BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14258
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 189/376 (50%), Gaps = 69/376 (18%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
L P G+A D +++T R +E S LDG+ R K+++ +
Sbjct: 83 LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 124
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
L +PR IALDP+SG+M++T WG P +ER+ +DG+ RF ++ +I +P G
Sbjct: 125 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 175
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
+T+D+ + +YW D L+FI + N DGT+R+ + KG + + + +T+FE+ L+ T W
Sbjct: 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 234
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP--------STFLLYAKGKP- 331
SI+ NK+ + I ++ P IH + +Q+QP+A P S L + KP
Sbjct: 235 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 294
Query: 332 ---------AIIKGLTFKRDGTTEQAIMP-ITDLKRPSV--------------------I 361
+++ +DG TE ++ TDL+R S+ I
Sbjct: 295 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 354
Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
DY E YIY+ + I R + G G + V+ I + +G+AVDW+A NLYWTD G
Sbjct: 355 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 414
Query: 422 TINVAKISDFSIRKVL 437
I V +++ ++RK+L
Sbjct: 415 RIEVTRLNG-TMRKIL 429
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 23/205 (11%)
Query: 107 GIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYF----------- 155
I DP GY+++T + RS +DG+ +VT +I +P+ I
Sbjct: 353 AIDYDPVEGYIYWTD--DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410
Query: 156 -CTHYMEHCM-------IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 207
T +E I I +L +PR I LDP GYM++T WG P +ER+ LDG++
Sbjct: 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSD 469
Query: 208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDIT 267
R +V + +P G+ +D+ +YW D D I+ +N DGT R+ + + + +++ T
Sbjct: 470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-KIPHIFGFT 528
Query: 268 VFENNLFVTSWRNQSIIRVNKFNSD 292
+ + ++ T W+ +SI RV+K +++
Sbjct: 529 LLGDYVYWTDWQRRSIERVHKRSAE 553
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 96 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYF 155
I I +L +PR I LDP GYM++T WG P +ER+ LDG++R
Sbjct: 428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDR---------------- 470
Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG-ATRPMLERSLLDGTERFPMVTH 214
++ ++ +L P G+ALD G ++ WG A +E DGT R +V
Sbjct: 471 --------VVLVNTSLGWPNGLALDYDEGKIY---WGDAKTDKIEVMNTDGTGRRVLVED 519
Query: 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP 259
KI + +G T +VYW D I+R++ +R+ I P
Sbjct: 520 KIPHIFGFT--LLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLP 562
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
+ LLYA + + T + E A + + L+ + +D+ IY+++++ I
Sbjct: 9 APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 64
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
+R + F + + V V+ +G+ + +G+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 65 KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 122
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 56/242 (23%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD 235
I DP GY+++T + RS +DG+ +VT +I +P G+ VD+ +++YW D
Sbjct: 353 AIDYDPVEGYIYWTD--DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410
Query: 236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295
T D I+ +GT RK + S+D E
Sbjct: 411 TGTDRIEVTRLNGTMRKILI-----------------------------------SEDLE 435
Query: 296 TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL 355
P AI L P +Y I K DG+ ++ ++ T L
Sbjct: 436 ------EPRAI----------VLDPMVGYMYWTDWGEIPKIERAALDGS-DRVVLVNTSL 478
Query: 356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYW 415
P+ + E IY+ + + IE G G+ V+++ I ++ G + + + +YW
Sbjct: 479 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTL--LGDYVYW 536
Query: 416 TD 417
TD
Sbjct: 537 TD 538
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIY 399
R T + I+ DL+ P I Y+Y+ + IER + G + V+++T +
Sbjct: 420 RLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG 479
Query: 400 NVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
G+A+D+ +YW DA I V +D + R+VL +
Sbjct: 480 WPNGLALDYDEGKIYWGDAKTDKIEVMN-TDGTGRRVLVE 518
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 198 LERSLLDGTERFP-MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
++R+ + TE +V ++ P G+ D+ + +YW D+ + I+ N DG+ RK +
Sbjct: 64 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 189/376 (50%), Gaps = 69/376 (18%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
L P G+A D +++T R +E S LDG+ R K+++ +
