RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14257
(841 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 339 bits (871), Expect = e-104
Identities = 158/709 (22%), Positives = 273/709 (38%), Gaps = 90/709 (12%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI +W+CDG DC +GSDE + C + C + F C++ +CI + CD
Sbjct: 79 CIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEFRCHDG-KCISRQFVCDS-------- 127
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
DC D SDE +C C P F C TCIP+ CD +P C
Sbjct: 128 -------DRDCLDGSDEASC--------PVLTCGPASFQCNS--STCIPQLWACDNDPDC 170
Query: 123 FNGEDEMF----------------------CDEKQCLRS----DCHHDCYNTPEGFMCVC 156
+G DE C +C+ S D DC + + C
Sbjct: 171 EDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV 230
Query: 157 PRDMYLQPDLITCSYLHPCEAWGTCS--QDCEPSVSNNSYKC--TCHAGYELEPDMFTCK 212
+PD CS + C DC+ C + + C
Sbjct: 231 AT---CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECI 287
Query: 213 SKSK--NDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDV 270
+ K N + +S+ + S + N + + +
Sbjct: 288 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 347
Query: 271 IDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGI 330
+ I + V G + + + A S++ ++
Sbjct: 348 RCEDIDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Query: 331 EKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLE 390
+ + + N++ +L + + +YW D + S ++D + +
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSY 462
Query: 391 VLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIA 450
+ P+ D WI N+YW +S L + VA G R+TL + PRAI
Sbjct: 463 DTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520
Query: 451 LDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYW 510
+DP G ++WTDW + +I++ ++G +V ++ WPNG+TLD R+YW
Sbjct: 521 VDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYW 574
Query: 511 IDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGS 570
+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ AN+ GS
Sbjct: 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634
Query: 571 DVTLIQRTLTQPF-IYVNGVVKK----SPCE---MNNGNCSHLCLI-----GMNGTYKCQ 617
DV L+ L P + + + + + CE ++NG C +LCL + + C
Sbjct: 635 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCA 694
Query: 618 CPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIP 666
CP M L D ++C + +++ + ++ + + T T + P
Sbjct: 695 CPDGMLLARDMRSC-LTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRP 742
Score = 127 bits (319), Expect = 3e-30
Identities = 68/239 (28%), Positives = 79/239 (33%), Gaps = 58/239 (24%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGL 60
CI W CDG +C+DGSDE E C C F+C RCIP W CDGQ DC
Sbjct: 35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD- 93
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
+ SDE C C EF C D CI + VCD +
Sbjct: 94 --------------NGSDEQGCP--------PKTCSQDEFRCHD--GKCISRQFVCDSDR 129
Query: 121 ACFNGEDEMFCDEKQC----------------LRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
C +G DE C C D DC + + + C Q
Sbjct: 130 DCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 189
Query: 165 DLITCSYLHPCEAWGTC---------SQDCEP-SVSNNSYKCTCHAGYELEPDMFTCKS 213
D CS G C DC+ S N TC PD F C
Sbjct: 190 DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCR------PDEFQCSD 242
Score = 98.8 bits (245), Expect = 2e-21
Identities = 52/228 (22%), Positives = 74/228 (32%), Gaps = 49/228 (21%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67
WK + +C+ + F C + +CI W CDG +C
Sbjct: 3 WKLRWTVALLLAAAGT---AVGDRCERNEFQCQDG-KCISYKWVCDGSAECQ-------- 50
Query: 68 HCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGED 127
D SDE+ T + C+ +F C + CIP+ CDG+ C NG D
Sbjct: 51 -------DGSDESQETCL------SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD 97
Query: 128 EMFCDEKQCLRSDCHHDCYN---TPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS-- 182
E C K C S C++ F+C RD D +C L A C+
Sbjct: 98 EQGCPPKTC--SQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS 155
Query: 183 ------------QDCEPSVSNNSYKCTCHAGYEL-----EPDMFTCKS 213
DCE +C ++ F C S
Sbjct: 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 203
Score = 85.7 bits (211), Expect = 3e-17
Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 37/236 (15%)
Query: 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT-CQVADSQFIIFSRPREIRGVDLEHPY 656
+ CS LC + + G YKCQC +L K V ++ F+ E+R + L+
Sbjct: 357 DPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 657 YHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLT 716
Y ++ IP + + L+ + A+ +IYW+D + + +
Sbjct: 416 YTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------- 458
Query: 717 PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTT 776
V+ I P GLA+DWI N++ S + V + +G + T
Sbjct: 459 ---------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKT 507
Query: 777 ILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 508 LFREN------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTEN 556
Score = 42.5 bits (99), Expect = 6e-04
Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 662 TISIPQVFSPNNLNFDAANKKIYWTDQEYNEV--------KRSSIVGGQIQ----LVVDA 709
T+ + +P+ L D + IYWTD V KR ++ +VVD
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 710 VFEF-YLT-----PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763
V F Y T K+ + G I +V I P+G+ +D ++ ++ S
Sbjct: 524 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHS 581
Query: 764 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823
I ++ G + TIL +E L+ S+AV+ + K+FW+++ + + + G+
Sbjct: 582 ISSIDVNGGNRKTILEDEKR----LAHPFSLAVF--EDKVFWTDIINEAI-FSANRLTGS 634
Query: 824 KRETVVSQKKYP 835
+ P
Sbjct: 635 DVNLLAENLLSP 646
Score = 39.0 bits (90), Expect = 0.007
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 7/110 (6%)
Query: 131 CDEKQCLRSDCHHDCYNTPE------GFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQD 184
C+ C + C P+ F C CP M L D+ +C +
Sbjct: 664 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETST 723
Query: 185 CEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGV 234
V +++ T H PD + ++ ++ + L V
Sbjct: 724 VRLKV-SSTAVRTQHTTTRPVPDTSRLPGATPGLTTVEIVTMSHQALGDV 772
Score = 38.7 bits (89), Expect = 0.010
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 21/124 (16%)
Query: 173 HPCEAW----GTCSQDCEPS----VSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVI 224
+ CE G C C P+ + + C C G L DM +C + +
Sbjct: 662 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL-----TEAEAAV 716
Query: 225 FSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNS 284
+ + + + ++++ T+ + + T+ +
Sbjct: 717 ATQETSTVRLKVSS-------TAVRTQHTTTRPVPDTSR-LPGATPGLTTVEIVTMSHQA 768
Query: 285 LSNI 288
L ++
Sbjct: 769 LGDV 772
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 326 bits (836), Expect = e-100
Identities = 152/652 (23%), Positives = 243/652 (37%), Gaps = 82/652 (12%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLN 61
CI + CD D DC DGSDE C C + F CN + CIP WACD PDC
Sbjct: 99 KCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCE-- 153
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121
D SDE C + C EF C CI + CDG P
Sbjct: 154 DGSDEWPQ-----------RCRGLYVFQGDSSPCSAFEFHCLS--GECIHSSWRCDGGPD 200
Query: 122 CFNGEDEMFCDEKQCLRSDCHHDCYNT---PEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178
C + DE C C + C + C D D + C + CE
Sbjct: 201 CKDKSDEENCAVATCRPDEFQ--CSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 258
Query: 179 GTC---SQDCEPSVSNNSYKCTCHA---GYELEPDMFTCKSKSKNDSSPFVIFSNRHELR 232
S +C C + EP ++ +++
Sbjct: 259 NKFKCHSGECITL----DKVCNMARDCRDWSDEPIKECGTNECLDNNGG----------- 303
Query: 233 GVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVV 292
+ L + F + D + +
Sbjct: 304 ----CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 359
Query: 293 QTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPS 352
+ A +G Y+F+ + + + + N++
Sbjct: 360 EGFQLDPHTKACKAVGSIAYLFFT----------NRHEVRKMTLDRSEYTSLIPNLRNVV 409
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
+L + + +YW D + S ++D + S++ + + P+ D WI
Sbjct: 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDGLAVD--WIH 464
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
N+YW +S L + VA G R+TL PRAI +DP G ++WTDW + +I++
Sbjct: 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKK 523
Query: 473 CSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVL 532
++G +V ++ WPNG+TLD R+YW+D+K SI ++ +G + +L
Sbjct: 524 GGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578
Query: 533 SNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVK 591
+ L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P + + +
Sbjct: 579 EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLT 638
Query: 592 K-------SPCEMNNGNCSHLCLI-----GMNGTYKCQCPHVMKLMSDNKTC 631
+ ++NG C +LCL + + C CP M L D ++C
Sbjct: 639 QPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
Score = 131 bits (329), Expect = 1e-31
Identities = 66/234 (28%), Positives = 78/234 (33%), Gaps = 48/234 (20%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGL 60
CI W CDG +C+DGSDE E C C F+C RCIP W CDGQ DC
Sbjct: 17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCD- 75
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
+ SDE C C EF C D CI + VCD +
Sbjct: 76 --------------NGSDEQGCP--------PKTCSQDEFRCHD--GKCISRQFVCDSDR 111
Query: 121 ACFNGEDEMFCDEKQC----------------LRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
C +G DE C C D DC + + + C Q
Sbjct: 112 DCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQG 171
Query: 165 DLITCSYLHPCEAWGTCSQ-----DCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
D CS G C D P + S + C PD F C
Sbjct: 172 DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATC-RPDEFQCSD 224
Score = 85.2 bits (210), Expect = 3e-17
Identities = 48/199 (24%), Positives = 70/199 (35%), Gaps = 43/199 (21%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
+C+ + F C + +CI W CDG +C D SDE+ T
Sbjct: 4 DRCERNEFQCQDG-KCISYKWVCDG---------------SAECQDGSDESQETC----- 42
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYN-- 147
+ C+ +F C + CIP+ CDG+ C NG DE C K C S C++
Sbjct: 43 -LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTC--SQDEFRCHDGK 99
Query: 148 -TPEGFMCVCPRD------------MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNS- 193
F+C RD + P C+ C D +P + S
Sbjct: 100 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC--DNDPDCEDGSD 157
Query: 194 -YKCTCHAGYELEPDMFTC 211
+ C Y + D C
Sbjct: 158 EWPQRCRGLYVFQGDSSPC 176
Score = 82.2 bits (202), Expect = 3e-16
Identities = 48/239 (20%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKT-CQVADSQFIIFSRPREIRGVDLE 653
E + + + + G YKCQC +L K V ++ F+ E+R + L+
Sbjct: 335 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 394
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
Y ++ P + + L+ + A+ +IYW+D + + +
Sbjct: 395 RSEYTSLI----PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG---------- 440
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
V+ I P GLA+DWI N++ S + V + +G
Sbjct: 441 ------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGVK 486
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ T+ + SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 487 RKTLFREQ------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGVDIYSLVTEN 538
Score = 45.2 bits (106), Expect = 8e-05
Identities = 31/136 (22%), Positives = 41/136 (30%), Gaps = 18/136 (13%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT-----P 149
CE +EF CQD CI VCDG C +G DE C P
Sbjct: 6 CERNEFQCQD--GKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 63
Query: 150 EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCS----------QDCEPSVSNNSYKCTCH 199
+ + C D D C + C D + + S + +C
Sbjct: 64 QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP 123
Query: 200 AGYELEPDMFTCKSKS 215
P F C S +
Sbjct: 124 VL-TCGPASFQCNSST 138
Score = 43.3 bits (101), Expect = 4e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 27/192 (14%)
Query: 662 TISIPQVFSPNNLNFDAANKKIYWTDQEYNEV--------KRSSIVGGQIQ----LVVDA 709
T+ + +P+ L D + IYWTD V KR ++ Q +VVD
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 710 VFEF-YLT-----PLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSK 763
V F Y T K+ + G I +V I P+G+ +D ++ ++ S
Sbjct: 506 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHS 563
Query: 764 IVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGT 823
I ++ G + TIL +E L+ S+AV+ + K+FW+++ + + G+
Sbjct: 564 ISSIDVNGGNRKTILEDEKR----LAHPFSLAVF--EDKVFWTDIINEAIFSANRL-TGS 616
Query: 824 KRETVVSQKKYP 835
+ P
Sbjct: 617 DVNLLAENLLSP 628
Score = 35.6 bits (81), Expect = 0.075
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 157 PRDMYLQPDLITCSYLHPCEAW----GTCSQDCEPS----VSNNSYKCTCHAGYELEPDM 208
P DM L L ++ CE G C C P+ + + C C G L DM
Sbjct: 628 PEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 687
Query: 209 FTCKS 213
+C +
Sbjct: 688 RSCLT 692
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 320 bits (820), Expect = 7e-99
Identities = 138/514 (26%), Positives = 240/514 (46%), Gaps = 60/514 (11%)
Query: 325 SSDGGIEKAGMHGENRSPLV-TKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
S I + + N + + ++ S+L D + +YW D L T+ ++GS
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNL---WIGKNLYWVESNLDQIEVAKLSGQFRRTLIA 440
G+ + + W+GKNLYW ++ ++IEV+KL GQ R+ L+
Sbjct: 72 EHVVE---------FGLDYP---EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW 119
Query: 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500
D++SPRA+ALDP G ++WT+W K P+I+R +M G R+ +V NGLT
Sbjct: 120 KDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSERTTLV------PNVGRANGLT 172
Query: 501 LDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560
+DY R+YW D ++ I + G + V+ + L HPF + +++++YWTDW S
Sbjct: 173 IDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD---LPHPFGLTQYQDYIYWTDWSRRS 229
Query: 561 VIRANKWNGSDVTLIQRTLTQPFIYVNGVVKK----SPCEMNNGNCSHLCLIGMNGTYKC 616
+ RANK +G + T+IQ L + + + C +NG+CSHLCL G + C
Sbjct: 230 IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVC 289
Query: 617 QCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNF 676
CP L +DN+TC + + + I + ++ I + I + + +++
Sbjct: 290 GCPAHYSLNADNRTCSAPTTFLLFSQK-SAINRMVIDEQQSPDI-ILPIHSLRNVRAIDY 347
Query: 677 DAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAG 736
D +K++YW D N ++++ G Q VV + +
Sbjct: 348 DPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVS--------------------SVPSQNL 387
Query: 737 ISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAV 796
P L+ID ++ ++ + + I V L+G +L E + ++ V
Sbjct: 388 EIQPYDLSIDIYSRYIYWTCEA--TNVINVTRLDGRSVGVVLKGE------QDRPRAVVV 439
Query: 797 WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
P KG M+++N+ ++ IE A +DGT+RE +
Sbjct: 440 NPEKGYMYFTNLQERSPKIERAALDGTEREVLFF 473
Score = 241 bits (615), Expect = 1e-69
Identities = 72/304 (23%), Positives = 133/304 (43%), Gaps = 16/304 (5%)
Query: 335 MHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGS 394
L +++ ++ D LYW DS N + + DGS+ + S
Sbjct: 326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVV-SSVPS 384
Query: 395 DSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPR 454
+ P D + +YW + I V +L G+ ++ G+ + PRA+ ++P
Sbjct: 385 QNLEIQPYDLSID--IYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPE 442
Query: 455 FGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAK 514
G +++T+ ++P+IER ++ G R V+ L + P L LD +L +++W D+
Sbjct: 443 KGYMYFTNLQERSPKIERAALDGTEREVLFFSGL-----SKPIALALDSRLGKLFWADSD 497
Query: 515 SDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTL 574
I + G + V+ ++ + P + +FEN +YW D + + + + T
Sbjct: 498 LRRIESSDLSGANRIVLEDSN--ILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTK 555
Query: 575 IQRTLTQPFIYVNGVVKK------SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDN 628
+Q + Q PC +NG CSH+CL+ +GT +C CP + L+ D
Sbjct: 556 VQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDE 615
Query: 629 KTCQ 632
+C
Sbjct: 616 LSCG 619
Score = 176 bits (447), Expect = 9e-47
Identities = 123/656 (18%), Positives = 231/656 (35%), Gaps = 151/656 (23%)
Query: 221 PFVIFSNRHELRGVDLRT--FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNA 278
F++FS R ++R + L T NV ++ +K ALDF T N ++WTD+ I A
Sbjct: 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRA 64
Query: 279 TLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGE 338
+ G S ++ VV+ GL EG+AVDW+GKNLY WA ++ IE + + G+
Sbjct: 65 FMNG---SALEHVVEFGLDYPEGMAVDWLGKNLY--WA-------DTGTNRIEVSKLDGQ 112
Query: 339 NRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSERTVSFNLEVLGSDSR 397
+R LV K++ P +L +D + +YW + ++ +DGSERT
Sbjct: 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--------- 163
Query: 398 VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGL 457
+ + + LYW + + + IE + + G R + P + +
Sbjct: 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPH-PFGLTQYQDY-- 219
Query: 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG------------------------ 493
++WTDW ++ IER + + I++ L
Sbjct: 220 IYWTDWSRRS--IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277
Query: 494 ------------AWPNGLTLDYQLTRIYWIDA-----KSDSIHTVTYDGKDHHVVLSNHD 536
P +L+ + +I+ + D + ++
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337
Query: 537 SLTHPFAIA--LFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSP 594
SL + AI + +YW D R N + +A + +GS + VV P
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE-DGSQGFTV-------------VVSSVP 383
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEH 654
+ L + + + I L+
Sbjct: 384 SQNLEIQPYDLSIDIYSRYI-----------------------YWTCEATNVINVTRLDG 420
Query: 655 PYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFY 714
+ + P + + +Y+T+ + +I+
Sbjct: 421 RSVGVVLKGEQDR---PRAVVVNPEKGYMYFTNLQER--------SPKIE---------- 459
Query: 715 LTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQ 774
R+++ G + +++ +G+S P LA+D +F A S +I +L G +
Sbjct: 460 ------RAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSD--LRRIESSDLSGANR 511
Query: 775 TTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
+ + + + + ++W + +Q IE M G + T V
Sbjct: 512 IVLEDSNIL--------QPVGLTVFENWLYWIDKQQQ--MIEKIDMTGREGRTKVQ 557
Score = 125 bits (315), Expect = 5e-30
Identities = 71/349 (20%), Positives = 112/349 (32%), Gaps = 29/349 (8%)
Query: 107 RTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEG-FMCVCPRDMYLQPD 165
RT I L + F+ + +E C H C P G F+C CP L D
Sbjct: 241 RTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNAD 300
Query: 166 LITCSYLHPCEAWGTCSQDCE-PSVSNNSYKCTCHAGYELEPDMFTCKSKSKN----DSS 220
TCS + S S K DS
Sbjct: 301 NRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360
Query: 221 PFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATL 280
+I + G T V ++ S D + ++WT + I L
Sbjct: 361 QNMIRKAQ--EDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRL 418
Query: 281 IGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENR 340
G ++ VV++ + V+ YM++ IE+A + G R
Sbjct: 419 DG---RSVGVVLKGEQDRPRAVVVNPEKG--YMYFTNL-----QERSPKIERAALDGTER 468
Query: 341 SPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGI 400
L + P +L +D L+W DS L +ES + G+ R V + +L
Sbjct: 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNIL-------- 520
Query: 401 PNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAI 449
+P LYW++ IE ++G+ RT + + I
Sbjct: 521 ---QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDI 566
Score = 106 bits (266), Expect = 5e-24
Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 37/198 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
F++FSR +IR + LE + I + V + L+FD + +IYWTD + R+
Sbjct: 8 FLLFSRRADIRRISLETNNNNVA--IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ G ++ VV+ G+ +P G+A+DW+ +N++ A +
Sbjct: 66 MNGSALEHVVEF--------------------------GLDYPEGMAVDWLGKNLYWADT 99
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V L+G+++ ++ + L ++A+ P +G M+W+ + I+
Sbjct: 100 GT--NRIEVSKLDGQHRQVLVWKD------LDSPRALALDPAEGFMYWTEWGGKPK-IDR 150
Query: 818 AFMDGTKRETVVSQKKYP 835
A MDG++R T+V
Sbjct: 151 AAMDGSERTTLVPNVGRA 168
Score = 82.9 bits (204), Expect = 2e-16
Identities = 62/396 (15%), Positives = 125/396 (31%), Gaps = 44/396 (11%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
L ++ I R S+ + +V + + + + L D RIYW D
Sbjct: 8 FLLFSRRAD----IRRISLETNNNNVAIPLTGVKE----ASALDFDVTDNRIYWTDISLK 59
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
+I +G V+ L +P +A+ ++YW D TN + + L
Sbjct: 60 TISRAFMNGSALEHVVE--FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117
Query: 575 IQRTLTQPF-IYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
