433322 1333333 2232 3689998742110 24577777754433333
Q ss_pred EEecccCCCCCCceeEEEeccCCEEEEEeCCC------CeEEEEEcCC-CeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 484 VRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS------DSIHTVTYDG-KDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 484 ~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~------~~I~~~~~dG-~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
... ..-....++++ .+++||+.-... ..++++|++. ..-+.+..-.. -..-.|+++.+|+||+.-.
T Consensus 448 ~~m----~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~~~~~iyv~Gg 520 (557)
T PHA02713 448 PNF----WTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTILHDNTIMMLHC 520 (557)
T ss_pred CCC----CcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEEECCEEEEEee
Confidence 221 01111224443 368999985422 3578899886 33333322111 1123688889999999754
Q ss_pred CC
Q psy14257 557 RT 558 (841)
Q Consensus 557 ~~ 558 (841)
..
T Consensus 521 ~~ 522 (557)
T PHA02713 521 YE 522 (557)
T ss_pred ec
Confidence 33
No 168
>KOG0273|consensus
Probab=84.46 E-value=74 Score=35.52 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=52.4
Q ss_pred CccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG 477 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG 477 (841)
++|||.+..=|.+-...+.|.|+.++++....-+.+.-....+|-.+|. |.|.-+-.....-+|+...-++
T Consensus 322 lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 322 LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc
Confidence 5899999999999988899999999887654333335567789999986 6666665554466777755443
No 169
>KOG2397|consensus
Probab=84.19 E-value=0.93 Score=50.17 Aligned_cols=70 Identities=34% Similarity=0.562 Sum_probs=50.2
Q ss_pred CCCcccCCCCeEecCCCCCCCCCCcccCCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCCCCCCcccCCCCC---eEe
Q psy14257 34 ESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLR---TCI 110 (841)
Q Consensus 34 ~~~~~C~~~~~Ci~~~~~Cdg~~dC~~~d~sde~~C~~dC~~~~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~---~Ci 110 (841)
...|+|.+...=|+...+=|..-||. |||||-+ ...|+.+.|.|.+. | .=|
T Consensus 42 s~~~~CLdgs~~i~f~qlNDd~CDC~--DGsDEPG-----------------------tsACpngkF~C~N~-G~~p~~i 95 (480)
T KOG2397|consen 42 SSMFKCLDGSKTISFSQLNDDSCDCL--DGSDEPG-----------------------TSACPNGKFYCVNQ-GHQPKYI 95 (480)
T ss_pred ccceeeccCCcccCHHHhccccccCC--CCCCCCc-----------------------cccCCCCceeeeec-CCCceee
Confidence 34788886677788888888888888 7777732 13466778888874 4 345
Q ss_pred cCCCCCCCCCCCCCCCCCc
Q psy14257 111 PKALVCDGEPACFNGEDEM 129 (841)
Q Consensus 111 ~~~~~Cdg~~~C~~g~de~ 129 (841)
+.+.+=||..||=+|+||.
T Consensus 96 ~ssrV~DGICDCCDgSDE~ 114 (480)
T KOG2397|consen 96 PSSRVNDGICDCCDGSDEY 114 (480)
T ss_pred echhccCcccccccCCCCc
Confidence 6666677777999999875
No 170
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.17 E-value=4.9 Score=28.51 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=28.1
Q ss_pred cCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE
Q psy14257 504 QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546 (841)
Q Consensus 504 ~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~ 546 (841)
.+++||+++...+.|..+++.......-+.. ..+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v---g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV---GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC---CCCCceEEe
Confidence 5789999999999999999854433222222 357888875
No 171
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.46 E-value=42 Score=37.25 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCCCeEEEecC-CCCCcEEEEEecccCCC-CCCceeEEEeccCCEEEEEeCCCCeEEEEEcC-CCeeEEE
Q psy14257 455 FGLLFWTDWDSKAPRIERCSM-SGEHRSVIVRVDLLTSR-GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD-GKDHHVV 531 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~~~~~~~~-~~~P~glalD~~~~~LYw~d~~~~~I~~~~~d-G~~~~~i 531 (841)
+|.||+.++. .+++..+. +|+..-.... .. +.+.....+ .++.+|+.. ..+.+..++.+ |..+=..
T Consensus 111 ~G~i~~g~~~---g~~y~ld~~~G~~~W~~~~-----~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGKIYVGSWD---GKLYALDASTGTLVWSRNV-----GGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCeEEEeccc---ceEEEEECCCCcEEEEEec-----CCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence 5778888875 37777777 5655444332 12 112222222 357777764 35678888877 6554332
Q ss_pred EcCC-CCCCcceEEEEecCeEEEEeCC-CCeEEEEeccCCcce
Q psy14257 532 LSNH-DSLTHPFAIALFENHVYWTDWR-TNSVIRANKWNGSDV 572 (841)
Q Consensus 532 ~~~~-~~l~~P~gla~~~~~lY~td~~-~~~i~~~~~~~g~~~ 572 (841)
-... ..+......++.++.+|++... +..+...+..+|...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 180 ETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred ecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 2211 0122222333778899998653 446777777777644
No 172
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.21 E-value=58 Score=36.43 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=36.6
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEEEEEecccC-------------CCCCCceeEEEeccCCEEEE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSVIVRVDLLT-------------SRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~i~~~~~~~-------------~~~~~P~glalD~~~~~LYw 510 (841)
-|..|.+..+.++||++.|. .+.|..+++... +.+.+.+..+.. .--..|+-|.+..+++||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 35788899999999999999 789999998554 333333321110 01135788888888999999
Q ss_pred EeC
Q psy14257 511 IDA 513 (841)
Q Consensus 511 ~d~ 513 (841)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 975
No 173
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=82.90 E-value=1.3 Score=30.62 Aligned_cols=31 Identities=29% Similarity=0.832 Sum_probs=22.4
Q ss_pred ccccCCCCCc--cCceeecCCCCceEEeecCCeee
Q psy14257 172 LHPCEAWGTC--SQDCEPSVSNNSYKCTCHAGYEL 204 (841)
Q Consensus 172 ~~eC~~~~~C--s~~C~~~~~~g~~~C~C~~G~~l 204 (841)
+++|.....| .+.|.+. .++|.|.|..||..
T Consensus 2 ~~~C~~~~~C~~~~~C~~~--~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNT--VGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECC--CCCeEeECCCCCcC
Confidence 3456432456 3578888 89999999999864
No 174
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=82.36 E-value=92 Score=35.04 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=71.9
Q ss_pred cEEEEccCCceE--EEEecCCCCCc---eeEEEcCCCCeEEEEecCCCC-CeEEEecCCCC-----CcEEEEEecccCCC
Q psy14257 424 QIEVAKLSGQFR--RTLIAGDMESP---RAIALDPRFGLLFWTDWDSKA-PRIERCSMSGE-----HRSVIVRVDLLTSR 492 (841)
Q Consensus 424 ~I~v~~~~G~~~--~~l~~~~l~~P---~giavd~~~g~Ly~td~~~~~-~~I~r~~ldG~-----~~~~i~~~~~~~~~ 492 (841)
.|++.++..... +.+.. ....+ .++.++..+.+|+++...... ..++..+++.. ..+.+.. .
T Consensus 203 ~v~~~~~gt~~~~d~lvfe-~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~------~ 275 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFE-EPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP------R 275 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE------S
T ss_pred EEEEEECCCChHhCeeEEe-ecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC------C
Confidence 466666654322 23333 32334 378889888999988765444 67999998764 3333333 1
Q ss_pred CCCceeEEEeccCCEEEEEe---CCCCeEEEEEcCCCe----eEEEEcCCCCCCcceEEEEecCeEEEEeCCC
Q psy14257 493 GAWPNGLTLDYQLTRIYWID---AKSDSIHTVTYDGKD----HHVVLSNHDSLTHPFAIALFENHVYWTDWRT 558 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d---~~~~~I~~~~~dG~~----~~~i~~~~~~l~~P~gla~~~~~lY~td~~~ 558 (841)
... ..-.++..++++|+.- ..+.+|.+++++... ...++.... -..-.++.+++++|++....+
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~ 346 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYREN 346 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEET
T ss_pred CCc-eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEEC
Confidence 111 2223455578888743 345699999998754 234544322 123467888999999887554
No 175
>KOG0315|consensus
Probab=82.34 E-value=63 Score=33.14 Aligned_cols=232 Identities=13% Similarity=0.039 Sum_probs=124.1
Q ss_pred CCCeEEeccCccccccccccccEEEEe--cc-ccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCC
Q psy14257 219 SSPFVIFSNRHELRGVDLRTFNVIALI--SS-LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG 295 (841)
Q Consensus 219 ~~p~ll~s~~~~I~~~~~~~~~~~~l~--~~-~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 295 (841)
.+.+|..+..+.|+..++++.+..+++ .+ .+++.+|.|.++ ++ -.++...+|.+..-++..-. ....+...
T Consensus 51 dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d-gr--WMyTgseDgt~kIWdlR~~~---~qR~~~~~ 124 (311)
T KOG0315|consen 51 DKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD-GR--WMYTGSEDGTVKIWDLRSLS---CQRNYQHN 124 (311)
T ss_pred CcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeec-Ce--EEEecCCCceEEEEeccCcc---cchhccCC
Confidence 344555666778888888876544443 33 367888988876 34 44566777777766665321 11112111
Q ss_pred CCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEEEeCCCCeEE
Q psy14257 296 LSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVE 374 (841)
Q Consensus 296 l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~ 374 (841)
....-+.+.|.- .-++. ...+|.|..+++-.. --..++.+....-..|++++++..|--+. +.++.+
T Consensus 125 -spVn~vvlhpnQ--teLis--------~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cy 192 (311)
T KOG0315|consen 125 -SPVNTVVLHPNQ--TELIS--------GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCY 192 (311)
T ss_pred -CCcceEEecCCc--ceEEe--------ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEE
Confidence 222334555433 22332 235678999887543 44556666667778899998866654443 445555
Q ss_pred EEEecC-CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEE-EEecCCCCCceeEEEc
Q psy14257 375 SVRVDG-SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRR-TLIAGDMESPRAIALD 452 (841)
Q Consensus 375 ~~~ldG-~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~-~l~~~~l~~P~giavd 452 (841)
.-++-+ .....+.++..+.--..-++. | -+ .-..+...|-+..+.+.+.+.++-+.. ..+..+-..-.+-++.
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~-C---~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILR-C---LL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS 267 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEE-E---EE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec
Confidence 555433 222222222111000000000 0 00 000455566667778888888876333 3333444567888888
Q ss_pred CCCCeEEEEecCCCCCeEEEec
Q psy14257 453 PRFGLLFWTDWDSKAPRIERCS 474 (841)
Q Consensus 453 ~~~g~Ly~td~~~~~~~I~r~~ 474 (841)
.+..||+-+... ...+++-..
T Consensus 268 ~dg~YlvTassd-~~~rlW~~~ 288 (311)
T KOG0315|consen 268 ADGEYLVTASSD-HTARLWDLS 288 (311)
T ss_pred cCccEEEecCCC-Cceeecccc
Confidence 876676554433 344555443
No 176
>PTZ00420 coronin; Provisional
Probab=82.25 E-value=1.1e+02 Score=35.99 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=23.0
Q ss_pred EEeccCCEEEEEeCCCCeEEEEEcCCCeeEE
Q psy14257 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHV 530 (841)
Q Consensus 500 alD~~~~~LYw~d~~~~~I~~~~~dG~~~~~ 530 (841)
..|+..+.+|++-.+.+.|+.+++.......
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~ 299 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIRK 299 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEEe
Confidence 4567778999888888889999886554333
No 177
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=81.44 E-value=1.7 Score=29.40 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=17.7
Q ss_pred CCCCCCcccCCCCcEEecCCCceecC
Q psy14257 139 SDCHHDCYNTPEGFMCVCPRDMYLQP 164 (841)
Q Consensus 139 ~~C~~~C~~~~g~~~C~C~~Gy~l~~ 164 (841)
..|.+.|-... ...|.|++||.|..
T Consensus 6 t~CpA~CDpn~-~~~C~CPeGyIlde 30 (34)
T PF09064_consen 6 TECPADCDPNS-PGQCFCPEGYILDE 30 (34)
T ss_pred ccCCCccCCCC-CCceeCCCceEecC
Confidence 45666776433 34999999999854
No 178
>KOG0285|consensus
Probab=80.43 E-value=90 Score=33.68 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=82.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
+..|.|.+....|...++.....+.-+.+.....+|++|.+..-|||-.-- ...|..-+|.-. ++|-.- ...
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge---dk~VKCwDLe~n--kvIR~Y---hGH 234 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE---DKQVKCWDLEYN--KVIRHY---HGH 234 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC---CCeeEEEechhh--hhHHHh---ccc
Confidence 334445555566777777655555555556778899999988888876643 356666666422 222110 034
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcce-EEEE--ecCeEEEEeCCCCeEEEEeccCC
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPF-AIAL--FENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~-gla~--~~~~lY~td~~~~~i~~~~~~~g 569 (841)
+.....|++.+.- ++.++-.....++.-|......-.++.++ ..|. .+.. .+..+|-. .....|.-.+...|
T Consensus 235 lS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH---~~~V~~V~~~~~dpqvit~-S~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 235 LSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGH---TNPVASVMCQPTDPQVITG-SHDSTVRLWDLRAG 309 (460)
T ss_pred cceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCC---CCcceeEEeecCCCceEEe-cCCceEEEeeeccC
Confidence 5556677777544 44446555556666676655444444432 1222 2222 24455433 33456665665555
Q ss_pred cceEE
Q psy14257 570 SDVTL 574 (841)
Q Consensus 570 ~~~~~ 574 (841)
+....
T Consensus 310 kt~~t 314 (460)
T KOG0285|consen 310 KTMIT 314 (460)
T ss_pred ceeEe
Confidence 54443
No 179
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.78 E-value=29 Score=38.31 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=35.6
Q ss_pred CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEE
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVR 485 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~ 485 (841)
...++..+|+....+.|-...-....|..+.+....||+... ..+|.+++++....+.|..
T Consensus 59 ~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 59 NRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEEE
T ss_pred CcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEEE
Confidence 446677777777666655433233447778888899877542 3689999999877766665
No 180
>smart00284 OLF Olfactomedin-like domains.
Probab=79.69 E-value=64 Score=33.62 Aligned_cols=50 Identities=12% Similarity=-0.011 Sum_probs=30.3
Q ss_pred ceEEEEecC---CCcEE-EEccCCceEE-E--EecCCCCCceeEEEcCCCCeEEEEe
Q psy14257 413 KNLYWVESN---LDQIE-VAKLSGQFRR-T--LIAGDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 413 ~~LY~tD~~---~~~I~-v~~~~G~~~~-~--l~~~~l~~P~giavd~~~g~Ly~td 462 (841)
|.||.+++. ..+|. .+++...... + ........-..|..+|.++.||.=|
T Consensus 186 GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 186 GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred eEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 899999852 33444 5666543222 1 1112223344599999999999866
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=79.68 E-value=69 Score=31.90 Aligned_cols=90 Identities=8% Similarity=0.030 Sum_probs=56.5
Q ss_pred ceEEEEe-cCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVE-SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD-~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
..+.+.. ....+|..+++++.....+.. ...+.|..+|.+.+|..+..+...+.|.-.+++ ..+.+.. .
T Consensus 72 ~~favi~g~~~~~v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~-----~ 141 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKIST-----F 141 (194)
T ss_pred CEEEEEEccCCcccEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeec-----c
Confidence 4444443 234578888888766655532 345689999998888887766445667776666 4444444 2
Q ss_pred CCCCceeEEEeccCCEEEEEe
Q psy14257 492 RGAWPNGLTLDYQLTRIYWID 512 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d 512 (841)
.-...+.++.++.+..|..+.
T Consensus 142 ~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 142 EHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ccCcEEEEEEcCCCCEEEEEE
Confidence 333457788887666665544
No 182
>KOG0318|consensus
Probab=78.28 E-value=1.3e+02 Score=34.23 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=63.6
Q ss_pred eEEEEecCCCcEEEEccCCce-EE-EEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQF-RR-TLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~-~~-~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
.....-...+.|.++.+.|.. .. .........+..|++.|+..+|-.+|.. .++...+..-... ...... .
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~---rkvv~yd~~s~~~-~~~~w~---F 528 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS---RKVVLYDVASREV-KTNRWA---F 528 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC---CcEEEEEcccCce-ecceee---e
Confidence 333344456679999998854 22 2333455678999999998888888865 4555555532221 110000 1
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcC
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSN 534 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~ 534 (841)
.-...+.|+..+.+. +.-+-.-...|...+.+.....+++.+
T Consensus 529 HtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~~~i~ikn 570 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPAKHIIIKN 570 (603)
T ss_pred eeeeEEEEEeCCCce-EEEeccccceEEEEEccChhhheEecc
Confidence 123457888886544 333333334666666665544455444
No 183
>KOG0281|consensus
Probab=77.06 E-value=37 Score=36.24 Aligned_cols=98 Identities=20% Similarity=0.094 Sum_probs=60.7
Q ss_pred ceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccC
Q psy14257 413 KNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLT 490 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~ 490 (841)
.++.++-++..+|.+-+++ +.+.+++. .+-+|||.-..+|.|.++-.. ...|.-.+.. |.-.+++-..
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~----gHkRGIAClQYr~rlvVSGSS--DntIRlwdi~~G~cLRvLeGH---- 399 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLN----GHKRGIACLQYRDRLVVSGSS--DNTIRLWDIECGACLRVLEGH---- 399 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhh----cccccceehhccCeEEEecCC--CceEEEEeccccHHHHHHhch----
Confidence 4555666677788888776 45666653 467899999999999988765 4566555553 3333333221
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+.+ ..-+.+| ++|| ++-++.++|..-++..
T Consensus 400 EeL--vRciRFd--~krI-VSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 400 EEL--VRCIRFD--NKRI-VSGAYDGKIKVWDLQA 429 (499)
T ss_pred HHh--hhheeec--Ccee-eeccccceEEEEeccc
Confidence 111 2334554 4454 4666677777777654
No 184
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.41 E-value=1e+02 Score=32.14 Aligned_cols=195 Identities=12% Similarity=0.014 Sum_probs=105.2
Q ss_pred CCceEEEEccCCEEEEEe--CCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEE
Q psy14257 350 WPSSLVIDYNQDILYWCD--SHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEV 427 (841)
Q Consensus 350 ~P~glavD~~~~~lYwaD--~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v 427 (841)
.+...|+.++++.+.++. .....|+....++.....+... .+..+ .+|.. +.++..+........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~-~l~~P-----------S~d~~-g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG-SLTRP-----------SWDPD-GWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC-ccccc-----------cccCC-CCEEEEEcCCCceEE
Confidence 577888998888887777 6677888887776655544211 11111 22333 667777665554444
Q ss_pred E--ccCCceEEEEec-CCCC-CceeEEEcCCCCeEEEEecCCCCCeEEEecC--CCCC-cEEEE-EecccCCCCCCceeE
Q psy14257 428 A--KLSGQFRRTLIA-GDME-SPRAIALDPRFGLLFWTDWDSKAPRIERCSM--SGEH-RSVIV-RVDLLTSRGAWPNGL 499 (841)
Q Consensus 428 ~--~~~G~~~~~l~~-~~l~-~P~giavd~~~g~Ly~td~~~~~~~I~r~~l--dG~~-~~~i~-~~~~~~~~~~~P~gl 499 (841)
. ..+|+...+.+. ..+. ....|++.|+.-++-+.-......+|+.+.+ ++.. ...+. ...+....+.....+
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee
Confidence 4 244554443332 2233 5679999998665544432223577777765 3333 22221 111111223455677
Q ss_pred EEeccCCEEEEEeCCC-CeEEE-EEcCCCeeEEEEcCCCCCCcceEEEE--ecCeEEEEeCCCCeEEE
Q psy14257 500 TLDYQLTRIYWIDAKS-DSIHT-VTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIR 563 (841)
Q Consensus 500 alD~~~~~LYw~d~~~-~~I~~-~~~dG~~~~~i~~~~~~l~~P~gla~--~~~~lY~td~~~~~i~~ 563 (841)
+.-. +.+|.+.-... ..+.. +..+|...+.+.... ..+--+++ ....+|.++. +.+++
T Consensus 172 ~W~~-~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~---~~~~v~a~~~~~~~~~~t~~--~~~~~ 233 (253)
T PF10647_consen 172 AWSD-DSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVN---LGVPVVAVAASPSTVYVTDD--GGVLQ 233 (253)
T ss_pred eecC-CCEEEEEeCCCCCceeEEEEccCCcccccCCCC---CCcceEEeeCCCcEEEEECC--CcEEE
Confidence 7753 45666654433 33555 788888766652221 12223343 3467888873 45544
No 185
>KOG2106|consensus
Probab=75.71 E-value=1.5e+02 Score=33.61 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=89.9
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc-EEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR-SVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~-~~i~~~~~~~~ 491 (841)
+.||+--+ .+.|..-++++.+..++... -..-.|+|.+|. ..+|.|-.....-+|++ +-... ..++... ...
T Consensus 340 ~di~vGTt-rN~iL~Gt~~~~f~~~v~gh-~delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~~wt~~~~d~-~~~ 412 (626)
T KOG2106|consen 340 GDILVGTT-RNFILQGTLENGFTLTVQGH-GDELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKLEWTKIIEDP-AEC 412 (626)
T ss_pred CcEEEeec-cceEEEeeecCCceEEEEec-ccceeeEEcCCC-hhheeeccCcceEEEcc---CCceeEEEEecCc-eeE
Confidence 44776443 46777777776665544432 347899999997 45677764433344554 11111 1111100 001
Q ss_pred CCCCcee-EEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecC--eEEEEeCCCCeEEEEeccC
Q psy14257 492 RGAWPNG-LTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFEN--HVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 492 ~~~~P~g-lalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~--~lY~td~~~~~i~~~~~~~ 568 (841)
.-..|.| +|+-...++.++.|..+..+..+..++.....+.... ...-+++.-.++ +||-.+.......|++|-.
T Consensus 413 ~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp--~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 413 ADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP--DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred eeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC--CCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 1234554 5566678999999988887777888866555554332 122234444555 5666777777888999988
Q ss_pred CcceEEE
Q psy14257 569 GSDVTLI 575 (841)
Q Consensus 569 g~~~~~i 575 (841)
|.-++.+
T Consensus 491 gs~ithL 497 (626)
T KOG2106|consen 491 GSPITHL 497 (626)
T ss_pred CceeEEe
Confidence 8544444
No 186
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=75.71 E-value=3.5 Score=27.79 Aligned_cols=19 Identities=32% Similarity=0.803 Sum_probs=15.8
Q ss_pred ceeecCCC-CceEEeecCCeee
Q psy14257 184 DCEPSVSN-NSYKCTCHAGYEL 204 (841)
Q Consensus 184 ~C~~~~~~-g~~~C~C~~G~~l 204 (841)
.|... . ++|.|.|++||..
T Consensus 11 ~C~~~--~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 11 TCIDL--PGGGYTCECPPGYTG 30 (32)
T ss_dssp EEEEE--STSEEEEEEBTTEES
T ss_pred EEEeC--CCCCEEeECCCCCcc
Confidence 66776 6 8999999999973
No 187
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=75.65 E-value=2.8 Score=28.27 Aligned_cols=25 Identities=36% Similarity=0.938 Sum_probs=19.4
Q ss_pred CCcc--CceeecCCCCceEEeecCCeeec
Q psy14257 179 GTCS--QDCEPSVSNNSYKCTCHAGYELE 205 (841)
Q Consensus 179 ~~Cs--~~C~~~~~~g~~~C~C~~G~~l~ 205 (841)
..|. ..|.+. .++|.|.|+.||...