Sbjct: 75 LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 116
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
L +PR IALDP+SG+M++T WG P +ER+ +DG+ RF ++ +I +P G
Sbjct: 117 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 167
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
+T+D+ + +YW D L+FI + N DGT+R+ + KG + + + +T+FE+ L+ T W
Sbjct: 168 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 226
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP--------STFLLYAKGKP- 331
SI+ NK+ + I ++ P IH + +Q+QP+A P S L + KP
Sbjct: 227 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 286
Query: 332 ---------AIIKGLTFKRDGTTEQAIMP-ITDLKRPSV--------------------I 361
+++ +DG TE ++ TDL+R S+ I
Sbjct: 287 YQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAI 346
Query: 362 DYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421
DY E YIY+ + I R + G G + V+ I + +G+AVDW+A NLYWTD G
Sbjct: 347 DYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 406
Query: 422 TINVAKISDFSIRKVL 437
I V +++ ++RK+L
Sbjct: 407 RIEVTRLNG-TMRKIL 421
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 106/205 (51%), Gaps = 23/205 (11%)
Query: 107 GIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYF----------- 155
I DP GY+++T + RS +DG+ +VT +I +P+ I
Sbjct: 345 AIDYDPVEGYIYWTD--DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 402
Query: 156 -CTHYMEHCM-------IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 207
T +E I I +L +PR I LDP GYM++T WG P +ER+ LDG++
Sbjct: 403 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSD 461
Query: 208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDIT 267
R +V + +P G+ +D+ +YW D D I+ +N DGT R+ + + + +++ T
Sbjct: 462 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-KIPHIFGFT 520
Query: 268 VFENNLFVTSWRNQSIIRVNKFNSD 292
+ + ++ T W+ +SI RV+K +++
Sbjct: 521 LLGDYVYWTDWQRRSIERVHKRSAE 545
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 96 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYF 155
I I +L +PR I LDP GYM++T WG P +ER+ LDG++R
Sbjct: 420 ILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDR---------------- 462
Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG-ATRPMLERSLLDGTERFPMVTH 214
++ ++ +L P G+ALD G ++ WG A +E DGT R +V
Sbjct: 463 --------VVLVNTSLGWPNGLALDYDEGKIY---WGDAKTDKIEVMNTDGTGRRVLVED 511
Query: 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP 259
KI + +G T +VYW D I+R++ +R+ I P
Sbjct: 512 KIPHIFGFT--LLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLP 554
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
+ LLYA + + T + E A + + L+ + +D+ IY+++++ I
Sbjct: 1 APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 56
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
+R + F + + V V+ +G+ + +G+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 57 KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 114
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 56/242 (23%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD 235
I DP GY+++T + RS +DG+ +VT +I +P G+ VD+ +++YW D
Sbjct: 345 AIDYDPVEGYIYWTD--DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 402
Query: 236 TYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295
T D I+ +GT RK + S+D E
Sbjct: 403 TGTDRIEVTRLNGTMRKILI-----------------------------------SEDLE 427
Query: 296 TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL 355
P AI L P +Y I K DG+ ++ ++ T L
Sbjct: 428 ------EPRAI----------VLDPMVGYMYWTDWGEIPKIERAALDGS-DRVVLVNTSL 470
Query: 356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYW 415
P+ + E IY+ + + IE G G+ V+++ I ++ G + + + +YW
Sbjct: 471 GWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTL--LGDYVYW 528
Query: 416 TD 417
TD
Sbjct: 529 TD 530
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIY 399
R T + I+ DL+ P I Y+Y+ + IER + G + V+++T +
Sbjct: 412 RLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLG 471
Query: 400 NVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
G+A+D+ +YW DA I V +D + R+VL +
Sbjct: 472 WPNGLALDYDEGKIYWGDAKTDKIEVMN-TDGTGRRVLVE 510
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 198 LERSLLDGTERFP-MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
++R+ + TE +V ++ P G+ D+ + +YW D+ + I+ N DG+ RK +
Sbjct: 56 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 113
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 29/220 (13%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
L P G+A D +++T R +E S LDG+ R K+++ +
Sbjct: 78 LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 119
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