+ + L P + ++ + G + M+G+ + + +
Sbjct: 118 VWKDLDSPRALALD-PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYA 176
Query: 634 ADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEV 693
+ I ++ I +P F IYWTD +
Sbjct: 177 KRRLYWTDLDTNLIESSNMLGLNREVIAD-DLPHPFG-----LTQYQDYIYWTDWSRRSI 230
Query: 694 KRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGI---------------- 737
+R++ GQ + ++ ++ + L SS G + G
Sbjct: 231 ERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290
Query: 738 -SHPSGLAIDWIAQNMFIAVSS-PTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIA 795
L D + +S I ++ + I+ + L + +I
Sbjct: 291 CPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHS----LRNVRAID 346
Query: 796 VWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQ 831
P+ +++W + + I A DG++ TVV
Sbjct: 347 YDPLDKQLYWIDSRQN--MIRKAQEDGSQGFTVVVS 380
Score = 37.1 bits (85), Expect = 0.027
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 160 MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
+ +L + G CS C + + +C+C L D +C
Sbjct: 568 AVKELNLQEYRQHPCAQDNGGCSHICLVK-GDGTTRCSCPMHLVLLQDELSCGG 620
Score = 33.2 bits (75), Expect = 0.39
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 128 EMFCDEKQCLRSDCHHDCYNTPEG-FMCVCPRDMYLQPDLITC 169
E C H C +G C CP + L D ++C
Sbjct: 576 EYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSC 618
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 300 bits (768), Expect = 2e-91
Identities = 148/513 (28%), Positives = 254/513 (49%), Gaps = 59/513 (11%)
Query: 325 SSDGGIEKAGMH-GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
++ + G+ + +V ++ +++ ++ ++YW D ++ + +E
Sbjct: 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 74
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
+ + L S + D W+G+ LYW +S ++IEV+ L G R+ L ++
Sbjct: 75 VQNVVVSGLLSPDGLAC------D--WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 126
Query: 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDY 503
+ PRAIALDP G ++WTDW P+IER M G R +I+ ++ WPNGLTLDY
Sbjct: 127 DQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEI-----YWPNGLTLDY 180
Query: 504 QLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIR 563
+ ++YW DAK + IH DG + V+ L HPFA+ LFE+ +YWTDW T+S++
Sbjct: 181 EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILA 238
Query: 564 ANKWNGSDVTLIQRTLTQPF-----IYVNGVVKKSPCEMNNGNCSHLCLIGMNG-TYKCQ 617
NK+ G + I + P +PC ++NG CSHLCL+ Y+C
Sbjct: 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCA 298
Query: 618 CPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFD 677
CP +KL+ + KTC+ ++ ++ +R ++R + L+ P + I + + + +++D
Sbjct: 299 CPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-LQLEDIRHAIAIDYD 357
Query: 678 AANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGI 737
IYWTD E + +RS I G Q VV A I
Sbjct: 358 PVEGYIYWTDDEVRAI--------------------------RRSFIDGSGSQFVVTAQI 391
Query: 738 SHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVW 797
+HP G+A+DW+A+N++ + +I V L G + ++S + L + +I +
Sbjct: 392 AHPDGIAVDWVARNLYWTDTG--TDRIEVTRLNGTMRKILISED------LEEPRAIVLD 443
Query: 798 PVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
P+ G M+W++ + IE A +DG+ R +V+
Sbjct: 444 PMVGYMYWTDWGEIPK-IERAALDGSDRVVLVN 475
Score = 229 bits (585), Expect = 2e-65
Identities = 103/313 (32%), Positives = 153/313 (48%), Gaps = 21/313 (6%)
Query: 322 PSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGS 381
+ +D L ++I+ ++ D + +YW D + + +DGS
Sbjct: 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS 381
Query: 382 ERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG 441
+ GI W+ +NLYW ++ D+IEV +L+G R+ LI+
Sbjct: 382 GSQF---VVTAQIAHPDGI------AVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE 432
Query: 442 DMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTL 501
D+E PRAI LDP G ++WTDW P+IER ++ G R V+V L WPNGL L
Sbjct: 433 DLEEPRAIVLDPMVGYMYWTDWGE-IPKIERAALDGSDRVVLVNTSL-----GWPNGLAL 486
Query: 502 DYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSV 561
DY +IYW DAK+D I + DG V++ D + H F L ++VYWTDW+ S+
Sbjct: 487 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV--EDKIPHIFGFTLLGDYVYWTDWQRRSI 544
Query: 562 IRANKWNGSDVTLIQRT---LTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQC 618
R +K + +I + + V+ V+ +PC NG CSHLCL +C C
Sbjct: 545 ERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYR-PQGLRCAC 603
Query: 619 PHVMKLMSDNKTC 631
P +L+SD KTC
Sbjct: 604 PIGFELISDMKTC 616
Score = 112 bits (282), Expect = 5e-26
Identities = 91/508 (17%), Positives = 173/508 (34%), Gaps = 119/508 (23%)
Query: 252 IALDFYYTPTANMVFWTDVID-DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKN 310
IALD P++ ++WTD + KI A + G S+ +++ + + GL +D+ +
Sbjct: 132 IALD----PSSGFMYWTDWGEVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYEEQK 184
Query: 311 LYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHL 370
LY ++ I K+ + G NR +V ++ P +L + +DILYW D
Sbjct: 185 LYWA---------DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWST 233
Query: 371 NTVESV-RVDGSERTVSFN-------LEVLGSDSRVGIPNCRPEDN-------------- 408
+++ + + G + + + N DN
Sbjct: 234 HSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP 293
Query: 409 --------------------LWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRA 448
+ L + L D+ A
Sbjct: 294 FYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353
Query: 449 IALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508
I DP G ++WTD + + I R + G +V + A P+G+ +D+ +
Sbjct: 354 IDYDPVEGYIYWTDDEVR--AIRRSFIDGSGSQFVVTAQI-----AHPDGIAVDWVARNL 406
Query: 509 YWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANK 566
YW D +D I +G +++S L P AI L ++YWTDW I
Sbjct: 407 YWTDTGTDRIEVTRLNGTMRKILISE--DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464
Query: 567 WNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMS 626
+GSD ++ + + NG L
Sbjct: 465 LDGSDRVVL---VNTSLGWPNG-----------------------------------LAL 486
Query: 627 DNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWT 686
D ++ + ++ +I ++ + + IP +F F +YWT
Sbjct: 487 DYDEGKI----YWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFG-----FTLLGDYVYWT 537
Query: 687 DQEYNEVKRSSIVGGQIQLVVDAVFEFY 714
D + ++R + ++++D + +
Sbjct: 538 DWQRRSIERVHKRSAEREVIIDQLPDLM 565
Score = 104 bits (261), Expect = 2e-23
Identities = 68/332 (20%), Positives = 125/332 (37%), Gaps = 71/332 (21%)
Query: 157 PRDMYLQPDLITCSYLHP-CEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKS 215
P D++ + +P G CS C S Y+C C G +L + TCK
Sbjct: 257 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK--- 313
Query: 216 KNDSSPFVIFSNRHELRGVDLRTFN---VIALISSLKNTIALDF-------YYT------ 259
+ ++ ++ + R +LR + L T + ++ + +++ IA+D+ Y+T
Sbjct: 314 -DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA 372
Query: 260 ----------------------------PTANMVFWTDVIDDKIYNATLIGNSLSNIDVV 291
A ++WTD D+I L G + ++
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG---TMRKIL 429
Query: 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWP 351
+ L + +D + YM+W W P IE+A + G +R LV ++ WP
Sbjct: 430 ISEDLEEPRAIVLDPMVG--YMYWTDWGEIPK------IERAALDGSDRVVLVNTSLGWP 481
Query: 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI 411
+ L +DY++ +YW D+ + +E + DG+ R V ++ +
Sbjct: 482 NGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH-----------IFGFTLL 530
Query: 412 GKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
G +YW + IE R +I
Sbjct: 531 GDYVYWTDWQRRSIERVHKRSAEREVIIDQLP 562
Score = 102 bits (255), Expect = 1e-22
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 36/193 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++++ R++R VD + + TI + + ++F ++ IYW+D +KR+
Sbjct: 11 LLLYANRRDLRLVDATNGKENA--TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+Q VV +G+ P GLA DW+ + ++ S
Sbjct: 69 FNKT-------------------------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDS 103
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V NL+G + + E L + +IA+ P G M+W++ + IE
Sbjct: 104 E--TNRIEVSNLDGSLRKVLFWQE------LDQPRAIALDPSSGFMYWTDWGEVPK-IER 154
Query: 818 AFMDGTKRETVVS 830
A MDG+ R +++
Sbjct: 155 AGMDGSSRFIIIN 167
Score = 42.1 bits (98), Expect = 7e-04
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 154 CVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ E G CS C +C C G+EL DM TC
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYR--PQGLRCACPIGFELISDMKTC 616
Score = 38.6 bits (89), Expect = 0.008
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 122 CFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
N + + C H C P+G C CP L D+ TC
Sbjct: 569 ATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 29.4 bits (65), Expect = 5.5
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 788 LSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVTGVS 841
L +++ G ++WS+V+++ I+ + T+ V + G++
Sbjct: 39 LEDAAAVDFVFSHGLIYWSDVSEE--AIKRTEFNKTESVQNVVVSGLLSPDGLA 90
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 262 bits (671), Expect = 4e-81
Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 25/320 (7%)
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
++ + K + + L+ N++ +L + + +YW D + S ++D +
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 65
Query: 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDME 444
+ + P+ D WI N+YW +S L + VA G R+TL +
Sbjct: 66 ---SSYDTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS 120
Query: 445 SPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQ 504
PRAI +DP G ++WTDW + +I++ ++G +V ++ WPNG+TLD
Sbjct: 121 KPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLL 174
Query: 505 LTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRA 564
R+YW+D+K SI ++ +G + +L + L HPF++A+FE+ V+WTD ++ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 565 NKWNGSDVTLIQRTLTQPFIYVNGVVKK-----SPCE---MNNGNCSHLCLI-----GMN 611
N+ GSDV L+ L P V + CE ++NG C +LCL +
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS 294
Query: 612 GTYKCQCPHVMKLMSDNKTC 631
+ C CP M L D ++C
Sbjct: 295 PKFTCACPDGMLLARDMRSC 314
Score = 106 bits (266), Expect = 3e-25
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++ F+ E+R + L+ Y ++ IP + + L+ + A+ +IYW+D + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+ V+ I P GLA+DWI N++ S
Sbjct: 59 LDRAHGV----------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 96
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
+ V + +G + T+ SK +I V PV G M+W++ I+
Sbjct: 97 V--LGTVSVADTKGVKRKTLFREN------GSKPRAIVVDPVHGFMYWTDWGTPAK-IKK 147
Query: 818 AFMDGTKRETVVS 830
++G ++V+
Sbjct: 148 GGLNGVDIYSLVT 160
Score = 57.4 bits (138), Expect = 6e-09
Identities = 37/266 (13%), Positives = 78/266 (29%), Gaps = 79/266 (29%)
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKS 515
LF+T+ + + ++ + ++ L + RIYW D
Sbjct: 2 AYLFFTNRHE----VRKMTLDRSEYTSLI------PNLRNVVALDTEVASNRIYWSDLSQ 51
Query: 516 DSIHTVTYDGKD--HHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSD 571
I + D + P +A+ +++YWTD +V A+
Sbjct: 52 RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111
Query: 572 VTLIQRTLTQP----------FIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHV 621
TL + ++P F+Y + G + + G+NG
Sbjct: 112 KTLFRENGSKPRAIVVDPVHGFMYW----------TDWGTPAKIKKGGLNGV-------- 153
Query: 622 MKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANK 681
I ++ + PN + D +
Sbjct: 154 -------------------------------------DIYSLVTENIQWPNGITLDLLSG 176
Query: 682 KIYWTDQEYNEVKRSSIVGGQIQLVV 707
++YW D + + + + GG + ++
Sbjct: 177 RLYWVDSKLHSISSIDVNGGNRKTIL 202
Score = 39.3 bits (91), Expect = 0.004
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 157 PRDMYLQPDLITCSYLHPCEAW----GTCSQDCEPS----VSNNSYKCTCHAGYELEPDM 208
P DM L +L ++ CE G C C P+ + + C C G L DM
Sbjct: 252 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 311
Query: 209 FTCKS 213
+C +
Sbjct: 312 RSCLT 316
Score = 39.3 bits (91), Expect = 0.004
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 6/45 (13%)
Query: 131 CDEKQCLRSDCHHDCYNTP------EGFMCVCPRDMYLQPDLITC 169
C+ C + C P F C CP M L D+ +C
Sbjct: 270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 252 bits (645), Expect = 2e-76
Identities = 101/290 (34%), Positives = 143/290 (49%), Gaps = 24/290 (8%)
Query: 347 NIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPE 406
N++ +L + +++++W D L+ + ++GS + + P
Sbjct: 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------STGLESPGGLAV 166
Query: 407 DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSK 466
D W+ LYW +S +IEVA L G R+ L+ +E PRAIAL P G ++WTDW +
Sbjct: 167 D--WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224
Query: 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526
PRIE SM G R +I L WPNGLT+DY R+YW+DAK I DG
Sbjct: 225 -PRIEASSMDGSGRRIIADTHL-----FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278
Query: 527 DHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYV 586
V+S L HPFAI +FE+ +YWTDW T S+ ANK+ G + +I+ L P
Sbjct: 279 HRKAVISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 336
Query: 587 -----NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
K+ C NNG C+HLCL Y C CP + ++ C
Sbjct: 337 TLHPQRQPAGKNRCGDNNGGCTHLCLPS-GQNYTCACPTGFRK-INSHAC 384
Score = 154 bits (390), Expect = 4e-41
Identities = 85/363 (23%), Positives = 136/363 (37%), Gaps = 73/363 (20%)
Query: 125 GEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQD 184
GE+ C+ C C C C L D TC ++ C G CSQ
Sbjct: 2 GEEN--CNVNNG---GCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQG 56
Query: 185 CEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIAL 244
C S +++C C AGYEL PD +CK+ P ++F+NR ++R V L
Sbjct: 57 CTNS--EGAFQCWCEAGYELRPDRRSCKA---LGPEPVLLFANRIDIRQVLPHRSEYTLL 111
Query: 245 ISSLKNTIALDFYYT-----------------------------------------PTAN 263
+++L+N IALDF++ +
Sbjct: 112 LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD 171
Query: 264 MVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323
++WTD +I A L G ++ V++ L +A+ + ++W W +P
Sbjct: 172 KLYWTDSGTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEG--TIYWTDWGNTPR 226
Query: 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
IE + M G R + ++ WP+ L IDY +YW D+ + +E +DGS R
Sbjct: 227 ------IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280
Query: 384 TVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
V+ ED +LYW + + I A + +I +
Sbjct: 281 KA-----VISQGLPHPFAITVFED------SLYWTDWHTKSINSANKFTGKNQEIIRNKL 329
Query: 444 ESP 446
P
Sbjct: 330 HFP 332
Score = 105 bits (262), Expect = 3e-24
Identities = 51/239 (21%), Positives = 99/239 (41%), Gaps = 40/239 (16%)
Query: 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLE 653
C G CS C G ++C C +L D ++C+ + ++ R L
Sbjct: 46 ECA-EEGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
H +T+ + + + L+F + ++W+D + + R+++ G ++ VV
Sbjct: 104 HRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 156
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
G+ P GLA+DW+ ++ S S+I V NL+G +
Sbjct: 157 ----------------------GLESPGGLAVDWVHDKLYWTDSGT--SRIEVANLDGAH 192
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ +L +L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 193 RKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIADTH 244
Score = 35.9 bits (82), Expect = 0.044
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 157 PRDMYLQPDLITCSYLHPCEAW-GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
P D++ + + C G C+ C PS +Y C C G+ + C
Sbjct: 332 PMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS--GQNYTCACPTGFRKI-NSHAC 384
Score = 33.6 bits (76), Expect = 0.30
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 671 PNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVD---------AVFEFYL------ 715
PN L D A +++YW D +++ ++R+++ G + V+ VFE L
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 307
Query: 716 TPLSKRSSIVGGQIQLVVDAGISHPSGLAI 745
T ++ G+ Q ++ + P +
Sbjct: 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337
Score = 32.8 bits (74), Expect = 0.48
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 129 MFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
+ C H C + + + C CP C+
Sbjct: 345 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSH-ACA 385
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 250 bits (640), Expect = 1e-75
Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 24/301 (7%)
Query: 344 VTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC 403
+ N++ +L + + +YW D + S ++D + S++ + + P+
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---SRDIQAPDG 163
Query: 404 RPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDW 463
D WI N+YW +S L + VA G R+TL + PRAI +DP G ++WTDW
Sbjct: 164 LAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 221
Query: 464 DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523
+ +I++ ++G +V ++ WPNG+TLD R+YW+D+K SI ++
Sbjct: 222 GTP-AKIKKGGLNGVDIYSLVTENI-----QWPNGITLDLLSGRLYWVDSKLHSISSIDV 275
Query: 524 DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF 583
+G + +L + L HPF++A+FE+ V+WTD ++ AN+ GSDV L+ L P
Sbjct: 276 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 335
Query: 584 IYVNGVVKKSPCEMN--------NGNCSHLCLIG-----MNGTYKCQCPHVMKLMSDNKT 630
V P +N NG C +LCL + + C CP M L D ++
Sbjct: 336 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 395
Query: 631 C 631
C
Sbjct: 396 C 396
Score = 136 bits (342), Expect = 1e-34
Identities = 68/364 (18%), Positives = 124/364 (34%), Gaps = 35/364 (9%)
Query: 120 PACFNGEDEMFC-DEKQCLRSD-CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEA 177
P F + C D +C D C C N G+ C C L P C +
Sbjct: 26 PDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY 85
Query: 178 WGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK----NDSSPFVIFSNRHELRG 233
++ ++ + + T + S +D S +I S + L
Sbjct: 86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ--LDR 143
Query: 234 VDLRTFNVIALISSLKNT--IALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVV 291
+ + ++ +A+D + ++WTD + + A G +
Sbjct: 144 AHGVSSYDTVISRDIQAPDGLAVD----WIHSNIYWTDSVLGTVSVADTKGVKRK---TL 196
Query: 292 VQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWP 351
+ S + VD + +M+W W I+K G++G + LVT+NIQWP
Sbjct: 197 FRENGSKPRAIVVDPVHG--FMYWTDWGTPAK------IKKGGLNGVDIYSLVTENIQWP 248
Query: 352 SSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWI 411
+ + +D LYW DS L+++ S+ V+G R +L + R+ P
Sbjct: 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-----ILEDEKRLA----HPFSLAVF 299
Query: 412 GKNLYWVESNLDQIEVA-KLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRI 470
++W + + I A +L+G L + + +
Sbjct: 300 EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSN 359
Query: 471 ERCS 474
C
Sbjct: 360 GGCQ 363
Score = 100 bits (249), Expect = 1e-22
Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 36/240 (15%)
Query: 593 SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDL 652
C+ + CS LC + + G YKCQC +L K C+ S +F R
Sbjct: 41 DECQ-DPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV---R 95
Query: 653 EHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFE 712
+ + T IP + + L+ + A+ +IYW+D + + +
Sbjct: 96 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG--------- 146
Query: 713 FYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGE 772
V+ I P GLA+DWI N++ S + V + +G
Sbjct: 147 -------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL--GTVSVADTKGV 191
Query: 773 YQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
+ T+ SK +I V PV G M+W++ I+ ++G ++V++
Sbjct: 192 KRKTLFREN------GSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTEN 244
Score = 39.1 bits (90), Expect = 0.006
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 157 PRDMYLQPDLITCSYLHPCEAW----GTCSQDCEPS----VSNNSYKCTCHAGYELEPDM 208
P DM L +L ++ CE G C C P+ + + C C G L DM
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDM 393
Query: 209 FTCKSKS 215
+C +++
Sbjct: 394 RSCLTEA 400
Score = 38.3 bits (88), Expect = 0.010
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 131 CDEKQCLRSDCHHDCYNTPE------GFMCVCPRDMYLQPDLITC 169
C+ C + C P+ F C CP M L D+ +C
Sbjct: 352 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 33.7 bits (76), Expect = 0.24
Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 668 VFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVD-----------AVFEFYL- 715
+ PN + D + ++YW D + + + + GG + +++ AVFE +
Sbjct: 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVF 304
Query: 716 -----TPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMF 753
++ + G ++ + P + +
Sbjct: 305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 347