T Consensus 6 ~~C~~~~~C~~~--~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNT--PGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecC--CCCeEeECCCCCccc
Confidence 3454 578888 889999999999754
No 188
>KOG1408|consensus
Probab=75.31 E-value=1.8e+02 Score=34.42 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=53.6
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
...+|+.||+.+.++-.+- .+++||..+++--+ .+-.--.++|-+.-+|..+...- ....|..-.+
T Consensus 325 PD~IA~~Fdet~~klscVY-ndhSlYvWDvrD~~--kvgk~~s~lyHS~ciW~Ve~~p~--------nv~~~~~acl--- 390 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVY-NDHSLYVWDVRDVN--KVGKCSSMLYHSACIWDVENLPC--------NVHSPTAACL--- 390 (1080)
T ss_pred CceeEEEecCCCceEEEEE-cCceEEEEeccccc--cccceeeeeeccceeeeeccccc--------cccCcccccC---
Confidence 3456888999999987776 68999999886533 11122244666666666432211 1222332222
Q ss_pred CCcEEEEecCCCCCeEEEEecCC
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEG 771 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g 771 (841)
.+--|.|.| ..++|++++|++
T Consensus 391 p~~cF~TCS--sD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 391 PRGCFTTCS--SDGTIRLWDLAF 411 (1080)
T ss_pred CccceeEec--CCCcEEEeeccc
Confidence 133488865 678999999987
No 189
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=75.12 E-value=3.2 Score=40.21 Aligned_cols=67 Identities=25% Similarity=0.608 Sum_probs=43.6
Q ss_pred CcccCCCCcEEecCCCceecCCCCccccccccCC----CCCccC--ceeecC---CCCceEEeecCCeeecCCCCceEe
Q psy14257 144 DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA----WGTCSQ--DCEPSV---SNNSYKCTCHAGYELEPDMFTCKS 213 (841)
Q Consensus 144 ~C~~~~g~~~C~C~~Gy~l~~d~~~C~~~~eC~~----~~~Cs~--~C~~~~---~~g~~~C~C~~G~~l~~d~~~C~~ 213 (841)
...+....|.|.|.+||.+. +..+|+...+|.. ..+|.. .|.+.. ....|.|.|..||.+..+ .|..
T Consensus 12 ~LiQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCvp 87 (197)
T PF06247_consen 12 YLIQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCVP 87 (197)
T ss_dssp EEEEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEEE
T ss_pred EEEEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEch
Confidence 44556778999999999986 5668998888852 346643 676651 136899999999998754 5553
No 190
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=74.09 E-value=22 Score=40.64 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=25.8
Q ss_pred ccccCcCCCceEEEEccCCEEEEEeCCCCeE
Q psy14257 343 LVTKNIQWPSSLVIDYNQDILYWCDSHLNTV 373 (841)
Q Consensus 343 l~~~~~~~P~glavD~~~~~lYwaD~~~~~I 373 (841)
+..+.+.+|.+|++.+..+.+|++.+++.+-
T Consensus 411 lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r 441 (616)
T COG3211 411 LGATPMDRPEWIAVNPGTGEVYFTLTNNGKR 441 (616)
T ss_pred hCCccccCccceeecCCcceEEEEeCCCCcc
Confidence 4456889999999999999999999876543
No 191
>KOG1274|consensus
Probab=71.54 E-value=2.5e+02 Score=34.30 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=114.6
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCC--CeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDG--KDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG--~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
+.|.+|+.+..||.++.. +.|...+-.. ....++-.. ...-.+++.+.+++..+ ...+.|.+..+..++.-.+
T Consensus 17 t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~---g~~v~~ia~~s~~f~~~-s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDIS---GELVSSIACYSNHFLTG-SEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred EEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhhcc---CceeEEEeecccceEEe-eccceEEEeeCCCCCccce
Confidence 678899999999988763 4454443221 222322211 11235677777754444 4557788887766666555
Q ss_pred EecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEee-cCCeEEEEecC
Q psy14257 575 IQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFS-RPREIRGVDLE 653 (841)
Q Consensus 575 i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~-~~~~i~~~~l~ 653 (841)
+.+- +.|.. ++|+. . ....++++ +...|..+.++
T Consensus 92 L~Rf-tlp~r-------------------~~~v~-g------------------------~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 92 LARF-TLPIR-------------------DLAVS-G------------------------SGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred eeee-eccce-------------------EEEEe-c------------------------CCcEEEeecCceeEEEEecc
Confidence 5432 21111 11111 1 11122222 23345555554
Q ss_pred CCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeee------------eeeeccccccc
Q psy14257 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAV------------FEFYLTPLSKR 721 (841)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~ 721 (841)
...... ....--..+.+|+|||..+.|-+++ -+|.++..+++..........+ ..+.|.|-++.
T Consensus 127 D~s~~~---~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 127 DSSQEK---VLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred ccchhe---eecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 332211 1111223457899999988888777 5789998888755432222222 22456665333
Q ss_pred cccc------------CceEEEEee-CCCC-CcceeEEeecCCcEEEEecCCCCCeEEEEecCCcce
Q psy14257 722 SSIV------------GGQIQLVVD-AGIS-HPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQ 774 (841)
Q Consensus 722 ~~~~------------~~~~~~i~~-~~~~-~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~ 774 (841)
-... +.+..-.+. .... ....++.++.+ .|++-+ ..++.|.|++.+...|
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs-~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG--KYIAAS-TLDGQILVWNVDTHER 266 (933)
T ss_pred EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC--cEEeee-ccCCcEEEEecccchh
Confidence 2111 111111111 1122 25678888886 566653 5688899999986433
No 192
>KOG3914|consensus
Probab=70.49 E-value=1.1e+02 Score=33.47 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=97.8
Q ss_pred ceEEEEecCCCcEEEEccCCceE-EEEe--cCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecc
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFR-RTLI--AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDL 488 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~-~~l~--~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~ 488 (841)
+-|++++.. .++.++.+.++.. ..++ ...-..|.+|.+....-.+-++|.......+.....+ |..+..+.
T Consensus 75 ~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG---- 149 (390)
T KOG3914|consen 75 RLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG---- 149 (390)
T ss_pred eEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh----
Confidence 556666654 4555555554432 1111 1123678999988888888888854222333333334 55555553
Q ss_pred cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEecc
Q psy14257 489 LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 489 ~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~ 567 (841)
.+..-..+++.++.++|.-+|- ..+|+...+.+.+. ..+.-++. .....|++..+++.|+-.+.+.|+-.+..
T Consensus 150 ---hvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclGH~--eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 150 ---HVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLGHK--EFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred ---hhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccccH--hheeeeeeccCceeeecCCCCcEEEEecc
Confidence 4556678999888888888874 57899888887654 22222221 22467899999999999999999999988
Q ss_pred CCcceEE
Q psy14257 568 NGSDVTL 574 (841)
Q Consensus 568 ~g~~~~~ 574 (841)
+|+....
T Consensus 224 sgk~L~t 230 (390)
T KOG3914|consen 224 SGKLLDT 230 (390)
T ss_pred cCCcccc
Confidence 8887643
No 193
>PTZ00420 coronin; Provisional
Probab=70.27 E-value=2.3e+02 Score=33.45 Aligned_cols=121 Identities=6% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC--CCCcE------EEEEecccCCCCCCceeEEEeccCCEEEEEeC
Q psy14257 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS--GEHRS------VIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 442 ~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld--G~~~~------~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~ 513 (841)
.......|+++|..+.++.+-.. .+.|..-++. +.... ..+. ..-.....+++.+.+..++.+-.
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~--DgtIrIWDi~t~~~~~~~i~~p~~~L~-----gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSE--DLTIRVWEIPHNDESVKEIKDPQCILK-----GHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeC--CCeEEEEECCCCCccccccccceEEee-----cCCCcEEEEEECCCCCeEEEEEe
Confidence 34567889999875555555433 3444444443 22111 1111 22344578888877666766655
Q ss_pred CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 514 KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 514 ~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
..+.|...++........+... .....+++ .++.++.+-...+.|.-++..+++..
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 5678888888654332222211 23466776 35666666555667777777665433
No 194
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=70.09 E-value=9.2 Score=35.53 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.3
Q ss_pred CCCccC
Q psy14257 79 ETNCTH 84 (841)
Q Consensus 79 e~~C~~ 84 (841)
..+|..
T Consensus 112 ~~~CG~ 117 (136)
T PF04885_consen 112 PRHCGA 117 (136)
T ss_pred ccccCC
Confidence 333433
No 195
>KOG0266|consensus
Probab=68.80 E-value=2.2e+02 Score=32.63 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=81.8
Q ss_pred EEEEecCCCcEEEEcc-CC-ceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCC
Q psy14257 415 LYWVESNLDQIEVAKL-SG-QFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTS 491 (841)
Q Consensus 415 LY~tD~~~~~I~v~~~-~G-~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~ 491 (841)
..++-+...+|.+.++ +. ...+++. +.......++++|.. .+..+-.. ...|..-++. |+..+++..
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~--D~tvriWd~~~~~~~~~l~~------ 286 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSD--DGTVRIWDVRTGECVRKLKG------ 286 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecC--CCcEEEEeccCCeEEEeeec------
Confidence 3344455567777776 43 4555554 455667999999986 66666554 3445444544 444444433
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeE--EEEcCCCCCCcceEEEEe-c-CeEEEEeCCCCeEEEEecc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH--VVLSNHDSLTHPFAIALF-E-NHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~--~i~~~~~~l~~P~gla~~-~-~~lY~td~~~~~i~~~~~~ 567 (841)
.-..-+++++... ++++++-...+.|...|+.+.... ..+...+... |.....| . +...++-...+.+.-.+..
T Consensus 287 hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 287 HSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred cCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 2334578888854 566666677889999999887632 2222222222 4444443 3 4444554555555555544
Q ss_pred CCc
Q psy14257 568 NGS 570 (841)
Q Consensus 568 ~g~ 570 (841)
.+.
T Consensus 365 ~~~ 367 (456)
T KOG0266|consen 365 SGK 367 (456)
T ss_pred CCc
Confidence 443
No 196
>KOG4441|consensus
Probab=68.73 E-value=99 Score=36.60 Aligned_cols=138 Identities=12% Similarity=0.110 Sum_probs=86.9
Q ss_pred cccceEEEEecCC------CcEEEEccCCceEEEEecCCCCCce-eEEEcCCCCeEEEEecCC---CCCeEEEecCCCCC
Q psy14257 410 WIGKNLYWVESNL------DQIEVAKLSGQFRRTLIAGDMESPR-AIALDPRFGLLFWTDWDS---KAPRIERCSMSGEH 479 (841)
Q Consensus 410 w~~~~LY~tD~~~------~~I~v~~~~G~~~~~l~~~~l~~P~-giavd~~~g~Ly~td~~~---~~~~I~r~~ldG~~ 479 (841)
..++.||++-... ..++++++....-..+ ..+..+| ++++-.-.|.||..-... .-..|++.+.....
T Consensus 330 ~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~--a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 330 VLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV--APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred EECCEEEEEccccCCCcccceEEEecCCCCceecc--CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 3458899986554 4677888776553332 2455554 344444689999984221 23479999988766
Q ss_pred cEEEEEecccCCCCCCceeEEEeccCCEEEEEeC------CCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEE
Q psy14257 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDA------KSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYW 553 (841)
Q Consensus 480 ~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~------~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~ 553 (841)
...+... .. .=.+.++-..+++||.+-. ..+.++++|+....-+.+.... .-..-+|+++.+++||+
T Consensus 408 W~~va~m-----~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 408 WTPVAPM-----LT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYV 480 (571)
T ss_pred ccccCCC-----Cc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEE
Confidence 6665431 11 1234444446899999864 3368899999877666554332 11233678999999999
Q ss_pred EeC
Q psy14257 554 TDW 556 (841)
Q Consensus 554 td~ 556 (841)
.-.
T Consensus 481 vGG 483 (571)
T KOG4441|consen 481 VGG 483 (571)
T ss_pred ECC
Confidence 744
No 197
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=68.72 E-value=2.4e+02 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=14.9
Q ss_pred eeEEEcCCCCeEEEEecC
Q psy14257 447 RAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 447 ~giavd~~~g~Ly~td~~ 464 (841)
.++|+||.+|.||+....
T Consensus 390 ~~~A~Dp~~g~~yvp~~~ 407 (527)
T TIGR03075 390 QPMAYSPKTGLFYVPANE 407 (527)
T ss_pred CCceECCCCCEEEEeccc
Confidence 358999999999998754
No 198
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=67.14 E-value=1.7e+02 Score=30.60 Aligned_cols=153 Identities=15% Similarity=0.068 Sum_probs=79.4
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCC--CccccCCCCCCccccccceE---EEEecCCCcEEEEccCCce
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSD--SRVGIPNCRPEDNLWIGKNL---YWVESNLDQIEVAKLSGQF 434 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~--~~~~i~~~~~~avdw~~~~L---Y~tD~~~~~I~v~~~~G~~ 434 (841)
++.||.--.....|.|++|.......-..++..+.. .........-+++.....-| |-+....+.|.+.++|-..
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~t 157 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPET 157 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCccc
Confidence 688999999999999999988766632222111111 00000000011122223334 4445556679988888643
Q ss_pred EEEE--ecCCCCCce---eEEEcCCCCeEEEEecCCCC-CeE-EEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCE
Q psy14257 435 RRTL--IAGDMESPR---AIALDPRFGLLFWTDWDSKA-PRI-ERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTR 507 (841)
Q Consensus 435 ~~~l--~~~~l~~P~---giavd~~~g~Ly~td~~~~~-~~I-~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~ 507 (841)
..+. ....+.++. +..+ =|.||.++..... .+| +.+++. ++....+...+ .........|.-+|.+++
T Consensus 158 L~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~-t~~~~~~~i~f-~~~~~~~~~l~YNP~dk~ 232 (250)
T PF02191_consen 158 LSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTY-TGKEEDVSIPF-PNPYGNISMLSYNPRDKK 232 (250)
T ss_pred CceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECC-CCceeceeeee-ccccCceEeeeECCCCCe
Confidence 3221 112333332 2333 3899999966322 333 333443 22222222111 134456677888999999
Q ss_pred EEEEeCCCCe
Q psy14257 508 IYWIDAKSDS 517 (841)
Q Consensus 508 LYw~d~~~~~ 517 (841)
||.=|.+.-.
T Consensus 233 LY~wd~G~~v 242 (250)
T PF02191_consen 233 LYAWDNGYQV 242 (250)
T ss_pred EEEEECCeEE
Confidence 9988864333
No 199
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=66.30 E-value=4.1 Score=21.49 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=6.6
Q ss_pred EEecCCCce
Q psy14257 153 MCVCPRDMY 161 (841)
Q Consensus 153 ~C~C~~Gy~ 161 (841)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 588999986
No 200
>KOG1407|consensus
Probab=65.55 E-value=1.7e+02 Score=30.30 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=0.0
Q ss_pred ecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEE
Q psy14257 254 LDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKA 333 (841)
Q Consensus 254 vd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~ 333 (841)
+-|+..... ++.+-.+...|.+.+...+. -...+...+ .|+++.|+--++.
T Consensus 70 l~w~~~~~d--~~atas~dk~ir~wd~r~~k--~~~~i~~~~-------------eni~i~wsp~g~~------------ 120 (313)
T KOG1407|consen 70 LCWDPKHPD--LFATASGDKTIRIWDIRSGK--CTARIETKG-------------ENINITWSPDGEY------------ 120 (313)
T ss_pred heeCCCCCc--ceEEecCCceEEEEEeccCc--EEEEeeccC-------------cceEEEEcCCCCE------------
Q ss_pred ccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccc
Q psy14257 334 GMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413 (841)
Q Consensus 334 ~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~ 413 (841)
+++-...+.|-+.|....+|.....--.....+.- |..+
T Consensus 121 --------------------~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w---------------------~~~n 159 (313)
T KOG1407|consen 121 --------------------IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW---------------------NNSN 159 (313)
T ss_pred --------------------EEEecCcccEEEEEecccceeehhcccceeeeeee---------------------cCCC
Q ss_pred eEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeE
Q psy14257 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLL 458 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~L 458 (841)
+|||...+.|.|.....---....-+...-.+-.-|.+||.++++
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE
No 201
>KOG4378|consensus
Probab=65.47 E-value=2.4e+02 Score=31.91 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=69.7
Q ss_pred eeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCc-eeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 447 RAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWP-NGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 447 ~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P-~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
+-|-.++..++|..+... .+.|..-+..|.....-.. ..-..| .||.+.+.+..|+++-....+|..+|...
T Consensus 168 Rll~ys~skr~lL~~asd--~G~VtlwDv~g~sp~~~~~-----~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSPIFHAS-----EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred EEeecccccceeeEeecc--CCeEEEEeccCCCcccchh-----hhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 455566666777666654 5566666666544332222 222334 58999999999999998889999998764
Q ss_pred CeeE-EEEcCCCCCCcce-EEEEe-cCeEEEEeCCCCeEEEEeccC
Q psy14257 526 KDHH-VVLSNHDSLTHPF-AIALF-ENHVYWTDWRTNSVIRANKWN 568 (841)
Q Consensus 526 ~~~~-~i~~~~~~l~~P~-gla~~-~~~lY~td~~~~~i~~~~~~~ 568 (841)
.... .+. -.+|+ .+|+- .|++..+-..+++|+..+...
T Consensus 241 ~~s~~~l~-----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 241 QASTDRLT-----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ccccceee-----ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 3222 222 24565 46663 477777777778888777543
No 202
>KOG0266|consensus
Probab=65.45 E-value=2.5e+02 Score=32.12 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=87.8
Q ss_pred eEEEEecCCCcEEEEccCCce---EEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccC
Q psy14257 414 NLYWVESNLDQIEVAKLSGQF---RRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLT 490 (841)
Q Consensus 414 ~LY~tD~~~~~I~v~~~~G~~---~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~ 490 (841)
+..++-...+.|....+.+.. .+.+ .+.....+++++.|. |....+-.....-+|+.+.-++...+++..
T Consensus 172 ~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----- 244 (456)
T KOG0266|consen 172 RALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----- 244 (456)
T ss_pred CeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecC-----
Confidence 334444444555555553322 2222 334456788999987 444455444334556666445566666643
Q ss_pred CCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccCC
Q psy14257 491 SRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWNG 569 (841)
Q Consensus 491 ~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~g 569 (841)
.....+.+++.+.+ +++.+-...+.|+.-+..+......+..+ -..-.++++ .++.++++-...+.|...+..++
T Consensus 245 -H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 245 -HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred -CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCccEEEEECCCC
Confidence 34456899999876 77777777788888888764333333332 122346666 45777777777888888887776
Q ss_pred cc
Q psy14257 570 SD 571 (841)
Q Consensus 570 ~~ 571 (841)
..
T Consensus 321 ~~ 322 (456)
T KOG0266|consen 321 SK 322 (456)
T ss_pred ce
Confidence 63
No 203
>KOG1274|consensus
Probab=65.27 E-value=1.2e+02 Score=36.68 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=80.7
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecC--CccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDG--SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAK 429 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG--~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~ 429 (841)
..|.+|+.+..||.++.+. .|+..+-.- ...+.+.... ....+++ ...+.+.+-+..+.|.++.
T Consensus 17 t~i~~d~~gefi~tcgsdg-~ir~~~~~sd~e~P~ti~~~g----~~v~~ia---------~~s~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDG-DIRKWKTNSDEEEPETIDISG----ELVSSIA---------CYSNHFLTGSEQNTVLRYK 82 (933)
T ss_pred EEEEEcCCCCEEEEecCCC-ceEEeecCCcccCCchhhccC----ceeEEEe---------ecccceEEeeccceEEEee
Confidence 4688999999888887643 333332211 2222211000 0000110 1144666777788999998
Q ss_pred cCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCC-ceeEEEeccCCE
Q psy14257 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAW-PNGLTLDYQLTR 507 (841)
Q Consensus 430 ~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~-P~glalD~~~~~ 507 (841)
++-....+++..-.-.-+.++|+.. |.+-..-.. .-.|...+++ ++..+++.. ... ..+|.+|+.+..
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~g~-g~~iaagsd--D~~vK~~~~~D~s~~~~lrg-------h~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVSGS-GKMIAAGSD--DTAVKLLNLDDSSQEKVLRG-------HDAPVLQLSYDPKGNF 152 (933)
T ss_pred CCCCCccceeeeeeccceEEEEecC-CcEEEeecC--ceeEEEEeccccchheeecc-------cCCceeeeeEcCCCCE
Confidence 8755544444432234578899865 443333222 4567777775 445555433 223 347888876555
Q ss_pred EEEEeCCCCeEEEEEcCC
Q psy14257 508 IYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~dG 525 (841)
|-++.. ++.|+..+++.
T Consensus 153 LAvss~-dG~v~iw~~~~ 169 (933)
T KOG1274|consen 153 LAVSSC-DGKVQIWDLQD 169 (933)
T ss_pred EEEEec-CceEEEEEccc
Confidence 555543 66777777653
No 204
>KOG4649|consensus
Probab=64.53 E-value=1.8e+02 Score=30.16 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=72.3
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCC-cEEEEcc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLD-QIEVAKL 430 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~-~I~v~~~ 430 (841)
.=+|||+..+.|||-..-..+|+.--+-=++. +++. =.++.||+.+..++ +++.+..
T Consensus 34 ~~~avd~~sG~~~We~ilg~RiE~sa~vvgdf-VV~G---------------------Cy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 34 IVIAVDPQSGNLIWEAILGVRIECSAIVVGDF-VVLG---------------------CYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred eEEEecCCCCcEEeehhhCceeeeeeEEECCE-EEEE---------------------EccCcEEEEEecchhheeeeee
Confidence 34789999999999988777776533221111 1111 12389999998877 6766544
Q ss_pred CCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEE
Q psy14257 431 SGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510 (841)
Q Consensus 431 ~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw 510 (841)
.++.. -+ -.+|+..|.+|....+ +..+..+.. ...-+...+- +...-.+-+|++-.+.||+
T Consensus 92 ~~~vk----------~~-a~~d~~~glIycgshd---~~~yalD~~--~~~cVykskc---gG~~f~sP~i~~g~~sly~ 152 (354)
T KOG4649|consen 92 LETVK----------VR-AQCDFDGGLIYCGSHD---GNFYALDPK--TYGCVYKSKC---GGGTFVSPVIAPGDGSLYA 152 (354)
T ss_pred hhhhc----------cc-eEEcCCCceEEEecCC---CcEEEeccc--ccceEEeccc---CCceeccceecCCCceEEE
Confidence 33211 11 1356666666665532 333333322 1111221110 1111133457776789998
Q ss_pred EeCCCCeEEEEEcCCC
Q psy14257 511 IDAKSDSIHTVTYDGK 526 (841)
Q Consensus 511 ~d~~~~~I~~~~~dG~ 526 (841)
+-. .+++.+++.+..
T Consensus 153 a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 153 AIT-AGAVLAVTKNPY 167 (354)
T ss_pred Eec-cceEEEEccCCC
Confidence 876 466666666544
No 205
>KOG2048|consensus
Probab=64.49 E-value=2.9e+02 Score=32.48 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=68.0
Q ss_pred CceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEee-CCCCCcceeEEeec
Q psy14257 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVD-AGISHPSGLAIDWI 748 (841)
Q Consensus 670 ~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~glAvD~~ 748 (841)
.+.++.|-...+++++......++....+.+..... ...+.. +.-....-|++.+.
T Consensus 430 ~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke-----------------------l~~~~~~~~~~~I~~l~~Ssd 486 (691)
T KOG2048|consen 430 DASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE-----------------------LKSIQSQAKCPSISRLVVSSD 486 (691)
T ss_pred cceeeEEEecCceEEEEecccceeEEEEecCcchhh-----------------------hhccccccCCCcceeEEEcCC
Confidence 345666766677777766445555555555433100 111111 23456778999999
Q ss_pred CCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCC-CceEEEEe-CCCCeEEEEecCCCcceEEEEec
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLS-KISSIAVW-PVKGKMFWSNVTKQVVTIEMAFM 820 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~-~p~~iavd-~~~g~lyw~d~~~~~~~I~~~~~ 820 (841)
+..|-.+ + ..+.|.+++|.+...+.+... +. ..+++++. +..+.|-.+..+++ |.-.++
T Consensus 487 G~yiaa~--~-t~g~I~v~nl~~~~~~~l~~r-------ln~~vTa~~~~~~~~~~lvvats~nQ---v~efdi 547 (691)
T KOG2048|consen 487 GNYIAAI--S-TRGQIFVYNLETLESHLLKVR-------LNIDVTAAAFSPFVRNRLVVATSNNQ---VFEFDI 547 (691)
T ss_pred CCEEEEE--e-ccceEEEEEcccceeecchhc-------cCcceeeeeccccccCcEEEEecCCe---EEEEec
Confidence 9888888 3 678899999998866666542 22 33444555 34456666666553 555555
No 206
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=64.13 E-value=51 Score=37.88 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=69.7
Q ss_pred CCCceEEEEecCCCEEEEEECCCC----------------eEEEEEcccCceeeeeeeeeeeecccccccccccCceEE-
Q psy14257 668 VFSPNNLNFDAANKKIYWTDQEYN----------------EVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQ- 730 (841)
Q Consensus 668 ~~~~~~v~~d~~~~~iyw~d~~~~----------------~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 730 (841)
+.+|..|++.|.++.||++.+.++ .|+|+...+.. ..-|+..|..++.++...
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d----------~t~~~ftWdlF~~aG~~~~ 485 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGD----------HTDTKFTWDLFVEAGNPSV 485 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCC----------ccCccceeeeeeecCCccc
Confidence 467889999999999999976544 34554443321 111233333333322211
Q ss_pred -------EEeeCCCCCcceeEEeecCCcEEEEecCCCC----CeEE-EE---ecCCcceEE--EEcCCCCCCCcCCCceE
Q psy14257 731 -------LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQ----SKIV-VC---NLEGEYQTT--ILSNESNDTSTLSKISS 793 (841)
Q Consensus 731 -------~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~----~~I~-v~---~l~g~~~~~--~~~~~~~~~~~l~~p~~ 793 (841)
.+...-+..|-+|+||+.++..--|| ... +++. +. ..++...++ ++.+ .. -....|
T Consensus 486 ~~~~~~~~~~~~~f~~PDnl~fD~~GrLWi~TD--g~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~-P~----g~E~tG 558 (616)
T COG3211 486 LEGGASANINANWFNSPDNLAFDPWGRLWIQTD--GSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTG-PI----GCEFTG 558 (616)
T ss_pred cccccccCcccccccCCCceEECCCCCEEEEec--CCCCccCcccccccccccCCCccceeeeeccC-CC----cceeec
Confidence 12223367899999999986555553 322 2111 11 122222211 1111 00 246679
Q ss_pred EEEeCCCCeEEEEecCC
Q psy14257 794 IAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 794 iavd~~~g~lyw~d~~~ 810 (841)
++..|...-||+.-++.
T Consensus 559 ~~FspD~~TlFV~vQHP 575 (616)
T COG3211 559 PCFSPDGKTLFVNVQHP 575 (616)
T ss_pred ceeCCCCceEEEEecCC
Confidence 99999999999998875
No 207
>KOG0276|consensus
Probab=63.70 E-value=2.9e+02 Score=32.25 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=55.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcE-EEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRS-VIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~-~i~~~~~~~~ 491 (841)
.+-.++-+...+|.+++.+.-.+.......-...|.||++|..=++ .|... .-.|..-+.++.-.. .... +
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v-LtsSD--Dm~iKlW~we~~wa~~qtfe-----G 138 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV-LTSSD--DMTIKLWDWENEWACEQTFE-----G 138 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE-EecCC--ccEEEEeeccCceeeeeEEc-----C
Confidence 4455666777899999997654444444455788999999985543 33333 345555555554322 2222 3
Q ss_pred CCCCceeEEEeccCCEEEEEeC
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~ 513 (841)
.-.....+++.|....-|.+-.
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred cceEEEEEEecCCCccceeeee
Confidence 3445566777776555554433
No 208
>KOG0308|consensus
Probab=63.55 E-value=2.6e+02 Score=32.77 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcc--eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCc
Q psy14257 735 AGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQV 812 (841)
Q Consensus 735 ~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~--~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~ 812 (841)
+.-++++.|-++..++++.=+. ...+|.+.+|.-+. .+.++.. .-..++.++|.-.++|--+..+
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~--------e~VWaL~~~~sf~~vYsG~rd~-- 277 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHK--------EGVWALQSSPSFTHVYSGGRDG-- 277 (735)
T ss_pred ccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEecc--------CceEEEeeCCCcceEEecCCCC--
Confidence 5778899999999998888774 46899999998763 2333443 3478888888878888877765
Q ss_pred ceEEEEecCCCceEEEecCCCCce
Q psy14257 813 VTIEMAFMDGTKRETVVSQKKYPA 836 (841)
Q Consensus 813 ~~I~~~~~dG~~~~~l~~~~~~~~ 836 (841)
.|+|++|.-....+++-+..+|.
T Consensus 278 -~i~~Tdl~n~~~~tlick~daPv 300 (735)
T KOG0308|consen 278 -NIYRTDLRNPAKSTLICKEDAPV 300 (735)
T ss_pred -cEEecccCCchhheEeecCCCch
Confidence 49999999976666666665543
No 209
>KOG0318|consensus
Probab=63.25 E-value=2.7e+02 Score=31.75 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=159.8
Q ss_pred ceEEEEecCCCcEEEEc-cCCceEEEEecCC--CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEeccc
Q psy14257 413 KNLYWVESNLDQIEVAK-LSGQFRRTLIAGD--MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~-~~G~~~~~l~~~~--l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~ 489 (841)
|.+|.+-...++|..++ .+|+....+-... -....+|+-.|+..++ .|.......+|+-+..+--.++....
T Consensus 202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~slv~t~~~~---- 276 (603)
T KOG0318|consen 202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTNSLVSTWPMG---- 276 (603)
T ss_pred CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeeccceEEEeecC----
Confidence 67777777778888876 3455554443211 2234556665553333 33333234556555544111111111
Q ss_pred CCCC-CCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEe-cCeEEEEeCCCCeEEEEecc
Q psy14257 490 TSRG-AWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALF-ENHVYWTDWRTNSVIRANKW 567 (841)
Q Consensus 490 ~~~~-~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~-~~~lY~td~~~~~i~~~~~~ 567 (841)
..+ ..--|.-. .+++|.-.. ..+.|..++++-...-.++.++ ...-.+|++. ++.-.++-...+.|...+..
T Consensus 277 -~~v~dqqvG~lW--qkd~lItVS-l~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 277 -STVEDQQVGCLW--QKDHLITVS-LSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred -CchhceEEEEEE--eCCeEEEEE-cCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 000 00011111 122332222 2344444444332232333332 2333566663 33333344456777777655
Q ss_pred CCcceEEEec-ccCCCce-------------e--c--cCCcccCCCCCC---CCCCccccccC--CCCceeeeCCCCcee
Q psy14257 568 NGSDVTLIQR-TLTQPFI-------------Y--V--NGVVKKSPCEMN---NGNCSHLCLIG--MNGTYKCQCPHVMKL 624 (841)
Q Consensus 568 ~g~~~~~i~~-~~~~p~~-------------~--h--~qp~~~n~C~~~---ng~Cs~lC~~~--~~~~~~C~Cp~g~~l 624 (841)
+|..-.+..+ ...+..+ + + +-|...+-+... .-+++.+++.. +.+...-+|-.+..|
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 5443322100 0011111 0 0 112222223222 24555555533 323466778888887
Q ss_pred ecCCCccccc-------------CceeEEeec-CCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCC
Q psy14257 625 MSDNKTCQVA-------------DSQFIIFSR-PREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEY 690 (841)
Q Consensus 625 ~~d~~tC~~~-------------~~~~l~~~~-~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~ 690 (841)
..|.+.+.+. ...++.+.. ...+..+.|.+...... .........+..|+|.|...++-..| ..
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee-~~~~~h~a~iT~vaySpd~~yla~~D-a~ 508 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE-AKLLEHRAAITDVAYSPDGAYLAAGD-AS 508 (603)
T ss_pred EecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce-eeeecccCCceEEEECCCCcEEEEec-cC
Confidence 7777666431 223444443 34566666655332221 22234446788999999988888888 45
Q ss_pred CeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecC
Q psy14257 691 NEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLE 770 (841)
Q Consensus 691 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~ 770 (841)
+.+...+...... . .....+ .-..+.+||-.+.+. +.-| ..-...|.+.+++
T Consensus 509 rkvv~yd~~s~~~-~---------------------~~~w~F---HtakI~~~aWsP~n~-~vAT--GSlDt~Viiysv~ 560 (603)
T KOG0318|consen 509 RKVVLYDVASREV-K---------------------TNRWAF---HTAKINCVAWSPNNK-LVAT--GSLDTNVIIYSVK 560 (603)
T ss_pred CcEEEEEcccCce-e---------------------cceeee---eeeeEEEEEeCCCce-EEEe--ccccceEEEEEcc
Confidence 5565555544330 0 001111 112334454444432 3334 3455668888888
Q ss_pred CcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 771 GEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 771 g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
.-...+++.+ .++.| |. .|-|.|...
T Consensus 561 kP~~~i~ikn--------AH~~g--Vn----~v~wlde~t 586 (603)
T KOG0318|consen 561 KPAKHIIIKN--------AHLGG--VN----SVAWLDEST 586 (603)
T ss_pred ChhhheEecc--------ccccC--ce----eEEEecCce
Confidence 7766666665 46666 31 567777643
No 210
>KOG0272|consensus
Probab=62.43 E-value=2.5e+02 Score=31.08 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=129.2
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCC-CeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF-GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~-g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
+++.+|-+..|...+-+...-.....+.+...+..+++++|.. +.=..|-.....-+|+.++ ++ +.+... ..
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~--~e--~~l~~l---~g 259 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS--QE--TPLQDL---EG 259 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC--CC--cchhhh---hc
Confidence 6777787777877776654333333344556778899999983 3222222221122333322 21 111110 02
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ecCeEEEEeCCCCeEEEEeccCCc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.......+++.+.++.|- +-.....-..-|+..+ ..++...+.-..-+++++ ++|.|..|-.-..--+..+..+|.
T Consensus 260 H~~RVs~VafHPsG~~L~-TasfD~tWRlWD~~tk--~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLG-TASFDSTWRLWDLETK--SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred chhhheeeeecCCCceee-ecccccchhhcccccc--hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 334456677776544433 3322222222232221 112111111233467777 567776664322212234666777
Q ss_pred ceEEEecccCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCC--CcccccCceeEEeecCCeEE
Q psy14257 571 DVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDN--KTCQVADSQFIIFSRPREIR 648 (841)
Q Consensus 571 ~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~--~tC~~~~~~~l~~~~~~~i~ 648 (841)
.+.++...+...+++. --|.||.|.+-+ .||. |+
T Consensus 337 ~im~L~gH~k~I~~V~------------------------------fsPNGy~lATgs~Dnt~k--------------VW 372 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVA------------------------------FSPNGYHLATGSSDNTCK--------------VW 372 (459)
T ss_pred EEEEecccccceeeEe------------------------------ECCCceEEeecCCCCcEE--------------Ee
Confidence 7777665443333321 124455554321 1222 34
Q ss_pred EEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCce
Q psy14257 649 GVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQ 728 (841)
Q Consensus 649 ~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (841)
.+.+....+ ++| - -..-+..|-|+|..+....+-...++++...-.+..
T Consensus 373 DLR~r~~ly-~ip---A-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~-------------------------- 421 (459)
T KOG0272|consen 373 DLRMRSELY-TIP---A-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS-------------------------- 421 (459)
T ss_pred eecccccce-ecc---c-ccchhhheEecccCCeEEEEcccCcceeeecCCCcc--------------------------
Confidence 333322211 111 1 112356788999888888888777888777665544
Q ss_pred EEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEE
Q psy14257 729 IQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVV 766 (841)
Q Consensus 729 ~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v 766 (841)
....++..-+.+.+++|.+.+. ...| ....++|..
T Consensus 422 ~~ksLaGHe~kV~s~Dis~d~~-~i~t--~s~DRT~KL 456 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLDISPDSQ-AIAT--SSFDRTIKL 456 (459)
T ss_pred cchhhcCCccceEEEEeccCCc-eEEE--eccCceeee
Confidence 3334445556667777776654 3334 123445543
No 211
>KOG1226|consensus
Probab=61.26 E-value=30 Score=40.93 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=7.2
Q ss_pred CCCCCCCCccc
Q psy14257 121 ACFNGEDEMFC 131 (841)
Q Consensus 121 ~C~~g~de~~C 131 (841)
.|..|+.+..|
T Consensus 569 vC~~GwtG~~C 579 (783)
T KOG1226|consen 569 VCNPGWTGSAC 579 (783)
T ss_pred EcCCCCccCCC
Confidence 56677766665
No 212
>smart00284 OLF Olfactomedin-like domains.
Probab=60.97 E-value=2.2e+02 Score=29.79 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=75.8
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeee--eecCCCccccCCCCCCccccccce---EEEEecCCCcEEEEccCCce
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLE--VLGSDSRVGIPNCRPEDNLWIGKN---LYWVESNLDQIEVAKLSGQF 434 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~--~~~~~~~~~i~~~~~~avdw~~~~---LY~tD~~~~~I~v~~~~G~~ 434 (841)
++.||+--.....|.|++|..........++ .......-.-....-+++.....- ||-|....+.|.+.+|+-..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence 5899998888899999999887664332221 111100000000001122222233 44456667889999998654
Q ss_pred EEEEec--CCCCCce---eEEEcCCCCeEEEEecC-CCCCeEE-EecCCCCCcEEEEEecccCCCCCCceeEEEeccCCE
Q psy14257 435 RRTLIA--GDMESPR---AIALDPRFGLLFWTDWD-SKAPRIE-RCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTR 507 (841)
Q Consensus 435 ~~~l~~--~~l~~P~---giavd~~~g~Ly~td~~-~~~~~I~-r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~ 507 (841)
..+.-. ....++. +..| =|.||.++.. ....+|. ..+...+... .+...+ ......-..|.-.|.+++
T Consensus 163 L~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~-~~~i~f-~n~y~~~s~l~YNP~d~~ 237 (255)
T smart00284 163 LTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEG-HLDIPF-ENMYEYISMLDYNPNDRK 237 (255)
T ss_pred ceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccc-eeeeee-ccccccceeceeCCCCCe
Confidence 443221 2232322 2333 3899999852 2233443 3444432222 121100 012233344777788899
Q ss_pred EEEEeCC
Q psy14257 508 IYWIDAK 514 (841)
Q Consensus 508 LYw~d~~ 514 (841)
||.=|.+
T Consensus 238 LY~wdng 244 (255)
T smart00284 238 LYAWNNG 244 (255)
T ss_pred EEEEeCC
Confidence 9987753
No 213
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=60.04 E-value=2.1e+02 Score=29.40 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=25.8
Q ss_pred cceeeecccccCCcceeEEEecCCCeEEEEEecCCc
Q psy14257 249 KNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNS 284 (841)
Q Consensus 249 ~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~ 284 (841)
...++|||.+..++ ||=. ...++||.++...|.
T Consensus 27 e~l~GID~Rpa~G~--LYgl-~~~g~lYtIn~~tG~ 59 (236)
T PF14339_consen 27 ESLVGIDFRPANGQ--LYGL-GSTGRLYTINPATGA 59 (236)
T ss_pred CeEEEEEeecCCCC--EEEE-eCCCcEEEEECCCCe
Confidence 45789999888877 9977 456889999876653
No 214
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.49 E-value=2.8e+02 Score=30.59 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=56.0
Q ss_pred CCeEEEEecCCCCCeEEEecC-CCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc-CCCeeEEEE
Q psy14257 455 FGLLFWTDWDSKAPRIERCSM-SGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY-DGKDHHVVL 532 (841)
Q Consensus 455 ~g~Ly~td~~~~~~~I~r~~l-dG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~-dG~~~~~i~ 532 (841)
+++||+.... +.|+..+. +|......-. .-..-.+.+++ ++++|+... .+.++.++. +|..+-...
T Consensus 65 ~~~v~v~~~~---g~v~a~d~~tG~~~W~~~~------~~~~~~~p~v~--~~~v~v~~~-~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADAD---GTVVALDAETGKRLWRVDL------DERLSGGVGAD--GGLVFVGTE-KGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCC---CeEEEEEccCCcEeeeecC------CCCcccceEEc--CCEEEEEcC-CCEEEEEECCCCcEeeeec
Confidence 4677777642 56777764 3432221111 01111345555 678887764 578888887 455443322
Q ss_pred cCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCcce
Q psy14257 533 SNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDV 572 (841)
Q Consensus 533 ~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~ 572 (841)
...... ...++.++.+|+.. ..+.|+.++..+|+.+
T Consensus 133 ~~~~~~---~~p~v~~~~v~v~~-~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 133 LSSEVL---SPPLVANGLVVVRT-NDGRLTALDAATGERL 168 (377)
T ss_pred cCceee---cCCEEECCEEEEEC-CCCeEEEEEcCCCcee
Confidence 111111 11234678888875 3577888888888754
No 215
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=59.47 E-value=2.2e+02 Score=29.44 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=42.1
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCC---CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMS---GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSI 518 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld---G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I 518 (841)
+..|++.|-..|.||+++.. -.||+...+ |...+.+-. +..-..|+-|.++-.||+...+.+.+
T Consensus 206 QTEG~VaDdEtG~LYIaeEd---vaiWK~~Aep~~G~~g~~idr-------~~d~~~LtdDvEGltiYy~pnGkGYL 272 (364)
T COG4247 206 QTEGMVADDETGFLYIAEED---VAIWKYEAEPNRGNTGRLIDR-------IKDLSYLTDDVEGLTIYYGPNGKGYL 272 (364)
T ss_pred cccceeeccccceEEEeecc---ceeeecccCCCCCCccchhhh-------hcCchhhcccccccEEEEcCCCcEEE
Confidence 56799999999999999854 578888764 334444422 22224566666666777766555544
No 216
>KOG4328|consensus
Probab=59.27 E-value=3e+02 Score=30.88 Aligned_cols=76 Identities=11% Similarity=0.039 Sum_probs=44.1
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
.+..+|+++|..-+++.|.......+||-..-=+..+..++.. ...-...+...+.+.+++|. +....+.|..++-
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst---~~HrrsV~sAyFSPs~gtl~-TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST---LPHRRSVNSAYFSPSGGTLL-TTCQDNEIRVFDS 398 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec---ccccceeeeeEEcCCCCceE-eeccCCceEEeec
Confidence 3788999999998888887654466777665322222112220 01112234555667777744 4444567777764
No 217
>KOG0281|consensus
Probab=58.56 E-value=1.1e+02 Score=32.83 Aligned_cols=209 Identities=15% Similarity=0.118 Sum_probs=113.5
Q ss_pred CCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCcc-EEEEeeeeecCCCccccCCCCC
Q psy14257 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER-TVSFNLEVLGSDSRVGIPNCRP 405 (841)
Q Consensus 327 ~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~-~~~~~~~~~~~~~~~~i~~~~~ 405 (841)
++.|..++.....-..+.... .-+-|.+++. +++.++.....+|..-+.+.+.. .+++.-- ...+++
T Consensus 216 DnTikiWD~n~~~c~~~L~GH--tGSVLCLqyd-~rviisGSSDsTvrvWDv~tge~l~tlihHc----eaVLhl----- 283 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGH--TGSVLCLQYD-ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC----EAVLHL----- 283 (499)
T ss_pred cCceEEeccccHHHHHhhhcC--CCcEEeeecc-ceEEEecCCCceEEEEeccCCchhhHHhhhc----ceeEEE-----
Confidence 345555554433222222222 2334566665 44888888888888888865432 2221100 000001
Q ss_pred CccccccceEEEEecCCCcEEEEccCCceE----EEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCC-CCc
Q psy14257 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFR----RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSG-EHR 480 (841)
Q Consensus 406 ~avdw~~~~LY~tD~~~~~I~v~~~~G~~~----~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG-~~~ 480 (841)
-+++.+-+|-+....|.|-+++...- ++++ +.....+-+.+| .. +.++..+ ...|..-+++- ...
T Consensus 284 ----rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--~k-yIVsASg--DRTikvW~~st~efv 353 (499)
T KOG0281|consen 284 ----RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--DK-YIVSASG--DRTIKVWSTSTCEFV 353 (499)
T ss_pred ----EEeCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc--cc-eEEEecC--CceEEEEeccceeee
Confidence 01255667777788898888876432 2222 233334444444 33 4455555 44555555542 222
Q ss_pred EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeCCCCe
Q psy14257 481 SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560 (841)
Q Consensus 481 ~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~ 560 (841)
+++. ..-.|||--..++||.++-+..+.|...+.....--.++++++.|-. -|- |++.=.++-.+.++
T Consensus 354 Rtl~---------gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR--ciR-Fd~krIVSGaYDGk 421 (499)
T KOG0281|consen 354 RTLN---------GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIR-FDNKRIVSGAYDGK 421 (499)
T ss_pred hhhh---------cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh--hee-ecCceeeeccccce
Confidence 3332 23478888778999999998888999998875544444555444421 222 55555566666677
Q ss_pred EEEEeccCC
Q psy14257 561 VIRANKWNG 569 (841)
Q Consensus 561 i~~~~~~~g 569 (841)
|...+...+
T Consensus 422 ikvWdl~aa 430 (499)
T KOG0281|consen 422 IKVWDLQAA 430 (499)
T ss_pred EEEEecccc
Confidence 766664433
No 218
>KOG0310|consensus
Probab=58.29 E-value=2.7e+02 Score=31.35 Aligned_cols=103 Identities=9% Similarity=0.025 Sum_probs=71.0
Q ss_pred eEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeecCCc
Q psy14257 672 NNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQN 751 (841)
Q Consensus 672 ~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~ 751 (841)
..+-|-|..+.++.+-.....+.-.++++.. .+.-+.+.-+.++.+++-+.+++
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------------------v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------------------VQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE--------------------------EEEEecCCcceeEeeccccCCCe
Confidence 4566888889998887555555555555433 22234466788999999999999
Q ss_pred EEEEecCCCCCeEEEEecCCcc-eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCC
Q psy14257 752 MFIAVSSPTQSKIVVCNLEGEY-QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTK 810 (841)
Q Consensus 752 LYw~~~~~~~~~I~v~~l~g~~-~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~ 810 (841)
|++| ..-.++|+...+.-.. +..-++ =..|..-.+.-..|-++.+-.|+
T Consensus 168 ivvt--GsYDg~vrl~DtR~~~~~v~eln--------hg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 168 IVVT--GSYDGKVRLWDTRSLTSRVVELN--------HGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred EEEe--cCCCceEEEEEeccCCceeEEec--------CCCceeeEEEcCCCCEEEEcCCC
Confidence 9999 6678899998886653 322233 24666666655666777776665
No 219
>KOG3658|consensus
Probab=57.82 E-value=21 Score=41.45 Aligned_cols=84 Identities=25% Similarity=0.516 Sum_probs=44.8
Q ss_pred CCCCCCccC-----CCCCCC--CCCCCCC--CCcccC--CCCCeEecCCCCCCCC-CCCCCCC---CCccccc-ccccCC
Q psy14257 76 WSDETNCTH-----SGNRTI--SAPACEP--HEFDCQ--DVLRTCIPKALVCDGE-PACFNGE---DEMFCDE-KQCLRS 139 (841)
Q Consensus 76 ~~de~~C~~-----c~~~~~--c~~~C~~--~~~~C~--~~~~~Ci~~~~~Cdg~-~~C~~g~---de~~C~e-C~~~~~ 139 (841)
..+|..|.- |++.+. |.+.|+- ....|. +. ..| .....|+|. +.|+..- |...|++ =.+.++
T Consensus 498 ~~~~k~C~lk~gaqCSpsqgpCC~~~Cqf~~~~~kc~~~d~-~~C-~~~s~CnG~~aeCP~s~~~~d~t~C~~~~~C~~G 575 (764)
T KOG3658|consen 498 NLDEKPCTLKPGAQCSPSQGPCCTPNCQFHTSGEKCREADE-ATC-KGESTCNGFSAECPPSPPKPDGTVCNETGVCING 575 (764)
T ss_pred CCCCCCceeCCCCccCCCCCCccCCcceeecccCeeecccc-ccC-cCcccccCCccCCcCCCCCCCCCcccccceEeCC
Confidence 456666744 666654 5556642 223343 32 344 224457774 5576543 4444632 112356
Q ss_pred CCCCCcccCCCCcEEecCCCce
Q psy14257 140 DCHHDCYNTPEGFMCVCPRDMY 161 (841)
Q Consensus 140 ~C~~~C~~~~g~~~C~C~~Gy~ 161 (841)
.|...|--..|--.|.|.++-.