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 245 bits (626), Expect = 1e-74
Identities = 105/323 (32%), Positives = 172/323 (53%), Gaps = 31/323 (9%)
Query: 325 SSDGGIEKAGM-HGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSER 383
++ + +G+ + +V ++ +++ ++ ++YW D ++ + +E
Sbjct: 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69
Query: 384 TVSFNLEVLGSDSRVGIPNCRPE----DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLI 439
+ + L S P+ D W+G+ LYW +S ++IEV+ L G R+ L
Sbjct: 70 VQNVVVSGLLS----------PDGLACD--WLGEKLYWTDSETNRIEVSNLDGSLRKVLF 117
Query: 440 AGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL 499
+++ PRAIALDP G ++WTDW + P+IER M G R +I+ ++ WPNGL
Sbjct: 118 WQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSRFIIINSEI-----YWPNGL 171
Query: 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTN 559
TLDY+ ++YW DAK + IH DG + V+ SL HPFA+ LFE+ +YWTDW T+
Sbjct: 172 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV--KGSLPHPFALTLFEDILYWTDWSTH 229
Query: 560 SVIRANKWNGSDVTLIQRTLTQP-----FIYVNGVVKKSPCEMNNGNCSHLCLIG-MNGT 613
S++ NK+ G + I + P F +PC ++NG CSHLCL+ +
Sbjct: 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 289
Query: 614 YKCQCPHVMKLMSDNKTCQVADS 636
Y+C CP +KL+ + KTC+ +S
Sbjct: 290 YQCACPTGVKLLENGKTCKDGNS 312
Score = 153 bits (388), Expect = 2e-41
Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 29/273 (10%)
Query: 219 SSPFVIFSNRHELRGVDLRT--FNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIY 276
S+P ++++NR +LR VD N ++ L++ A+DF + + +++W+DV ++ I
Sbjct: 3 SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIK 60
Query: 277 NATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMH 336
++ VV +GL + +GLA DW+G+ LY W ++S IE + +
Sbjct: 61 RTEFNKT--ESVQNVVVSGLLSPDGLACDWLGEKLY--W-------TDSETNRIEVSNLD 109
Query: 337 GENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLN-TVESVRVDGSERTVSFNLEVLGSD 395
G R L + + P ++ +D + +YW D +E +DGS R + N
Sbjct: 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN------- 162
Query: 396 SRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRF 455
S + PN D + + LYW ++ L+ I + L G R+ ++ G + P A+ L
Sbjct: 163 SEIYWPNGLTLD--YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--E 218
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDL 488
+L+WTDW + I C+ + D+
Sbjct: 219 DILYWTDWSTH--SILACNKYTGEGLREIHSDI 249
Score = 96.7 bits (240), Expect = 5e-22
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSS 697
++++ R++R VD + + TI + + ++F ++ IYW+D +KR+
Sbjct: 6 LLLYANRRDLRLVDATNGKENA--TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 63
Query: 698 IVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVS 757
+Q VV +G+ P GLA DW+ + ++ S
Sbjct: 64 FNKT-------------------------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDS 98
Query: 758 SPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEM 817
++I V NL+G + + E L + +IA+ P G M+W++ + IE
Sbjct: 99 E--TNRIEVSNLDGSLRKVLFWQE------LDQPRAIALDPSSGFMYWTDWGEVPK-IER 149
Query: 818 AFMDGTKRETVVSQK 832
A MDG+ R +++ +
Sbjct: 150 AGMDGSSRFIIINSE 164
Score = 69.7 bits (170), Expect = 7e-13
Identities = 43/254 (16%), Positives = 76/254 (29%), Gaps = 57/254 (22%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
LL+ D + + + ++ + + IYW D +
Sbjct: 7 LLYANRRD-----LRLVDATNGKENAT----IVVGGLEDAAAVDFVFSHGLIYWSDVSEE 57
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
+I ++ + + L P +A +YWTD TN + +N L
Sbjct: 58 AIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 116
Query: 575 IQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVA 634
+ L QP + G + GM+G+
Sbjct: 117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--------------------- 155
Query: 635 DSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVK 694
II S +++ PN L D +K+YW D + N +
Sbjct: 156 SRFIIINS------------------------EIYWPNGLTLDYEEQKLYWADAKLNFIH 191
Query: 695 RSSIVGGQIQLVVD 708
+S++ G Q VV
Sbjct: 192 KSNLDGTNRQAVVK 205
Score = 57.8 bits (139), Expect = 4e-09
Identities = 33/196 (16%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 658 HTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQ------------IQL 705
++ + + + SP+ L D +K+YWTD E N ++ S++ G +
Sbjct: 68 ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 127
Query: 706 VVD------AVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSP 759
+D ++ P +R+ + G +++++ I P+GL +D+ Q ++ A +
Sbjct: 128 ALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK- 186
Query: 760 TQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAF 819
+ I NL+G + ++ +L ++ ++ + ++W++ + + +
Sbjct: 187 -LNFIHKSNLDGTNRQAVVK------GSLPHPFALTLF--EDILYWTDWSTHSI-LACNK 236
Query: 820 MDGTKRETVVSQKKYP 835
G + S P
Sbjct: 237 YTGEGLREIHSDIFSP 252
Score = 45.1 bits (106), Expect = 5e-05
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 164 PDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKN 217
+ G CS C S Y+C C G +L + TCK + +
Sbjct: 260 QQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
Score = 37.4 bits (86), Expect = 0.016
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 129 MFCDEKQCLRSDCHHDCYNTPE--GFMCVCPRDMYLQPDLITCSYLHPCEAW 178
+ C H C +P + C CP + L + TC +
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNSHHHH 316
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 236 bits (604), Expect = 4e-72
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 330 IEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNL 389
+E+ M + + L D ++YW D ++ + G E T
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---- 72
Query: 390 EVLGSDSRVGIPNCRPE----DNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMES 445
++ D PE D +G+ ++W +S LD+IEVAK+ G RR L + +
Sbjct: 73 -IIRQDLG------SPEGIALD--HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 446 PRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQL 505
PR I DP G L+WTDW+ P+IE M G +R ++ + +L PNGLT D
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-----GLPNGLTFDAFS 178
Query: 506 TRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRAN 565
+++ W+DA + + VL L +PFA+ + ++Y+TDW+TNSVI +
Sbjct: 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMD 235
Query: 566 KWNGSDVTLIQRTLTQPFIY 585
++ Q +Y
Sbjct: 236 LAISKEMDTFHP-HKQTRLY 254
Score = 114 bits (286), Expect = 2e-28
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 36/197 (18%)
Query: 638 FIIFSRPREIRGVDLEHPYYHTIPTISIP--QVFSPNNLNFDAANKKIYWTDQEYNEVKR 695
++F++ +I + LE + L FD +K +YWTD + R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 696 SSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIA 755
+S+ GG+ ++ + P G+A+D + + +F
Sbjct: 63 ASLHGGEPTTIIRQ--------------------------DLGSPEGIALDHLGRTIFWT 96
Query: 756 VSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTI 815
S +I V ++G + + L I PV+G ++W++ + I
Sbjct: 97 DSQL--DRIEVAKMDGTQRRVLFDT------GLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Query: 816 EMAFMDGTKRETVVSQK 832
E + MDGT R +
Sbjct: 149 ETSHMDGTNRRILAQDN 165
Score = 88.0 bits (218), Expect = 2e-19
Identities = 48/354 (13%), Positives = 89/354 (25%), Gaps = 109/354 (30%)
Query: 457 LLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSD 516
LLF IER + L GL D +YW D
Sbjct: 4 LLFAQTGK-----IERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTDWRTNSVIRANKWNGSDVTL 574
SI + G + ++ L P IAL ++WTD + + + A L
Sbjct: 59 SIGRASLHGGEPTTIIRQ--DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116
Query: 575 IQRTLTQP----------FIYVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKL 624
L P +Y + N N M+GT
Sbjct: 117 FDTGLVNPRGIVTDPVRGNLYW--------TDWNRDNPKIET-SHMDGT----------- 156
Query: 625 MSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKKIY 684
+ + + +L P N L FDA + ++
Sbjct: 157 ----------NRRILAQD--------NLGLP----------------NGLTFDAFSSQLC 182
Query: 685 WTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQLVVDAGISHPSGLA 744
W D + + + + V++ G+ +P +
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVLE---------------------------GLQYPFAVT 215
Query: 745 IDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAVWP 798
+ + + ++ +L + +++ I +
Sbjct: 216 SY----GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-----TRLYGITIAL 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 225 bits (573), Expect = 1e-66
Identities = 103/321 (32%), Positives = 152/321 (47%), Gaps = 24/321 (7%)
Query: 316 AFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVES 375
A ++ + + + L+ N++ +L + +++++W D L+ +
Sbjct: 40 ALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR 99
Query: 376 VRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFR 435
++GS + + P D W+ LYW +S +IEVA L G R
Sbjct: 100 ANLNGSNVEEVV-------STGLESPGGLAVD--WVHDKLYWTDSGTSRIEVANLDGAHR 150
Query: 436 RTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW 495
+ L+ +E PRAIAL P G ++WTDW + PRIE SM G R +I L W
Sbjct: 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHL-----FW 204
Query: 496 PNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTD 555
PNGLT+DY R+YW+DAK I DG V+S L HPFAI +FE+ +YWTD
Sbjct: 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVFEDSLYWTD 262
Query: 556 WRTNSVIRANKWNGSDVTLIQRTLTQPFIYV-----NGVVKKSPCEMNNGNCSHLCLIGM 610
W T S+ ANK+ G + +I+ L P K+ C NNG C+HLCL
Sbjct: 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPS- 321
Query: 611 NGTYKCQCPHVMKLMSDNKTC 631
Y C CP + + ++ C
Sbjct: 322 GQNYTCACPTGFRKI-NSHAC 341
Score = 161 bits (408), Expect = 6e-44
Identities = 101/316 (31%), Positives = 160/316 (50%), Gaps = 33/316 (10%)
Query: 174 PCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSNRHELRG 233
C G CSQ C S +++C C AGYEL PD +CK+ P ++F+NR ++R
Sbjct: 3 ECAEEGYCSQGCTN--SEGAFQCWCEAGYELRPDRRSCKA---LGPEPVLLFANRIDIRQ 57
Query: 234 VDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQ 293
V L+++L+N IALDF++ +VFW+DV D+I A L G SN++ VV
Sbjct: 58 VLPHRSEYTLLLNNLENAIALDFHH--RRELVFWSDVTLDRILRANLNG---SNVEEVVS 112
Query: 294 TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353
TGL + GLAVDW+ LY W ++S IE A + G +R L+ ++++ P +
Sbjct: 113 TGLESPGGLAVDWVHDKLY--W-------TDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163
Query: 354 LVIDYNQDILYWCDSHLNT-VESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
+ + + +YW D +E+ +DGS R + + + + PN D + G
Sbjct: 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWPNGLTID--YAG 214
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIER 472
+ +YWV++ IE A L G R+ +I+ + P AI + L+WTDW +K+ I
Sbjct: 215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDS--LYWTDWHTKS--INS 270
Query: 473 CSMSGEHRSVIVRVDL 488
+ I+R L
Sbjct: 271 ANKFTGKNQEIIRNKL 286
Score = 105 bits (262), Expect = 1e-24
Identities = 51/237 (21%), Positives = 99/237 (41%), Gaps = 40/237 (16%)
Query: 594 PCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLE 653
C G CS C G ++C C +L D ++C+ + ++ R L
Sbjct: 3 ECA-EEGYCSQGC-TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 654 HPYYHTIPTISIPQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEF 713
H +T+ + + + L+F + ++W+D + + R+++ G ++ VV
Sbjct: 61 HRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST---- 113
Query: 714 YLTPLSKRSSIVGGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEY 773
G+ P GLA+DW+ ++ S S+I V NL+G +
Sbjct: 114 ----------------------GLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGAH 149
Query: 774 QTTILSNESNDTSTLSKISSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVS 830
+ +L +L K +IA+ P++G ++W++ IE + MDG+ R +
Sbjct: 150 RKVLLW------QSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGSGRRIIAD 199
Score = 33.7 bits (76), Expect = 0.21
Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 46/322 (14%)
Query: 496 PNGLTLDYQLTRIYWIDAKSDSI----HTVTYDGKDHHVVLSNHDSLTHPFAIAL--FEN 549
G L + + + + ++L + A+
Sbjct: 26 EAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE 85
Query: 550 HVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF-IYVNGVVKKSPCEMNNGNCSHLCLI 608
V+W+D + ++RAN + ++ L P + V+ V K + S + +
Sbjct: 86 LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK--LYWTDSGTSRIEVA 143
Query: 609 GMNGTYKCQCPHVMKLMSDNKTCQVA---DSQFIIFSRPREIRGVDLEHPYYHTIPTISI 665
++G + V+ S K +A I ++ ++ I+
Sbjct: 144 NLDGAH----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 199
Query: 666 PQVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIV 725
+F PN L D A +++YW D +++ + +R+++
Sbjct: 200 THLFWPNGLTIDYAGRRMYWVDAKHHVI--------------------------ERANLD 233
Query: 726 GGQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDT 785
G + V+ G+ HP + + + + I N I+ N+ +
Sbjct: 234 GSHRKAVISQGLPHPFAITVF----EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 289
Query: 786 STLSKISSIAVWPVKGKMFWSN 807
+ + K + +N
Sbjct: 290 MDIHTLHPQRQPAGKNRCGDNN 311
Score = 33.3 bits (75), Expect = 0.33
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
G C+ C PS +Y C C G+ + C
Sbjct: 312 GGCTHLCLPS--GQNYTCACPTGFRKI-NSHAC 341
Score = 32.9 bits (74), Expect = 0.45
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 129 MFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
+ C H C + + + C CP C+
Sbjct: 302 AGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSH-ACA 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 107 bits (267), Expect = 1e-25
Identities = 36/316 (11%), Positives = 95/316 (30%), Gaps = 46/316 (14%)
Query: 265 VFWTDVID-DKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPS 323
VF+++ D ++Y + G+++ + + +++ S +
Sbjct: 28 VFFSNTNDNGRLYAMNIDGSNIHKLS----NDTAMYINADKNYVYYVRNNNQKITSQTFF 83
Query: 324 NSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWC---DSHLNTVESVRVDG 380
+ + + +G + L + S + +Y+ ++ +R+DG
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYAS-----LIGNYIYYLHYDTQTATSLYRIRIDG 138
Query: 381 SERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIA 440
E+ N + + + Y+ Q+ + Q
Sbjct: 139 EEKKKIKNHYLFTCN--------------TSDRYFYYNNPKNGQLYRYDTASQSEALFYD 184
Query: 441 GDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLT 500
+ P + +++ D + I +++ + V+ + N
Sbjct: 185 CNCYKPVVLD----DTNVYYMDVNRD-NAIVHVNINNPNPVVLT-----EANIEHYNV-- 232
Query: 501 LDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNS 560
Y Y + ++ V DG + I + +VY+TD+ +N
Sbjct: 233 --YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNK 285
Query: 561 VIRANKWNGSDVTLIQ 576
+ N + +Q
Sbjct: 286 EYCTSTQNPDTIKALQ 301
Score = 58.2 bits (140), Expect = 3e-09
Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 41/270 (15%)
Query: 353 SLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIG 412
L + + ++ + + + ++ +DGS + N
Sbjct: 19 GLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHK--------------LSNDTAMYINADK 64
Query: 413 KNLYWVESNLDQIEVAKLSGQFRRTLIAGDME--------SPRAIALDPRFGLLFWTDW- 463
+Y+V +N +I R +L I +++ +
Sbjct: 65 NYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYD 124
Query: 464 DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTY 523
A + R + GE + I T + Y+ + K+ ++
Sbjct: 125 TQTATSLYRIRIDGEEKKKIKN----------HYLFTCNTSDRYFYYNNPKNGQLYRYDT 174
Query: 524 DGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPF 583
+ + + + L + +VY+ D ++ I N + ++ + +
Sbjct: 175 ASQSEALFYDCNCY----KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY 230
Query: 584 IYVNGVVKKSPCEMNNGNCSHLCLIGMNGT 613
++ G+ LC++ +GT
Sbjct: 231 NVYGSLIFYQ----RGGDNPALCVVKNDGT 256
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/341 (10%), Positives = 82/341 (24%), Gaps = 89/341 (26%)
Query: 493 GAWPNGLTLDYQLTRIYWID-AKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHV 551
G N +++ + + ++ + DG + H + ++ I +N+V
Sbjct: 13 GNLYNAGLFCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT-----AMYINADKNYV 67
Query: 552 YWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIGMN 611
Y+ + ++ + + LC I N
Sbjct: 68 YYVRNNNQKITSQTFFSY-------------------------------DRNSLCRIKRN 96
Query: 612 GTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSP 671
G L D +I + L Y I ++ +
Sbjct: 97 GHGSTV------LDPDPCIYASLIGNYIYYLHYDTQTATSL---YRIRIDGEEKKKIKNH 147
Query: 672 NNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVGGQIQL 731
+ +++ Y+ + + ++ R L
Sbjct: 148 YLFTCNTSDRYFYYNNPKNGQL--------------------------YRYDTASQSEAL 181
Query: 732 VVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKI 791
D P L + + + IV N+ + I
Sbjct: 182 FYDCNCYKPVVLDDTNVY-----YMDVNRDNAIVHVNINNPNPVVLTEAN---------I 227
Query: 792 SSIAVWPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQK 832
V+ +F+ + + DGT + + +
Sbjct: 228 EHYNVYG--SLIFYQRGGDN-PALCVVKNDGTGFKELAKGE 265
>2fyj_A Low-density lipoprotein receptor-related protein 1; double
module, complement type repeat, calcium, beta-2
hairpin, loop-structures; NMR {Homo sapiens} PDB:
2fyl_B
Length = 82
Score = 89.3 bits (222), Expect = 8e-22
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI W CD D+DC D SDE A + FTCN RCI + W CD DCG D
Sbjct: 17 CIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG-RCININWRCDNDNDCG--D 73
Query: 63 TSDEDHCVN 71
SDE C +
Sbjct: 74 NSDEAGCSH 82
Score = 80.4 bits (199), Expect = 1e-18
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 24/102 (23%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
R C + F+C RCIP++W CD DCG D SDE+
Sbjct: 3 RTCPPNQFSCASG-RCIPISWTCDLDDDCG---------------DRSDESASCAYPTC- 45
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
+F C + CI CD + C + DE C
Sbjct: 46 -----FPLTQFTCNN--GRCININWRCDNDNDCGDNSDEAGC 80
Score = 49.6 bits (119), Expect = 7e-08
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT-- 148
SA C P++F C CIP + CD + C + DE C N
Sbjct: 1 SARTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRC 58
Query: 149 -PEGFMC 154
+ C
Sbjct: 59 ININWRC 65
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 88.9 bits (221), Expect = 8e-22
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
CI + CD D DC DGSDE C C + F CN + CIP WACD PDC D
Sbjct: 15 CISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCE--D 69
Query: 63 TSDEDHC 69
SDE
Sbjct: 70 GSDEWPQ 76
Score = 85.8 bits (213), Expect = 1e-20
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRT 89
+ C ++ F C+ +CI + CD DC D SDE +C
Sbjct: 1 KTCSQAEFRCH-DGKCISRQFVCDSDRDCL---------------DGSDEASCP------ 38
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P F C TCIP+ CD +P C +G DE
Sbjct: 39 --VLTCGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQ 76
Score = 50.7 bits (122), Expect = 3e-08
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQC 136
C EF C D CI + VCD + C +G DE C C
Sbjct: 3 CSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTC 42
Score = 48.0 bits (115), Expect = 2e-07
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQ 28
CI W CD D DC+DGSDE + C+
Sbjct: 54 CIPQLWACDNDPDCEDGSDEWPQRCR 79
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 76.8 bits (188), Expect = 6e-16
Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 34/201 (16%)
Query: 8 WKCDGDEDCKDGS-DELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSD 65
+ D K GS E +D CDE C + +CI + CDG DC
Sbjct: 30 DRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCR------ 83
Query: 66 EDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPK-------ALVCDG 118
+ DE +CT P +F C + A
Sbjct: 84 ---------NGEDEKDCT--------LPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSS 126
Query: 119 EPACFNGEDEMFCDEKQCLRSDCHHDCYNTP-EGFMCVCPRDMYLQPDLITCSYLHPCEA 177
A F ++ + +D + P +G + + P E
Sbjct: 127 IAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPE-EDGLGLVGEF 185
Query: 178 WGTCSQDCEPSVSNNSYKCTC 198
G + + + C
Sbjct: 186 DGYNFDRFVGHIVHELSEEVC 206
Score = 62.2 bits (150), Expect = 6e-11
Identities = 30/157 (19%), Positives = 41/157 (26%), Gaps = 23/157 (14%)
Query: 57 DCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVC 116
+ L+D D + P+C+ HE C CI K VC
Sbjct: 25 ESLLDDRLDPKRIRKAGSLRHRVEELED--------PSCDEHEHQCGGDDPQCISKLFVC 76
Query: 117 DGEPACFNGEDEMFCDEKQCL---------------RSDCHHDCYNTPEGFMCVCPRDMY 161
DG C NGEDE C R H
Sbjct: 77 DGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIAD 136
Query: 162 LQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTC 198
L + S E+ + D E S +++
Sbjct: 137 LHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHP 173
Score = 58.3 bits (140), Expect = 1e-09
Identities = 17/158 (10%), Positives = 31/158 (19%), Gaps = 26/158 (16%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETL-RCIPLAWACDGQPDCGLN 61
CI + CDG DC++G DE + C F + C
Sbjct: 69 CISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDVCFDHCTKR------------- 113
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121