T Consensus 576 ~C~gs~c~~~glesC~c~~~~~ 597 (764)
T KOG3658|consen 576 KCIGSCCLMQGLESCFCTETDL 597 (764)
T ss_pred cCccHHHHhhCcceeeeccCCc
Confidence 7766555556777888877643
No 220
>KOG0291|consensus
Probab=56.27 E-value=4.3e+02 Score=31.75 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=60.3
Q ss_pred CCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEE
Q psy14257 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745 (841)
Q Consensus 666 ~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAv 745 (841)
+.-.+...|+.||...-|.-.+...-.|+..++..+. .-.++...-+.+.+|++
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--------------------------llDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--------------------------LLDILSGHEGPVSGLSF 486 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--------------------------eeehhcCCCCcceeeEE
Confidence 3334557899999888888888778889999988766 44566666777889999
Q ss_pred eecCCcEEEEecCCCCCeEEEEecCCc
Q psy14257 746 DWIAQNMFIAVSSPTQSKIVVCNLEGE 772 (841)
Q Consensus 746 D~~~~~LYw~~~~~~~~~I~v~~l~g~ 772 (841)
+|.+..||=.. -.++|+..++=.+
T Consensus 487 ~~~~~~LaS~S---WDkTVRiW~if~s 510 (893)
T KOG0291|consen 487 SPDGSLLASGS---WDKTVRIWDIFSS 510 (893)
T ss_pred ccccCeEEecc---ccceEEEEEeecc
Confidence 99999887663 5688998887555
No 221
>KOG0273|consensus
Probab=55.51 E-value=3.5e+02 Score=30.51 Aligned_cols=217 Identities=14% Similarity=0.063 Sum_probs=107.3
Q ss_pred CCCeEEeccCcc-ccccccccccEEEEeccccceeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEEeCCCC
Q psy14257 219 SSPFVIFSNRHE-LRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLS 297 (841)
Q Consensus 219 ~~p~ll~s~~~~-I~~~~~~~~~~~~l~~~~~~~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~ 297 (841)
...+|......+ ++-.+.++....++...-.-+.++.|.-.. . ...+-...+++...+...|. .+. .-.+.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G-~--yilS~~vD~ttilwd~~~g~---~~q--~f~~~ 317 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKG-T--YILSGGVDGTTILWDAHTGT---VKQ--QFEFH 317 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCC-C--EEEeccCCccEEEEeccCce---EEE--eeeec
Confidence 334444444333 333334444444444433446788876542 2 22333344555555443333 122 22344
Q ss_pred CccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEE
Q psy14257 298 TAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVR 377 (841)
Q Consensus 298 ~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ 377 (841)
+..++.|||.++.-+. ...+++.|+++..++......+...-+.-++|-+++. +.|.-+-...+++.--+
T Consensus 318 s~~~lDVdW~~~~~F~---------ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFA---------TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWS 387 (524)
T ss_pred cCCccceEEecCceEe---------ecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeee
Confidence 5557889998755443 3567889999999988776666666777888999875 44545544444443333
Q ss_pred --ecCCccEE-EEe---eeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccC-CceEEEEecCCCCCceeEE
Q psy14257 378 --VDGSERTV-SFN---LEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLS-GQFRRTLIAGDMESPRAIA 450 (841)
Q Consensus 378 --ldG~~~~~-~~~---~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~-G~~~~~l~~~~l~~P~gia 450 (841)
-++..... .+. .....+|-.-+. ..-|.+-.|.|+ .....+.+.+.. |....++.. .-....+++
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~------~n~~~~~~l~sa-s~dstV~lwdv~~gv~i~~f~k-H~~pVysva 459 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVT------SNPNMNLMLASA-SFDSTVKLWDVESGVPIHTLMK-HQEPVYSVA 459 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCcc------CCCcCCceEEEe-ecCCeEEEEEccCCceeEeecc-CCCceEEEE
Confidence 22211100 000 000111110000 001122333333 344566666654 444444433 345568899
Q ss_pred EcCCCCeEEEE
Q psy14257 451 LDPRFGLLFWT 461 (841)
Q Consensus 451 vd~~~g~Ly~t 461 (841)
+.|...+|---
T Consensus 460 fS~~g~ylAsG 470 (524)
T KOG0273|consen 460 FSPNGRYLASG 470 (524)
T ss_pred ecCCCcEEEec
Confidence 99886665433
No 222
>PTZ00421 coronin; Provisional
Probab=54.23 E-value=4e+02 Score=30.86 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=63.7
Q ss_pred CCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccE-----EEEeeeeecCCCccccCCCCCCcccc--ccceEEEEecC
Q psy14257 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT-----VSFNLEVLGSDSRVGIPNCRPEDNLW--IGKNLYWVESN 421 (841)
Q Consensus 349 ~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~-----~~~~~~~~~~~~~~~i~~~~~~avdw--~~~~LY~tD~~ 421 (841)
..-.++++++..+.++++-...++|...++...... .+..+. +.... ...+.| ..+++.++-..
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~-------V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKK-------VGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCc-------EEEEEeCcCCCCEEEEEeC
Confidence 345678888744555566667788888877543210 111100 00000 012233 23467777667
Q ss_pred CCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCC
Q psy14257 422 LDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 422 ~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld 476 (841)
.+.|.+.++........+.........|+++|. |.++.+-.. .+.|...++.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs~--Dg~IrIwD~r 198 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTSK--DKKLNIIDPR 198 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEecC--CCEEEEEECC
Confidence 788999998754433333333455788999986 444454433 4566666664
No 223
>PHA02713 hypothetical protein; Provisional
Probab=54.06 E-value=2.7e+02 Score=32.84 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=71.9
Q ss_pred ccceEEEEecC------CCcEEEEccCCceEEEEecCCCCCce---eEEEcCCCCeEEEEecCC---CCCeEEEecCCCC
Q psy14257 411 IGKNLYWVESN------LDQIEVAKLSGQFRRTLIAGDMESPR---AIALDPRFGLLFWTDWDS---KAPRIERCSMSGE 478 (841)
Q Consensus 411 ~~~~LY~tD~~------~~~I~v~~~~G~~~~~l~~~~l~~P~---giavd~~~g~Ly~td~~~---~~~~I~r~~ldG~ 478 (841)
.++.||+.-.. ...++++++....-..+ ..+..|+ ++++ .+|.||+.-... ....+++.++.-.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~--~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL--PPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC--CCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 34888887542 23567777665433222 2344443 2333 368999874321 1245788887644
Q ss_pred CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCC-----------------------CCeEEEEEcCCCeeEEEEcCC
Q psy14257 479 HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK-----------------------SDSIHTVTYDGKDHHVVLSNH 535 (841)
Q Consensus 479 ~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~-----------------------~~~I~~~~~dG~~~~~i~~~~ 535 (841)
....+... +.........+ .+++||+.-.. .+.++++++....-..+....
T Consensus 378 ~W~~~~~m---p~~r~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~ 451 (557)
T PHA02713 378 KWKMLPDM---PIALSSYGMCV---LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW 451 (557)
T ss_pred eEEECCCC---CcccccccEEE---ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence 33332210 01111222233 36899997432 246888888765444443221
Q ss_pred CCCCcceEEEEecCeEEEEeC
Q psy14257 536 DSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 536 ~~l~~P~gla~~~~~lY~td~ 556 (841)
.-....++++.+|.||+.-.
T Consensus 452 -~~r~~~~~~~~~~~IYv~GG 471 (557)
T PHA02713 452 -TGTIRPGVVSHKDDIYVVCD 471 (557)
T ss_pred -cccccCcEEEECCEEEEEeC
Confidence 11223578889999999843
No 224
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=52.78 E-value=2.2e+02 Score=35.07 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCCceeEEEeccC-----CEEEEEe-----CCCCeEEEEEcCCCeeEEEEcCCCCCCcc
Q psy14257 492 RGAWPNGLTLDYQL-----TRIYWID-----AKSDSIHTVTYDGKDHHVVLSNHDSLTHP 541 (841)
Q Consensus 492 ~~~~P~glalD~~~-----~~LYw~d-----~~~~~I~~~~~dG~~~~~i~~~~~~l~~P 541 (841)
.+..|.|.++|+.+ +.+-++. ....+|..+++..+.+..++++. .|=||
T Consensus 545 ~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~-elwhp 603 (912)
T TIGR02171 545 AVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGD-ELWHP 603 (912)
T ss_pred hccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeeccc-ccccc
Confidence 45679999999764 2222221 11236777777777777777664 34455
No 225
>KOG1539|consensus
Probab=50.63 E-value=5.4e+02 Score=31.27 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCC-CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEE
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMS-GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVT 522 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ld-G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~ 522 (841)
....++++++-+++.|+--. .+.|.+++|. |-.|..+.... ..-....|||+|. .+++.++-...+-+.--+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S---~G~Id~fNmQSGi~r~sf~~~~---ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYS---KGTIDRFNMQSGIHRKSFGDSP---AHKGEVTGLAVDG-TNRLLVSAGADGILKFWD 521 (910)
T ss_pred cceEEEEEeccCceEEEecc---CCeEEEEEcccCeeecccccCc---cccCceeEEEecC-CCceEEEccCcceEEEEe
Confidence 45678999999888887553 5899999994 66666664311 1223458999995 455655554445444445
Q ss_pred cCCCe
Q psy14257 523 YDGKD 527 (841)
Q Consensus 523 ~dG~~ 527 (841)
+.+..
T Consensus 522 f~~k~ 526 (910)
T KOG1539|consen 522 FKKKV 526 (910)
T ss_pred cCCcc
Confidence 55443
No 226
>PHA02790 Kelch-like protein; Provisional
Probab=49.57 E-value=4.6e+02 Score=30.20 Aligned_cols=131 Identities=9% Similarity=0.034 Sum_probs=69.2
Q ss_pred ccceEEEEecC--CCcEEEEccCCceEEEEecCCCCCce-eEEEcCCCCeEEEEecCC-CCCeEEEecCCCCCcEEEEEe
Q psy14257 411 IGKNLYWVESN--LDQIEVAKLSGQFRRTLIAGDMESPR-AIALDPRFGLLFWTDWDS-KAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 411 ~~~~LY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~-giavd~~~g~Ly~td~~~-~~~~I~r~~ldG~~~~~i~~~ 486 (841)
.++.||+.-.. ...++++++....-..+ ..+..|+ +.++-..+|.||+.-... ....+++.+.....-+.+.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-- 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-- 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC--
Confidence 45899988653 24577776543222211 2344444 222222468999874321 1245777766533322221
Q ss_pred cccCCCCCCce---eEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEEEEeC
Q psy14257 487 DLLTSRGAWPN---GLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDW 556 (841)
Q Consensus 487 ~~~~~~~~~P~---glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY~td~ 556 (841)
.+..|. ++++ .+++||+.- +..++++++...-+.+.... .-..-.++++.+|.||+.-.
T Consensus 393 -----~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~-~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 393 -----STYYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPI-YPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred -----CCCCccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCC-CCccccEEEEECCEEEEECC
Confidence 222221 2222 468999875 35778888654444333211 11123578889999999754
No 227
>KOG0272|consensus
Probab=48.77 E-value=4.2e+02 Score=29.46 Aligned_cols=250 Identities=11% Similarity=0.060 Sum_probs=122.4
Q ss_pred eEEEecCCCeEEEEEecCCcccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCCCCEEEEccCCCcccccc
Q psy14257 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLV 344 (841)
Q Consensus 265 lyw~d~~~~~I~~~~~~~~~~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~~~I~~~~~dG~~~~~l~ 344 (841)
+..|-.-.|...+-+.... .....+........++.+.|...++-|. +-..+|.+.-++.+++....-.
T Consensus 189 ~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~la--------t~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLA--------TASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred eEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCcccee--------eeccCCceeeeccCCCcchhhh
Confidence 6666666665554443322 1222333334455556666652122221 1234667777777765333333
Q ss_pred ccCcCCCceEEEEccCCEEEEEeCC-CCeEEEEEe-------cCCccEEEEeeeeecCCCccccCCCCCCccccccceEE
Q psy14257 345 TKNIQWPSSLVIDYNQDILYWCDSH-LNTVESVRV-------DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLY 416 (841)
Q Consensus 345 ~~~~~~P~glavD~~~~~lYwaD~~-~~~I~~~~l-------dG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY 416 (841)
.....+-.-+++.+.++.|-=+-.. .=+|+-+.. .|....+ +.. .+..+ |.|-
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v-~~i-af~~D-----------------GSL~ 318 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV-FSI-AFQPD-----------------GSLA 318 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc-cee-EecCC-----------------Ccee
Confidence 4455677778888776666443321 111111110 1111110 100 01111 3343
Q ss_pred EEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCc
Q psy14257 417 WVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWP 496 (841)
Q Consensus 417 ~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P 496 (841)
.|-.....-.+-++.......++.+.+....+++++|+ ||..-|-.+.+.-+|+...+.-...++.. .-...
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipA-------H~nlV 390 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPA-------HSNLV 390 (459)
T ss_pred eccCccchhheeecccCcEEEEecccccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceeccc-------ccchh
Confidence 33322222223444333333344556778889999986 88888876655667777776544222222 22345
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCC-CeeEEEEcCCCCCCcceEEEEec-CeEEEEe
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDG-KDHHVVLSNHDSLTHPFAIALFE-NHVYWTD 555 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG-~~~~~i~~~~~~l~~P~gla~~~-~~lY~td 555 (841)
+.+-+++..+...++-.+.+.+..-...+ +-.+++.... ..-+++++.. +....|-
T Consensus 391 S~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe---~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 391 SQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE---GKVISLDISPDSQAIATS 448 (459)
T ss_pred hheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc---cceEEEEeccCCceEEEe
Confidence 66777776777777776666665554433 3444443322 3346666643 3333443
No 228
>PRK13616 lipoprotein LpqB; Provisional
Probab=48.66 E-value=4.5e+02 Score=31.28 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=46.0
Q ss_pred CcceeEEeecCCcEEEEecCCCCCeEEE---EecCCcceEE-----EEcCCCCCCCcCCC-ceEEEEeCCCCeEEEEecC
Q psy14257 739 HPSGLAIDWIAQNMFIAVSSPTQSKIVV---CNLEGEYQTT-----ILSNESNDTSTLSK-ISSIAVWPVKGKMFWSNVT 809 (841)
Q Consensus 739 ~p~glAvD~~~~~LYw~~~~~~~~~I~v---~~l~g~~~~~-----~~~~~~~~~~~l~~-p~~iavd~~~g~lyw~d~~ 809 (841)
.+..|++.+.+.+|.++. .++|.+ .+.++..+++ +..+ +.. +..++= -..+.|+....+
T Consensus 449 ~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~-------l~~~~~~l~W-~~~~~L~V~~~~ 516 (591)
T PRK13616 449 PISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPG-------LGDTAVSLDW-RTGDSLVVGRSD 516 (591)
T ss_pred CcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecc-------cCCccccceE-ecCCEEEEEecC
Confidence 588888888899888873 256776 4543333322 2222 333 454442 233456665444
Q ss_pred CCcceEEEEecCCCceEEE
Q psy14257 810 KQVVTIEMAFMDGTKRETV 828 (841)
Q Consensus 810 ~~~~~I~~~~~dG~~~~~l 828 (841)
.+ ..+++.++||+..+.+
T Consensus 517 ~~-~~v~~v~vDG~~~~~~ 534 (591)
T PRK13616 517 PE-HPVWYVNLDGSNSDAL 534 (591)
T ss_pred CC-CceEEEecCCcccccc
Confidence 33 4589999999987753
No 229
>KOG0319|consensus
Probab=48.31 E-value=5.5e+02 Score=30.69 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=60.7
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 443 l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
...-.++++.|++.+||.+-.+ .-+....+.-. -.+.... ..-.....+++|+.+ .|.-+-..-+++.+-
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs---~llrv~~L~tgk~irswKa-----~He~Pvi~ma~~~~g-~LlAtggaD~~v~VW 132 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRS---QLLRVWSLPTGKLIRSWKA-----IHEAPVITMAFDPTG-TLLATGGADGRVKVW 132 (775)
T ss_pred hhhhheeeecCCccEEEEeecc---ceEEEEEcccchHhHhHhh-----ccCCCeEEEEEcCCC-ceEEeccccceEEEE
Confidence 4456789999998888877643 33444444322 1111110 011223478899755 444333345688888
Q ss_pred EcCCCeeEEEEcCCCCCCcceE-EEEecCeEE---EEeCCCCeEEEEecc
Q psy14257 522 TYDGKDHHVVLSNHDSLTHPFA-IALFENHVY---WTDWRTNSVIRANKW 567 (841)
Q Consensus 522 ~~dG~~~~~i~~~~~~l~~P~g-la~~~~~lY---~td~~~~~i~~~~~~ 567 (841)
++.+.....-+.+. +.+.. +.+.....| .+-...+.++..|..
T Consensus 133 di~~~~~th~fkG~---gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 133 DIKNGYCTHSFKGH---GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred EeeCCEEEEEecCC---CceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 99888776666552 23333 333445555 333344555555543
No 230
>KOG0310|consensus
Probab=47.57 E-value=4.6e+02 Score=29.62 Aligned_cols=147 Identities=10% Similarity=0.052 Sum_probs=79.0
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR 492 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~ 492 (841)
|+|.-+-...|.|.++++..+...-.+...-....-+-+.|..+.++.+-.. ...+.--++++.. +.... ...
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD--d~v~k~~d~s~a~--v~~~l---~~h 152 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD--DKVVKYWDLSTAY--VQAEL---SGH 152 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC--CceEEEEEcCCcE--EEEEe---cCC
Confidence 6666666677888888854422111112222223455667777777777544 2233333333332 22111 022
Q ss_pred CCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcce--EEEEecCeEEEEeCCCCeEEEEeccCCc
Q psy14257 493 GAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPF--AIALFENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 493 ~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~--gla~~~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
-.+....++-+.++.|.++-.+.+.|...+.....-. +++-+ -..|. -+++-.|.+..+-. .+.|..++..+|.
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-v~eln--hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-VVELN--HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGG 228 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-eEEec--CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCc
Confidence 2344566777788999999999999988887655322 22211 12343 23445667777653 3456556655443
No 231
>KOG0279|consensus
Probab=47.31 E-value=3.6e+02 Score=28.33 Aligned_cols=143 Identities=8% Similarity=-0.020 Sum_probs=79.9
Q ss_pred EEecCCCcEEEEccCCceEEEEecCC-CCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCC
Q psy14257 417 WVESNLDQIEVAKLSGQFRRTLIAGD-MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495 (841)
Q Consensus 417 ~tD~~~~~I~v~~~~G~~~~~l~~~~-l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~ 495 (841)
++-+...+|...+.-|.-.-++..+. -....-+.+.|.....|+...+. ...+..=++++-..+.... ..-..
T Consensus 121 vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~-DktvKvWnl~~~~l~~~~~-----gh~~~ 194 (315)
T KOG0279|consen 121 VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASW-DKTVKVWNLRNCQLRTTFI-----GHSGY 194 (315)
T ss_pred ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccC-CceEEEEccCCcchhhccc-----ccccc
Confidence 33444456666666666555555443 45566778888765555555441 3455555666543332222 34456
Q ss_pred ceeEEEeccCCEEEEEeCCCCeEEEEEcCCCee-EEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEeccCCc
Q psy14257 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH-HVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~-~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~~g~ 570 (841)
-+.+++.+ .|.|.-+-.+.+.++..+++-+.. ..+-. ...-.++++..++.+..-....+|.-.+..++.
T Consensus 195 v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~a----~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 195 VNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLEA----FDIVNSLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred EEEEEECC-CCCEEecCCCCceEEEEEccCCceeEeccC----CCeEeeEEecCCceeEeeccCCceEEEeccchh
Confidence 68899986 466776666677888888875433 22211 222345555555544444444556555554443
No 232
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=45.85 E-value=5.5e+02 Score=30.03 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=14.0
Q ss_pred eEEEEccCCEEEEEeCC
Q psy14257 353 SLVIDYNQDILYWCDSH 369 (841)
Q Consensus 353 glavD~~~~~lYwaD~~ 369 (841)
.+++|++.+.|||--.+
T Consensus 238 ~~s~D~~~~lvy~~tGn 254 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGN 254 (527)
T ss_pred ceeEcCCCCeEEEeCCC
Confidence 46999999999997643
No 233
>KOG1446|consensus
Probab=45.70 E-value=4e+02 Score=28.37 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=52.0
Q ss_pred CCCcEEEEccC----CceEEEEec-CCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec-CCCCCcEEEEEecccCCCCC
Q psy14257 421 NLDQIEVAKLS----GQFRRTLIA-GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS-MSGEHRSVIVRVDLLTSRGA 494 (841)
Q Consensus 421 ~~~~I~v~~~~----G~~~~~l~~-~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~-ldG~~~~~i~~~~~~~~~~~ 494 (841)
.++.|..+++. |.+....+. ....+=.+|.+.+.+.+|-++... +.|+..+ .+|+-...+.. .+....
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~---s~~~~lDAf~G~~~~tfs~---~~~~~~ 233 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA---SFIYLLDAFDGTVKSTFSG---YPNAGN 233 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC---CcEEEEEccCCcEeeeEee---ccCCCC
Confidence 33355555542 333333332 234455678888887777777643 4454444 36764443332 112334
Q ss_pred CceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 495 WPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 495 ~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
.|-+-++-|+++.+.- -...++|...++...