+ + S E D + + +
Sbjct: 114 ----RPEHMTLAFESSSIAAFFTPIADLHVHIEIESET-DEDESEVSMPADGEYSFADHR 168
Query: 122 CF-----NGEDEMFCDEKQCLRSDCHHDCYNTPEGFMC 154
+ + + +C
Sbjct: 169 LTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVC 206
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 71.4 bits (175), Expect = 1e-15
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 25/95 (26%)
Query: 25 EHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTH 84
+ + C S F+C T C+P W CDG DC D +DE+
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA---------------DGADESIA-- 44
Query: 85 SGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGE 119
C + + +
Sbjct: 45 --------AGCLYNSTGSGSGSGSTEELRVRLASH 71
Score = 54.9 bits (132), Expect = 9e-10
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDC 58
C+ W CDGD+DC DG+DE C + + + L
Sbjct: 21 VCVPERWLCDGDKDCADGADESIAAG----CLYNSTGSGSGSGSTEELRVRLASHLRK 74
Score = 49.1 bits (117), Expect = 9e-08
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPE 150
C P F C C+P+ +CDG+ C +G DE + +T E
Sbjct: 5 EGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE 63
Query: 151 G-FMCVCP 157
Sbjct: 64 LRVRLASH 71
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 79.2 bits (195), Expect = 2e-15
Identities = 39/164 (23%), Positives = 50/164 (30%), Gaps = 34/164 (20%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLND 62
C + G +D D + + F C + I ACDG
Sbjct: 178 CTFTKRRTMGYQDFADVVCYTQKADS---PMDDFFQCV-NGKYISQMKACDG-------- 225
Query: 63 TSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
+NDC D SDE C C+ F C+ CIP C+GE C
Sbjct: 226 -------INDCGDQSDELCCKA----------CQGKGFHCKS--GVCIPSQYQCNGEVDC 266
Query: 123 FNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDL 166
GEDE+ C S + R L P L
Sbjct: 267 ITGEDEVGCAGFA---SVAQEETEILTADMDAERRRIKSLLPKL 307
Score = 68.8 bits (168), Expect = 4e-12
Identities = 29/183 (15%), Positives = 42/183 (22%), Gaps = 36/183 (19%)
Query: 24 AEHCQDRKCDESHFTCNET--LRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETN 81
+C H ET C G D D ++ + +
Sbjct: 155 DLSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFA------------DVVCYTQKAD 202
Query: 82 CTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC-----DEKQC 136
F C + I + CDG C + DE+ C C
Sbjct: 203 S------------PMDDFFQCVN--GKYISQMKACDGINDCGDQSDELCCKACQGKGFHC 248
Query: 137 LRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCE-PSVSNNSYK 195
C Y C+ D S T D E + + K
Sbjct: 249 KSGVCIPSQYQCNGEVDCITGED--EVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Query: 196 CTC 198
+C
Sbjct: 307 LSC 309
Score = 58.8 bits (142), Expect = 5e-09
Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLN 61
I CDG DC D SDE C + C F C + CIP + C+G+ DC
Sbjct: 215 KYISQMKACDGINDCGDQSDE--LCC--KACQGKGFHCKSGV-CIPSQYQCNGEVDC--I 267
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHE 99
DE C + +ET +
Sbjct: 268 TGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP 305
Score = 38.7 bits (90), Expect = 0.007
Identities = 33/225 (14%), Positives = 60/225 (26%), Gaps = 39/225 (17%)
Query: 20 SDELAEHCQDRKCDESHFTCNETL-----RCI--------PLAWACDGQPDCGLNDTSDE 66
D + + C +K +H +C++ RCI P +G C N S
Sbjct: 8 EDLVEKKCLAKK--YTHLSCDKVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFP 65
Query: 67 DHC-------VNDCTDWSDETNCTHSGNRTIS-APACEPHEFDCQDVLRTCIPKALVCDG 118
+C ++ T + + CT G ++S E + L +C
Sbjct: 66 TYCQQKSLECLHPGTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKS 125
Query: 119 EPACFNGED-EMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS----YLH 173
++ + + C +T F + + C L
Sbjct: 126 S---WSMREANVAC------LDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETSLA 176
Query: 174 PC--EAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
C T V + K + S+ K
Sbjct: 177 ECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMK 221
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 71.6 bits (176), Expect = 3e-15
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 122 CFNGEDEMFC-DEKQCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178
+CL ++ C + C + G+ C+CP L C + C+
Sbjct: 17 TTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDP 75
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
TCSQ C YKC C G++L+P CK
Sbjct: 76 DTCSQLCVNLE--GGYKCQCEEGFQLDPHTKACK 107
Score = 58.5 bits (142), Expect = 9e-11
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 142 HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW-GTCSQDCEPSVSNNSYKCTCHA 200
HH ++ + ++Y Q + C G CS C Y+C C
Sbjct: 3 HHHHHHPMSDYDIPTTENLYFQ----GAMGTNECLDNNGGCSYVCNDLK--IGYECLCPD 56
Query: 201 GYELEPDMFTC 211
G++L C
Sbjct: 57 GFQLVAQR-RC 66
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C+ + CS LC + + G YKCQC +L K C+
Sbjct: 72 CQDPDT-CSQLC-VNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 39.2 bits (92), Expect = 5e-04
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NNG CS++C + Y+C CP +L++ + C+
Sbjct: 32 CLDNNGGCSYVC-NDLKIGYECLCPDGFQLVAQ-RRCE 67
Score = 36.9 bits (86), Expect = 0.003
Identities = 18/125 (14%), Positives = 28/125 (22%), Gaps = 34/125 (27%)
Query: 52 CDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHE-------FDCQD 104
D + + + C++ N C + C+D
Sbjct: 9 PMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCED 68
Query: 105 VLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
+ DE C + C C N G+ C C L P
Sbjct: 69 I---------------------DE--CQDP----DTCSQLCVNLEGGYKCQCEEGFQLDP 101
Query: 165 DLITC 169
C
Sbjct: 102 HTKAC 106
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 71.5 bits (174), Expect = 3e-14
Identities = 29/191 (15%), Positives = 44/191 (23%), Gaps = 34/191 (17%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDE 66
D D+ + ++ CDE C + CI CDG+ DC D SDE
Sbjct: 30 LTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCR--DGSDE 87
Query: 67 DHCV------------------NDCTDWSDETNCTH----SGNRTISAPACEPHEFDCQD 104
D C D + + +
Sbjct: 88 DPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYEL 147
Query: 105 VLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP 164
G E + + Q D +N + C
Sbjct: 148 DEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICD-FNLGDDDHADC-------- 198
Query: 165 DLITCSYLHPC 175
++ S L C
Sbjct: 199 KIVVPSSLFVC 209
Score = 57.2 bits (137), Expect = 3e-09
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 59 GLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDG 118
+ + ++ D + + C+ HE +C+ + CI L CDG
Sbjct: 22 DIEEEYNKLTHDVDKKTIRQLKARISN----LEEHHCDEHESECRGDVPECIHDLLFCDG 77
Query: 119 EPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCP 157
E C +G DE C + + + +
Sbjct: 78 EKDCRDGSDED--------PETCSLNITHVGSSYTGLAT 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 76.0 bits (186), Expect = 4e-14
Identities = 91/667 (13%), Positives = 176/667 (26%), Gaps = 201/667 (30%)
Query: 13 DEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVN- 71
+ DCKD D + D + + + L W + + + +E +N
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 72 ---------DCTDWSDET-------NCTHSGNRTISA---PACEPHEFDCQDVLRTCIPK 112
+ S T + ++ N+ + +P+ LR + +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLE 146
Query: 113 A-----LVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLI 167
++ DG G K + D C ++
Sbjct: 147 LRPAKNVLIDGVLGS--G--------KTWVALDVCLS-----YKVQCKMDFKIF------ 185
Query: 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFVIFSN 227
W P + + +++P+ + S N I
Sbjct: 186 ----------WLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSN------IKLR 226
Query: 228 RHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDKIYNA------TLI 281
H ++ R + L + L +V + K +NA L+
Sbjct: 227 IHSIQAELRRLLKSKPYENCL---LVLL-------------NVQNAKAWNAFNLSCKILL 270
Query: 282 -GNSLSNIDVV------------VQTGLSTAEGLAV--DWIGKNLYMFWAFWSLSPSNSS 326
D + L+ E ++ ++ L P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ------DL-PREVL 323
Query: 327 DGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYW----CDSHLNTVE-SVRV-DG 380
+P I + + D W CD +E S+ V +
Sbjct: 324 TT------------NPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 381 SE-RTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIE--VAKLSGQFRRT 437
+E R + L V + + P L +L W + + V KL + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHI------PTILL----SLIWFDVIKSDVMVVVNKL---HKYS 415
Query: 438 LIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPN 497
L+ + I++ + + K ++ HRS++ ++ + +
Sbjct: 416 LVEKQPKEST-ISIP---SIYL----ELKVKLENEYAL---HRSIVDHYNIP--KTFDSD 462
Query: 498 GLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIALFENHVYWTDWR 557
L Y Y + G HH+ H + LF V+ D+R
Sbjct: 463 DLIPPYLDQYFYS------------HIG--HHLKNIEHPER-----MTLFRM-VF-LDFR 501
Query: 558 -TNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSP---------------CEMNNGN 601
IR + + I TL Q Y + P E N
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 602 CSHLCLI 608
+ L+
Sbjct: 562 SKYTDLL 568
Score = 56.0 bits (134), Expect = 4e-08
Identities = 74/491 (15%), Positives = 134/491 (27%), Gaps = 170/491 (34%)
Query: 254 LDFYYTPTA-NMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY 312
D + + ID I + + +L ++ + + + N Y
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-Y 91
Query: 313 MF----WAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYN--------- 359
F PS + M+ E R L N + YN
Sbjct: 92 KFLMSPIKTEQRQPSMMTR-------MYIEQRDRLYNDN-----QVFAKYNVSRLQPYLK 139
Query: 360 -QDILYWCDSHLNTVESVRVDG---SERTVSFNLEVLGSDSR----------VGIPNC-R 404
+ L L ++V +DG S +T L+V S + + NC
Sbjct: 140 LRQALL----ELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 405 PEDNLWIGKNLYW-VESNLDQ---------IEVAKLSGQFRRTLIAGDMESPRA-IALDP 453
PE L + + L + ++ N + + + + RR L + L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLL- 251
Query: 454 RFGLLFWTD-WDSKAPRIE----RCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRI 508
+ ++KA C ++ LLT+R Q+T
Sbjct: 252 --------NVQNAKA--WNAFNLSC-----------KI-LLTTR---------FKQVT-- 278
Query: 509 YWIDAKSDSIHTVTYDGKDHHVVLSNH-DSLTHPFAIALFENHVYWTDWRTNSVIRANKW 567
D + T H+ L +H +LT +L
Sbjct: 279 -------DFLSAATT----THISLDHHSMTLTPDEVKSLLLK------------------ 309
Query: 568 NGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCLIG-----MNGTYKCQCPHVM 622
Y++ + P E+ N L +I T+ +
Sbjct: 310 -----------------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWK 348
Query: 623 KLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANKK 682
+ D T + S + P E R + + VF P + +
Sbjct: 349 HVNCDKLTTIIESS--LNVLEPAEYR------KMFDRL------SVF-PPSAHIPTILLS 393
Query: 683 IYWTDQEYNEV 693
+ W D ++V
Sbjct: 394 LIWFDVIKSDV 404
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 1e-13
Identities = 75/418 (17%), Positives = 135/418 (32%), Gaps = 148/418 (35%)
Query: 212 KSKSKNDSSPFVIF----SNRH---ELRGVDL-RTFN--VIALISS--------LKNTIA 253
++ + ++ IF + ELR DL +T++ V LI ++ T+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 254 LDFYYTPTANMVFW---TDVIDDKIYNAT------LIG-NSLSNIDVVVQT--------- 294
+ +T N++ W DK Y + LIG L++ V +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 295 ----GLST-AEGL--AV------DWIGKNLY------MFWAFW------------SLSPS 323
G + ++GL AV W ++ + + F+ SL PS
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSW--ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 324 NSSDGGIEKAGMHGENR-SPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSE 382
D + + E SP+++ + + Q+ + ++N S + +
Sbjct: 323 ILED-----SLENNEGVPSPMLS---------ISNLTQEQV---QDYVNKTNS-HLPAGK 364
Query: 383 R-TVS-FNLEVLGSDSRV--GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL 438
+ +S N G+ + V G P P+ LY + L + + Q R
Sbjct: 365 QVEISLVN----GAKNLVVSG-P---PQS-------LYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 439 IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNG 498
S R + RF L +P H LL A
Sbjct: 410 ------SERKLKFSNRF--LPVA-----SP---------FHSH------LLVP--ASD-L 438
Query: 499 LTLDYQLTRIYWIDAKSDSIHTV--TYDGKDHHVVLSNHDSLTHPFAIALFENHVYWT 554
+ D + + +AK I V T+DG D + S++ + V W
Sbjct: 439 INKDLVKNNVSF-NAKDIQI-PVYDTFDGSD---LRVLSGSISERIVDCIIRLPVKWE 491
Score = 63.5 bits (154), Expect = 2e-10
Identities = 66/357 (18%), Positives = 118/357 (33%), Gaps = 95/357 (26%)
Query: 530 VVLSNHDSLTHPFAI--ALF-------ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLT 580
+ LS H SL H + A F E T ++ + L+ +
Sbjct: 9 LTLS-HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-PTTPAELVGK--- 63
Query: 581 QPFI-YVNGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCP-H--VMKLMSDNKTCQVADS 636
F+ YV+ +V+ S +LCL Y H KL+ +N T V +
Sbjct: 64 --FLGYVSSLVEPSKVG-QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK-T 119
Query: 637 QFIIFSRPREIRGVDLEHPYYHTIPTISIPQVFSPNNLNFDAANK---KIYWTDQEYNEV 693
+ +I + Y P N+ F A + ++
Sbjct: 120 KELIKN-------------YITARIMAKRPFDKKSNSALFRAVGEGNAQLV--------- 157
Query: 694 KRSSIVGGQ--IQLVVD---AVFEFY---LTPLSKRSS-IVGGQIQLVVDAGISHPSGLA 744
+I GGQ + +++ Y + L K S+ + I+ +DA GL
Sbjct: 158 ---AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 745 I-DWIAQN---------MFIAVSSP----TQ--SKIVVCNLEGEYQTTILSNESNDTSTL 788
I +W+ + I +S P Q +V L G + L + +
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGH 273
Query: 789 SK--ISSIAV-----WPVKGKMFWSNVTKQVVTIEMAFMDGTKRETVVSQKKYPAVT 838
S+ ++++A+ W F+ +V K I + F G + + YP +
Sbjct: 274 SQGLVTAVAIAETDSWES----FFVSVRK---AITVLFFIGVR-----CYEAYPNTS 318
Score = 35.4 bits (81), Expect = 0.096
Identities = 50/298 (16%), Positives = 97/298 (32%), Gaps = 93/298 (31%)
Query: 144 DCYNTPEGFMCVCPR-DMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAG- 201
D Y T + V R D + + + +G D V NN T H G
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFK------------DTYGFSILDI---VINNPVNLTIHFGG 1678
Query: 202 ------YELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVI-----ALISSLKN 250
E M ++ IF + ++ + + L+S+ +
Sbjct: 1679 EKGKRIRENYSAM-IFETIVDGKLKTEKIF------KEINEHSTSYTFRSEKGLLSATQF 1731
Query: 251 T-IALDFYYTPTANMVFWTD------VIDDKI--------YNATL--IGNSLS---NIDV 290
T AL + D + D Y A L + + +S ++V
Sbjct: 1732 TQPAL-T----LMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-LASLADVMSIESLVEV 1785
Query: 291 VVQTGLSTAEGLAVDWIGKNLY-MFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQ 349
V G++ + D +G++ Y M +++P + ++A V + +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI----AINPGRVAASFSQEA-------LQYVVERVG 1834
Query: 350 WPSSLVID---YN----Q----------DILYWCDSHLNTVESVRVDGSERTVSFNLE 390
+ +++ YN Q D + + LN ++ ++D E S +LE
Sbjct: 1835 KRTGWLVEIVNYNVENQQYVAAGDLRALDTV---TNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 30.8 bits (69), Expect = 2.6
Identities = 49/290 (16%), Positives = 88/290 (30%), Gaps = 117/290 (40%)
Query: 609 GMNGTYKCQCPHVMKLMSDNKTCQ-V---ADSQF----------IIFSRPREI------- 647
GM G M L +K Q V AD+ F I+ + P +
Sbjct: 1630 GM-G---------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 648 RGVDLEHPY----YHTIPTISIP--QVF-----SPNNLNFDAANKKIYWTD--Q------ 688
+G + Y + TI + ++F + F + + T Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 689 EY--NEVKRSSIVGGQIQLVVDAVF------EF--------YLTP------LSKRSSIVG 726
E E +S G I DA F E+ ++ + R G
Sbjct: 1740 EKAAFEDLKSK---GLIPA--DATFAGHSLGEYAALASLADVMSIESLVEVVFYR----G 1790
Query: 727 GQIQLVV---DAGISHPSGLAIDWIAQNMFIAVSSPTQSKIV---------VC-----NL 769
+Q+ V + G S+ +AI+ + + S +V + N+
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAIN--PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 770 EGEYQTTILSNESNDTSTLS------KISSIAVW---------PVKGKMF 804
E Q + + + T++ K+ I + V+G +F
Sbjct: 1849 EN--QQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 28.9 bits (64), Expect = 9.1
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 18/90 (20%)
Query: 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT-------HPFAIALFENHVY 552
T + + I + + +IH + G+ + N+ ++ +F+
Sbjct: 1656 TYGFSILDIVINNPVNLTIH---FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE--- 1709
Query: 553 WTDWRTNSVIRANKWNGSDVTLIQRTLTQP 582
+ + S + L TQP
Sbjct: 1710 -INEHSTSYT----FRSEKGLLSATQFTQP 1734
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 67.2 bits (163), Expect = 1e-12
Identities = 18/154 (11%), Positives = 34/154 (22%), Gaps = 27/154 (17%)
Query: 7 YWKCDGDEDCKDGSDELAEHCQDRKCDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSD 65
K D + + + + + C++ F C CI CDG DC D
Sbjct: 29 AEKIDPEHFVSEIDARVTK-IEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 66 EDHCVN----------------DCTDWSDETNCTH-SGNRTISAPACEPH------EFDC 102
D C C D + ++
Sbjct: 88 PDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELE 147
Query: 103 QDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQC 136
+ + + G + + +
Sbjct: 148 RHGE--NVTSSFNAKGYYNFASRRLILLPTDDHD 179
Score = 56.4 bits (135), Expect = 5e-09
Identities = 26/169 (15%), Positives = 36/169 (21%), Gaps = 22/169 (13%)
Query: 67 DHCVNDCTDWSDETNCTHSGNRTISA---------PACEPHEFDCQDVLRTCIPKALVCD 117
D + DE + CE F C + CI LVCD
Sbjct: 16 DRIIEKLRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCD 75
Query: 118 GEPACFNG--EDEMFCDEKQCLRSDCH------HDCYNTPEGFMCVCPRDMYLQPDLITC 169
G C N ED CD + H C + + +
Sbjct: 76 GHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTAR 135
Query: 170 SYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKND 218
+L + S Y +D
Sbjct: 136 IWLRALVESELERHGENVTSS-----FNAKGYYNFASRRLILLPTDDHD 179
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 61.1 bits (149), Expect = 6e-12
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNN--SYKCTC 198
C N P F C CP +C + C C+Q C N Y C C
Sbjct: 14 GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCV----NYPGGYTCYC 68
Query: 199 HA--GYELEPDMFTCK 212
G++L D +C+
Sbjct: 69 DGKKGFKLAQDQKSCE 84
Score = 39.9 bits (94), Expect = 2e-04
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 595 CEMNNGNC-SHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C + C + +C + G ++C+CP + +K+C+
Sbjct: 6 CSLKPSICGTAVC-KNIPGDFECECPEGYRYNLKSKSCE 43
Score = 33.8 bits (78), Expect = 0.028
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 596 EMNNGNCSHLCLIGMNGTYKCQCPHVM--KLMSDNKTCQ 632
E + C+ LC + G Y C C KL D K+C+
Sbjct: 47 ECSENMCAQLC-VNYPGGYTCYCDGKKGFKLAQDQKSCE 84
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 60.1 bits (146), Expect = 6e-12
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
+ + C S F+C T C+P W CDG DC D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCA--DGADESIAAG 44
Score = 46.6 bits (111), Expect = 3e-07
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C P F C C+P+ +CDG+ C +G DE
Sbjct: 3 EGKTCGPSSFSCPGTHV-CVPERWLCDGDKDCADGADESIA 42
Score = 42.8 bits (101), Expect = 7e-06
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
C+ W CDGD+DC DG+DE
Sbjct: 19 VCVPERWLCDGDKDCADGADES 40
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 57.0 bits (138), Expect = 7e-11
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C + F C + CI + CDG DC D SDE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCR--DNSDEAGC 42
Score = 46.2 bits (110), Expect = 5e-07
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEK 134
C +F C D +CI CDG C + DE C +
Sbjct: 7 CTSAQFKCADG-SSCINSRYRCDGVYDCRDNSDEAGCPTR 45
Score = 45.0 bits (107), Expect = 1e-06
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
+CI + ++CDG DC+D SDE
Sbjct: 19 SCINSRYRCDGVYDCRDNSDEA 40
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 56.5 bits (137), Expect = 8e-11
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CIPL W CDG DC D+SDE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCM--DSSDEKSC 39
Score = 46.5 bits (111), Expect = 3e-07
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
C EF C+ CIP CDG+ C + DE C+
Sbjct: 2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 43.8 bits (104), Expect = 3e-06
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
CI W+CDGD DC D SDE + C
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDE--KSC 39
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 62.7 bits (153), Expect = 1e-10
Identities = 32/216 (14%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 351 PSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLW 410
P + + ++ ++ N + + +DG + P+ + L
Sbjct: 17 PYGITVS-DKGKVWITQHKANMISCINLDGKITEYP-----------LPTPDAKVMC-LT 63
Query: 411 IGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAP 468
I +++ E+ ++I G + + +P I P G +++T+ +
Sbjct: 64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGN-- 120
Query: 469 RIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDH 528
RI R + G+ +R L ++G++P+ +TL +++ + ++++I +T G
Sbjct: 121 RIGRITDDGK-----IREYELPNKGSYPSFITLGSD-NALWFTENQNNAIGRITESGDIT 174