T Consensus 234 ~~~~a~ftPds~Fvl~-gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 234 LPLSATFTPDSKFVLS-GSDDGTIHVWNLETG 264 (311)
T ss_pred cceeEEECCCCcEEEE-ecCCCcEEEEEcCCC
Confidence 4555556666555553 344567777776543
No 234
>KOG1836|consensus
Probab=44.82 E-value=36 Score=44.95 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=33.5
Q ss_pred CCCCCCCCCCccCCCCCCC------------CCCCCCCCCcccCCCCCeEecCCCCCCCC-CCCCCCC
Q psy14257 72 DCTDWSDETNCTHSGNRTI------------SAPACEPHEFDCQDVLRTCIPKALVCDGE-PACFNGE 126 (841)
Q Consensus 72 dC~~~~de~~C~~c~~~~~------------c~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~-~~C~~g~ 126 (841)
+|+.++-...|..|.+.-+ |+-.|.-+.-.|...++.|+-...++++. ..|.+|+
T Consensus 698 ~C~~g~tG~~Ce~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~Gf 765 (1705)
T KOG1836|consen 698 TCPVGYTGQFCESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGF 765 (1705)
T ss_pred cCCCCcccchhhhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCC
Confidence 5777777777777744421 12233333567876668887555555554 3589987
No 235
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=44.50 E-value=24 Score=23.85 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=11.3
Q ss_pred cCCCCCeEecCCCCCCCCCCCCCCCCC
Q psy14257 102 CQDVLRTCIPKALVCDGEPACFNGEDE 128 (841)
Q Consensus 102 C~~~~~~Ci~~~~~Cdg~~~C~~g~de 128 (841)
|.+. ++|+....+| .|.+||.+
T Consensus 8 C~~~-G~C~~~~g~C----~C~~g~~G 29 (32)
T PF07974_consen 8 CSGH-GTCVSPCGRC----VCDSGYTG 29 (32)
T ss_pred cCCC-CEEeCCCCEE----ECCCCCcC
Confidence 4444 5555554444 55555544
No 236
>KOG2111|consensus
Probab=44.42 E-value=4.3e+02 Score=28.33 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=92.7
Q ss_pred CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEe
Q psy14257 360 QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI 439 (841)
Q Consensus 360 ~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~ 439 (841)
++.|.|-|.....|....+.+.-+.+-+. .++|-++- .++|+|+......+..-.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~-----------------------r~riVvvl--~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR-----------------------RDRIVVVL--ENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc-----------------------CCeEEEEe--cCeEEEEEcCCChhheee
Confidence 34555666666666665555543333221 13444333 257777776533222222
Q ss_pred cCCCCCceeE-EEcCCCCeEEEEecCCCCCeEEEecCCCCCc--EEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC
Q psy14257 440 AGDMESPRAI-ALDPRFGLLFWTDWDSKAPRIERCSMSGEHR--SVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516 (841)
Q Consensus 440 ~~~l~~P~gi-avd~~~g~Ly~td~~~~~~~I~r~~ldG~~~--~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~ 516 (841)
-+...+|+|+ ++.|....-+.+=.+...++|..+++.-... ..++. .......-++|... |.+.-+-+..+
T Consensus 130 ~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-----AH~s~Iacv~Ln~~-Gt~vATaStkG 203 (346)
T KOG2111|consen 130 IETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-----AHDSDIACVALNLQ-GTLVATASTKG 203 (346)
T ss_pred eecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-----cccCceeEEEEcCC-ccEEEEeccCc
Confidence 2345679886 4566666667776666678999999876655 23443 23344466788754 55554555455
Q ss_pred e-EEEEEc-CCCeeEEEEcCCCCCCcceEEEEecCeEEEE-eCCCCeEEEE
Q psy14257 517 S-IHTVTY-DGKDHHVVLSNHDSLTHPFAIALFENHVYWT-DWRTNSVIRA 564 (841)
Q Consensus 517 ~-I~~~~~-dG~~~~~i~~~~~~l~~P~gla~~~~~lY~t-d~~~~~i~~~ 564 (841)
. |+.++. +|+.+..+..+.. -.+-+-|++..+..|.+ ....+.|...
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d-~A~iy~iaFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVD-RADIYCIAFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCc-hheEEEEEeCCCccEEEEEcCCCeEEEE
Confidence 4 444554 5666666655432 23446777754433332 2334444433
No 237
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=44.09 E-value=3.8e+02 Score=27.61 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=18.8
Q ss_pred ceEEEEccCCEEEEEeCCCCeEEEEEecCCc
Q psy14257 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSE 382 (841)
Q Consensus 352 ~glavD~~~~~lYwaD~~~~~I~~~~ldG~~ 382 (841)
-||.+-+.+++||=. ...++|+.++.....
T Consensus 30 ~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~ 59 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-GSTGRLYTINPATGA 59 (236)
T ss_pred EEEEeecCCCCEEEE-eCCCcEEEEECCCCe
Confidence 467777778888876 334556666655443
No 238
>KOG2048|consensus
Probab=43.91 E-value=6.1e+02 Score=29.97 Aligned_cols=137 Identities=10% Similarity=0.056 Sum_probs=81.6
Q ss_pred eeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeee-eeeeeeeecccccccccccCceEEEEeeCCCCCc
Q psy14257 662 TISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLV-VDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHP 740 (841)
Q Consensus 662 ~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p 740 (841)
.+.+....++..-+..|..+.|-+.-...-.|||++.++ .+.+. |+. +...+...
T Consensus 376 kl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~-----------------------~~~~~~~a 431 (691)
T KOG2048|consen 376 KLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDD-----------------------VPLALLDA 431 (691)
T ss_pred eeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEecc-----------------------chhhhccc
Confidence 445566677777788999999999988888999999987 42111 110 00111122
Q ss_pred ceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEEec
Q psy14257 741 SGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFM 820 (841)
Q Consensus 741 ~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~~~ 820 (841)
..|.+--...+||.+. .....++.+.+++...+.+..-. +. +......-|++.|...|+-.+..-+ -|...++
T Consensus 432 ~~i~ftid~~k~~~~s--~~~~~le~~el~~ps~kel~~~~-~~-~~~~~I~~l~~SsdG~yiaa~~t~g---~I~v~nl 504 (691)
T KOG2048|consen 432 SAISFTIDKNKLFLVS--KNIFSLEEFELETPSFKELKSIQ-SQ-AKCPSISRLVVSSDGNYIAAISTRG---QIFVYNL 504 (691)
T ss_pred eeeEEEecCceEEEEe--cccceeEEEEecCcchhhhhccc-cc-cCCCcceeEEEcCCCCEEEEEeccc---eEEEEEc
Confidence 2232222255666662 34566888888877665555421 11 2244566778888877777777443 3777766
Q ss_pred CCCceEEEe
Q psy14257 821 DGTKRETVV 829 (841)
Q Consensus 821 dG~~~~~l~ 829 (841)
.+..-.-|.
T Consensus 505 ~~~~~~~l~ 513 (691)
T KOG2048|consen 505 ETLESHLLK 513 (691)
T ss_pred ccceeecch
Confidence 666555444
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=42.39 E-value=3.5e+02 Score=26.76 Aligned_cols=108 Identities=7% Similarity=0.037 Sum_probs=65.2
Q ss_pred ecCCCCCceEEEEecCCCEEEEEECC-CCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcce
Q psy14257 664 SIPQVFSPNNLNFDAANKKIYWTDQE-YNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSG 742 (841)
Q Consensus 664 ~~~~~~~~~~v~~d~~~~~iyw~d~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~g 742 (841)
.+..-..+.++++.|.++++.++... ...|.-.++.+.. +..-.-...+.
T Consensus 55 ~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~-----------------------------i~~~~~~~~n~ 105 (194)
T PF08662_consen 55 ELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKK-----------------------------IFSFGTQPRNT 105 (194)
T ss_pred eccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccE-----------------------------eEeecCCCceE
Confidence 33333447899999999998877532 2345554444322 22222345567
Q ss_pred eEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEec
Q psy14257 743 LAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNV 808 (841)
Q Consensus 743 lAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~ 808 (841)
|+..|.++.|-.+..+...+.|++.+.+. ...+...+ -.....++-+|...+|--+..
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~------~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFE------HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeeccc------cCcEEEEEEcCCCCEEEEEEe
Confidence 89999998888884333346789988873 22333321 235678888887666555443
No 240
>KOG0650|consensus
Probab=41.00 E-value=6.5e+02 Score=29.44 Aligned_cols=108 Identities=11% Similarity=0.150 Sum_probs=66.3
Q ss_pred cccccceEEEE----ecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEE
Q psy14257 408 NLWIGKNLYWV----ESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSV 482 (841)
Q Consensus 408 vdw~~~~LY~t----D~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~ 482 (841)
+.|-.+-=|++ +..+.+|.+..|.-.....-+...-..|..+.++|..-+||++... .|...++--. -.+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKk 602 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKK 602 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHH
Confidence 44444444443 2345566666665433322222233578899999999999999854 3444444321 1222
Q ss_pred EEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 483 IVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 483 i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
+. .+.+|-..|+|++.+.+|+.... .+++-.+|+|=+
T Consensus 603 L~------tg~kwiS~msihp~GDnli~gs~-d~k~~WfDldls 639 (733)
T KOG0650|consen 603 LL------TGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLDLS 639 (733)
T ss_pred Hh------cCCeeeeeeeecCCCCeEEEecC-CCeeEEEEcccC
Confidence 22 46788899999988888886654 567888888754
No 241
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=40.78 E-value=1.3e+02 Score=36.91 Aligned_cols=81 Identities=23% Similarity=0.467 Sum_probs=48.3
Q ss_pred CCCCCC--CCcccccccccCCCCCCCcccCCCCcEE-ecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEe
Q psy14257 121 ACFNGE--DEMFCDEKQCLRSDCHHDCYNTPEGFMC-VCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCT 197 (841)
Q Consensus 121 ~C~~g~--de~~C~eC~~~~~~C~~~C~~~~g~~~C-~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~ 197 (841)
.|.+|| ++..|-.|.. ..|. .|.+ .-.| .|..+|.+.+++++|.. +|.... +.=... .+..+|+
T Consensus 619 ~C~~GYY~d~~~C~~C~~--~~C~-tC~~---~~~C~~C~~~~~ls~~~~~C~~--~C~~~~---~~~~~~--~~~~~C~ 685 (800)
T PTZ00214 619 ACVDGYYADGDACLPCAT--PGCK-TCGH---ASFCTECAGELFVSLDGQSCLE--ECTGDK---VVGEVS--GGVRRCW 685 (800)
T ss_pred cCCCCcccCCCccccCCc--cccc-cccC---CCCcCcCCCCceecCcCCchhh--cCCCcc---cccccc--CCcceeE
Confidence 677776 4444544431 1231 3422 2245 58999999889888854 563111 000011 3456899
Q ss_pred ecCCeeecCCCCceEeC
Q psy14257 198 CHAGYELEPDMFTCKSK 214 (841)
Q Consensus 198 C~~G~~l~~d~~~C~~~ 214 (841)
|..||.+..++..|...
T Consensus 686 C~~g~~p~~~~~~C~~~ 702 (800)
T PTZ00214 686 CERGFLPALDRSGCVLP 702 (800)
T ss_pred ecCCcccccCCCccccc
Confidence 99999988888888654
No 242
>KOG1445|consensus
Probab=40.77 E-value=5.7e+02 Score=30.01 Aligned_cols=123 Identities=12% Similarity=0.009 Sum_probs=65.1
Q ss_pred eeeecccccCCcceeEE-EecCCCeEEEEEecCCc--ccceEEEEeCCCCCccceEEeeecCceeEEEeeecCCCCCCCC
Q psy14257 251 TIALDFYYTPTANMVFW-TDVIDDKIYNATLIGNS--LSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSD 327 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw-~d~~~~~I~~~~~~~~~--~~~~~~~~~~~l~~p~giavD~~~~~~y~~~td~~~~~~~~~~ 327 (841)
+..+.||.=+... |-+ +|-+.=+|+|....|.. ....+.++.....+...|.+.|+..++... .+.+
T Consensus 630 vtDl~WdPFD~~r-LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~---------asyd 699 (1012)
T KOG1445|consen 630 VTDLHWDPFDDER-LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV---------ASYD 699 (1012)
T ss_pred eeecccCCCChHH-eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh---------hhcc
Confidence 4555565543321 322 22222234555443322 012445666666677777777776555431 2345
Q ss_pred CCEEEEccCC-CccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEE
Q psy14257 328 GGIEKAGMHG-ENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTV 385 (841)
Q Consensus 328 ~~I~~~~~dG-~~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~ 385 (841)
-.|+.+++.. +.+..+ ...-..-.|||+.+.++++ -+--+.++|++++...+...+
T Consensus 700 ~Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdGr~~-AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRL-VGHTDQIFGIAWSPDGRRI-ATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred ceeeeeehhhhhhhhee-ccCcCceeEEEECCCCcce-eeeecCceEEEeCCCCCCCcc
Confidence 5788888653 333333 2334455688888776555 333466778877776655443
No 243
>PHA02790 Kelch-like protein; Provisional
Probab=40.35 E-value=5.8e+02 Score=29.37 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=65.8
Q ss_pred ceEEEEecCC-----CcEEEEccCCceEEEEecCCCCCcee-EEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 413 KNLYWVESNL-----DQIEVAKLSGQFRRTLIAGDMESPRA-IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 413 ~~LY~tD~~~-----~~I~v~~~~G~~~~~l~~~~l~~P~g-iavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
+.||++-... ..++++++....-..+ ..+..|+. .++-..+|.||..-.......+++.+..-.....+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~--~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~--- 346 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPI--PPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNM--- 346 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEEC--CCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEEC---
Confidence 6677765321 2455666554332222 23444441 11112368999885322235678877532222222
Q ss_pred cccCCCCCCce-eEEEeccCCEEEEEeCC---CCeEEEEEcCCCeeEEEEcCCCCCCcc---eEEEEecCeEEEEe
Q psy14257 487 DLLTSRGAWPN-GLTLDYQLTRIYWIDAK---SDSIHTVTYDGKDHHVVLSNHDSLTHP---FAIALFENHVYWTD 555 (841)
Q Consensus 487 ~~~~~~~~~P~-glalD~~~~~LYw~d~~---~~~I~~~~~dG~~~~~i~~~~~~l~~P---~gla~~~~~lY~td 555 (841)
..+..|. +.+.-..+++||+.-.. ...++++++....-+.+.. ++.| .++++.+++||+.-
T Consensus 347 ----~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~----m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 347 ----PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS----TYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred ----CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCC----CCCccccceEEEECCEEEEEC
Confidence 1222222 22222246999997432 2467888887654443322 2223 25667899999974
No 244
>KOG2055|consensus
Probab=39.81 E-value=6e+02 Score=28.68 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeee-eee--e--eeeecccccccccccCceEE--------EEeeC
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLV-VDA--V--FEFYLTPLSKRSSIVGGQIQ--------LVVDA 735 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~-~~~--~--~~~~~~~~~~~~~~~~~~~~--------~i~~~ 735 (841)
..+.++.|+..+++||.+ .+++.|+..++....++.. +|. | ..+..++=+- -...|++.. ...+.
T Consensus 345 G~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhcc
Confidence 456788898777555554 4778999998876553221 110 0 0111111000 011122211 11111
Q ss_pred C-----------CCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEE
Q psy14257 736 G-----------ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMF 804 (841)
Q Consensus 736 ~-----------~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~ly 804 (841)
. ...+..|++...+..|-++. ....+.++.+.+.. .+++++=......+.+++.||..|..|+|-
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS-~~~knalrLVHvPS---~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIAS-RVKKNALRLVHVPS---CTVFSNFPTSNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhh-hccccceEEEeccc---eeeeccCCCCCCcccceEEEEecCCCceEE
Confidence 1 23456677777777777773 44556666665532 233332222233489999999999999998
Q ss_pred EEecCCC
Q psy14257 805 WSNVTKQ 811 (841)
Q Consensus 805 w~d~~~~ 811 (841)
+-.....
T Consensus 499 vGNe~gr 505 (514)
T KOG2055|consen 499 VGNEAGR 505 (514)
T ss_pred eecCCCc
Confidence 8776553
No 245
>KOG0649|consensus
Probab=39.24 E-value=4.5e+02 Score=27.11 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=55.2
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEeccCCc
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNGS 570 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~ 570 (841)
.....|.|-+|+.++.|+.+- +.+.|+.+++.....+..+.++. ..-..++.-+ .--..+-...++++..+..+++
T Consensus 113 evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHt--DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHT--DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCc--ceeeeeeecccCcceeecCCCccEEEEeccccc
Confidence 445668999999999999887 67899999997666655555542 2334444422 2223344566777777777888
Q ss_pred ceEEEe
Q psy14257 571 DVTLIQ 576 (841)
Q Consensus 571 ~~~~i~ 576 (841)
.+.+|.
T Consensus 190 ~v~~ie 195 (325)
T KOG0649|consen 190 HVSMIE 195 (325)
T ss_pred eeEEec
Confidence 777765
No 246
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=38.75 E-value=24 Score=24.85 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.3
Q ss_pred CCceeEEEeccCCEEEEEeC
Q psy14257 494 AWPNGLTLDYQLTRIYWIDA 513 (841)
Q Consensus 494 ~~P~glalD~~~~~LYw~d~ 513 (841)
..|++|++| .++.+|++-.
T Consensus 13 ~~~~~IavD-~~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVD-SNGNIYVTGY 31 (38)
T ss_pred eeEEEEEEC-CCCCEEEEEe
Confidence 468999999 5688998754
No 247
>KOG1445|consensus
Probab=38.03 E-value=1.1e+02 Score=35.36 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=74.3
Q ss_pred ecCCeEEEEecCCCCccccceee-cCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccc
Q psy14257 642 SRPREIRGVDLEHPYYHTIPTIS-IPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720 (841)
Q Consensus 642 ~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~ 720 (841)
.....|-.+.|..+..-...++| +-|-.++..+.+||....=.-+-...+.|+-..+....-+
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~---------------- 663 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP---------------- 663 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------
Confidence 33556776777655433222222 3344556777888876554444445666655555332200
Q ss_pred cccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc-ceEEEEcCCCCCCCcCCCceEEEEeCC
Q psy14257 721 RSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE-YQTTILSNESNDTSTLSKISSIAVWPV 799 (841)
Q Consensus 721 ~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~-~~~~~~~~~~~~~~~l~~p~~iavd~~ 799 (841)
-+--..+.++....+....|-+.+.+..+.-+. ....+|+..+|... .+-.+... -.+..+||-.|.
T Consensus 664 ---e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a--syd~Ti~lWDl~~~~~~~~l~gH-------tdqIf~~AWSpd 731 (1012)
T KOG1445|consen 664 ---ENEMTPEKILTIHGEKITSLRFHPLAADVLAVA--SYDSTIELWDLANAKLYSRLVGH-------TDQIFGIAWSPD 731 (1012)
T ss_pred ---cccCCcceeeecccceEEEEEecchhhhHhhhh--hccceeeeeehhhhhhhheeccC-------cCceeEEEECCC
Confidence 011125677788888889999999888887773 35678998887543 33333322 245555555544
No 248
>KOG0293|consensus
Probab=37.83 E-value=6.1e+02 Score=28.21 Aligned_cols=150 Identities=10% Similarity=0.086 Sum_probs=87.1
Q ss_pred EEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCC
Q psy14257 416 YWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495 (841)
Q Consensus 416 Y~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~ 495 (841)
+++-+....|...++||.....--.........||+.+++.+|+..... .+|.-.+......+.++. .-..
T Consensus 327 ~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d---~~i~l~~~e~~~dr~lis------e~~~ 397 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD---KKIRLYNREARVDRGLIS------EEQP 397 (519)
T ss_pred eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc---cceeeechhhhhhhcccc------ccCc
Confidence 4555555678888888875432221222445689999888888887743 566666665443332333 1223
Q ss_pred ceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEE-Eec---CeEEEEeCCCCeEEEEeccCCcc
Q psy14257 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIA-LFE---NHVYWTDWRTNSVIRANKWNGSD 571 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla-~~~---~~lY~td~~~~~i~~~~~~~g~~ 571 (841)
.+.+.|. .++++..+......|+.-|+.-. ..+..-.+.-..-|-|- .|+ +.+.-+-...+.|+-.++.+|+-
T Consensus 398 its~~iS-~d~k~~LvnL~~qei~LWDl~e~--~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 398 ITSFSIS-KDGKLALVNLQDQEIHLWDLEEN--KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred eeEEEEc-CCCcEEEEEcccCeeEEeecchh--hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 4677887 56888888888888888888722 11111100001112222 243 24555556677888888888877
Q ss_pred eEEEec
Q psy14257 572 VTLIQR 577 (841)
Q Consensus 572 ~~~i~~ 577 (841)
+.++..
T Consensus 475 l~~LsG 480 (519)
T KOG0293|consen 475 LAVLSG 480 (519)
T ss_pred eEeecC
Confidence 666653
No 249
>KOG2055|consensus
Probab=37.48 E-value=6.5e+02 Score=28.42 Aligned_cols=80 Identities=11% Similarity=0.214 Sum_probs=50.5
Q ss_pred ecCCCC-CceEEEEecCCCEEEEEEC-CCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcc
Q psy14257 664 SIPQVF-SPNNLNFDAANKKIYWTDQ-EYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPS 741 (841)
Q Consensus 664 ~~~~~~-~~~~v~~d~~~~~iyw~d~-~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 741 (841)
.+.|+. .+..+.|++..+-+-.+.. ..+.++-+.+-.-. |+..+.+ .+..++.|+
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T-------VFsNfP~----------------~n~~vg~vt 486 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT-------VFSNFPT----------------SNTKVGHVT 486 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee-------eeccCCC----------------CCCcccceE
Confidence 344443 3567888888777776653 34556666554322 3333311 134578899
Q ss_pred eeEEeecCCcEEEEecCCCCCeEEEEec
Q psy14257 742 GLAIDWIAQNMFIAVSSPTQSKIVVCNL 769 (841)
Q Consensus 742 glAvD~~~~~LYw~~~~~~~~~I~v~~l 769 (841)
.||+.+-++.|-+.+ ..+++.++.|
T Consensus 487 c~aFSP~sG~lAvGN---e~grv~l~kL 511 (514)
T KOG2055|consen 487 CMAFSPNSGYLAVGN---EAGRVHLFKL 511 (514)
T ss_pred EEEecCCCceEEeec---CCCceeeEee
Confidence 999999999888873 4667777665
No 250
>KOG0303|consensus
Probab=37.08 E-value=6.2e+02 Score=28.03 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=26.2
Q ss_pred ceEEEEecCCCcEEEEccCC-ceEEEE-ecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 413 KNLYWVESNLDQIEVAKLSG-QFRRTL-IAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G-~~~~~l-~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
|.++.|-....+|.+++... +....- ...+...++.|-+- +|.|+-|-..
T Consensus 185 Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~--~g~i~tTGfs 236 (472)
T KOG0303|consen 185 GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA--SGKIFTTGFS 236 (472)
T ss_pred CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec--cCceeeeccc
Confidence 55566666666777777643 222221 22344556666663 4556555443
No 251
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=36.74 E-value=5.1e+02 Score=26.98 Aligned_cols=105 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred ccceEEEEecCCCcEEEEccCCceEE-E-EecC-CCC----------CceeEEEcCCCCe--EEEEecCCCCCeEEEecC
Q psy14257 411 IGKNLYWVESNLDQIEVAKLSGQFRR-T-LIAG-DME----------SPRAIALDPRFGL--LFWTDWDSKAPRIERCSM 475 (841)
Q Consensus 411 ~~~~LY~tD~~~~~I~v~~~~G~~~~-~-l~~~-~l~----------~P~giavd~~~g~--Ly~td~~~~~~~I~r~~l 475 (841)
.+|.||+--..+..|.+++|..+... . .+.. ... .=..+|+|. +|. ||-+... .+.|..+.+
T Consensus 77 YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~--~g~ivvskl 153 (250)
T PF02191_consen 77 YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDN--NGNIVVSKL 153 (250)
T ss_pred ECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCC--CCcEEEEee
Confidence 45899999989999999999876544 2 2221 111 125799995 463 3333322 456888888
Q ss_pred CCCCcEEEEEecccCCCCCC---ceeEEEeccCCEEEEEeCCC---CeEE-EEEcC
Q psy14257 476 SGEHRSVIVRVDLLTSRGAW---PNGLTLDYQLTRIYWIDAKS---DSIH-TVTYD 524 (841)
Q Consensus 476 dG~~~~~i~~~~~~~~~~~~---P~glalD~~~~~LYw~d~~~---~~I~-~~~~d 524 (841)
|-....+.-... ..+.. -+.+-+- |.||.++... .+|. .+|+.
T Consensus 154 d~~tL~v~~tw~---T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~ 203 (250)
T PF02191_consen 154 DPETLSVEQTWN---TSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTY 203 (250)
T ss_pred CcccCceEEEEE---eccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECC
Confidence 766554443311 12222 2344443 8999998765 3443 44554
No 252
>KOG2110|consensus
Probab=35.93 E-value=6.2e+02 Score=27.72 Aligned_cols=82 Identities=17% Similarity=0.111 Sum_probs=50.3
Q ss_pred EEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEec-CCcceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecC
Q psy14257 731 LVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNL-EGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVT 809 (841)
Q Consensus 731 ~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l-~g~~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~ 809 (841)
..+.+.-+....|||++.+. |--|-| .+-.-|+|+.. +|+.-..+-.+ . ...+.++|+.+|...+|--+-..
T Consensus 167 ~~I~aH~~~lAalafs~~G~-llATAS-eKGTVIRVf~v~~G~kl~eFRRG--~---~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGT-LLATAS-EKGTVIRVFSVPEGQKLYEFRRG--T---YPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eEEEecCCceeEEEECCCCC-EEEEec-cCceEEEEEEcCCccEeeeeeCC--c---eeeEEEEEEECCCCCeEEEecCC
Confidence 34556777889999998875 445533 33345788876 44433333333 0 13577899999997766555443
Q ss_pred CCcceEEEEecCC
Q psy14257 810 KQVVTIEMAFMDG 822 (841)
Q Consensus 810 ~~~~~I~~~~~dG 822 (841)
. +|..++++-
T Consensus 240 e---TVHiFKL~~ 249 (391)
T KOG2110|consen 240 E---TVHIFKLEK 249 (391)
T ss_pred C---eEEEEEecc
Confidence 3 566666554
No 253
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.97 E-value=6e+02 Score=27.30 Aligned_cols=53 Identities=23% Similarity=0.230 Sum_probs=37.9
Q ss_pred cceEEEEe----cCCCcEEEEccCCceEEEE-ecCCCCCceeEEEcCCCCeEEEEecC
Q psy14257 412 GKNLYWVE----SNLDQIEVAKLSGQFRRTL-IAGDMESPRAIALDPRFGLLFWTDWD 464 (841)
Q Consensus 412 ~~~LY~tD----~~~~~I~v~~~~G~~~~~l-~~~~l~~P~giavd~~~g~Ly~td~~ 464 (841)
++.||.|+ .+.+.|-|.+....+.++- ....--.|..|.+.|+...|.+++-+
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 37888885 4577899999985554432 22223469999999987699999855
No 254
>KOG4258|consensus
Probab=34.82 E-value=41 Score=40.32 Aligned_cols=68 Identities=24% Similarity=0.518 Sum_probs=38.2
Q ss_pred cccCCCCcEE--ecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEe--ecCCeeecCCCCceEeC
Q psy14257 145 CYNTPEGFMC--VCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCT--CHAGYELEPDMFTCKSK 214 (841)
Q Consensus 145 C~~~~g~~~C--~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~--C~~G~~l~~d~~~C~~~ 214 (841)
|.+.-+-..| .|+++|.+..+ ..|....+|...+.++..-.... .....|. |+.||........|..-
T Consensus 255 Cr~~y~~G~CV~~Cp~~~Y~~e~-~RCvt~~~C~~l~~~~~~~i~G~-~~~~~Cv~~CPsGy~~N~~~~~C~~C 326 (1025)
T KOG4258|consen 255 CRGLYDDGVCVEACPPDYYLFEN-WRCVTREECALLHSLSNSVISGV-IHAGQCVAKCPSGYKRNSSSSECVKC 326 (1025)
T ss_pred hhccccCCceeccCCcchhhhcc-ceeccHHHHHHhcCcccccccce-eccccchhhCCCcceecCcccceecc
Confidence 3333333446 69999876544 37888888864333432111000 0123564 89999887766666543
No 255
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=34.56 E-value=5.2e+02 Score=26.48 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=66.4
Q ss_pred ceEEEEecCCCcEEEEcc--CCc-----eEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC------
Q psy14257 413 KNLYWVESNLDQIEVAKL--SGQ-----FRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH------ 479 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~--~G~-----~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~------ 479 (841)
+.||.+... .+++.+. .+. ..+.|...+..+=..|++|+. |.||-... .++|+|.......
T Consensus 45 g~lY~I~~~--~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~-G~LYaV~~---~G~lyR~~~~~~~~~~W~~ 118 (229)
T PF14517_consen 45 GRLYAIRND--GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPT-GVLYAVTP---DGKLYRHPRPTNGSDNWIG 118 (229)
T ss_dssp S-EEEEETT--EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TT-S-EEEEET---T-EEEEES---STT--HHH
T ss_pred ceEEEEECC--ceEEecCCccCcccccccCcccccCcccceeEEEecCC-ccEEEecc---ccceeeccCCCccCcchhh
Confidence 777877643 5555521 111 223444433445568999985 99997663 4788888873221
Q ss_pred --cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE-EcCCC-----eeEEEEcCCCCCCcceEEEE-ecCe
Q psy14257 480 --RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV-TYDGK-----DHHVVLSNHDSLTHPFAIAL-FENH 550 (841)
Q Consensus 480 --~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~-~~dG~-----~~~~i~~~~~~l~~P~gla~-~~~~ 550 (841)
.+.+.. ........|-.+ .++.||..+... ++++. .+++. ....++...+ ...+.-|.. -++.
T Consensus 119 ~~~~~iG~-----~GW~~f~~vfa~-~~GvLY~i~~dg-~~~~~~~p~~~~~~W~~~s~~v~~~g-w~~~~~i~~~~~g~ 190 (229)
T PF14517_consen 119 GSGKKIGG-----TGWNDFDAVFAG-PNGVLYAITPDG-RLYRRYRPDGGSDRWLSGSGLVGGGG-WDSFHFIFFSPDGN 190 (229)
T ss_dssp -HSEEEE------SSGGGEEEEEE--TTS-EEEEETTE--EEEE---SSTT--HHHH-EEEESSS-GGGEEEEEE-TTS-
T ss_pred ccceeccc-----CCCccceEEEeC-CCccEEEEcCCC-ceEEeCCCCCCCCccccccceeccCC-cccceEEeeCCCCc
Confidence 233333 455556777777 478999988644 55555 55543 2223333321 233445555 3568
Q ss_pred EEEEeCCCCeEEEE
Q psy14257 551 VYWTDWRTNSVIRA 564 (841)
Q Consensus 551 lY~td~~~~~i~~~ 564 (841)
||+. ..++.++|-
T Consensus 191 L~~V-~~~G~lyr~ 203 (229)
T PF14517_consen 191 LWAV-KSNGKLYRG 203 (229)
T ss_dssp EEEE--ETTEEEEE
T ss_pred EEEE-ecCCEEecc
Confidence 8877 445666544
No 256
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=33.72 E-value=1.9e+02 Score=27.38 Aligned_cols=73 Identities=16% Similarity=0.350 Sum_probs=48.4
Q ss_pred CCCcceeEEeecCCcEEEEecCCCCCeEEEE-ecCCcc--eEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcc
Q psy14257 737 ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVC-NLEGEY--QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVV 813 (841)
Q Consensus 737 ~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~-~l~g~~--~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~ 813 (841)
...|.+||+- .-++... ...+|.++ +|+++. ...+... ..+..||+.|+. ..-||.=....
T Consensus 33 ~~~p~si~lT--~~H~llL----~~~~l~~vn~L~~~vV~e~~~~~~-------~~~~~gl~~D~~-~~t~W~ys~~~-- 96 (147)
T PF05131_consen 33 SSPPLSIALT--EFHLLLL----YSDRLIAVNRLNNKVVFEESLLET-------GGKILGLCRDPS-SNTFWLYSSNS-- 96 (147)
T ss_pred CCCcceEEee--ceeeeEE----eCCEEEEEEecCCcEEEEEEeccC-------CcceeeEEEcCC-CCeEEEEeCCe--
Confidence 3448999997 3355555 12455554 577763 2333333 689999999996 45888888763
Q ss_pred eEEEEecCCCceE
Q psy14257 814 TIEMAFMDGTKRE 826 (841)
Q Consensus 814 ~I~~~~~dG~~~~ 826 (841)
|.+.......|.
T Consensus 97 -I~ei~i~~E~r~ 108 (147)
T PF05131_consen 97 -IFEIVINNEDRD 108 (147)
T ss_pred -eEEEEcCcchHH
Confidence 888877766654
No 257
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=32.97 E-value=2.5e+02 Score=34.58 Aligned_cols=96 Identities=13% Similarity=0.134 Sum_probs=60.3
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEE-ecCC--CCCceeEEEcCCCCeEEE-EecCC--CCCeEEEecCCC--CCcEEEE
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTL-IAGD--MESPRAIALDPRFGLLFW-TDWDS--KAPRIERCSMSG--EHRSVIV 484 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l-~~~~--l~~P~giavd~~~g~Ly~-td~~~--~~~~I~r~~ldG--~~~~~i~ 484 (841)
+-.|+.+ .+++|.++|.+|...+++ +... ..+| ++.|++.+|-+ +.... ..+.|++.+|+- +....+-
T Consensus 320 kiAfv~~-~~~~L~~~D~dG~n~~~ve~~~~~~i~sP---~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 320 KLAFRND-VTGNLAYIDYTKGASRAVEIEDTISVYHP---DISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred eEEEEEc-CCCeEEEEecCCCCceEEEecCCCceecC---cCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 5677777 445999999999888776 4432 2334 57788777776 54332 367899999964 4433332
Q ss_pred EecccCCCCCCceeEEEe-ccCCEEEEEeCCCCe
Q psy14257 485 RVDLLTSRGAWPNGLTLD-YQLTRIYWIDAKSDS 517 (841)
Q Consensus 485 ~~~~~~~~~~~P~glalD-~~~~~LYw~d~~~~~ 517 (841)
- +....|.==.+. -+.--+||+|+++++
T Consensus 396 v-----e~aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 396 V-----ENAAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred c-----ccccccceEecCCCCeEEEEEcCCCCCc
Confidence 2 344445544443 123478999988775
No 258
>KOG2139|consensus
Probab=31.96 E-value=7.2e+02 Score=27.26 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred CCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEec----CCCCCcEEEEEecccCCCCCCc
Q psy14257 421 NLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCS----MSGEHRSVIVRVDLLTSRGAWP 496 (841)
Q Consensus 421 ~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~----ldG~~~~~i~~~~~~~~~~~~P 496 (841)
+...|.+-+.+.....-+...++..-.-|-..|++.+||-+... .++|.- +=-+.+.++.. ..-
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d----avfrlw~e~q~wt~erw~lgs--------grv 283 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD----AVFRLWQENQSWTKERWILGS--------GRV 283 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc----ceeeeehhcccceecceeccC--------Cce
Confidence 34466666666544444443333334445667776666665533 233332 11122222221 133
Q ss_pred eeEEEeccCCEEEEEeCCCCeEEEEEcCCCee
Q psy14257 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528 (841)
Q Consensus 497 ~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~ 528 (841)
.+-..++.+.+|.++-.+..+|+++.+++...
T Consensus 284 qtacWspcGsfLLf~~sgsp~lysl~f~~~~~ 315 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGSPRLYSLTFDGEDS 315 (445)
T ss_pred eeeeecCCCCEEEEEEcCCceEEEEeecCCCc
Confidence 45557888889999988888999998887643
No 259
>KOG2110|consensus
Probab=31.76 E-value=7.2e+02 Score=27.23 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=60.0
Q ss_pred cCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC--CCCCcEEEEEecccCCCCCCce
Q psy14257 420 SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM--SGEHRSVIVRVDLLTSRGAWPN 497 (841)
Q Consensus 420 ~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l--dG~~~~~i~~~~~~~~~~~~P~ 497 (841)
...+.|.+++...-.....+...-..-..||+++. |.|.-|... .++|-|+-. +|+....+-.. .......
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~-G~llATASe--KGTVIRVf~v~~G~kl~eFRRG----~~~~~Iy 222 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPD-GTLLATASE--KGTVIRVFSVPEGQKLYEFRRG----TYPVSIY 222 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCC-CCEEEEecc--CceEEEEEEcCCccEeeeeeCC----ceeeEEE
Confidence 34678888887665444445444455678999986 777666655 677777664 44433333210 1122335
Q ss_pred eEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 498 GLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 498 glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
.|+++++...|- +-..++.|+.|.++-.
T Consensus 223 SL~Fs~ds~~L~-~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 223 SLSFSPDSQFLA-ASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEECCCCCeEE-EecCCCeEEEEEeccc
Confidence 688887666544 4455778888877654
No 260
>KOG2139|consensus
Probab=31.69 E-value=7.2e+02 Score=27.22 Aligned_cols=120 Identities=15% Similarity=0.111 Sum_probs=68.8
Q ss_pred CceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCc---------EEEEEecccC----C----CCCCceeEEEeccCCE
Q psy14257 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHR---------SVIVRVDLLT----S----RGAWPNGLTLDYQLTR 507 (841)
Q Consensus 445 ~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~---------~~i~~~~~~~----~----~~~~P~glalD~~~~~ 507 (841)
+..+-.-+|.+.+|.++-.+ ++.|++...++... .++...++.. . -...+.-||.|+.+.+
T Consensus 282 rvqtacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGey 359 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEY 359 (445)
T ss_pred ceeeeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCE
Confidence 44455667787888888877 78899988765422 2221111100 1 1346788999999999
Q ss_pred EEEEeCCCCeE-------EEEEcCCCeeEEEE-cCCCCCCcceEEEE----ecCeEEEEeCCCCeEEEEec
Q psy14257 508 IYWIDAKSDSI-------HTVTYDGKDHHVVL-SNHDSLTHPFAIAL----FENHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 508 LYw~d~~~~~I-------~~~~~dG~~~~~i~-~~~~~l~~P~gla~----~~~~lY~td~~~~~i~~~~~ 566 (841)
|-++--+.+.| .+++..-+....+. -+...-.+|..|.+ .++.|.-.-|.++++.++..
T Consensus 360 Lav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 360 LAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 98876554433 33332222221111 11112245766664 35777777788888876653
No 261
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=31.64 E-value=6.7e+02 Score=26.85 Aligned_cols=98 Identities=12% Similarity=-0.023 Sum_probs=52.6
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCC-cEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEE--E
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH-RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTV--T 522 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~-~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~--~ 522 (841)
+.+|+. .+|+|..+- .++|....++... ....... ..-. ....+...+++|++.|...+ |..+ +
T Consensus 91 V~ai~~--~~~~lv~~~----g~~l~v~~l~~~~~l~~~~~~----~~~~--~i~sl~~~~~~I~vgD~~~s-v~~~~~~ 157 (321)
T PF03178_consen 91 VTAICS--FNGRLVVAV----GNKLYVYDLDNSKTLLKKAFY----DSPF--YITSLSVFKNYILVGDAMKS-VSLLRYD 157 (321)
T ss_dssp EEEEEE--ETTEEEEEE----TTEEEEEEEETTSSEEEEEEE-----BSS--SEEEEEEETTEEEEEESSSS-EEEEEEE
T ss_pred ceEhhh--hCCEEEEee----cCEEEEEEccCcccchhhhee----cceE--EEEEEeccccEEEEEEcccC-EEEEEEE
Confidence 455555 478877766 4678888887766 3333321 1111 33445555789999998544 4544 4
Q ss_pred cCCCeeEEEEcCCCCCCcceEEEEe--cCeEEEEeCC
Q psy14257 523 YDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWR 557 (841)
Q Consensus 523 ~dG~~~~~i~~~~~~l~~P~gla~~--~~~lY~td~~ 557 (841)
.++.....+.... .-....++.+. ++.+..+|..
T Consensus 158 ~~~~~l~~va~d~-~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 158 EENNKLILVARDY-QPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp TTTE-EEEEEEES-S-BEEEEEEEE-SSSEEEEEETT
T ss_pred ccCCEEEEEEecC-CCccEEEEEEecCCcEEEEEcCC
Confidence 4344344444321 11223445443 3477777754
No 262
>KOG0289|consensus
Probab=31.30 E-value=7.9e+02 Score=27.57 Aligned_cols=121 Identities=13% Similarity=-0.003 Sum_probs=67.5
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
...+++.++|.+.||.|++.. ..-++.---+|+...++... ..--.-+..++.+ .+.||.+-...+.|...++
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d--~~w~Fsd~~~g~~lt~vs~~----~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASND--GTWAFSDISSGSQLTVVSDE----TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccceeeeeccCCcEEEEecCC--ceEEEEEccCCcEEEEEeec----cccceeEEeeEcC-CceEEeccCCCceEEEEEc
Confidence 345799999999999998844 22233333355555544431 1111235566764 5788888777778888887
Q ss_pred CCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEeccCCcceE
Q psy14257 524 DGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 524 dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
..... +..-++.-..-..|++.+ ||..++....+.|.-.+...-++..
T Consensus 377 ks~~~--~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 377 KSQTN--VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred CCccc--cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 65442 111111111235677744 5655665555667666654334333
No 263
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=30.53 E-value=1.8e+02 Score=21.03 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=23.0
Q ss_pred ceEEEEecCeEEEEeCCCCeEEEEeccCCcceEE
Q psy14257 541 PFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL 574 (841)
Q Consensus 541 P~gla~~~~~lY~td~~~~~i~~~~~~~g~~~~~ 574 (841)
..+|++.++++|++++.. .+..++..+..+..+
T Consensus 4 a~~v~v~g~yaYva~~~~-Gl~IvDISnPs~P~~ 36 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGNN-GLVIVDISNPSNPVL 36 (42)
T ss_pred EEEEEEECCEEEEEeCCC-CEEEEECCCCCCCEE
Confidence 467899999999998764 455666555544443
No 264
>PLN00181 protein SPA1-RELATED; Provisional
Probab=29.78 E-value=1.1e+03 Score=28.95 Aligned_cols=292 Identities=7% Similarity=0.038 Sum_probs=0.0
Q ss_pred eEEEEccCCEEEEEeCCCCeEEEEEecC---CccEEEEeeeeecCCCccccCCCCCCcccccc--ceEEEEecCCCcEEE
Q psy14257 353 SLVIDYNQDILYWCDSHLNTVESVRVDG---SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG--KNLYWVESNLDQIEV 427 (841)
Q Consensus 353 glavD~~~~~lYwaD~~~~~I~~~~ldG---~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~--~~LY~tD~~~~~I~v 427 (841)
+|++++.++.|..+. ..+.|...++.. ...........+.....+ .++.|.. +.+..+-...+.|.+
T Consensus 488 ~i~fs~dg~~latgg-~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v-------~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 488 AIGFDRDGEFFATAG-VNKKIKIFECESIIKDGRDIHYPVVELASRSKL-------SGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred EEEECCCCCEEEEEe-CCCEEEEEECCcccccccccccceEEecccCce-------eeEEeccCCCCEEEEEeCCCeEEE
Q ss_pred EccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCE
Q psy14257 428 AKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTR 507 (841)
Q Consensus 428 ~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~ 507 (841)
.++........+........+|+++|.++.++++-.. .+.|...++........+. .-.....+.+...++.
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~--Dg~v~iWd~~~~~~~~~~~------~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSD--DGSVKLWSINQGVSIGTIK------TKANICCVQFPSESGR 631 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcC--CCEEEEEECCCCcEEEEEe------cCCCeEEEEEeCCCCC
Q ss_pred EEEEeCCCCeEEEEEcCCCe-eEEEEcCCCCCCcceEEEEecCeEEEEeCCCCeEEEEecc------CCcceEEEecccC
Q psy14257 508 IYWIDAKSDSIHTVTYDGKD-HHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKW------NGSDVTLIQRTLT 580 (841)
Q Consensus 508 LYw~d~~~~~I~~~~~dG~~-~~~i~~~~~~l~~P~gla~~~~~lY~td~~~~~i~~~~~~------~g~~~~~i~~~~~ 580 (841)
++.+-...+.|...++.... .......+ -..-..+.+..+..+++-...+.|...+.. .+..+..+...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-- 707 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGH--SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-- 707 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCC--CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--
Q ss_pred CCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcccc
Q psy14257 581 QPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTI 660 (841)
Q Consensus 581 ~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~~~ 660 (841)
...-...+..|.+-.|..-. ......++...................
T Consensus 708 ----------------------------~~~i~~v~~s~~~~~lasgs-----~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 708 ----------------------------TNVKNFVGLSVSDGYIATGS-----ETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred ----------------------------CCCeeEEEEcCCCCEEEEEe-----CCCEEEEEECCCCCceEEEecccCCcc
Q ss_pred ceeecCCCCC-ceEEEEecCCCEEEEEECCCCeEEEEEc
Q psy14257 661 PTISIPQVFS-PNNLNFDAANKKIYWTDQEYNEVKRSSI 698 (841)
Q Consensus 661 ~~~~~~~~~~-~~~v~~d~~~~~iyw~d~~~~~I~~~~~ 698 (841)
..+....... +..++|++.+..|.-+. ..+.|....+
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~lva~~-~dG~I~i~~~ 792 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSSTLVAAN-STGNIKILEM 792 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCeEEEec-CCCcEEEEec
No 265
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.29 E-value=7.4e+02 Score=26.62 Aligned_cols=201 Identities=12% Similarity=0.089 Sum_probs=105.5
Q ss_pred CCCCCCEEEEccCCC-ccccccccCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCC
Q psy14257 324 NSSDGGIEKAGMHGE-NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPN 402 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~-~~~~l~~~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~ 402 (841)
+...|.|-+.+...+ .+.-...+.---|.-|.+.++++.|.++.-.-.+= .-.| |+++
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Th---pd~G--R~kL---------------- 131 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETH---PDSG--RAKL---------------- 131 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccC---cccC--ceec----------------
Confidence 345678888888732 22222333444589999999888998886431110 0000 0000
Q ss_pred CCCCccccccceEEEEecCCCcEEEEccCCceEEE-EecC--CCCCceeEEEcCCCCeEEEEecCC-----CCCeEEEec
Q psy14257 403 CRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRT-LIAG--DMESPRAIALDPRFGLLFWTDWDS-----KAPRIERCS 474 (841)
Q Consensus 403 ~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~-l~~~--~l~~P~giavd~~~g~Ly~td~~~-----~~~~I~r~~ 474 (841)
.+|-..-+|-..|.. +|+.... .+.. ....-|-||+++. |.+.+..... ..+-|....