Query: 529 HVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563
+ + P I ++ +++ + N + R
Sbjct: 175 EFKIP--TPASGPVGITKGNDDALWFVEIIGNKIGR 208
Score = 53.5 bits (129), Expect = 1e-07
Identities = 45/263 (17%), Positives = 91/263 (34%), Gaps = 39/263 (14%)
Query: 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324
V++T+ +KI T G + S G+ G +++ +
Sbjct: 70 VWFTENAANKIGRITKKGIIKE---YTLPNPDSAPYGITEGPNG-DIWF---------TE 116
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
+ I + G+ R + +PS + + + + L++ ++ N + R+ S
Sbjct: 117 MNGNRIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAI--GRITESGDI 173
Query: 385 VSFNLEVLGSDSRVGIPNCRPEDNLWIGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGD 442
F + S P + G L++VE ++I SG+ I
Sbjct: 174 TEFKIPTPAS---------GPVG-ITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP 223
Query: 443 MESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502
P AI L++T+W + +I R + + + + + A P+G+ D
Sbjct: 224 NARPHAITAGAG-IDLWFTEWGAN--KIGRLTSNNI-----IEEYPIQIKSAEPHGICFD 275
Query: 503 YQLTRIYWIDAKSDSIHTVTYDG 525
W + D I +T
Sbjct: 276 ---GETIWFAMECDKIGKLTLIK 295
Score = 46.6 bits (111), Expect = 2e-05
Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 430 LSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLL 489
+ + + + P I + + G ++ T + I ++ G+ L
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDK-GKVWITQHKAN--MISCINLDGKITEY-----PL 52
Query: 490 TSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL-FE 548
+ A LT+ +++ + ++ I +T G + + + P+ I
Sbjct: 53 PTPDAKVMCLTISSD-GEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPN 109
Query: 549 NHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVV 590
+++T+ N + R D + + L Y + +
Sbjct: 110 GDIWFTEMNGNRIGRIT----DDGKIREYELPNKGSYPSFIT 147
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 62.3 bits (152), Expect = 1e-10
Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 27/218 (12%)
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408
P + +++ N + +D S R F + + +
Sbjct: 20 SGPYGITSS-EDGKVWFTQHKANKI--SSLDQSGRIKEFEVPTPDA---------KVMC- 66
Query: 409 LWIGK--NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSK 466
L + ++++ E+ ++I G F + P I G +++T +
Sbjct: 67 LIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGD 125
Query: 467 APRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGK 526
RI + + G I D L ++G++P +TL +++ + +++SI +T GK
Sbjct: 126 --RIGKLTADGT----IYEYD-LPNKGSYPAFITLGSD-NALWFTENQNNSIGRITNTGK 177
Query: 527 DHHVVLSNHDSLTHPFAIALFEN-HVYWTDWRTNSVIR 563
L + P I + +++ + N + R
Sbjct: 178 LEEYPLP--TNAAAPVGITSGNDGALWFVEIMGNKIGR 213
Score = 51.2 bits (123), Expect = 6e-07
Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 34/239 (14%)
Query: 265 VFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324
+++T+ +KI + G + S G+ G +++ +
Sbjct: 75 IWFTENGANKIGKLSKKGGFTE---YPLPQPDSGPYGITEGLNG-DIWF---------TQ 121
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
+ I K G + +P+ + + + + L++ ++ N++ + G
Sbjct: 122 LNGDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEE 180
Query: 385 VSFNLEVLGSDSR-VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDM 443
+ + VGI + LW VE ++I +G+ I
Sbjct: 181 YPLP----TNAAAPVGI-TSGNDGALWF------VEIMGNKIGRITTTGEISEYDIPTPN 229
Query: 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLD 502
P AI +++T+W + +I R + ++ L + A P+G+T
Sbjct: 230 ARPHAITAGKN-SEIWFTEWGAN--QIGRITNDNT-----IQEYQLQTENAEPHGITFG 280
Score = 46.2 bits (110), Expect = 3e-05
Identities = 21/165 (12%), Positives = 53/165 (32%), Gaps = 16/165 (9%)
Query: 427 VAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRV 486
A ++ ++ P I G +++T + +I SG +
Sbjct: 3 EAWMNFYLEEFNLSIPDSGPYGITSSED-GKVWFTQHKAN--KISSLDQSGRIKEF---- 55
Query: 487 DLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLTHPFAIAL 546
+ + A L + I++ + ++ I ++ G + P+ I
Sbjct: 56 -EVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKKGG--FTEYPLPQPDSGPYGITE 111
Query: 547 FEN-HVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVV 590
N +++T + + + +D T+ + L Y +
Sbjct: 112 GLNGDIWFTQLNGDRIGKLT----ADGTIYEYDLPNKGSYPAFIT 152
Score = 40.8 bits (96), Expect = 0.001
Identities = 21/201 (10%), Positives = 55/201 (27%), Gaps = 35/201 (17%)
Query: 272 DDKIYNATLIGNSLSNID-------VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSN 324
+ I+ L G+ + + + S + + L+ +
Sbjct: 114 NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDN-ALWF---------TE 163
Query: 325 SSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERT 384
+ + I + G+ + N P + N L++ + N + R+ +
Sbjct: 164 NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKI--GRITTTGEI 220
Query: 385 VSFNLEVLGSDSR---VGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAG 441
+++ + G +W E +QI + +
Sbjct: 221 SEYDIPTPNARPHAITAG-----KNSEIWF------TEWGANQIGRITNDNTIQEYQLQT 269
Query: 442 DMESPRAIALDPRFGLLFWTD 462
+ P I G +++
Sbjct: 270 ENAEPHGITFGKD-GSVWFAL 289
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 55.9 bits (135), Expect = 2e-10
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
QD KC +F C +C+P C+G DCG + +DED+C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCG--NQADEDNC 42
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 93 PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C F C + + C+P+ L C+G C N DE C
Sbjct: 5 VKCSLGYFPCGN-ITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.7 bits (93), Expect = 9e-05
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHC 27
C+ C+G +DC + +DE ++C
Sbjct: 19 KCLPQLLHCNGVDDCGNQADE--DNC 42
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 55.4 bits (134), Expect = 3e-10
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
++C++ F C RCIP W CD DC D SDED C
Sbjct: 3 GPAKECEKDQFQCRNE-RCIPSVWRCDEDDDCL--DHSDEDDC 42
Score = 46.9 bits (112), Expect = 3e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDE 133
A CE +F C++ CIP CD + C + DE C +
Sbjct: 4 PAKECEKDQFQCRN--ERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 42.6 bits (101), Expect = 7e-06
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI + W+CD D+DC D SDE + C
Sbjct: 20 CIPSVWRCDEDDDCLDHSDE--DDC 42
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 58.1 bits (141), Expect = 4e-10
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 7/83 (8%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT-CSQDCEPSV 189
C C + + CS +AWGT C +
Sbjct: 44 TRSGNC---YLDIRPRGDNGDTACSNEIGVGVSKASCCCS---LGKAWGTPCEMCPAVNT 97
Query: 190 SNNSYKCTCHAGYELEPDMFTCK 212
S C G+ P +
Sbjct: 98 SEYKILCPGGEGFRPNPITVILE 120
Score = 57.8 bits (140), Expect = 7e-10
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
+C NTP ++C CP D L P + C + N C+
Sbjct: 13 ISGNCVNTPGSYICDCPPDFELNPTRVGC--VDTRSGNCYLDIRPRG--DNGDTACSNEI 68
Query: 201 GYELEPDMFTC 211
G + C
Sbjct: 69 GVGVSKASCCC 79
Score = 54.7 bits (132), Expect = 7e-09
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 8/86 (9%)
Query: 131 CDEKQCLRSDCH--HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPS 188
C + + C + +C P + + C+ C+
Sbjct: 79 CSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGL---CQGG 135
Query: 189 VSNN---SYKCTCHAGYELEPDMFTC 211
N S++C C GY L D C
Sbjct: 136 KCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 37.3 bits (87), Expect = 0.007
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C S C + G+Y C CP +L C
Sbjct: 6 CLDPTTCISGNC-VNTPGSYICDCPPDFELNPTRVGCV 42
Score = 33.1 bits (76), Expect = 0.16
Identities = 1/38 (2%), Positives = 3/38 (7%), Gaps = 1/38 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C + +
Sbjct: 84 AWGTPCEMCPAV-NTSEYKILCPGGEGFRPNPITVILE 120
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCS-HLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
C+ G C C I G+++C+CP L D + C
Sbjct: 125 CQELPGLCQGGKC-INTFGSFQCRCPTGYYLNEDTRVC 161
Score = 30.0 bits (68), Expect = 1.6
Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
N G NG C + + + C +
Sbjct: 47 GNCYLDIRP-RGDNGDTACSNEIGVGVSKASCCCSL 81
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 53.6 bits (129), Expect = 9e-10
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 27 CQDRKCDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDEDHC 69
+ C F C+E C P W CDG PDC D DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 46
Score = 49.0 bits (117), Expect = 5e-08
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 91 SAPACEPHEFDCQDVLR---TCIPKALVCDGEPACFNGEDEMFC 131
+C P +F C + C P+ +CDG P C +G DE C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 42.1 bits (99), Expect = 1e-05
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 2 TCIIAYWKCDGDEDCKDGSDEL 23
C W CDG DC DG DE
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDEW 44
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 53.5 bits (129), Expect = 1e-09
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
+C F C RCI W CDG DC D SDE +
Sbjct: 4 PQCQPGEFACA-NSRCIQERWKCDGDNDCL--DNSDEAPAL 41
Score = 46.5 bits (111), Expect = 3e-07
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI WKCDGD DC D SDE C
Sbjct: 18 CIQERWKCDGDNDCLDNSDEAPALC 42
Score = 45.0 bits (107), Expect = 1e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 91 SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
S P C+P EF C + CI + CDG+ C + DE
Sbjct: 2 SPPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 54.0 bits (130), Expect = 1e-09
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NG C C C+C L++D +C
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 45
Score = 42.5 bits (100), Expect = 2e-05
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 165 DLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
D + C + G C Q C + C CH GY L D +C +
Sbjct: 4 DQLICVNEN-----GGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTVE 49
Score = 35.9 bits (83), Expect = 0.004
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 140 DCHHDCYNTPEG-FMCVCPRDMYLQPDLITC--SYLHPCEAWGTCSQDCEPSV 189
C C + C C L D ++C + +PC + S
Sbjct: 14 GCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC-GKIPILEKRNASK 65
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand
binding, calcium binding, complement-like repeat, LRP
receptor, signaling protein; 1.85A {Homo sapiens} SCOP:
g.12.1.1
Length = 44
Score = 52.7 bits (127), Expect = 2e-09
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 30 RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTD 75
C + F CN + RCIP W CDG DCG D SDE H +CT+
Sbjct: 3 HSCSSTQFKCN-SGRCIPEHWTCDGDNDCG--DYSDETHA--NCTN 43
Score = 47.7 bits (114), Expect = 1e-07
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQDR 30
CI +W CDGD DC D SDE +C ++
Sbjct: 17 CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 44.2 bits (105), Expect = 2e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 92 APACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCD 132
+ +C +F C CIP+ CDG+ C + DE +
Sbjct: 2 SHSCSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHAN 40
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 52.0 bits (125), Expect = 3e-09
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 CDESHFTC-NETLRCIPLAWACDGQPDCGLNDTSDEDHCVN 71
C +C + +CIP++W CDG+ DC DE++C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENCGN 39
Score = 50.0 bits (120), Expect = 1e-08
Identities = 17/37 (45%), Positives = 19/37 (51%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C HE C CIP + CDGE C +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHCQD 29
CI W+CDG+ DC G DE E+C +
Sbjct: 15 CIPVSWRCDGENDCDSGEDE--ENCGN 39
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 54.7 bits (132), Expect = 3e-09
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 121 ACFNG----EDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
C G E + C ++ C DC C CP Y+ D C+ + CE
Sbjct: 27 VCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-QASCECPEG-YILDDGFICTDIDECE 84
Query: 177 AWGTCSQDCEPSVSNNSYKCTCHAGYELEP-DMFTC 211
G CS C +++C C L C
Sbjct: 85 NGGFCSGVCHNLPG--TFECICGPDSALAGQIGTDC 118
Score = 34.3 bits (79), Expect = 0.033
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
N C C N C+CP L D C
Sbjct: 44 MFCNQTACPADC--DPNTQASCECPEGYIL-DDGFICT 78
Score = 33.5 bits (77), Expect = 0.060
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
NC + C +Y C C +
Sbjct: 8 FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
Score = 32.7 bits (75), Expect = 0.14
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
C C+P + SY C C G+ P
Sbjct: 10 ANCEYQCQP-LDQTSYLCVCAEGFAPIPHEPHR 41
Score = 31.6 bits (72), Expect = 0.33
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDN-KTC 631
CE N G CS +C + GT++C C L C
Sbjct: 83 CE-NGGFCSGVC-HNLPGTFECICGPDSALAGQIGTDC 118
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 52.5 bits (126), Expect = 4e-09
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C + NG C C + C C +L + K+C+ A
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP 43
Score = 42.1 bits (99), Expect = 2e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 168 TCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
TC+ + G C Q C+ S +N C+C GY L + +C+
Sbjct: 1 TCNIKN-----GRCEQFCKNSA-DNKVVCSCTEGYRLAENQKSCEPAVP 43
Score = 33.2 bits (76), Expect = 0.025
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 141 CHHDCYNTPEG-FMCVCPRDMYLQPDLITC 169
C C N+ + +C C L + +C
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor,
cysteine-rich module, calcium; 1.70A {Homo sapiens}
SCOP: g.12.1.1
Length = 37
Score = 51.4 bits (124), Expect = 6e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHC 69
C F C CI +W CDG PDC D SDE++C
Sbjct: 2 CSAFEFHCLSG-ECIHSSWRCDGGPDCK--DKSDEENC 36
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 95 CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC 131
C EF C CI + CDG P C + DE C
Sbjct: 2 CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36
Score = 44.1 bits (105), Expect = 2e-06
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 3 CIIAYWKCDGDEDCKDGSDELAEHC 27
CI + W+CDG DCKD SDE E+C
Sbjct: 14 CIHSSWRCDGGPDCKDKSDE--ENC 36
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 51.3 bits (123), Expect = 7e-09
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 31 KCDESHFTCNETL----RCIPLAWACDGQPDCGLNDTSDEDHC 69
+C F C+E C P W CDG PDC D DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCD--DGRDEWGC 44
Score = 47.5 bits (113), Expect = 2e-07
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 93 PACEPHEFDCQDVLRT---CIPKALVCDGEPACFNGEDEMFCDE 133
C P +F C + C P+ +CDG P C +G DE C
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 41.7 bits (98), Expect = 2e-05
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 3 CIIAYWKCDGDEDCKDGSDEL 23
C W CDG DC DG DE
Sbjct: 22 CYPQDWLCDGHPDCDDGRDEW 42
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 51.2 bits (123), Expect = 8e-09
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C NG C C C+C L++D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 39
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSK 216
G C Q C + C CH GY L D +C +
Sbjct: 7 GGCEQYCSDH-TGTKRSCRCHEGYSLLADGVSCTPTVE 43
Score = 32.4 bits (74), Expect = 0.037
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 141 CHHDCYNTPEG-FMCVCPRDMYLQPDLITC 169
C C + C C L D ++C
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 49.3 bits (118), Expect = 4e-08
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635
C ++NG C C +C C H L D+K+C +
Sbjct: 1 CSLDNGGCDQFCR-EERSEVRCSCAHGYVLGDDSKSCVSTE 40
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C + +C+C GY L D +C S
Sbjct: 6 GGCDQFCREER--SEVRCSCAHGYVLGDDSKSCVS 38
Score = 37.3 bits (87), Expect = 7e-04
Identities = 7/29 (24%), Positives = 8/29 (27%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
C C C C L D +C
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSC 36
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 49.2 bits (118), Expect = 1e-07
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQP-DLITCSYLHPCEAW--GTCSQDCEPSVSNN--SYK 195
C NTP F C C + C + C+ C N SY+
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH----NTEGSYR 69
Query: 196 CTCHAGYELEPDMFTC 211
C C G++L P++ C
Sbjct: 70 CECPPGHQLSPNISAC 85
Score = 34.6 bits (80), Expect = 0.017
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNC-SHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
C+ + C +C G+Y+C+CP +L + C
Sbjct: 49 CQRDPLLCRGGVC-HNTEGSYRCECPPGHQLSPNISAC 85
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 48.3 bits (116), Expect = 2e-07
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 132 DEKQCLRSD--CHHDCYNTPEGFMCVCPRDMYLQPDLIT----CSYLHPCEAWGTCSQDC 185
DE C D H C NT + C CP L + CS +PC + C
Sbjct: 6 DE--CKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPC-----GNGTC 58
Query: 186 EPSVSNN--SYKCTCHAGYELEPDMFTCK 212
+ N ++CTC G+E M TC+
Sbjct: 59 K----NVIGGFECTCEEGFEPG-PMMTCE 82
Score = 34.1 bits (79), Expect = 0.018
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C + N + C + G ++C C + TC+
Sbjct: 47 CSVGNPCGNGTC-KNVIGGFECTCEEGFEP-GPMMTCE 82
Score = 30.2 bits (69), Expect = 0.42
Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
DE C + C N GF C C P + TC
Sbjct: 45 DE--CSVGNP---CGNGTCKNVIGGFECTCEEGFEPGPMM-TC 81
Score = 29.9 bits (68), Expect = 0.62
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQ 632
C+ + C I +G+Y+C+CP L C
Sbjct: 8 CKEPDVCKHGQC-INTDGSYRCECPFGYIL--AGNECV 42
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 46.6 bits (111), Expect = 4e-07
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVAD 635
C ++NG+C C + C C L + K C
Sbjct: 4 CSLDNGDCDQFCH-EEQNSVVCSCARGYTLADNGKACIPTG 43
Score = 41.2 bits (97), Expect = 3e-05
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
G C Q C NS C+C GY L + C
Sbjct: 9 GDCDQFCHEEQ--NSVVCSCARGYTLADNGKACIP 41
Score = 37.4 bits (87), Expect = 8e-04
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPC 175
C C+ +C C R L + C P
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 48.4 bits (116), Expect = 6e-07
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 24/114 (21%)
Query: 116 CDGEPACFNGEDEMFC-------------DEKQCLRSDCHHD--CYNTPEGFMCVCPRD- 159
C E + E+F D QC S C + C + + C C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 160 --MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ L + C + NS C+C GY L + C
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHE------EQNSVVCSCARGYTLADNGKAC 119
Score = 28.0 bits (63), Expect = 6.7
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCP 619
C ++NG+C C N C C
Sbjct: 84 CSLDNGDCDQFCHEEQNS-VVCSCA 107
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 48.5 bits (116), Expect = 7e-07
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 99 EFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPR 158
+ C + V DG C + + C T +C +
Sbjct: 38 KTICIET-IKGTCWQTVIDGR--CEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGK 94
Query: 159 DMYLQPDLIT-----CSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
C G C + S+KC C +G L+ C
Sbjct: 95 GYSRIKGTQCEDIDECEVFPGVCKNGLCVN------TRGSFKCQCPSGMTLDATGRIC 146
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 26/103 (25%)
Query: 132 DEKQCLRS-DCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAW-GTCSQDCEPSV 189
DE C S + C N+P F+C C + L P C W CE ++
Sbjct: 5 DE--CESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62
Query: 190 ---------------------SNNSYKCTCHAGYELEPDMFTC 211
+ C GY C
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQC 104
Score = 40.0 bits (94), Expect = 7e-04
Identities = 24/138 (17%), Positives = 36/138 (26%), Gaps = 37/138 (26%)
Query: 38 TCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEP 97
C ET++ DG+ + +N + + C + C
Sbjct: 40 ICIETIKGTCWQTVIDGRCEININGATLKSQCCSSL-------GAAWGSP-------CTL 85
Query: 98 HEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFC---DEKQCLRSD---CHHDCYNTPEG 151
+ D C ++ C DE C + C NT
Sbjct: 86 CQVDP-----IC----------GKGYSRIKGTQCEDIDE--CEVFPGVCKNGLCVNTRGS 128
Query: 152 FMCVCPRDMYLQPDLITC 169
F C CP M L C
Sbjct: 129 FKCQCPSGMTLDATGRIC 146
Score = 33.5 bits (77), Expect = 0.12
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 595 CEMNNGNCSH-LCLIGMNGTYKCQCPHVMKLMSDNKTC 631
CE+ G C + LC + G++KCQCP M L + + C
Sbjct: 110 CEVFPGVCKNGLC-VNTRGSFKCQCPSGMTLDATGRIC 146
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 50.7 bits (121), Expect = 8e-07
Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 27/224 (12%)
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNC---RP 405
+ +L + ++ + + + S+ DG+++ + G +