T Consensus 132 ----Nl~tM~psL~~ld~~---------sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~~a~Q~qg~~~~~~PLva~~~ 197 (305)
T PF07433_consen 132 ----NLDTMQPSLVYLDAR---------SGALLEQVELPPDLHQLSIRHLAVDGD-GTVAFAMQYQGDPGDAPPLVALHR 197 (305)
T ss_pred ----ChhhcCCceEEEecC---------CCceeeeeecCccccccceeeEEecCC-CcEEEEEecCCCCCccCCeEEEEc
Confidence 111111233333333 3333222 1211 2235788999976 6666664221 123344444
Q ss_pred CCCCCcEEEEEecc--cCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecCeEE
Q psy14257 475 MSGEHRSVIVRVDL--LTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVY 552 (841)
Q Consensus 475 ldG~~~~~i~~~~~--~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~~lY 552 (841)
.++. .+.+ .... ...--.+--.|+++...+.+.++-...+++..++......... . .+..-.||+...+.+.
T Consensus 198 ~g~~-~~~~-~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~--~--~l~D~cGva~~~~~f~ 271 (305)
T PF07433_consen 198 RGGA-LRLL-PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS--V--PLPDACGVAPTDDGFL 271 (305)
T ss_pred CCCc-ceec-cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec--c--ccCceeeeeecCCceE
Confidence 4332 2211 1000 0011134567999987788999999999999996554322211 1 2667789999776655
Q ss_pred EEeCCCCeEEEEec
Q psy14257 553 WTDWRTNSVIRANK 566 (841)
Q Consensus 553 ~td~~~~~i~~~~~ 566 (841)
||+ +.+.+.+...
T Consensus 272 ~ss-G~G~~~~~~~ 284 (305)
T PF07433_consen 272 VSS-GQGQLIRLSP 284 (305)
T ss_pred EeC-CCccEEEccC
Confidence 554 5566666654
No 266
>KOG0270|consensus
Probab=29.24 E-value=8.6e+02 Score=27.32 Aligned_cols=146 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred cCceeEEeecCCeEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeee
Q psy14257 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713 (841)
Q Consensus 634 ~~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 713 (841)
.+.-.|.-+-.+.+...++.. ....-..+.+. ..+.-|++++.+...|++....|+++-.++....
T Consensus 298 ~p~~LLsGs~D~~V~l~D~R~-~~~s~~~wk~~--g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----------- 363 (463)
T KOG0270|consen 298 EPSVLLSGSYDGTVALKDCRD-PSNSGKEWKFD--GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----------- 363 (463)
T ss_pred CceEEEeccccceEEeeeccC-ccccCceEEec--cceEEEEecCCCceeEEEecCCceEEeeecCCCC-----------
Q ss_pred ecccccccccccCceEEEEeeCCCCCcceeEEeecCCcEEEEecCCCCCeEEEEecCCcceEEEEc---CCCCCCCcCCC
Q psy14257 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILS---NESNDTSTLSK 790 (841)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~~~~~~~~---~~~~~~~~l~~ 790 (841)
...-.+.+.-+.+.||.+.....+|-.| ...-..+.+.++++...+.+.. . |..
T Consensus 364 --------------~~vwt~~AHd~~ISgl~~n~~~p~~l~t--~s~d~~Vklw~~~~~~~~~v~~~~~~-------~~r 420 (463)
T KOG0270|consen 364 --------------KPVWTLKAHDDEISGLSVNIQTPGLLST--ASTDKVVKLWKFDVDSPKSVKEHSFK-------LGR 420 (463)
T ss_pred --------------CceeEEEeccCCcceEEecCCCCcceee--ccccceEEEEeecCCCCccccccccc-------ccc
Q ss_pred ceEEEEeCCCCeEEEEecCCCcceEEEEe
Q psy14257 791 ISSIAVWPVKGKMFWSNVTKQVVTIEMAF 819 (841)
Q Consensus 791 p~~iavd~~~g~lyw~d~~~~~~~I~~~~ 819 (841)
....+.+|...+.|-+-.... +.|.+
T Consensus 421 l~c~~~~~~~a~~la~GG~k~---~~~vw 446 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKA---VLRVW 446 (463)
T ss_pred eeecccCCCcceEEEecCccc---eEEEe
No 267
>KOG3567|consensus
Probab=28.63 E-value=81 Score=35.28 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCC
Q psy14257 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526 (841)
Q Consensus 467 ~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~ 526 (841)
..+|.+..+. ++.++-. +....++.|.||.+| .+|..|++|...+.+....+.++
T Consensus 444 ~~~ilvi~~~--n~~~l~~--~g~~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 444 EDTILVIDPN--NAAVLQS--SGKNLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred cceEEEEcCc--chhhhhh--ccCCceecCCcceec-CCCcEEeecccchhhhhcccccc
Confidence 4567777766 2222222 123578899999999 67889989988888777766654
No 268
>KOG3512|consensus
Probab=28.19 E-value=1.5e+02 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=20.8
Q ss_pred eEecCCCCCCCCCCcccCCCCCCCc---cccCCCCCCCCCCccCCCCC
Q psy14257 44 RCIPLAWACDGQPDCGLNDTSDEDH---CVNDCTDWSDETNCTHSGNR 88 (841)
Q Consensus 44 ~Ci~~~~~Cdg~~dC~~~d~sde~~---C~~dC~~~~de~~C~~c~~~ 88 (841)
.|++...+|-..-+|- --|.... | ..|..+.-..+|..|..+
T Consensus 335 ~Cn~harrcrfn~Ely--~lSgr~SggvC-lnCrHnTaGrhChyCreG 379 (592)
T KOG3512|consen 335 NCNGHARRCRFNMELY--RLSGRRSGGVC-LNCRHNTAGRHCHYCREG 379 (592)
T ss_pred ccchhhhhcccchhhh--cccCccccceE-eecccCCCCcccccccCc
Confidence 3555555555544443 2222111 2 346666666677776444
No 269
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.99 E-value=8.3e+02 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=14.5
Q ss_pred cCCEEEEEeCC-CCeEEEEEc-CCCee
Q psy14257 504 QLTRIYWIDAK-SDSIHTVTY-DGKDH 528 (841)
Q Consensus 504 ~~~~LYw~d~~-~~~I~~~~~-dG~~~ 528 (841)
..+.+|+.... ...+..++. +|...
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCCcEe
Confidence 45677776543 345666766 55433
No 270
>KOG4649|consensus
Probab=27.51 E-value=7.3e+02 Score=25.97 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred ccccccceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEe
Q psy14257 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486 (841)
Q Consensus 407 avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~ 486 (841)
++|...|+|||-.--..||+- +.. ++ +++ +++--.+|.||+-+... ..+++.+-.-++-...
T Consensus 37 avd~~sG~~~We~ilg~RiE~-----sa~--vv-gdf-----VV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~---- 98 (354)
T KOG4649|consen 37 AVDPQSGNLIWEAILGVRIEC-----SAI--VV-GDF-----VVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVR---- 98 (354)
T ss_pred EecCCCCcEEeehhhCceeee-----eeE--EE-CCE-----EEEEEccCcEEEEEecc-hhheeeeeehhhhccc----
Confidence 567777999996655556553 222 22 222 66666789999999762 3367776654332110
Q ss_pred cccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEc---CCCCCCcceEEEEecCeEEEEeCCCCeEEE
Q psy14257 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLS---NHDSLTHPFAIALFENHVYWTDWRTNSVIR 563 (841)
Q Consensus 487 ~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~---~~~~l~~P~gla~~~~~lY~td~~~~~i~~ 563 (841)
-..|+.++-|| .-...+..+..|+.... -+.. ++..+..| .|+.-.+.||++-. .++|.+
T Consensus 99 ------------a~~d~~~glIy-cgshd~~~yalD~~~~~--cVykskcgG~~f~sP-~i~~g~~sly~a~t-~G~vla 161 (354)
T KOG4649|consen 99 ------------AQCDFDGGLIY-CGSHDGNFYALDPKTYG--CVYKSKCGGGTFVSP-VIAPGDGSLYAAIT-AGAVLA 161 (354)
T ss_pred ------------eEEcCCCceEE-EecCCCcEEEecccccc--eEEecccCCceeccc-eecCCCceEEEEec-cceEEE
Confidence 11233222222 33333344444332211 1111 11112223 34445678999864 578999
Q ss_pred EeccCCcceEEE
Q psy14257 564 ANKWNGSDVTLI 575 (841)
Q Consensus 564 ~~~~~g~~~~~i 575 (841)
++|.++...++.
T Consensus 162 vt~~~~~~~~~w 173 (354)
T KOG4649|consen 162 VTKNPYSSTEFW 173 (354)
T ss_pred EccCCCCcceeh
Confidence 998777655443
No 271
>KOG3621|consensus
Probab=27.12 E-value=1.1e+03 Score=28.09 Aligned_cols=191 Identities=10% Similarity=0.115 Sum_probs=98.2
Q ss_pred eEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEEEEccCC
Q psy14257 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSG 432 (841)
Q Consensus 353 glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G 432 (841)
-|++-...+.|||-....+..+...-.|+...+.. -.+... .+|-.+-...++|.++.++-
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~--~~vs~~-----------------e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCV--RSVSSV-----------------EYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEE--EEecch-----------------hHhhhhhcCCceEEeehhhc
Confidence 46666678999999998887777776664332221 111111 22222333455666655543
Q ss_pred ce--EEEEecC----CCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCcee-EEEeccC
Q psy14257 433 QF--RRTLIAG----DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG-LTLDYQL 505 (841)
Q Consensus 433 ~~--~~~l~~~----~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~g-lalD~~~ 505 (841)
.. ....+.. .-.+..+|+=+++.-.+|.-|. .++|.-..||-. ...+.... .-+..+.- +-||+..
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~---~Gkv~~~~L~s~-~~~~~~~q---~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS---QGKVVLTELDSR-QAFLSKSQ---EILSEDSEIVQLDYLQ 180 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCC---CceEEEEEechh-hhhccccc---eeeccCcceEEeeccc
Confidence 21 1111111 1234567777887778888874 477877777751 10000000 11122222 5689888
Q ss_pred CEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEecC-------eEEEEeCCCCeEEEEeccCCcceE
Q psy14257 506 TRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFEN-------HVYWTDWRTNSVIRANKWNGSDVT 573 (841)
Q Consensus 506 ~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~~-------~lY~td~~~~~i~~~~~~~g~~~~ 573 (841)
++|.++...+.- .++.+-...+.|....-....++|-.++-+ .||-+- ...+++.+|. .|..+.
T Consensus 181 ~~LLVStl~r~~--Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaR-PG~RlWead~-~G~V~~ 251 (726)
T KOG3621|consen 181 SYLLVSTLTRCI--LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCAR-PGLRLWEADF-AGEVIK 251 (726)
T ss_pred ceehHhhhhhhh--eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEec-CCCceEEeec-ceeEEE
Confidence 999888754332 233333223333322211223677666543 455554 4567777774 455443
No 272
>KOG3545|consensus
Probab=26.02 E-value=6.2e+02 Score=26.23 Aligned_cols=52 Identities=27% Similarity=0.200 Sum_probs=30.8
Q ss_pred ccceEEEEecCCC---cE-EEEccC-CceEEEEe--cCCCCCceeEEEcCCCCeEEEEe
Q psy14257 411 IGKNLYWVESNLD---QI-EVAKLS-GQFRRTLI--AGDMESPRAIALDPRFGLLFWTD 462 (841)
Q Consensus 411 ~~~~LY~tD~~~~---~I-~v~~~~-G~~~~~l~--~~~l~~P~giavd~~~g~Ly~td 462 (841)
+=|.||.+++.+. .| ..++.. |+..++.+ .....+-..|--.|.+..||.=|
T Consensus 178 iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 178 ICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred EeeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEec
Confidence 3389999987643 34 345555 44433222 12234456777888888899855
No 273
>KOG2096|consensus
Probab=25.98 E-value=8.5e+02 Score=26.21 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEe----cCCccEEEEeeeeecCCC-------ccccCCCCCCccccccceE
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRV----DGSERTVSFNLEVLGSDS-------RVGIPNCRPEDNLWIGKNL 415 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~l----dG~~~~~~~~~~~~~~~~-------~~~i~~~~~~avdw~~~~L 415 (841)
....|.-+++-++-..+.++=....+|+.+.+ ||+..-......-+.... .+|++.. ++.
T Consensus 131 e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~---------~k~ 201 (420)
T KOG2096|consen 131 EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN---------AKY 201 (420)
T ss_pred cCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCC---------ceE
Q ss_pred EEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecC----CCCCcEEEEEecccCC
Q psy14257 416 YWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSM----SGEHRSVIVRVDLLTS 491 (841)
Q Consensus 416 Y~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~l----dG~~~~~i~~~~~~~~ 491 (841)
..+-+....|...++.|.....+-...+.+-.+ ||.|.+++|-.+-.. +-+..... ||+.+++.-.
T Consensus 202 imsas~dt~i~lw~lkGq~L~~idtnq~~n~~a-avSP~GRFia~~gFT---pDVkVwE~~f~kdG~fqev~rv------ 271 (420)
T KOG2096|consen 202 IMSASLDTKICLWDLKGQLLQSIDTNQSSNYDA-AVSPDGRFIAVSGFT---PDVKVWEPIFTKDGTFQEVKRV------ 271 (420)
T ss_pred EEEecCCCcEEEEecCCceeeeeccccccccce-eeCCCCcEEEEecCC---CCceEEEEEeccCcchhhhhhh------
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCC--eEEEEEcCCCee
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSD--SIHTVTYDGKDH 528 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~--~I~~~~~dG~~~ 528 (841)
+.|--...-+.|+-..++ ++..+.-||+.+
T Consensus 272 -------f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr 303 (420)
T KOG2096|consen 272 -------FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR 303 (420)
T ss_pred -------heeccchhheeeeeeCCCcceeEEEecCCcEE
No 274
>KOG4258|consensus
Probab=25.91 E-value=46 Score=39.98 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=12.0
Q ss_pred ecCCCceecCCCCcccc
Q psy14257 155 VCPRDMYLQPDLITCSY 171 (841)
Q Consensus 155 ~C~~Gy~l~~d~~~C~~ 171 (841)
.||.||+..++...|..
T Consensus 309 ~CPsGy~~N~~~~~C~~ 325 (1025)
T KOG4258|consen 309 KCPSGYKRNSSSSECVK 325 (1025)
T ss_pred hCCCcceecCcccceec
Confidence 58899987776555553
No 275
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=25.64 E-value=75 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.550 Sum_probs=16.4
Q ss_pred EEecCCCceecCCCCcccccccc
Q psy14257 153 MCVCPRDMYLQPDLITCSYLHPC 175 (841)
Q Consensus 153 ~C~C~~Gy~l~~d~~~C~~~~eC 175 (841)
-|.|++||.+..+ ..|....+|
T Consensus 34 gC~C~~G~v~~~~-~~CV~~~~C 55 (55)
T PF01826_consen 34 GCFCPPGYVRNDN-GRCVPPSEC 55 (55)
T ss_dssp EEEETTTEEEETT-SEEEEGGGC
T ss_pred cCCCCCCeeEcCC-CCEEcHHHC
Confidence 3999999997655 577766554
No 276
>KOG0973|consensus
Probab=25.55 E-value=1.1e+03 Score=29.30 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=41.6
Q ss_pred ccccc-cceEEEEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEE
Q psy14257 407 DNLWI-GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472 (841)
Q Consensus 407 avdw~-~~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r 472 (841)
++.|. .+.+.++-+..++|.+.+...-.+..++.+....+.|+++||.+.| |-+..+...-+|+|
T Consensus 134 Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 134 DVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWR 199 (942)
T ss_pred eeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEE
Confidence 44454 3556666666778888876543444556666788999999998554 44444433445666
No 277
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=24.76 E-value=1.5e+02 Score=27.58 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=20.5
Q ss_pred ccCCCCC-CCCCCccCCCCCCCCCCCCCCCCcccCCCCCeEecC
Q psy14257 70 VNDCTDW-SDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPK 112 (841)
Q Consensus 70 ~~dC~~~-~de~~C~~c~~~~~c~~~C~~~~~~C~~~~~~Ci~~ 112 (841)
.+.|.|- +|..+|..| ...|+.++.-| + +.|++.
T Consensus 74 ~~~Cvdv~~d~~nCG~C------g~~C~~g~~cC-~--G~Cvd~ 108 (136)
T PF04885_consen 74 NNKCVDVSSDRNNCGAC------GNKCPYGQTCC-G--GQCVDL 108 (136)
T ss_pred CCcCCccCCCccccHhh------cCCCCCCceec-C--CEeECC
Confidence 3445543 367778774 45677766555 3 777765
No 278
>KOG3545|consensus
Probab=24.63 E-value=8e+02 Score=25.44 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=59.2
Q ss_pred cceEEEEecCCCcEEEEccCCceE--EEEe-cCCCCCc----------eeEEEcCCCCe--EEEEecCCCCCeEEEecCC
Q psy14257 412 GKNLYWVESNLDQIEVAKLSGQFR--RTLI-AGDMESP----------RAIALDPRFGL--LFWTDWDSKAPRIERCSMS 476 (841)
Q Consensus 412 ~~~LY~tD~~~~~I~v~~~~G~~~--~~l~-~~~l~~P----------~giavd~~~g~--Ly~td~~~~~~~I~r~~ld 476 (841)
+|.+|+--..+..|.++++..... ...+ ..+...| .++|+|.. |. ||=|... .+.|..+.||
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~-GLWviYat~~~--~g~iv~skLd 153 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDEN-GLWVIYATPEN--AGTIVLSKLD 153 (249)
T ss_pred cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceeccc-ceeEEeccccc--CCcEEeeccC
Confidence 388888888888899999876332 2222 1223344 68999965 52 3333322 5677777887
Q ss_pred CCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCC---eE-EEEEcC
Q psy14257 477 GEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD---SI-HTVTYD 524 (841)
Q Consensus 477 G~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~---~I-~~~~~d 524 (841)
-...++..........-..-+++-|- |.||..++.+. .| +.++..
T Consensus 154 p~tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~ 202 (249)
T KOG3545|consen 154 PETLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTT 202 (249)
T ss_pred HHHhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcC
Confidence 64333222210000111223455554 88999887543 34 455555
No 279
>KOG0308|consensus
Probab=24.61 E-value=1.2e+03 Score=27.58 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=54.2
Q ss_pred EEecCCCcEEEEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCC-CcEEEEEecccCCCCCC
Q psy14257 417 WVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGE-HRSVIVRVDLLTSRGAW 495 (841)
Q Consensus 417 ~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~-~~~~i~~~~~~~~~~~~ 495 (841)
.+-+..+.|.+-+|.-.....-....-...+++..+|.-.++|..+. .+.|+|.+|... ..+.|.. .-..
T Consensus 229 ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r---d~~i~~Tdl~n~~~~tlick------~daP 299 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR---DGNIYRTDLRNPAKSTLICK------EDAP 299 (735)
T ss_pred eecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC---CCcEEecccCCchhheEeec------CCCc
Confidence 34445677888887654433222223345889999998889998774 478999999763 3333332 1111
Q ss_pred ceeEEEeccCCEEEEEeCCCCeEEEE
Q psy14257 496 PNGLTLDYQLTRIYWIDAKSDSIHTV 521 (841)
Q Consensus 496 P~glalD~~~~~LYw~d~~~~~I~~~ 521 (841)
-.-|.+.....-+ |+-.....|.+-
T Consensus 300 v~~l~~~~~~~~~-WvtTtds~I~rW 324 (735)
T KOG0308|consen 300 VLKLHLHEHDNSV-WVTTTDSSIKRW 324 (735)
T ss_pred hhhhhhccccCCc-eeeeccccceec
Confidence 2234444333333 555545555554
No 280
>KOG1226|consensus
Probab=24.46 E-value=2.9e+02 Score=33.20 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.4
Q ss_pred EEecCCCce
Q psy14257 153 MCVCPRDMY 161 (841)
Q Consensus 153 ~C~C~~Gy~ 161 (841)
+|.|.+||.
T Consensus 567 ~CvC~~Gwt 575 (783)
T KOG1226|consen 567 RCVCNPGWT 575 (783)
T ss_pred cEEcCCCCc
Confidence 455666664
No 281
>KOG3914|consensus
Probab=23.92 E-value=1e+03 Score=26.36 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
.++.++.+...+.++-++|. .+..++.+...-. .++ .+. +...+.-...+||.+.
T Consensus 108 ~~~~ai~~~~~~~sv~v~dk-agD~~~~di~s~~----------------~~~-------~~~-~lGhvSml~dVavS~D 162 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADK-AGDVYSFDILSAD----------------SGR-------CEP-ILGHVSMLLDVAVSPD 162 (390)
T ss_pred cCcceeeeeeccceEEEEee-cCCceeeeeeccc----------------ccC-------cch-hhhhhhhhheeeecCC
Confidence 56788889888899999984 5666655543211 000 112 2235566788888888
Q ss_pred CCcEEEEecCCCCCeEEEEecCCcceE--EEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCC
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEGEYQT--TILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQ 811 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g~~~~--~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~ 811 (841)
.+.+--+ | ...+|+|+++.+.+.- -.+.. -.-...|+|-+. ++.|.-.|.+
T Consensus 163 ~~~Iita--D-RDEkIRvs~ypa~f~IesfclGH-------~eFVS~isl~~~--~~LlS~sGD~ 215 (390)
T KOG3914|consen 163 DQFIITA--D-RDEKIRVSRYPATFVIESFCLGH-------KEFVSTISLTDN--YLLLSGSGDK 215 (390)
T ss_pred CCEEEEe--c-CCceEEEEecCcccchhhhcccc-------HhheeeeeeccC--ceeeecCCCC
Confidence 8888888 4 4788999999887531 11111 234556677544 6666666653
No 282
>KOG1587|consensus
Probab=23.74 E-value=7.1e+02 Score=29.34 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=62.5
Q ss_pred eeeecccccCCcceeEEEecCCCeEEEEEecCCcccceEEEE-------eCCCCCccceEEeeecCceeEEEeeecCCCC
Q psy14257 251 TIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV-------QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323 (841)
Q Consensus 251 ~~avd~~~~~~~~~lyw~d~~~~~I~~~~~~~~~~~~~~~~~-------~~~l~~p~giavD~~~~~~y~~~td~~~~~~ 323 (841)
+.+++|.+..-. .|++-+..|.|+++...|.. ....++ ..+......+...|...++++...||+.
T Consensus 350 ~t~~~F~~~~p~--~FiVGTe~G~v~~~~r~g~~--~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~v--- 422 (555)
T KOG1587|consen 350 ATSLKFEPTDPN--HFIVGTEEGKVYKGCRKGYT--PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTV--- 422 (555)
T ss_pred eeeEeeccCCCc--eEEEEcCCcEEEEEeccCCc--ccccccccccccccccCcceEeeecCCCccceeeeecccee---
Confidence 567788777655 88999999999998776543 222011 1122233334455556666776667743
Q ss_pred CCCCCCEEEEccCCCccccccc--cCcCCCceEEEEccCCEEEEEeCCCCeEEEEEecC
Q psy14257 324 NSSDGGIEKAGMHGENRSPLVT--KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDG 380 (841)
Q Consensus 324 ~~~~~~I~~~~~dG~~~~~l~~--~~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG 380 (841)
+|+.-.. ...++.. .....-.++++.+.+-.||.+-...+.|...||.-
T Consensus 423 -----riWs~~~---~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 423 -----RIWSEDV---IASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred -----EeccccC---CCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 2222221 1122221 12222445666666666666666666665555543
No 283
>KOG0649|consensus
Probab=22.61 E-value=8.7e+02 Score=25.14 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=49.0
Q ss_pred CCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCCCCcceeEEeec
Q psy14257 669 FSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWI 748 (841)
Q Consensus 669 ~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~glAvD~~ 748 (841)
..+.|+-.||.++.|+.+- +.+.|+.+++..+.|+. .....-+....++.-..
T Consensus 115 PeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r--------------------------~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQR--------------------------EYRGHTDYVHSVVGRNA 167 (325)
T ss_pred CccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEE--------------------------EEcCCcceeeeeeeccc
Confidence 4567889999999999998 78899999987766332 23333444455554323
Q ss_pred CCcEEEEecCCCCCeEEEEecCCcc
Q psy14257 749 AQNMFIAVSSPTQSKIVVCNLEGEY 773 (841)
Q Consensus 749 ~~~LYw~~~~~~~~~I~v~~l~g~~ 773 (841)
+..++ + ..+.+++++.++....
T Consensus 168 ~~qil-s--G~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 168 NGQIL-S--GAEDGTVRVWDTKTQK 189 (325)
T ss_pred Cccee-e--cCCCccEEEEeccccc
Confidence 33333 3 4567788888876543
No 284
>KOG0196|consensus
Probab=22.60 E-value=1e+02 Score=37.21 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEecCCCceecCCCCcccc-----------ccccCCCCCc-cCceeecCCCCceEEeecCCeeecCCCCceEeCCCCCCC
Q psy14257 153 MCVCPRDMYLQPDLITCSY-----------LHPCEAWGTC-SQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSS 220 (841)
Q Consensus 153 ~C~C~~Gy~l~~d~~~C~~-----------~~eC~~~~~C-s~~C~~~~~~g~~~C~C~~G~~l~~d~~~C~~~~~~~~~ 220 (841)
.|.|.+||.....+..|+. ...| ..| .+.-... .++-.|.|..||.-......-.+-...+..
T Consensus 260 ~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C---~~CP~~S~s~~--ega~~C~C~~gyyRA~~Dp~~mpCT~PPSa 334 (996)
T KOG0196|consen 260 GCVCKAGYEEAENGKACQACPPGTYKASQGDSLC---LPCPPNSHSSS--EGATSCTCENGYYRADSDPPSMPCTRPPSA 334 (996)
T ss_pred ceeecCCCCcccCCCcceeCCCCcccCCCCCCCC---CCCCCCCCCCC--CCCCcccccCCcccCCCCCCCCCCCCCCCc
Q ss_pred CeEEeccCcc
Q psy14257 221 PFVIFSNRHE 230 (841)
Q Consensus 221 p~ll~s~~~~ 230 (841)
|.-++++.++
T Consensus 335 P~nlis~vn~ 344 (996)
T KOG0196|consen 335 PRNLISNVNG 344 (996)
T ss_pred cceeeeeccc
No 285
>KOG4328|consensus
Probab=22.22 E-value=1.9e+02 Score=32.30 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=63.9
Q ss_pred CceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeC--CCCCcceeEEee
Q psy14257 670 SPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDA--GISHPSGLAIDW 747 (841)
Q Consensus 670 ~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~p~glAvD~ 747 (841)
.+..|.|.|.+-.-.++....|+|+-.++.+...+ ++... .-..-.++-+--
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e--------------------------~v~s~~~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE--------------------------EVLSLDTDNIWFSSLDFSA 289 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhH--------------------------HHhhcCccceeeeeccccC
Confidence 35567777777666666667899999888876622 22211 112234455555
Q ss_pred cCCcEEEEecCCCCCeEEEEe--cCCc-ceEEEEcCCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceEEEE
Q psy14257 748 IAQNMFIAVSSPTQSKIVVCN--LEGE-YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMA 818 (841)
Q Consensus 748 ~~~~LYw~~~~~~~~~I~v~~--l~g~-~~~~~~~~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I~~~ 818 (841)
..+++|+.+ .-+...++. .+|+ .-....+. .+..+|++.|..-+++-|-...+..+|+=+
T Consensus 290 e~~~vl~~~---~~G~f~~iD~R~~~s~~~~~~lh~--------kKI~sv~~NP~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 290 ESRSVLFGD---NVGNFNVIDLRTDGSEYENLRLHK--------KKITSVALNPVCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred CCccEEEee---cccceEEEEeecCCccchhhhhhh--------cccceeecCCCCchheeecccCcceeeeeh
Confidence 567777773 233444444 3454 22222233 378888888887777766655443445433
No 286
>KOG2321|consensus
Probab=21.67 E-value=8.2e+02 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=25.2
Q ss_pred eEEEEecCCCEEEEEECCCCeEEEEEcccCc
Q psy14257 672 NNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ 702 (841)
Q Consensus 672 ~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~ 702 (841)
..+.|+..+-.||.+- ....|||++|..+.
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGr 166 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGR 166 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEccccc
Confidence 5788998999999887 46789999998766
No 287
>KOG0319|consensus
Probab=21.58 E-value=1.5e+03 Score=27.36 Aligned_cols=372 Identities=9% Similarity=0.067 Sum_probs=174.4
Q ss_pred CcCCCceEEEEccCCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCccccCCCCCCccccccceEEEEecCCCcEE
Q psy14257 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE 426 (841)
Q Consensus 347 ~~~~P~glavD~~~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~~i~~~~~~avdw~~~~LY~tD~~~~~I~ 426 (841)
....-..+++++++..||.+- ....+....++-+....... .......+. +++|.. +.|.-+-...+++.
T Consensus 61 d~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswK--a~He~Pvi~------ma~~~~-g~LlAtggaD~~v~ 130 (775)
T KOG0319|consen 61 DEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWK--AIHEAPVIT------MAFDPT-GTLLATGGADGRVK 130 (775)
T ss_pred chhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHh--hccCCCeEE------EEEcCC-CceEEeccccceEE
Confidence 344456788998877777664 34555666665442221100 000000000 123333 35666666678999
Q ss_pred EEccCCceEEEEecCCCCCceeEEEcCCCCeEEEEe-cCCCCCeEEEecCCCCCc-EEEEEecccCCCCCCceeEEEecc
Q psy14257 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTD-WDSKAPRIERCSMSGEHR-SVIVRVDLLTSRGAWPNGLTLDYQ 504 (841)
Q Consensus 427 v~~~~G~~~~~l~~~~l~~P~giavd~~~g~Ly~td-~~~~~~~I~r~~ldG~~~-~~i~~~~~~~~~~~~P~glalD~~ 504 (841)
|.++.+.+...-+.+.-.-...|.++|.-.+ |-- .+...+.+..-++.-... ..+.. .....-++|++-.+
T Consensus 131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~--~lL~sg~~D~~v~vwnl~~~~tcl~~~~-----~H~S~vtsL~~~~d 203 (775)
T KOG0319|consen 131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNR--WLLASGATDGTVRVWNLNDKRTCLHTMI-----LHKSAVTSLAFSED 203 (775)
T ss_pred EEEeeCCEEEEEecCCCceEEEEEeCCccch--hheeecCCCceEEEEEcccCchHHHHHH-----hhhhheeeeeeccC
Confidence 9999998887766543344567777776333 211 122256666666652211 11111 24455678888655
Q ss_pred CCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceEEEE-ec-----CeEEEEeCCCCeEEEEeccCCcceEEEecc
Q psy14257 505 LTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FE-----NHVYWTDWRTNSVIRANKWNGSDVTLIQRT 578 (841)
Q Consensus 505 ~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~-~~-----~~lY~td~~~~~i~~~~~~~g~~~~~i~~~ 578 (841)
...+ ++-.+...|..-++-......++.. ...--++.. .+ +..+.|-...+.+..++..+++-... .
T Consensus 204 ~~~~-ls~~RDkvi~vwd~~~~~~l~~lp~---ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~-~-- 276 (775)
T KOG0319|consen 204 SLEL-LSVGRDKVIIVWDLVQYKKLKTLPL---YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYK-Q-- 276 (775)
T ss_pred CceE-EEeccCcEEEEeehhhhhhhheech---hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhh-h--
Confidence 3333 3434444555556632111111111 111123333 22 22334433334333333322221100 0
Q ss_pred cCCCceeccCCcccCCCCCCCCCCccccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCeEEEEecCCCCcc
Q psy14257 579 LTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYH 658 (841)
Q Consensus 579 ~~~p~~~h~qp~~~n~C~~~ng~Cs~lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~i~~~~l~~~~~~ 658 (841)
+||. +.+ ..+..-+. ...++++++..+.|+.++.+.-..
T Consensus 277 --------~~~~------------------------------~~e-~~~~~~~~-~~~~~l~vtaeQnl~l~d~~~l~i- 315 (775)
T KOG0319|consen 277 --------RQSD------------------------------SEE-IDHLLAIE-SMSQLLLVTAEQNLFLYDEDELTI- 315 (775)
T ss_pred --------ccCC------------------------------chh-hhcceecc-ccCceEEEEccceEEEEEccccEE-
Confidence 1221 000 00011111 335566666666677664432110
Q ss_pred ccceeecCCCCCceEEEE-ecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeeeecccccccccccCceEEEEeeCCC
Q psy14257 659 TIPTISIPQVFSPNNLNF-DAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGI 737 (841)
Q Consensus 659 ~~~~~~~~~~~~~~~v~~-d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 737 (841)
.---+.+-..+..+-| -|.++.+.++. .+..++...+.+.. -+ |+.+.-
T Consensus 316 --~k~ivG~ndEI~Dm~~lG~e~~~laVAT-Ns~~lr~y~~~~~~--------------------------c~-ii~GH~ 365 (775)
T KOG0319|consen 316 --VKQIVGYNDEILDMKFLGPEESHLAVAT-NSPELRLYTLPTSY--------------------------CQ-IIPGHT 365 (775)
T ss_pred --ehhhcCCchhheeeeecCCccceEEEEe-CCCceEEEecCCCc--------------------------eE-EEeCch
Confidence 0000112223333333 34556666665 56677777666655 22 444444
Q ss_pred CCcceeEEeecCCcEEEEecCCCCCeEEEEecCCc-ceEEEEc-CCCCCCCcCCCceEEEEeCCCCeEEEEecCCCcceE
Q psy14257 738 SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE-YQTTILS-NESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTI 815 (841)
Q Consensus 738 ~~p~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g~-~~~~~~~-~~~~~~~~l~~p~~iavd~~~g~lyw~d~~~~~~~I 815 (841)
+.+.+|+ -|.++.|+.| ..+.+++...+++.. .....+. . + .--....+++. ...|.=|++-.+++ .+|
T Consensus 366 e~vlSL~-~~~~g~llat--~sKD~svilWr~~~~~~~~~~~a~~--~--gH~~svgava~-~~~~asffvsvS~D-~tl 436 (775)
T KOG0319|consen 366 EAVLSLD-VWSSGDLLAT--GSKDKSVILWRLNNNCSKSLCVAQA--N--GHTNSVGAVAG-SKLGASFFVSVSQD-CTL 436 (775)
T ss_pred hheeeee-ecccCcEEEE--ecCCceEEEEEecCCcchhhhhhhh--c--ccccccceeee-cccCccEEEEecCC-ceE
Confidence 4455555 2667778888 457889999999443 2222221 1 0 00235566777 45666666666654 234
Q ss_pred EEEecCC
Q psy14257 816 EMAFMDG 822 (841)
Q Consensus 816 ~~~~~dG 822 (841)
-.=.+.+
T Consensus 437 K~W~l~~ 443 (775)
T KOG0319|consen 437 KLWDLPK 443 (775)
T ss_pred EEecCCC
Confidence 4334444
No 288
>KOG0292|consensus
Probab=21.56 E-value=1.6e+03 Score=27.86 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=44.3
Q ss_pred CCceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEc
Q psy14257 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523 (841)
Q Consensus 444 ~~P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~ 523 (841)
...+-+|++|. --|+++-.....-+++|++- +....+-. -........++-+++ .+.|..+....+.|++-|+
T Consensus 207 RGVNwaAfhpT-lpliVSG~DDRqVKlWrmne--tKaWEvDt---crgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 207 RGVNWAAFHPT-LPLIVSGADDRQVKLWRMNE--TKAWEVDT---CRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cccceEEecCC-cceEEecCCcceeeEEEecc--ccceeehh---hhcccCCcceEEecC-ccceeEecCCCccEEEEec
Confidence 34566788885 44677755544556777663 22211110 002344556777875 4667778877788888887
Q ss_pred CC
Q psy14257 524 DG 525 (841)
Q Consensus 524 dG 525 (841)
+.
T Consensus 280 ~k 281 (1202)
T KOG0292|consen 280 TK 281 (1202)
T ss_pred cc
Confidence 65
No 289
>KOG0284|consensus
Probab=21.55 E-value=1.1e+03 Score=26.14 Aligned_cols=198 Identities=9% Similarity=0.061 Sum_probs=96.2
Q ss_pred ceeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCC
Q psy14257 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDG 525 (841)
Q Consensus 446 P~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG 525 (841)
.+++...+...+|.-.|.+ +-|.--..+-.+.+.+.. ..-.....+|+.+ ++..|.+-...++|..-+..-
T Consensus 141 Vr~m~ws~~g~wmiSgD~g---G~iKyWqpnmnnVk~~~a-----hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKG---GMIKYWQPNMNNVKIIQA-----HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ceeEEEccCCCEEEEcCCC---ceEEecccchhhhHHhhH-----hhhhhhheeccCC-CCceeEEecCCCeEEEEeccC
Confidence 4677777665555544533 333333333333333322 1123357788886 677787777778777776654
Q ss_pred CeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEeccCCcceEEEecccCCCceeccCCcccCCCCCCCCCCcc
Q psy14257 526 KDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSH 604 (841)
Q Consensus 526 ~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~~~g~~~~~i~~~~~~p~~~h~qp~~~n~C~~~ng~Cs~ 604 (841)
.....++.+++ -.+..++..- ..|.++-...+-|.-.++.+|..+..+...-.
T Consensus 212 ~kee~vL~GHg--wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn------------------------ 265 (464)
T KOG0284|consen 212 PKEERVLRGHG--WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN------------------------ 265 (464)
T ss_pred CchhheeccCC--CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc------------------------
Confidence 33333444432 2345555532 22333322233444444444433222111000
Q ss_pred ccccCCCCceeeeCCCCceeecCCCcccccCceeEEeecCCe-EEEEecCCCCccccceeecCCCCCceEEEEecCCCEE
Q psy14257 605 LCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPRE-IRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKI 683 (841)
Q Consensus 605 lC~~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~l~~~~~~~-i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~i 683 (841)
|++ +..+. ....||+.+.++. ++.+++. ....+ ..--..-..+..+++.|....|
T Consensus 266 -tVl------------~~~f~--------~n~N~Llt~skD~~~kv~DiR--~mkEl-~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 266 -TVL------------AVKFN--------PNGNWLLTGSKDQSCKVFDIR--TMKEL-FTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred -eEE------------EEEEc--------CCCCeeEEccCCceEEEEehh--HhHHH-HHhhcchhhheeeccccccccc
Confidence 000 00111 1234555554443 3333332 11110 0001122456788999999999
Q ss_pred EEEECCCCeEEEEEcccCc
Q psy14257 684 YWTDQEYNEVKRSSIVGGQ 702 (841)
Q Consensus 684 yw~d~~~~~I~~~~~~g~~ 702 (841)
|.+-...++|.-..+....
T Consensus 322 ftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred eeeccCCCceEEEeccccc
Confidence 9998888888887776444
No 290
>KOG3567|consensus
Probab=21.51 E-value=4.1e+02 Score=30.03 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCCeeEEEEcCCCCCCcceEEEEec-CeEEEEeCCCCeEEEEec
Q psy14257 515 SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFE-NHVYWTDWRTNSVIRANK 566 (841)
Q Consensus 515 ~~~I~~~~~dG~~~~~i~~~~~~l~~P~gla~~~-~~lY~td~~~~~i~~~~~ 566 (841)
..+|-++++....+.. -.+...+.-|.||.++. |+.|++|-.++.+.+...
T Consensus 444 ~~~ilvi~~~n~~~l~-~~g~~~fylphgl~~dkdgf~~~tdvash~v~k~k~ 495 (501)
T KOG3567|consen 444 EDTILVIDPNNAAVLQ-SSGKNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKP 495 (501)
T ss_pred cceEEEEcCcchhhhh-hccCCceecCCcceecCCCcEEeecccchhhhhccc
Confidence 3467777776332222 22334566789999976 566666666776665543
No 291
>KOG1517|consensus
Probab=21.15 E-value=1.8e+03 Score=28.18 Aligned_cols=201 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred CEEEEccCCCcccccccc--------CcCCCceEEEEcc--CCEEEEEeCCCCeEEEEEecCCccEEEEeeeeecCCCcc
Q psy14257 329 GIEKAGMHGENRSPLVTK--------NIQWPSSLVIDYN--QDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRV 398 (841)
Q Consensus 329 ~I~~~~~dG~~~~~l~~~--------~~~~P~glavD~~--~~~lYwaD~~~~~I~~~~ldG~~~~~~~~~~~~~~~~~~ 398 (841)
||++-..++.....+++. ...+-.|+.+|.. .+.||.+-- ...|+.-+.+-.....-+..+.-...-.+
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTAL 1214 (1387)
T ss_pred EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceee
Q ss_pred ccCCCCCCccccccceEEEEecCCCcEEEEccCCceEEEEec-----CCCCCceeEEEcCCCCeE-EEEecCCCCCeEEE
Q psy14257 399 GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA-----GDMESPRAIALDPRFGLL-FWTDWDSKAPRIER 472 (841)
Q Consensus 399 ~i~~~~~~avdw~~~~LY~tD~~~~~I~v~~~~G~~~~~l~~-----~~l~~P~giavd~~~g~L-y~td~~~~~~~I~r 472 (841)
.-|-.++++.++--..|+|.++|..-.....++. .......++.+.+. |+- .++-.. ++.|+.
T Consensus 1215 --------S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~-G~~elvSgs~--~G~I~~ 1283 (1387)
T KOG1517|consen 1215 --------SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ-GLGELVSGSQ--DGDIQL 1283 (1387)
T ss_pred --------cccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-CCcceeeecc--CCeEEE
Q ss_pred ecCCCCCcEEEEEecccCCCCCCceeEEEeccCCEEEEEeCCCCeEEEEEcCCCeeEEEEcCCCCCCcceE
Q psy14257 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFA 543 (841)
Q Consensus 473 ~~ldG~~~~~i~~~~~~~~~~~~P~glalD~~~~~LYw~d~~~~~I~~~~~dG~~~~~i~~~~~~l~~P~g 543 (841)
.++.++......+....-.....-+.|++. ....|+-+-.. ..|..++++|....++..+...+.++.|
T Consensus 1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVH-EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred EecccCcccccceeeeccccCccceeeeec-cCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCC
No 292
>KOG3881|consensus
Probab=20.92 E-value=6.6e+02 Score=27.71 Aligned_cols=96 Identities=10% Similarity=0.097 Sum_probs=57.2
Q ss_pred ceEEEEecCCCcEEEEccCCceEEEEecCCCCCc-eeEEEcCCCCeEEEEecCCCCCeEEEecCCCCCcEEEEEecccCC
Q psy14257 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESP-RAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTS 491 (841)
Q Consensus 413 ~~LY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P-~giavd~~~g~Ly~td~~~~~~~I~r~~ldG~~~~~i~~~~~~~~ 491 (841)
.+-|.|-+..+.+..++..-..+.+.--.-+.+| ..+++.|...+||.++.. +.+..+++.+. +.+... ...
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~---g~l~~FD~r~~--kl~g~~--~kg 288 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK---GQLAKFDLRGG--KLLGCG--LKG 288 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc---chhheecccCc--eeeccc--cCC
Confidence 4566777778899999887444444333334455 578999999999999964 56666665543 333210 002
Q ss_pred CCCCceeEEEeccCCEEEEEeCCCCe
Q psy14257 492 RGAWPNGLTLDYQLTRIYWIDAKSDS 517 (841)
Q Consensus 492 ~~~~P~glalD~~~~~LYw~d~~~~~ 517 (841)
.-..+.+|..++ +..+ .+-.+.++
T Consensus 289 ~tGsirsih~hp-~~~~-las~GLDR 312 (412)
T KOG3881|consen 289 ITGSIRSIHCHP-THPV-LASCGLDR 312 (412)
T ss_pred ccCCcceEEEcC-CCce-EEeeccce
Confidence 334577888874 3333 34444443
No 293
>KOG3658|consensus
Probab=20.90 E-value=2.4e+02 Score=33.35 Aligned_cols=47 Identities=28% Similarity=0.579 Sum_probs=29.6
Q ss_pred CcEEecCCCceecCCCCccccccccCCCCCccCceeecCCCCceEEeecCC
Q psy14257 151 GFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAG 201 (841)
Q Consensus 151 ~~~C~C~~Gy~l~~d~~~C~~~~eC~~~~~Cs~~C~~~~~~g~~~C~C~~G 201 (841)
|+.-.||+.-. .+|+..|.....| ..|.|...|-.. .|--.|.|.++
T Consensus 549 G~~aeCP~s~~-~~d~t~C~~~~~C-~~G~C~gs~c~~--~glesC~c~~~ 595 (764)
T KOG3658|consen 549 GFSAECPPSPP-KPDGTVCNETGVC-INGKCIGSCCLM--QGLESCFCTET 595 (764)
T ss_pred CCccCCcCCCC-CCCCCcccccceE-eCCcCccHHHHh--hCcceeeeccC
Confidence 34445655432 2577788877777 456777765554 56677888765
No 294
>KOG1034|consensus
Probab=20.85 E-value=1e+03 Score=25.72 Aligned_cols=106 Identities=15% Similarity=0.109 Sum_probs=63.9
Q ss_pred CceeEEeecCC-eEEEEecCCCCccccceeecCCCCCceEEEEecCCCEEEEEECCCCeEEEEEcccCceeeeeeeeeee
Q psy14257 635 DSQFIIFSRPR-EIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713 (841)
Q Consensus 635 ~~~~l~~~~~~-~i~~~~l~~~~~~~~~~~~~~~~~~~~~v~~d~~~~~iyw~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 713 (841)
..|||+++... .|+.|++....-.- --+.--..+.+|-+-|..-.+..+-...++|+-.++....
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~----------- 169 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV----------- 169 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-----------
Confidence 47888887644 46666654321111 0011223456677777777788888888999998886543
Q ss_pred ecccccccccccCceEEEEeeCCCCCc--ceeEEeecCCcEEEEecCCCCCeEEEEecCC
Q psy14257 714 YLTPLSKRSSIVGGQIQLVVDAGISHP--SGLAIDWIAQNMFIAVSSPTQSKIVVCNLEG 771 (841)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~i~~~~~~~p--~glAvD~~~~~LYw~~~~~~~~~I~v~~l~g 771 (841)
- +.+-++...- +=|.|||..+--|++.. ...+.|.+.+|+-
T Consensus 170 ---------------C-v~VfGG~egHrdeVLSvD~~~~gd~i~Sc-GmDhslk~W~l~~ 212 (385)
T KOG1034|consen 170 ---------------C-VAVFGGVEGHRDEVLSVDFSLDGDRIASC-GMDHSLKLWRLNV 212 (385)
T ss_pred ---------------E-EEEecccccccCcEEEEEEcCCCCeeecc-CCcceEEEEecCh
Confidence 1 1122233222 23778888877788853 4567788888873
No 295
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=20.62 E-value=1e+02 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=15.9
Q ss_pred ceeecCCCCceEEeecCCeeecC
Q psy14257 184 DCEPSVSNNSYKCTCHAGYELEP 206 (841)
Q Consensus 184 ~C~~~~~~g~~~C~C~~G~~l~~ 206 (841)
.|.+. ..|++.|.|..||....
T Consensus 12 ~C~~~-~dG~eecrCllgyk~~~ 33 (37)
T PF12946_consen 12 GCFRY-DDGSEECRCLLGYKKVG 33 (37)
T ss_dssp EEEEE-TTSEEEEEE-TTEEEET
T ss_pred ccEEc-CCCCEEEEeeCCccccC
Confidence 56665 14999999999999753
Done!