Sbjct: 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATV---------EGKVSGLAFTS 81
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+L W ++ + + K G L D I DS
Sbjct: 82 NGDLVAT---GWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTA--DS 135
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLT-----SRGAWPNGLTLDYQLTRIYWIDAKSDSIHT 520
I + S+ + +L S NGL +Y + + +
Sbjct: 136 YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLR 193
Query: 521 VTYDGKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563
+ D D T+ A E ++Y NSV+R
Sbjct: 194 IPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVR 237
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 50.3 bits (120), Expect = 2e-06
Identities = 48/333 (14%), Positives = 100/333 (30%), Gaps = 32/333 (9%)
Query: 259 TPTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLYMFWAFW 318
+ V++ D + +T+IG + + + L + V + +
Sbjct: 44 DKSKVKVYFVD--EAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKVI-VDGKEVTTDGTF 100
Query: 319 SLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSSLVIDYNQDILYWCDSHLNTVESVRV 378
+ + A G + L + ++ + + + V + V
Sbjct: 101 KYEQAQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISV 159
Query: 379 DGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTL 438
D ++ T G V R W G + +V + L
Sbjct: 160 DDNKVTTVHPGFK-GGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGW-----APTRIGQL 213
Query: 439 IAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAW--P 496
+ A+ALD L++ D + R + ++I +++L S G P
Sbjct: 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV---TLIKQLELSGSLGTNPGP 270
Query: 497 NGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDS-----------LTHPFAIA 545
+ + Y D S++ +T DG+ S P +
Sbjct: 271 YLIYYFVD-SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMT 329
Query: 546 LFEN-HVYWTDWRTNSVIRANKWNGSD--VTLI 575
+ E+ + Y D +R K + D V+ +
Sbjct: 330 VDEDGNFYIVDGFKGYCLR--KLDILDGYVSTV 360
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 46.2 bits (110), Expect = 2e-06
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 132 DEKQCLRSDC--HHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
+ S C H C + F C C + S+L+ G C+ C V
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 72
Query: 190 SNNSYKCTCHAGYELEPDMFTC 211
+C+C GY+L D+ C
Sbjct: 73 --GWRRCSCAPGYKLGDDLLQC 92
Score = 36.2 bits (84), Expect = 0.008
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C ++NG C+H C + G +C C KL D C A
Sbjct: 57 CSLDNGGCTHYC-LEEVGWRRCSCAPGYKLGDDLLQCHPAVK 97
Score = 32.0 bits (73), Expect = 0.21
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 127 DEMFCDEKQCLRS--DCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
+ C C H C C C L DL+ C
Sbjct: 48 CQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 46.4 bits (110), Expect = 3e-06
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 27/102 (26%)
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCP--------RDMYLQPDLITC-------SY 171
+E C + DC+NT + CVC + TC S
Sbjct: 45 NE--CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 172 LHPCEAWGTCSQDCEPSVSNN--SYKCTCHAGYELEPDMFTC 211
H C++ C N SY C C G++ +
Sbjct: 103 QHQCDSSTVCF--------NTVGSYSCRCRPGWKPRHGIPNN 136
Score = 37.9 bits (88), Expect = 0.003
Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 132 DEKQCLRS-DCHHDCYNTPEGFMCVCP-----RDMYLQPDLITCSYLHPCEAWGTCSQDC 185
D + C R C N C C + + TC ++ C S
Sbjct: 1 DSRGCARWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGK 57
Query: 186 EPSVSNN--SYKCTCHAGYELEPDMFTCKS 213
N SY C C GYE T K+
Sbjct: 58 FSDCWNTEGSYDCVCSPGYEPVSGAKTFKN 87
Score = 30.6 bits (69), Expect = 1.1
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 140 DCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
D C+NT + C C + + CE
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 47.1 bits (112), Expect = 5e-06
Identities = 22/114 (19%), Positives = 32/114 (28%), Gaps = 24/114 (21%)
Query: 116 CDGEPACFNGEDEMFC-------------DEKQCLRSDCHHD--CYNTPEGFMCVCPRD- 159
C E + E+F D QC S C + C + + C C
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF 71
Query: 160 --MYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ L + C + NS C+C GY L + C
Sbjct: 72 EGKNCELFTRKLCSLDNGDCDQFCHE------EQNSVVCSCARGYTLADNGKAC 119
Score = 39.0 bits (91), Expect = 0.002
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY--LHPCEAWGTCSQDCEPS 188
C C C+ +C C R L + C +PC +
Sbjct: 84 CSLDNGD---CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRK---- 136
Query: 189 VSNNSYKCTCHAGY 202
+ + T +G
Sbjct: 137 --RSVAQATSSSGE 148
Score = 28.2 bits (63), Expect = 8.7
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C ++NG+C C N C C L + K C
Sbjct: 84 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPTGP 124
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 47.0 bits (110), Expect = 6e-06
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 2/88 (2%)
Query: 126 EDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP-DLITCSYLHPCEAWG-TCSQ 183
++ +C + + + C C P D C+ +
Sbjct: 90 VLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTD 149
Query: 184 DCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ Y C C G+ + + C
Sbjct: 150 NEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/169 (10%), Positives = 34/169 (20%), Gaps = 17/169 (10%)
Query: 8 WKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67
+ C++ +E C E + C L + +
Sbjct: 33 LVHLSENTCEEX-NECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVL 91
Query: 68 HCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGED 127
+ + C I + C +C + +
Sbjct: 92 DVC-QYXNCGESGECIVEYLSEIQSAGC------------SCAIGXVPNPEDEXXCTXTG 138
Query: 128 EMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
E C + C N + C C + C H
Sbjct: 139 ETACQLXCN---TDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184
Score = 37.3 bits (85), Expect = 0.008
Identities = 18/110 (16%), Positives = 25/110 (22%), Gaps = 7/110 (6%)
Query: 100 FDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRD 159
F C C+ C C E + + C C
Sbjct: 25 FXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQC---IENPDPAQVNMYXCGCIEG 81
Query: 160 MYLQPDLITCSYLH--PCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPD 207
L D C G C + + S C+C G P+
Sbjct: 82 YTLXEDTCVLDVCQYXNCGESGECIVEYLSEI--QSAGCSCAIGXVPNPE 129
Score = 37.3 bits (85), Expect = 0.009
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 13/102 (12%)
Query: 131 CDEKQCLRSDCHHD--CYNTPEGFMCVCPRDMYLQPDLITC---------SYLHPCEAWG 179
+ + F C+C + TC + C +G
Sbjct: 2 AEASAVTVDTICXNGQLVQMSNHFXCMCNEG-LVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 180 TCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSP 221
C ++ +P+ N Y C C GY L D +
Sbjct: 61 QCIENPDPA-QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGE 101
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 45.4 bits (108), Expect = 9e-06
Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 107 RTCIPKALVCDGEPACF------NGEDEMFCDEK--QCLRSDCHHD--CYNTPEGFMCVC 156
R C + C E A + QC S C + C + + ++C C
Sbjct: 15 RECKEE--QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFC 72
Query: 157 PRDMYL---QPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTC 211
+ + E G C Q C C CH GY L D +C
Sbjct: 73 LPAFEGRNCETHKDDQL-ICVNEN-GGCEQYCSDHT-GTKRSCRCHEGYSLLADGVSC 127
Score = 32.7 bits (75), Expect = 0.21
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 593 SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
E NG C C C+C L++D +C
Sbjct: 91 CVNE--NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 174 PCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSK 214
+ C C V Y C+C GYEL+ D +C+++
Sbjct: 15 EEDPQPQCQHLCHNYVG--GYFCSCRPGYELQEDRHSCQAE 53
Score = 37.4 bits (87), Expect = 7e-04
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 593 SPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
S E C HLC G Y C C +L D +CQ
Sbjct: 13 SGEEDPQPQCQHLC-HNYVGGYFCSCRPGYELQEDRHSCQA 52
Score = 37.4 bits (87), Expect = 7e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C H C+N G+ C C LQ D +C
Sbjct: 22 CQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 43.1 bits (100), Expect = 3e-04
Identities = 29/165 (17%), Positives = 41/165 (24%), Gaps = 14/165 (8%)
Query: 8 WKCDGDE-DCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDE 66
C GD D S C + F C ET RC+ C+G DC SDE
Sbjct: 42 TICSGDIWDQASCSSS--TTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDG--SDE 97
Query: 67 DHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGE 126
D C + + S I ++ T V D E
Sbjct: 98 DDCEDVRA-----IDEDCSQYEPIPGSQKAALGYNI----LTQEDAQSVYDASYYGGQCE 148
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171
+ ++ Y + P +
Sbjct: 149 TVYNGEWRELRYDSTCERLYYGDDEKYFRKPYNFLKYHFEALADT 193
Score = 36.9 bits (84), Expect = 0.025
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 22/140 (15%)
Query: 72 DC--TDWSDETNCTHSGN-----RTISAPA------CEPHEFDCQDVLRTCIPKALVCDG 118
C ++WS+ T+C + R++ P C +D + C
Sbjct: 8 TCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASC-----SSSTTCVR 62
Query: 119 EPACFNGEDEMFCDEKQCLRSDCHH--DCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCE 176
+ C C+ DC + + C R +
Sbjct: 63 QAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKA 122
Query: 177 AWGTC--SQDCEPSVSNNSY 194
A G +Q+ SV + SY
Sbjct: 123 ALGYNILTQEDAQSVYDASY 142
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 135 QCLRSDCHHD--CYNTPEGFMCVCPRD---MYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
QC + C + C + + C C + D TC+ + C
Sbjct: 50 QCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD-ATCNIKNGR-CKQFCKTG----- 102
Query: 190 SNNSYKCTCHAGYELEPDMFTC 211
+++ C+C GY L PD +C
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSC 124
Score = 30.8 bits (70), Expect = 0.75
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 595 CEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
C + NG C C G + C C +L D K+C
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 40.7 bits (96), Expect = 0.001
Identities = 42/236 (17%), Positives = 89/236 (37%), Gaps = 31/236 (13%)
Query: 294 TGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQWPSS 353
GL +GLAVD G +Y+ ++ ++ + A N++ L + +P
Sbjct: 64 NGLYQPQGLAVDGAG-TVYV---------TDFNNRVVTLAAG-SNNQTVLPFDGLNYPEG 112
Query: 354 LVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDNLWIGK 413
L +D + Y D N V + +TV L V + N+++
Sbjct: 113 LAVDTQGAV-YVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVD---NSGNVYV-- 165
Query: 414 NLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERC 473
+++ +++ + + L D+ +P IA+D G ++ T+ ++ ++ +
Sbjct: 166 ----TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTN--QVVKL 218
Query: 474 SMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
+V+ L P + +D +Y D +D + +T HH
Sbjct: 219 LAGSTTSTVLPFTGL-----NTPLAVAVDSD-RTVYVADRGNDRVVKLTSLEHHHH 268
Score = 36.1 bits (84), Expect = 0.039
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 17/171 (9%)
Query: 420 SNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEH 479
++ L + P+ +A+D G ++ TD++++ + + S
Sbjct: 43 GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGA-GTVYVTDFNNR--VVTLAAGSNNQ 99
Query: 480 RSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHDSLT 539
+ +P GL +D Q +Y D ++ + + K V+ L
Sbjct: 100 TVLP------FDGLNYPEGLAVDTQ-GAVYVADRGNNRVVKLAAGSKTQTVLPFT--GLN 150
Query: 540 HPFAIALF-ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGV 589
P +A+ +VY TD N+ + K + T G+
Sbjct: 151 DPDGVAVDNSGNVYVTDTD-NNRVV--KLEAESNNQVVLPFTD-ITAPWGI 197
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 40.5 bits (94), Expect = 0.002
Identities = 37/288 (12%), Positives = 78/288 (27%), Gaps = 51/288 (17%)
Query: 215 SKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDK 274
+ + + +H R +D V + S L + + T A+ + T+ ++
Sbjct: 145 DPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICW--THEADSMIITNDQNNN 202
Query: 275 IYNATLIGNSLSN-IDVVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKA 333
I S + T G I LY ++ + G + +
Sbjct: 203 DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF---------NSWNAGQVFRY 253
Query: 334 GMHGENRSPLVT-KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVL 392
+ +PL T ++ W + + + Y + + + D + ++ V
Sbjct: 254 DFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVC 313
Query: 393 GSDSRVGIPN--------CRPEDNLWI----------GKNLYWVESNLDQIEVAKLSGQF 434
G + P ++ + Y+ + I + G+
Sbjct: 314 GQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRV 373
Query: 435 RRTLIAGDME------------------SPRAIALDPRFGLLFWTDWD 464
T AG P I D F D +
Sbjct: 374 --TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 38.0 bits (89), Expect = 0.003
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 132 DEKQCLRSDCHHD--CYNTPEGFMCVCP---RDMYLQPDLITCSYLHPCEAWGTCSQDCE 186
DE + C H C NT F C C + D+ C +PC+ TC D
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECV-SNPCQNDATC-LDQI 63
Query: 187 PSVSNNSYKCTCHAGYE 203
++C C GYE
Sbjct: 64 -----GEFQCICMPGYE 75
Score = 35.3 bits (82), Expect = 0.021
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 136 CLRSDCHHD--CYNTPEGFMCVCPRD---MYLQPDLITCSYLHPCEAWGTCSQDCEPSVS 190
C+ + C +D C + F C+C ++ + + C+ PC G C D
Sbjct: 48 CVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECA-SSPCLHNGRC-LD-----K 100
Query: 191 NNSYKCTCHAGYE 203
N ++C C G+
Sbjct: 101 INEFQCECPTGFT 113
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 38.1 bits (89), Expect = 0.003
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 115 VCDGEPACFNGEDEMFCDEKQCLRSDCHHD--CYNTPEGFMCVCPRD---MYLQPDLITC 169
G+ C G ++CD+ C+ C + C+C + DL C
Sbjct: 80 KLPGDCRCQYGWQGLYCDK--CIPHPGCVHGICNE---PWQCLCETNWGGQLCDKDLNYC 134
Query: 170 SYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203
PC GTCS + + Y+C+C GY
Sbjct: 135 GTHQPCLNGGTCS-----NTGPDKYQCSCPEGYS 163
Score = 30.4 bits (69), Expect = 1.6
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 22/92 (23%)
Query: 133 EKQCLRSDCHHDCYNTPEGFMCVCP-----RDMYLQPDLITCSYLHP-CEAWGTCS---- 182
K C D Y + C + CS H C+ G C
Sbjct: 31 NKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYG 90
Query: 183 ---QDCEPSVSN---------NSYKCTCHAGY 202
C+ + + ++C C +
Sbjct: 91 WQGLYCDKCIPHPGCVHGICNEPWQCLCETNW 122
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 38.1 bits (88), Expect = 0.008
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 215 SKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKNTIALDFYYTPTANMVFWTDVIDDK 274
+ L +D TF V + T + ++W +
Sbjct: 189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---D 245
Query: 275 IYNATLIGNSLSNIDVVVQTGLSTAEGLAVDWIGKNLY 312
I+ + + + + + GL V+ +Y
Sbjct: 246 IWRMPVEADRVPVRPFLEFRD-TKYYGLTVNPNNGEVY 282
Score = 34.2 bits (78), Expect = 0.14
Identities = 29/221 (13%), Positives = 66/221 (29%), Gaps = 27/221 (12%)
Query: 346 KNIQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP 405
P + + + Y + ++ ++ +E D G
Sbjct: 81 TGFTSPRYIHFLSD-EKAYVTQIWDYRI--FIINPKTYEITGYIECPDMDMESGSTEQMV 137
Query: 406 EDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDS 465
+ ++ N + ++ + +I+ + + L G P ++ +D ++
Sbjct: 138 QYGKYVYVNCWSYQNRILKIDTE--TDKVVDELTIGI--QPTSLVMDKY-NKMWTITDGG 192
Query: 466 KAPRIERCSMSGEHRSVIVRVDLLT---------SRGAWPNGLTLDYQLTRIYWIDAKSD 516
S G + R+D T G WP+ + L+ +YWI+
Sbjct: 193 YEG-----SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--- 244
Query: 517 SIHTVTYDGKDHHVVLSNHDSLTHPFAIAL--FENHVYWTD 555
I + + V T + + + VY D
Sbjct: 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 37.8 bits (87), Expect = 0.016
Identities = 37/222 (16%), Positives = 55/222 (24%), Gaps = 39/222 (17%)
Query: 7 YWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTS-D 65
CDG + + E F + Q +C D S D
Sbjct: 375 RGDCDGVQ-INVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRD 433
Query: 66 EDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPK--ALVCDGEPACF 123
C C C+ Q++ +C +++C G C
Sbjct: 434 RSLCHGKGFLECGICRCDT--GYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV 491
Query: 124 NGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLH--PCEAWGTC 181
G+ C C SD G C C C + C G
Sbjct: 492 CGQ----C---LCHTSDVPGKLI---YGQYCECDTI--------NCERYNGQVCGGPGRG 533
Query: 182 SQDCEPSVSNNSYKCTCHAGY-----ELEPDMFTCKSKSKND 218
C KC CH G+ + E C + + +
Sbjct: 534 LCFC--------GKCRCHPGFEGSACQCERTTEGCLNPRRVE 567
Score = 33.1 bits (75), Expect = 0.49
Identities = 25/147 (17%), Positives = 41/147 (27%), Gaps = 16/147 (10%)
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
N + + DC N + ++A C + L + P
Sbjct: 366 NGVTHRNQPRGDCDGVQ--INVPITFQVKVTATECIQEQSFVIRAL--GFTDIVTVQVLP 421
Query: 121 ACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
C E C ++ RS CH E +C C + E G+
Sbjct: 422 QC-----ECRCRDQSRDRSLCHGKG--FLECGICRCDTGYIGKNCECQTQGRSSQELEGS 474
Query: 181 CSQDCEPSVSNN-----SYKCTCHAGY 202
C +D + + +C CH
Sbjct: 475 CRKDNNSIICSGLGDCVCGQCLCHTSD 501
Score = 31.2 bits (70), Expect = 1.9
Identities = 14/111 (12%), Positives = 26/111 (23%), Gaps = 10/111 (9%)
Query: 102 CQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMY 161
+ +P L + C NG C + + C ++
Sbjct: 344 RVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQS 403
Query: 162 LQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSY----------KCTCHAGY 202
+ + + + C C + S C C GY
Sbjct: 404 FVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY 454
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 37.3 bits (86), Expect = 0.022
Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 5/151 (3%)
Query: 11 DGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCV 70
+ +D + AE + + C +A DG +D +
Sbjct: 103 NPCKDKTHNCHKHAECIYLGHFSDPMYKCE-----CQTGYAGDGLICGEDSDLDGWPNLN 157
Query: 71 NDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMF 130
C + + ++ + + D V D + C +
Sbjct: 158 LVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQ 217
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMY 161
D + D +C +
Sbjct: 218 ADYDKDEVGDRCDNCPYVHNPAQIDTDNNGE 248
Score = 30.4 bits (68), Expect = 2.7
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 17/85 (20%)
Query: 136 CLRSDCHHDCYNTPEGFMC------------VCPRDMYLQPDLITCSYLHPCE-AWGTCS 182
C + C NT GF C V + + C +PC+ C
Sbjct: 54 CFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCH 113
Query: 183 QDCE----PSVSNNSYKCTCHAGYE 203
+ E S+ YKC C GY
Sbjct: 114 KHAECIYLGHFSDPMYKCECQTGYA 138
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 34.4 bits (79), Expect = 0.023
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 122 CFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQP---DLITCSYLHPCEAW 178
C + + +M + Q + C C Q + +CS C
Sbjct: 6 CRDEKTQMIYQQHQSWLRPVLR----SNRVEYCWCNSG-RAQCHSVPVKSCSE-PRCFNG 59
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYE 203
GTC Q + + + C C G+
Sbjct: 60 GTCQQA----LYFSDFVCQCPEGFA 80
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 37.1 bits (86), Expect = 0.023
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 33/139 (23%)
Query: 444 ESPRAIALDPRFGLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR-------GAWP 496
+ +A + L+ S+ + V+ R+D +T P
Sbjct: 41 KGAYEMAYSQQENALWLATSQSRKL---------DKGGVVYRLDPVTLEVTQAIHNDLKP 91
Query: 497 NGLTLDYQLTRIY----------WIDAKSDS-IHTVTYDGKDHHVVLSNHDSLTHPFAIA 545
G T++ ++ IDAK+ + D + + P +
Sbjct: 92 FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL----QPRELV 147
Query: 546 LFE--NHVYWTDWRTNSVI 562
+ N VY + SVI
Sbjct: 148 ADDATNTVYISGIGKESVI 166
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 35.9 bits (83), Expect = 0.040
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 9/97 (9%)
Query: 444 ESPRAIALDPRFGLLFWTDW----DSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGL 499
E P D A I R + ++VI + G P G
Sbjct: 21 EGPVF---DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CKPEVNGYGGIPAGC 76
Query: 500 TLDYQLTRIYWIDAKSDSIHTVTYDGKDHHVVLSNHD 536
D ++ + V DG + + +
Sbjct: 77 QCDRD-ANQLFVADMRLGLLVVQTDGTFEEIAKKDSE 112
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 36.4 bits (83), Expect = 0.043
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 12 GDEDCKDGSDELAEHCQDRKC----DESHFTCNETLRCIPLAWACDGQPDCGLNDTSDED 67
E C E+ + +R C F C +T RC+ C+G DCG D SDE
Sbjct: 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCG--DQSDEA 99
Query: 68 HCVNDCTDWSDETNCTHSGNRTISAPACEPHEF 100
+C E + S + F
Sbjct: 100 NCRRIYKKCQHEMDQYWGIGSLASGINLFTNSF 132
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 34.8 bits (80), Expect = 0.045
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 136 CLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITC 169
+ C H C N G+ C CP + +L D+ C
Sbjct: 123 FVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 34.0 bits (78), Expect = 0.072
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCK 212
CS C + Y C+C Y L DM C
Sbjct: 126 VPCSHFCNNFI--GGYFCSCPPEYFLHDDMKNCG 157
Score = 29.8 bits (67), Expect = 2.1
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 583 FIYVNGVVKKSPC-EMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQV 633
F + C + + CSH C G Y C CP L D K C V
Sbjct: 108 FAAYYVATDINECTDFVDVPCSHFC-NNFIGGYFCSCPPEYFLHDDMKNCGV 158
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 35.6 bits (82), Expect = 0.059
Identities = 40/231 (17%), Positives = 68/231 (29%), Gaps = 24/231 (10%)
Query: 349 QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRPEDN 408
P L ID + + + D L+ V + E + + S C+P D
Sbjct: 91 YLPHGLSIDTDGNY-WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-HFCQPTDV 148
Query: 409 LWIGKNLYWV----ESNLDQIEVAKLSGQFRRT---------LIAGDMESPRAIALDPRF 455
N +I SG+F G P ++AL P
Sbjct: 149 AVEPSTGAVFVSDGYCN-SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL 207
Query: 456 GLLFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRG---AWPNGLTLDYQLTRIYWID 512
L D ++ RI+ + ++ ++ G + Y+ D
Sbjct: 208 DQLCVADRENG--RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN-GKPYFGD 264
Query: 513 AKSDSIHTVTY-DGKDHHVVLSNHDSLTHPFAIALFEN-HVYWTDWRTNSV 561
+ + + G+ V P I E+ VY D TN+V
Sbjct: 265 QEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTV 315
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 35.7 bits (81), Expect = 0.069
Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 24/177 (13%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSG 86
C + C + + L I A C G+ + C CT E++C
Sbjct: 170 CPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTG-PRESDCL--- 225
Query: 87 NRTISAPACEPHEFD--CQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHD 144
C + C+D TC P L + + C+
Sbjct: 226 -------VCRKFRDEATCKD---TCPPLMLYNPTTYQMDVNPEGKYSFGATCV--KKCPR 273
Query: 145 CYNTPEGFMCV--CPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCH 199
Y + CV C D Y + + C+ + + +K +
Sbjct: 274 NYVVTDHGSCVRACGADSYEMEE----DGVRKCKKCEGPCRKVCNGIGIGEFKDSLS 326
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 35.2 bits (81), Expect = 0.077
Identities = 13/130 (10%), Positives = 24/130 (18%), Gaps = 12/130 (9%)
Query: 9 KCDGDEDCKDGSDELAEHCQD-RKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSD-- 65
C + + + + E+ C W
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENF--CRNPDGDEEGVWCYVAGKPGDFGYCDLNY 92
Query: 66 -EDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFN 124
E+ + D DE + T + T C P
Sbjct: 93 CEEAVEEETGDGLDEDSDRAIEGAT-----ATSEYQTFFNP-ATFGSGEADCGLRPLFEK 146
Query: 125 GEDEMFCDEK 134
E + +
Sbjct: 147 KSLEDKTERE 156
Score = 34.1 bits (78), Expect = 0.22
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 3 CIIAYWKCDGDEDCKDGSDELA-EHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLN 61
C + Y + +E+ DG DE + + + T C +P
Sbjct: 88 CDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLF--E 145
Query: 62 DTSDEDHCVNDC 73
S ED +
Sbjct: 146 KKSLEDKTEREL 157
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.097
Identities = 23/204 (11%), Positives = 44/204 (21%), Gaps = 7/204 (3%)
Query: 16 CKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTD 75
C + + C C + C C+ +C+
Sbjct: 159 CPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQ 218
Query: 76 WSDETNCTHSGNRTISA---PACEPHEFDCQDVLRTCIPKALVCDG--EPACFNGEDEMF 130
D T C N + C P + QD + + G +
Sbjct: 219 PDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYV 278
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVS 190
+C+ C +C ++ + + +V
Sbjct: 279 IHNNKCIPE-CPSGYTMNSSNLLCTPCLGP-CPKVCHLLEGEKTIDSVTSAQELRGCTVI 336
Query: 191 NNSYKCTCHAGYELEPDMFTCKSK 214
N S G L ++
Sbjct: 337 NGSLIINIRGGNNLAAELEANLGL 360
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 34.8 bits (80), Expect = 0.10
Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 31/168 (18%)
Query: 62 DTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPA 121
+ D+ + + H + C + D + V + E
Sbjct: 76 RSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLG-KQDGVAAFEVDVI---VMNSEGN 131
Query: 122 CFNGEDEMFCDEKQCLRSDCHHDCYNT---PEGFMCVCPRDMYLQPDLITCSYLHPCEAW 178
+ K C +++C C N E +C CP D + P C
Sbjct: 132 TILKTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECP-DGFHGPHCEKALCTPRCMNG 190
Query: 179 GTCSQ-------------DCEPSVSN----------NSYKCTCHAGYE 203
G C +C+ + + KC C G E
Sbjct: 191 GLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLE 238
>1z3q_A Thaumatin-like protein; beta sandwich, antifungal protein; 1.70A
{Musa acuminata}
Length = 200
Score = 34.2 bits (77), Expect = 0.11
Identities = 29/157 (18%), Positives = 43/157 (27%), Gaps = 22/157 (14%)
Query: 61 NDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEP 120
D S C D +CT GN + ++F+ D + DG
Sbjct: 52 FDGSGRGRCQ--TGDCGGVLSCTAYGNPPNTLAEFALNQFNNLD-----FFDISLVDG-- 102
Query: 121 ACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
FN + C C D CP + + + +
Sbjct: 103 --FNVPMDFSPTSGGCRGIRCAADIN-------GQCPGALKAPGGCNNPCTVFKTDQYCC 153
Query: 181 CSQDCEPSVSNNSYKCTCHAGYELEPD----MFTCKS 213
S C P+ + +K C Y D FTC
Sbjct: 154 NSGACSPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPG 190
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 33.8 bits (77), Expect = 0.11
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 161 YLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKS 215
Y D+ C TC C + + C+C AGY L + TC +S
Sbjct: 119 YAAEDIDECQV--APGEAPTCDHHCHNHL--GGFYCSCRAGYVLHRNKRTCSEQS 169
Score = 31.8 bits (72), Expect = 0.53
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
C C H C+N GF C C L + TCS
Sbjct: 127 CQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS 166
>2gh0_A GFR-alpha-3, GDNF family receptor alpha-3; cystine-knot, helix
bundle, hormone-growth factor complex; HET: NAG BMA MAN;
1.92A {Homo sapiens}
Length = 213
Score = 34.4 bits (78), Expect = 0.11
Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 25/114 (21%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLR----CIPLAWACDGQPD 57
C+ C ++ C E C C C L A
Sbjct: 11 LCLKFAMLCTLNDKCDRLRKAYGEACSGPHCQRHV--CLRQLLTFFEKAAEPHA------ 62
Query: 58 CGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPAC--EPHEFDCQDVLRTC 109
+ C ++ C TI+ P C P +C ++ R C
Sbjct: 63 ----------QGLLLCPCAPNDRGCGERRRNTIA-PNCALPPVAPNCLELRRLC 105
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 34.9 bits (80), Expect = 0.11
Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 52/307 (16%)
Query: 234 VDLRTFNVIALISSLKNTIALDFY---YTPTANMVFWTDVIDDKIYNATLI-GNSLSNID 289
+D+ + + L K L F P N ++ + + + + + +L+
Sbjct: 149 LDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV---HVFDLKTLAYKA 205
Query: 290 VVVQTGLSTAEGLAVDWIGKNLYMFWAFWSLSPSNSSDGGIEKAGMHGENRSPLVTKNIQ 349
V TG ++ L D I +Y SN I + + + +
Sbjct: 206 TVDLTG-KWSKILLYDPIRDLVYC---------SNWISEDISV--IDRKTKL--EIRKTD 251
Query: 350 ---WPSSLVIDYNQDILYWCDSHLNTVESVR-----VDGSERTVSFNLEVLGSDSRVGIP 401
P L++ + LY + ES + + + + R +
Sbjct: 252 KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP-PGNKRHIVS 310
Query: 402 NCRPEDNLWIGKNLY---WVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLL 458
+Y S ++ ++ + ++++ D P IAL P L
Sbjct: 311 G--NT-----ENKIYVSDMCCSKIEVYDLK--EKKVQKSIPVFD--KPNTIALSPDGKYL 359
Query: 459 FWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSR-------GAWPNGLTLDYQLTRIYWI 511
+ + P V V +D T G P GL + +
Sbjct: 360 YVSCRGPNHPTEGYLKKGLVLGKVYV-IDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS 418
Query: 512 DAKSDSI 518
D I
Sbjct: 419 DFLDHQI 425
Score = 30.3 bits (68), Expect = 2.6
Identities = 40/351 (11%), Positives = 102/351 (29%), Gaps = 41/351 (11%)
Query: 227 NRHELRGVDLRTFNVIALISS--LKNTIALDFYYTPTANMVFWTDVIDDKIYNATLIG-N 283
+ H F++++ + T + F P V ++ + L
Sbjct: 2 HHHHHHLESSGDFSLLSSPINREKNGTEIVKFSIHPYKGTVIRLG--EEILPFKVLEMDK 59
Query: 284 SLSNIDVVVQTGLSTAE-GLAVDWIGKNLYMFWAFWSLSPSNS-SDGGIEKAGMHGENRS 341
+++ +++ + E L + G + + ++K G+
Sbjct: 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIA--LDKEGITHR--- 114
Query: 342 PLVTKNI---QWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRV 398
P S+ + L + V +D + ++
Sbjct: 115 --FISRFKTGFQPKSVRFI-DNTRLAIPLLEDEGM-DV-LDINSGQTVRLSPPEKYKKKL 169
Query: 399 GIPNCRPEDNLWIGKNLYWVESNLDQIEVAKL-SGQFRRTLIAGDMESPRAIALDPRFGL 457
G L+ + + + V L + ++ T + + + + DP L
Sbjct: 170 GFVETISIPE---HNELWVSQMQANAVHVFDLKTLAYKAT-VDLTGKWSKILLYDPIRDL 225
Query: 458 LFWTDWDSKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDS 517
++ ++W S+ + + + + I + D P GL L +Y + +
Sbjct: 226 VYCSNWISEDISV----IDRKTKLEIRKTDK----IGLPRGLLLSKDGKELYIAQFSASN 277
Query: 518 IHTVT-----YDGKDHHVVLSNHDSLTHPFAIALF--ENHVYWTDWRTNSV 561
+ Y ++ + I EN +Y +D + +
Sbjct: 278 QESGGGRLGIYSMDKEKLI-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKI 327
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 34.3 bits (79), Expect = 0.13
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 122 CFNGEDEMFC--DEKQCLRSD---CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYL--HP 174
C G + C + +C C H C E + C C + L D C
Sbjct: 30 CSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
Query: 175 CEAWGTCSQDCEP 187
C + + +
Sbjct: 90 CGVLTSEKRAPDL 102
Score = 32.4 bits (74), Expect = 0.52
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 173 HPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE---LEPDMFTCKSKSKNDSSPF 222
PC G+C Y CTC GYE E C + + F
Sbjct: 11 QPCLHNGSCQDSI------WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF 57
Score = 32.4 bits (74), Expect = 0.61
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 589 VVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTC 631
+ K C H CL G Y C C +L D+K C
Sbjct: 41 LAKNECHPERTDGCQHFCLPGQES-YTCSCAQGYRLGEDHKQC 82
Score = 30.1 bits (68), Expect = 3.1
Identities = 13/100 (13%), Positives = 24/100 (24%), Gaps = 10/100 (10%)
Query: 10 CDGDEDCKDGSDELAEHCQD----RKCDESHFTC--NETLRCIPLAWACDGQPDCGLNDT 63
C + C+D C C+ + C T C C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCS---- 68
Query: 64 SDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQ 103
+ + + + + G T A + + Q
Sbjct: 69 CAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDLPWQ 108
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 33.1 bits (76), Expect = 0.32
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 598 NNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADS 636
C H CL G +Y C C +L D+K C D
Sbjct: 9 RTDGCQHFCLPG-QESYTCSCAQGYRLGEDHKQCVPHDQ 46
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 179 GTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSP 221
C C SY C+C GY L D C +
Sbjct: 11 DGCQHFC--LPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 51
Score = 28.9 bits (65), Expect = 7.5
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCS--YLHPCEAWGTCSQDCEP 187
C H C E + C C + L D C C + + +
Sbjct: 13 CQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPDL 61
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 33.0 bits (74), Expect = 0.35
Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 20/129 (15%)
Query: 68 HCVNDCTDWSDETNCT-----HSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC 122
+ CT+ S C+ C C + +P A + D E C
Sbjct: 34 YVSEHCTNTSL-RVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTC 92
Query: 123 FNGEDEMFCDEKQCLR-SDCHHDCYNTPEG-----FMCV-CPRDMYLQPDLITCSYLHPC 175
G MF C + C +G C C R + S + C
Sbjct: 93 PPG---MFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSD----VPSSVMKC 145
Query: 176 EAWGTCSQD 184
+A+ C
Sbjct: 146 KAYTDCLSQ 154
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 33.7 bits (76), Expect = 0.36
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 110 IPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHD--CYNTPEGFMCVCPRDMYLQPDLI 167
I + CL + C ++ C + ++C C YL
Sbjct: 598 IRQMAEVQSTAGVKPSCSRETAK--PCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE 655
Query: 168 TCSYLHPCE 176
+ + +
Sbjct: 656 REATVLSYD 664
Score = 30.2 bits (67), Expect = 3.6
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 5/53 (9%)
Query: 131 CDEKQCLRSDCHHD--CYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTC 181
C C + C +GF C C + P C+ +
Sbjct: 1015 GPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP---LCNDPGTTYIFSKG 1064
Score = 29.4 bits (65), Expect = 5.7
Identities = 12/96 (12%), Positives = 19/96 (19%), Gaps = 15/96 (15%)
Query: 123 FNG--EDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGT 180
F G D + P P + C G
Sbjct: 150 FKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEA------GEEGEGGVCLNGGV 203
Query: 181 CSQDCEPSVSNNSYKCTC-HAGYELEPDMFTCKSKS 215
CS ++ C C G+ + +
Sbjct: 204 CSV------VDDQAVCDCSRTGFRGKDCSQGKEEYI 233
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 32.5 bits (75), Expect = 0.41
Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 14/160 (8%)
Query: 405 PEDNLWIGKNLYWVESNLDQIEVAKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWD 464
I S QI++ GQF R A ++ PR + +D + G + +
Sbjct: 86 RNSGDII----VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK-GRIIVVECK 140
Query: 465 SKAPRIERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYD 524
R+ +G ++ + +PNG+ ++ + I+ D ++ + Y+
Sbjct: 141 VM--RVIIFDQNGN----VLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYE 193
Query: 525 GKDHHVVLSNHDSLTHPFAIAL-FENHVYWTDWRTNSVIR 563
G+ + + +P + + + D N +
Sbjct: 194 GQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLT 232
Score = 28.7 bits (65), Expect = 8.0
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 739 HPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTSTLSKISSIAV 796
+P+ +A+ I +I + N G++ + L + V
Sbjct: 78 YPNRVAVVR-NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI------LQHPRGVTV 128
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 32.7 bits (73), Expect = 0.52
Identities = 29/205 (14%), Positives = 50/205 (24%), Gaps = 30/205 (14%)
Query: 25 EHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTH 84
R E L +A + + +++ + +
Sbjct: 422 TSLGLRSLKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQV 481
Query: 85 SGNRTISAPACEPHEFDCQD-----VLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRS 139
P DC R C+ K + +GEP F E +CL
Sbjct: 482 CHALCSPEGCWGPEPRDCVSCRNVSRGRECVDKCKLLEGEPREFVENSECIQCHPECLPQ 541
Query: 140 DCH-----------HDCYNTPEGFMCV--CPRDMYLQPDLITCSYL------HPCEAWGT 180
+ C + +G CV CP + + + + Y H C
Sbjct: 542 AMNITCTGRGPDNCIQCAHYIDGPHCVKTCPAGVMGENNTLVWKYADAGHVCHLCH--PN 599
Query: 181 CSQDCEPSVSNNSYKCT-CHAGYEL 204
C+ C C +
Sbjct: 600 CTYGCTGPGLRG---CPTNGPKHHH 621
Score = 28.8 bits (63), Expect = 9.5
Identities = 22/197 (11%), Positives = 39/197 (19%), Gaps = 8/197 (4%)
Query: 25 EHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDE--TNC 82
C + C + + L I A C G+ + C CT + C
Sbjct: 168 PSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCLVC 227
Query: 83 THSGNRTISAPACEPHEFDCQDVLRTCIPKALVCD--GEPACFNGEDEMFCDEKQCLRSD 140
+ C P G +
Sbjct: 228 RKFRDEATCKDTCPPLML-YNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRA 286
Query: 141 CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHA 200
C D Y E + C + + ++ + +
Sbjct: 287 CGADSYEMEEDGVRKCKKCEGPCR---KVCNGIGIGEFKDSLSINATNIKHFKNCTSISG 343
Query: 201 GYELEPDMFTCKSKSKN 217
+ P F S +
Sbjct: 344 DLHILPVAFRGDSFTHT 360
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 32.5 bits (73), Expect = 0.55
Identities = 23/180 (12%), Positives = 58/180 (32%), Gaps = 6/180 (3%)
Query: 32 CDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTIS 91
+E ++ C T RC + + G+ C N+ C+ C+ ++T C + +
Sbjct: 168 NNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYA 227
Query: 92 A---PACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT 148
PAC P+ + + C+ + + A + + + +C+ +C
Sbjct: 228 GVCVPACPPNTYRFEG--WRCVDRDFCANILSAESSDSEGFVIHDGECM-QECPSGFIRN 284
Query: 149 PEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDM 208
M P + ++ + ++ + G + ++
Sbjct: 285 GSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASEL 344
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 32.8 bits (74), Expect = 0.56
Identities = 28/174 (16%), Positives = 38/174 (21%), Gaps = 25/174 (14%)
Query: 52 CDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIP 111
G C D + C ++ + + V C
Sbjct: 380 IPGLKSCMGLKIGDTVSFSIEAK----VRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC-- 433
Query: 112 KALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171
C + C C G C C + Y CS
Sbjct: 434 ---DCACQAQAEPNSHRCNNGNGTFECGVCR--CGPGWLGSQCECSEEDYRPSQQDECS- 487
Query: 172 LHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY-------ELEPDMFTCKSKSKND 218
P E CSQ E +C CH+ E D F+C
Sbjct: 488 --PREGQPVCSQRGECL----CGQCVCHSSDFGKITGKYCECDDFSCVRYKGEM 535
Score = 31.2 bits (70), Expect = 1.8
Identities = 13/91 (14%), Positives = 23/91 (25%)
Query: 111 PKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
P+ L C N E L+ + C ++ +
Sbjct: 363 PEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFK 422
Query: 171 YLHPCEAWGTCSQDCEPSVSNNSYKCTCHAG 201
+ C C+ NS++C G
Sbjct: 423 DSLIVQVTFDCDCACQAQAEPNSHRCNNGNG 453
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 31.2 bits (70), Expect = 0.74
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 34/143 (23%)
Query: 58 CGLNDTSDEDHCVNDCTDWSD---------ETNCTHSGNRTISAPACEPHEFDCQDVLRT 108
C + ++ + C S ++CT + C +++
Sbjct: 45 CESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCG---CRKNQY-RHYWSEN 100
Query: 109 CIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLIT 168
C C NG + C EKQ NT C C +L+ +
Sbjct: 101 LFQ----CFNCSLCLNGTVHLSCQEKQ-----------NTV----CTCHAGFFLREN--E 139
Query: 169 CSYLHPCEAWGTCSQDCEPSVSN 191
C C+ C++ C P + N
Sbjct: 140 CVSCSNCKKSLECTKLCLPQIEN 162
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.8 bits (70), Expect = 0.84
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 173 HPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203
+PCE G C +++ S+ C C G+
Sbjct: 6 NPCENGGICLPG----LADGSFSCECPDGFT 32
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response,
innate immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 32.1 bits (72), Expect = 0.98
Identities = 26/154 (16%), Positives = 40/154 (25%), Gaps = 7/154 (4%)
Query: 77 SDETNCTHSGNRTI---SAPACE----PHEFDCQDVLRTCIPKALVCDGEPACFNGEDEM 129
S + C +G ++ S P CE P + T P + G+ + +
Sbjct: 354 SSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHP 413
Query: 130 FCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
L + C + P+G + H A +
Sbjct: 414 DRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFP 473
Query: 190 SNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFV 223
S K C Y P TC S V
Sbjct: 474 IGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDV 507
Score = 30.2 bits (67), Expect = 4.0
Identities = 26/211 (12%), Positives = 46/211 (21%), Gaps = 18/211 (8%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDW-----SDETN 81
C C + C + S ++
Sbjct: 1200 TPQGDWSPEAPRC-AVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSH 1258
Query: 82 CTHSGNRTI---SAPACEPHEFDCQDVL----RTCIPKALVCDGEPACFNGEDEMFCDEK 134
C G R++ S P CE + T P + G+ + +
Sbjct: 1259 CVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDRGMT 1318
Query: 135 QCLRSD----CHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVS 190
L + C D + ++ ++ P A T +
Sbjct: 1319 FNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPF-ASPTIPINDFEFPV 1377
Query: 191 NNSYKCTCHAGYELEPDMFTCKSKSKNDSSP 221
S C GY + +C S
Sbjct: 1378 GTSLNYECRPGYFGKMFSISCLENLVWSSVE 1408
Score = 29.4 bits (65), Expect = 6.6
Identities = 29/219 (13%), Positives = 60/219 (27%), Gaps = 28/219 (12%)
Query: 31 KCDESHFTCNETLRCIPLAWACDGQPDCGL----NDTSDEDHCVNDCTDWSDETNCT--- 83
+C ++ ++ C+ + C + V+ TD +
Sbjct: 481 ECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVITDIQVGSRINYSC 540
Query: 84 HSGNRTISAPA--CEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDC 141
+G+R I + C + I + + C P NG+ E S
Sbjct: 541 TTGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVV 600
Query: 142 HHDC---YNTPEGFMCVCPRDMYLQPD---------------LITCSYLHPCEAWGTCSQ 183
+ C + F V +Y + + E S
Sbjct: 601 TYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPNKCTPPNVENGILVSD 660
Query: 184 DCEPSVSNNSYKCTCHAGYELE-PDMFTCKSKSKNDSSP 221
+ N + C G+ ++ P C++ +K +
Sbjct: 661 NRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPEL 699
Score = 29.0 bits (64), Expect = 8.6
Identities = 26/154 (16%), Positives = 40/154 (25%), Gaps = 7/154 (4%)
Query: 77 SDETNCTHSGNRTI---SAPACE----PHEFDCQDVLRTCIPKALVCDGEPACFNGEDEM 129
S + C +G ++ S P CE P + T P + G+ + +
Sbjct: 804 SSASYCVLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHP 863
Query: 130 FCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
L + C + P+G + H A +
Sbjct: 864 DRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRCGILGHCQAPDHFLFAKLKTQTNASDFP 923
Query: 190 SNNSYKCTCHAGYELEPDMFTCKSKSKNDSSPFV 223
S K C Y P TC S V
Sbjct: 924 IGTSLKYECRPEYYGRPFSITCLDNLVWSSPKDV 957
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 31.3 bits (70), Expect = 1.1
Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 7/75 (9%)
Query: 138 RSDCHHD--CYNTPEGFMCVCPRDMYLQPDLITCS-YLHPCEAWGTCS--QDCEPSVSNN 192
R C C + GF C C + + C P G S
Sbjct: 12 RHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGSPQRVNGKVKGRIFVGSSQVPV 69
Query: 193 SYKCTCHAGYELEPD 207
++ T Y +
Sbjct: 70 VFENTDLHSYVVMNH 84
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 32.0 bits (72), Expect = 1.1
Identities = 23/218 (10%), Positives = 48/218 (22%), Gaps = 16/218 (7%)
Query: 10 CDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLR-CIPLAWACDGQPDCGLNDTSDEDH 68
+ C+ + C + + D ++ C P + + D +
Sbjct: 757 SNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEK 816
Query: 69 CVNDCTDW-----SDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACF 123
C + +E C G E + + E
Sbjct: 817 VSVLCQENYLIQEGEEITCK-DGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAH 875
Query: 124 NGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQ 183
+ C+ + + CY C + C P + G +
Sbjct: 876 GTKLSYTCEGGFRISEENETTCYMGKWSSPPQCEG--------LPCKSP-PEISHGVVAH 926
Query: 184 DCEPSVSNNSYKCTCHAGYELEPDMFTCKSKSKNDSSP 221
+ C G+ ++ K P
Sbjct: 927 MSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWSHPP 964
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 31.1 bits (70), Expect = 1.6
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 167 ITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYELEPDMFTCKS 213
C L P G + +C GY++ D +
Sbjct: 280 NECPELQPP-VHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDT 325
Score = 29.6 bits (66), Expect = 4.5
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 123 FNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171
+ D C E++ C H C+N G+ C C L D TC
Sbjct: 116 YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.1 bits (70), Expect = 1.8
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 7/73 (9%)
Query: 124 NGEDEMFCDEK--QCLRSDCHHD--CYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWG 179
NG+ E C+ C C + C +GF C C + P C+ +
Sbjct: 174 NGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGP---LCNDPGTTYIFS 230
Query: 180 TCSQDCEPSVSNN 192
N
Sbjct: 231 KGGGQITYKWPPN 243
>3fub_A GDNF family receptor alpha-1; gfralpha1, all alpha GDNF, cystine
knot, cell membrane, GLYC GPI-anchor, lipoprotein,
membrane; HET: NAG; 2.35A {Rattus norvegicus}
Length = 281
Score = 30.6 bits (68), Expect = 1.8
Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 33/196 (16%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDR----KCDESHFTCNETLRC----IPLAWACD 53
C+ A C+ D+ CK C C+ C++ LR +P +
Sbjct: 9 NCLDAAKACNLDDTCKKYRSAYITPCTTSMSNEVCNRRK--CHKALRQFFDKVPAKHSYG 66
Query: 54 GQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPAC---EPHEFDCQDVLRTCI 110
C C D CT +TI P C E +C + +C
Sbjct: 67 MLF-C-------------SCRD----IACTERRRQTIV-PVCSYEERERPNCLSLQDSCK 107
Query: 111 PKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
+ C A F + + + DC G + Y+ ++ +
Sbjct: 108 TNYI-CRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNYVDSSSLSVA 166
Query: 171 YLHPCEAWGTCSQDCE 186
C G +DC
Sbjct: 167 PWCDCSNSGNDLEDCL 182
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.7 bits (68), Expect = 2.1
Identities = 14/73 (19%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 131 CDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVS 190
C Q R + G + C L C C CEP
Sbjct: 30 CLSLQITRISAFFQHFQ-NNGSLVWCQNHKQCSKCLEPCKESGDLRK-HQCQSFCEPLFP 87
Query: 191 NNSYKCTCHAGYE 203
SY+C +
Sbjct: 88 KKSYECLTSCEFL 100
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.4 bits (68), Expect = 2.3
Identities = 28/194 (14%), Positives = 44/194 (22%), Gaps = 36/194 (18%)
Query: 26 HCQDRKCDESHFTCNETLRCIPLAWA-CDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTH 84
H R + A L ++ V C C H
Sbjct: 141 HSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNH 200
Query: 85 SGNRTISAPACEPHEFDCQDVLRTCIP--KALVCDGE-PACFNGEDEMFCDEKQCLRSDC 141
++ C +C C P C+ G C E+ + C
Sbjct: 201 LCTACMNNGVCHEDTGEC-----ICPPGFMGRTCEKACELHTFGRT---CKERCSGQEGC 252
Query: 142 HHDCYNTPEGFMCVCP------------RDMYLQPDLITCSYLHPCEAWGTCSQDCEPSV 189
+ P+ + C C + PD C C C
Sbjct: 253 KSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPD---CKLRCSCNNGEMC-------- 301
Query: 190 SNNSYKCTCHAGYE 203
+ C C G++
Sbjct: 302 -DRFQGCLCSPGWQ 314
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 27.1 bits (61), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 174 PCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203
PC G+C +D NSY+C C G+E
Sbjct: 10 PCLNGGSC-KDDI-----NSYECWCPFGFE 33
>2v5e_A GDNF family receptor alpha-1; receptor/glycoprotein complex,
alternative splicing, cell membrane, growth factor,
ligand-coreceptor; HET: SCR NAG; 2.35A {Rattus
norvegicus}
Length = 200
Score = 30.2 bits (67), Expect = 2.4
Identities = 36/196 (18%), Positives = 58/196 (29%), Gaps = 33/196 (16%)
Query: 2 TCIIAYWKCDGDEDCKDGSDELAEHCQDR----KCDESHFTCNETLRC----IPLAWACD 53
C+ A C+ D+ CK C C+ C++ LR +P +
Sbjct: 4 NCLDAAKACNLDDTCKKYRSAYITPCTTSMSNEVCNRRK--CHKALRQFFDKVPAKHSY- 60
Query: 54 GQPDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPAC---EPHEFDCQDVLRTCI 110
G C C D CT +TI P C E +C + +C
Sbjct: 61 GMLFC-------------SCRD----IACTERRRQTIV-PVCSYEERERPNCLSLQDSCK 102
Query: 111 PKALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCS 170
+ C A F + + + DC G + Y+ ++ +
Sbjct: 103 TNYI-CRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVMTPNYVDSSSLSVA 161
Query: 171 YLHPCEAWGTCSQDCE 186
C G +DC
Sbjct: 162 PWCDCSNSGNDLEDCL 177
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 30.8 bits (69), Expect = 2.5
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 580 TQPFIYV-NGVVKKSPCEMNNGNCSHLCLIGMNGTYKCQCPHVMKLMSDNKTCQVADSQF 638
P+ Y + + C++ C C+ Y + M CQ DSQ
Sbjct: 141 QGPWCYTTDPEKRYDYCDILE--CEEECMHCSGENYDGKISKTM----SGLECQAWDSQS 194
Query: 639 IIFSR--PREIRGVDLEHPY 656
P + +L+ Y
Sbjct: 195 PHAHGYIPSKFPNKNLKKNY 214
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 30.4 bits (68), Expect = 2.6
Identities = 26/196 (13%), Positives = 49/196 (25%), Gaps = 25/196 (12%)
Query: 14 EDCKDGSDELAEHCQDRKCDESHFTCNETLRCIP--LAWACDGQPDCGLNDTSDEDHCVN 71
E C D + N +C + +C L + +
Sbjct: 293 ELCMDF------YHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCD 346
Query: 72 DCTDWSDETNCTHSGNRTISAPACEPHEFD--CQDVLRTCIPKALVCDGEPACFNGEDEM 129
+C + NC C+P F +D+ + + CD + G +
Sbjct: 347 NCQHNTMGRNC----------EQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDG 396
Query: 130 FCDEKQCLRSDCHHDCYNTP--EGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEP 187
+ D L + C EG C ++ + C +
Sbjct: 397 YTDFSVGLIAGQ---CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGN 453
Query: 188 SVSNNSYKCTCHAGYE 203
+ + C C
Sbjct: 454 PCDSETGYCYCKRLVT 469
Score = 28.5 bits (63), Expect = 9.8
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 127 DEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCE 186
D + +C + G C + Y Q + CE C+
Sbjct: 330 DMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP-----CTCD 384
Query: 187 PSVSNNSYKCTCHAGYELEPDMFTCKSK 214
P+ S N C + + + C+ K
Sbjct: 385 PAGSENGGICDGYTDFSVGLIAGQCRCK 412
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 30.2 bits (67), Expect = 3.2
Identities = 22/205 (10%), Positives = 51/205 (24%), Gaps = 12/205 (5%)
Query: 4 IIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDT 63
+I + + ++ + + RK + + + +C P +G+P +
Sbjct: 461 VIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAP--CPNNGRPTLSGTEC 518
Query: 64 SDEDH----CVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGE 119
N D + G + + R C G
Sbjct: 519 LCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTREC-NNPAPQRGG 577
Query: 120 PACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWG 179
C + + ++ + D+ C P E G
Sbjct: 578 KRCEGEKRQEEDCTFSI----MENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPEN-G 632
Query: 180 TCSQDCEPSVSNNSYKCTCHAGYEL 204
+ + + + +C G+E
Sbjct: 633 FIRNEKQLYLVGEDVEISCLTGFET 657
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 29.3 bits (65), Expect = 3.3
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 202 YELEPDMFTCKSKSKNDSSPFVIFSNRHELRGVDLRTFNVIALISSLKN-----TIALDF 256
Y +P D +I + + F + ++S+ KN TIA++
Sbjct: 93 YLTDPKWPGLDGNGNYD---MIIT--------IGFKKFYINQVLSAAKNFSNLKTIAIER 141
Query: 257 YYTPTANMVFWTDVIDDKIYNA 278
Y A M F ++ Y A
Sbjct: 142 GYIQNATMSF-GNLSKADHYAA 162
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 30.2 bits (68), Expect = 3.4
Identities = 24/181 (13%), Positives = 36/181 (19%), Gaps = 32/181 (17%)
Query: 24 AEHCQDRKCDESHFTCNETLRCIPLAWACDGQPD-CGLNDT---SDEDHCV-NDCTDWSD 78
A C R C H C W + Q + C L + +
Sbjct: 223 AFVCG-RICT-HHPGC-LFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFS 279
Query: 79 ETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLR 138
+C HS H + E + C +
Sbjct: 280 LQSCRHS-------IPVFCH--------SSFYHDTDFLGEELDIVAAKSHEACQKLCTNA 324
Query: 139 SDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTC 198
C Y TP C + S T +S + +
Sbjct: 325 VRCQFFTY-TPAQASCNEGKGKCYLKLSSNGS--------PTKILHGRGGISGYTLRLCK 375
Query: 199 H 199
Sbjct: 376 M 376
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 30.0 bits (66), Expect = 4.2
Identities = 28/205 (13%), Positives = 46/205 (22%), Gaps = 16/205 (7%)
Query: 1 MTCIIAYWKCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGL 60
I + E + T T+ + +C
Sbjct: 415 QQGITSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTA 474
Query: 61 NDTSDEDHCVNDCTDWSDETN---CTHSGNRTISAPAC-----EPHEFDCQDVLRTCIPK 112
C +D C I +C E EF+ + C P+
Sbjct: 475 EGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQ 534
Query: 113 ALVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNT-PEGFMCVCPRDMYLQPDLITCSY 171
+ +G C +C +C P+G C
Sbjct: 535 CEKMEDGLLTCHGPGPDNC--TKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHP 592
Query: 172 LHPCEAWGTCSQDCEPSVSNNSYKC 196
HP C+Q C S++
Sbjct: 593 CHP-----NCTQGCNGPTSHDCIYY 612
Score = 28.9 bits (63), Expect = 9.7
Identities = 23/180 (12%), Positives = 40/180 (22%), Gaps = 7/180 (3%)
Query: 9 KCDGDEDCKDGSDELAEHCQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDH 68
K +G+ + D T+R I P + + +
Sbjct: 337 KINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNL 396
Query: 69 CVNDCTDWSDETNCTHSGNRTI-SAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGED 127
+ + I S E ++ T N
Sbjct: 397 VTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGNIYITDNSNLCYYH----TINWTT 452
Query: 128 EMFCDEKQCLRSDCHHDCYNTPEGFMC--VCPRDMYLQPDLITCSYLHPCEAWGTCSQDC 185
++ + D T EG +C +C D P C C + C
Sbjct: 453 LFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICIESC 512
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 29.6 bits (65), Expect = 5.5
Identities = 22/145 (15%), Positives = 34/145 (23%), Gaps = 11/145 (7%)
Query: 75 DWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKALVCDGEPACFNGEDEMFCDEK 134
WS+ + A E C + C GE +
Sbjct: 141 QWSEIVSNGTDAYYNYDFTAPERECPKCHESCTHG------CWGEGPKNCQKFSKLTCSP 194
Query: 135 QCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPS--VSNN 192
QC C+ C Q D I C G C ++C P +
Sbjct: 195 QCAGGRCYGPKPRECCHLFCAGGCTGPTQKDCIACKNFFDE---GVCKEECPPMRKYNPT 251
Query: 193 SYKCTCHAGYELEPDMFTCKSKSKN 217
+Y + + K +
Sbjct: 252 TYVLETNPEGKYAYGATCVKECPGH 276
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 29.2 bits (66), Expect = 5.5
Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 42/191 (21%)
Query: 260 PTANMVFWTDVIDDKIYNATLIGNSLSNIDVVVQTG-----------LSTAEGLA-VDWI 307
P + +W ++++ +++ L + + +++ +GL D
Sbjct: 58 PASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGLFLRDTA 117
Query: 308 GKNLYMFWAFWSLSPSN-SSDGGIEKAG------MHGENRSP-------------LVTKN 347
L + S P N S+DG + +G M + + + +
Sbjct: 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD 177
Query: 348 IQWPSSLVIDYNQDILYWCDSHLNTVESVRVDGSERTVSFNLEVLGSDSRVGIPNCRP-- 405
I P+S+ + Y+ D+ +N + V +D + EV + +
Sbjct: 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG---GMDG 234
Query: 406 -----EDNLWI 411
E ++W
Sbjct: 235 SVCDAEGHIWN 245
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 29.1 bits (65), Expect = 5.6
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 123 FNGEDEMFCDEKQCLRSDCHHDCYNTPEGFMCVCPRDMYLQPDLITCSY 171
+ D C E++ C H C+N G+ C C L D TC
Sbjct: 116 YMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRV 164
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 27.3 bits (60), Expect = 6.1
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 594 PCEMNNGNCSH--LCLIGMNGTYKCQCPHVM-KLMSDNKTCQ 632
C+ NG C+ C + C+C + + + C
Sbjct: 48 TCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCS 89
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 28.8 bits (64), Expect = 6.3
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 26/111 (23%)
Query: 95 CEPHEFDCQDVLRTCIPKA--LVCDGEPACFNGEDEMFCDEKQCLRSDCHHDCYNTPEGF 152
C+ Q++ +C ++C G C G+ C SD G
Sbjct: 122 CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC-------LCHTSDVPGKLIY---GQ 171
Query: 153 MCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203
C C + + C G C KC CH G+E
Sbjct: 172 YCECDTINCERYNGQVCG----GPGRGLCF----------CGKCRCHPGFE 208
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.5 bits (65), Expect = 6.5
Identities = 32/175 (18%), Positives = 45/175 (25%), Gaps = 44/175 (25%)
Query: 62 DTSDEDHCVNDCTDWS-DETNCTHSGNRTISAPACEPHEFDCQDV------LRTCIPKAL 114
+ D + C + C + +TNC + C CQ V C + L
Sbjct: 148 NKDDNEECGDICPGTAKGKTNCPATVINGQFVERC-WTHSHCQKVCPTICKSHGCTAEGL 206
Query: 115 VCDGEPACFNGEDEMFCDEKQCLRSDCHHDCY---NTPEGFMCV--CPRDMYLQPDLITC 169
C E C C + D C N CV CP Y D
Sbjct: 207 CCHSE--CLGN----------CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQD---- 250
Query: 170 SYLHPCEAWGTCSQDCEPSVSNNSYKC------------TCHAGYELEPDMFTCK 212
C + C ++ C C +GY + C
Sbjct: 251 ---WRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCT 302
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 29.0 bits (64), Expect = 7.1
Identities = 26/160 (16%), Positives = 43/160 (26%), Gaps = 21/160 (13%)
Query: 56 PDCGLNDTSDEDHCVNDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLR----TCIP 111
G DT+ + TD G + + + D+ C
Sbjct: 242 SLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNL 301
Query: 112 KALVCDGEP-----ACFNGEDEMFCDEKQCLRSD--CHH-DCYNTPEGFMCVCPRDMYLQ 163
A VC + C + C + + P+G C +
Sbjct: 302 HATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSI 361
Query: 164 PDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGYE 203
+ + L C+ GTC N+ +C C A Y
Sbjct: 362 GTNVCDNELLHCQNGGTCH---------NNVRCLCPAAYT 392
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 29.0 bits (65), Expect = 7.7
Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 18/154 (11%)
Query: 412 GKNLYWVESNLDQIEV--AKLSGQFRRTLIAGDMESPRAIALDPRFGLLFWTDWDSKAPR 469
G +Y ++ + + + + T+ AG SP+ +A+ P ++ T+ S
Sbjct: 43 GTKVYVANAHSNDVSIIDTA-TNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLS 99
Query: 470 IERCSMSGEHRSVIVRVDLLTSRGAWPNGLTLDYQLTRIYWIDAKSDSIHTVTYDGKDHH 529
+ + +V V G P GL L ++Y + ++ + +
Sbjct: 100 V----IDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNGDKTVSVI--NTVTKA 149
Query: 530 VVLSNHDSLTHPFAIALFEN--HVYWTDWRTNSV 561
V+ + P IA+ + VY ++ + S+
Sbjct: 150 VI-NTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 28.9 bits (64), Expect = 7.9
Identities = 23/206 (11%), Positives = 54/206 (26%), Gaps = 48/206 (23%)
Query: 548 ENHVYWTDWRTNSVIRANKWNGSDVTLIQRTLTQPFIYVNGVVKKSPCEMNNGNCSHLCL 607
N ++T + VI+ + G + + P+ N C +
Sbjct: 29 TNKGFYTSVQDGRVIK---YEGPNSGFVDFAYASPY-------------WNKAFCENS-- 70
Query: 608 IGMNGTYKCQCPHVMKLMSDNKTCQVADSQFIIFSRPREIRGVDLEHPYYHTIPTISIPQ 667
C + + N + D + + E +P
Sbjct: 71 TDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVP------ 124
Query: 668 VFSPNNLNFDAANKKIYWTD-------QEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSK 720
+ D +Y+TD + ++ +S G++ P +K
Sbjct: 125 FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL---------IKYDPSTK 175
Query: 721 RSSIVGGQIQLVVDAGISHPSGLAID 746
++ ++ + P G +
Sbjct: 176 ETT--------LLLKELHVPGGAEVS 193
Score = 28.5 bits (63), Expect = 9.3
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 667 QVFSPNNLNFDAANKKIYWTDQEYNEVKRSSIVGGQIQLVVDAVFEFYLTPLSKRSSIVG 726
++PN+ FD+ NK Y T + V + +F +
Sbjct: 17 PSYAPNSFTFDSTNKGFY-TSVQDGRVIKYEGPNSG-------FVDFAYASPYWNKAFCE 68
Query: 727 GQIQLVVDAGISHPSGLAIDWIAQNMFIAVSSPTQSKIVVCNLEGEYQTTILSNESNDTS 786
++ + ++I + V EG + T + + S D
Sbjct: 69 NSTDAEKRPLCGRTYDISYNLQNNQLYIV---DCYYHLSVVGSEGGHATQLAT--SVDGV 123
Query: 787 TLSKISSIAVWPVKGKMFWSNVT 809
+ ++ V G +++++V+
Sbjct: 124 PFKWLYAVTVDQRTGIVYFTDVS 146
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 25.9 bits (57), Expect = 8.0
Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 169 CSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY 202
SY C G C S +SY C C GY
Sbjct: 8 SSYDGYCLNGGVC----MHIESLDSYTCNCVIGY 37
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 28.9 bits (64), Expect = 9.2
Identities = 30/211 (14%), Positives = 53/211 (25%), Gaps = 41/211 (19%)
Query: 33 DESHFTCNETLRCIPLAWACDGQPDCGLNDT-SDEDHCVNDCTDWSDET--NCTHSGNRT 89
+ + +C E + +C E + T N H+G+
Sbjct: 469 PDVNSSCGEGYKLS-----GSVYQECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSL 523
Query: 90 ISAPACEPHEFDCQDVLRTCIPKALVCDGEPAC-FNGEDEMFCDEK--QCLRSDCHHDCY 146
P + C + +L+ + C N ++ C S C
Sbjct: 524 EDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCS 583
Query: 147 N--TPEGFMCVCPRDMYLQPDLITCS-----YLHP-----CEAWGTCSQD---CEPSVSN 191
+ G+ Y D +T L C+A T + CE
Sbjct: 584 HVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPEIPVCEKETCQ 643
Query: 192 N---------------SYKCTCHAGYELEPD 207
+ +C GY+L
Sbjct: 644 HVRQSLQELPAGSRVELVNTSCQDGYQLTGH 674
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 28.8 bits (63), Expect = 9.3
Identities = 24/199 (12%), Positives = 42/199 (21%), Gaps = 11/199 (5%)
Query: 27 CQDRKCDESHFTCNETLRCIPLAWACDGQPDCGLNDTSDEDHCVNDCTDWSDETNCTH-- 84
+ R C C + C Q G TS C C
Sbjct: 166 NRSRACPPCAPACKDNHCWGESPEDC--QILTGTICTSGCARCKGRLPTDCCHEQCAAGC 223
Query: 85 SGNRTISAPACEPHEFD--CQDVLRTCIPKALVCDGEPACFNGEDEMFCDEKQCLRSDCH 142
+G + AC C+ C + + + C+ + +
Sbjct: 224 TGPKHSDCLACLHFNHSGICEL---HCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPY 280
Query: 143 HDCYNTPEGFMCVCPRDMYLQPDLITCSYLHPCEAWGTCSQDCEPSVSNNSYKCTCHAGY 202
+ VCP + C C++ C +
Sbjct: 281 NYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEKCS--KPCARVCYGLGMEHLRGARAITSD 338
Query: 203 ELEPDMFTCKSKSKNDSSP 221
++ K P
Sbjct: 339 NVQEFDGCKKIFGSLAFLP 357
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein,
zinc BIN dimer, conformational change, cell adhesion;
HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A*
1e8b_A* 1qo6_A 2fn2_A*
Length = 308
Score = 28.4 bits (62), Expect = 9.9
Identities = 30/169 (17%), Positives = 41/169 (24%), Gaps = 32/169 (18%)
Query: 7 YWKCDGDEDCKDGS---DELAEHCQDRKCDESHFTCNETLRCIPLAW-----ACDGQPDC 58
+ D D K G E C + + C G
Sbjct: 151 GTTQNYDADQKFGFCPMAAHEEICTTNEGVMYRI--GDQWDKQHDMGHMMRCTCVGNGRG 208
Query: 59 GLNDTSDEDHCV--NDCTDWSDETNCTHSGNRTISAPACEPHEFDCQDVLRTCIPKA--- 113
E C+ + D + T++ N T E H +C TC +
Sbjct: 209 -------EWTCIAYSQLRDQCIVDDITYNVNDTFHKRHEEGHMLNC-----TCFGQGRGR 256
Query: 114 LVCDGEPACFNGEDEMFCD-----EKQCLRSDCHHDCYNTPEGFMCVCP 157
CD C + E F EK CY G P
Sbjct: 257 WKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQP 305
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.435
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,967,568
Number of extensions: 783174
Number of successful extensions: 2961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2005
Number of HSP's successfully gapped: 484
Length of query: 841
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 739
Effective length of database: 3,853,851
Effective search space: 2847995889
Effective search space used: 2847995889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)