L +PR IALDP+SG+M++T WG P +ER+ +DG+ RF ++ +I +P G
Sbjct: 120 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 170
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
+T+D+ + +YW D L+FI + N DGT+R+ + KG + + + +T+FE+ L+ T W
Sbjct: 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 229
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP 320
SI+ NK+ + I ++ P IH + +Q+QP+A P
Sbjct: 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 269
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI 380
+ LLYA + + T + E A + + L+ + +D+ IY+++++ I
Sbjct: 4 APLLLYANRRDLRLVDATNGK----ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59
Query: 381 ERRKMFGRGKEV--VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
+R + F + + V V+ +G+ + +G+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 60 KRTE-FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 117
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYN 400
DG+ + + +L +P I ++Y+ + IER M G + ++I++ IY
Sbjct: 109 DGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 167
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
G+ +D+ LYW DA + I+ + + D + R+ + KG
Sbjct: 168 PNGLTLDYEEQKLYWADAKLNFIHKSNL-DGTNRQAVVKG 206
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 194 TRPMLERSLLDGTERFP-MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK 252
+ ++R+ + TE +V ++ P G+ D+ + +YW D+ + I+ N DG+ RK
Sbjct: 55 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114
Query: 253 TI 254
+
Sbjct: 115 VL 116
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 29/220 (13%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
L P G+A D +++T R +E S LDG+ R K+++ +
Sbjct: 75 LLSPDGLACDWLGEKLYWTDSETNR--IEVSNLDGSLR------KVLFWQ---------- 116
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
L +PR IALDP+SG+M++T WG P +ER+ +DG+ RF ++ +I +P G
Sbjct: 117 --------ELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIINSEIYWPNG 167
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ 281
+T+D+ + +YW D L+FI + N DGT+R+ + KG + + + +T+FE+ L+ T W
Sbjct: 168 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLFEDILYWTDWSTH 226
Query: 282 SIIRVNKFNSDDYETI-ANFSRPFAIHIYHRQKQPDALKP 320
SI+ NK+ + I ++ P IH + +Q+QP+A P
Sbjct: 227 SILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNP 266
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEV--VIDTGIYNVEG 403
E A + + L+ + +D+ IY+++++ I+R + F + + V V+ +G+ + +G
Sbjct: 22 ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE-FNKTESVQNVVVSGLLSPDG 80
Query: 404 MAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 81 LACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 114
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYN 400
DG+ + + +L +P I ++Y+ + IER M G + ++I++ IY
Sbjct: 106 DGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 164
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
G+ +D+ LYW DA + I+ + + D + R+ + KG
Sbjct: 165 PNGLTLDYEEQKLYWADAKLNFIHKSNL-DGTNRQAVVKG 203
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 194 TRPMLERSLLDGTERFP-MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK 252
+ ++R+ + TE +V ++ P G+ D+ + +YW D+ + I+ N DG+ RK
Sbjct: 52 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 111
Query: 253 TI 254
+
Sbjct: 112 VL 113
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 147/333 (44%), Gaps = 57/333 (17%)
Query: 11 CVDADECLIDGSCDQTCTNTHLSY-TYTDEGFSFQ----GVKTHLYETIEAFWEECFGPM 65
C D +EC +G C Q CTN+ ++ + + G+ + K E + F
Sbjct: 41 CQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQ 100
Query: 66 DIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK--------------------- 104
+ E L + AI H+ + D+ L +
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160
Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
P G+A+D +++T G +R +E + LDG R K++ ++
Sbjct: 161 PGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHR------KVLLWQS------------ 200
Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
L KPR IAL P G +++T WG T P +E S +DG+ R + + +P G+T+
Sbjct: 201 ------LEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTI 253
Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
D+ + +YWVD I+R N DG+ RK I +G P + + ITVFE++L+ T W +SI
Sbjct: 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSI 311
Query: 284 IRVNKFNSDDYETIAN-FSRPFAIHIYHRQKQP 315
NKF + E I N P IH H Q+QP
Sbjct: 312 NSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQP 344
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
++ AL P LL+A + I + L + + T + + +L+ +D+H + E ++
Sbjct: 78 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYT-----LLLNNLENAIALDFHHRRELVF 131
Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
++++T I R + G E V+ TG+ + G+AVDW+ + LYWTD+G I VA + D
Sbjct: 132 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DG 190
Query: 432 SIRKVL 437
+ RKVL
Sbjct: 191 AHRKVL 196
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYN 400
DG + ++ L++P I H E IY+ + + IE M G G+ ++ DT ++
Sbjct: 189 DGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 247
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
G+ +D+ +YW DA I A + + V+ +G
Sbjct: 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 84/229 (36%), Gaps = 56/229 (24%)
Query: 200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR-KGF 258
R+ L+G+ +V+ + P G+ VD+ +YW D+ I+ N DG RK + +
Sbjct: 142 RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 201
Query: 259 PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDAL 318
+ E ++ T W N I + + IA+
Sbjct: 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------- 242
Query: 319 KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY 378
T L + G LT IDY + +Y+ + +
Sbjct: 243 ---THLFWPNG-------LT----------------------IDYAGRR--MYWVDAKHH 268
Query: 379 VIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427
VIER + G ++ VI G+ + A+ ++LYWTD +IN A
Sbjct: 269 VIERANLDGSHRKAVISQGLPHP--FAITVFEDSLYWTDWHTKSINSAN 315
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 15 DECLIDGSCDQTCTNTHLSY-TYTDEGFSFQ----GVKTHLYETIEAFWEECFGPMDIEE 69
+EC +G C Q CTN+ ++ + + G+ + K E + F +
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPH 61
Query: 70 WDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSK---------------------PRGI 108
E L + AI H+ + D+ L + P G+
Sbjct: 62 RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121
Query: 109 ALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAID 168
A+D +++T G +R +E + LDG R + +
Sbjct: 122 AVDWVHDKLYWTDSGTSR--IEVANLDGAHR------------------------KVLLW 155
Query: 169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
+L KPR IAL P G +++T WG T P +E S +DG+ R + + +P G+T+D+
Sbjct: 156 QSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 214
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
+ +YWVD I+R N DG+ RK I +G P + + ITVFE++L+ T W +SI N
Sbjct: 215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLP--HPFAITVFEDSLYWTDWHTKSINSAN 272
Query: 288 KFNSDDYETIAN-FSRPFAIHIYHRQKQP 315
KF + E I N P IH H Q+QP
Sbjct: 273 KFTGKNQEIIRNKLHFPMDIHTLHPQRQP 301
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 7/126 (5%)
Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
++ AL P LL+A + I + L + + T + + +L+ +D+H + E ++
Sbjct: 35 RRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYT-----LLLNNLENAIALDFHHRRELVF 88
Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
++++T I R + G E V+ TG+ + G+AVDW+ + LYWTD+G I VA + D
Sbjct: 89 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL-DG 147
Query: 432 SIRKVL 437
+ RKVL
Sbjct: 148 AHRKVL 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYN 400
DG + ++ L++P I H E IY+ + + IE M G G+ ++ DT ++
Sbjct: 146 DGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
G+ +D+ +YW DA I A + + V+ +G
Sbjct: 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 244
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 84/229 (36%), Gaps = 56/229 (24%)
Query: 200 RSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR-KGF 258
R+ L+G+ +V+ + P G+ VD+ +YW D+ I+ N DG RK + +
Sbjct: 99 RANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 158
Query: 259 PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDAL 318
+ E ++ T W N I + + IA+
Sbjct: 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------- 199
Query: 319 KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY 378
T L + G LT IDY + +Y+ + +
Sbjct: 200 ---THLFWPNG-------LT----------------------IDYAGRR--MYWVDAKHH 225
Query: 379 VIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427
VIER + G ++ VI G+ + A+ ++LYWTD +IN A
Sbjct: 226 VIERANLDGSHRKAVISQGLPHP--FAITVFEDSLYWTDWHTKSINSAN 272
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
N SKPR I +DP G+M++T WG T +++ L+G + + +VT I +P G+T+D +
Sbjct: 240 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 298
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
+YWVD+ L I I+ +G +RKTI R P + + VFE+ +F T N++I
Sbjct: 299 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 354
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
N+ D +A N P + ++H QP
Sbjct: 355 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 386
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
I +L+ +D IY+++L+ +I + + G + VI I +G+AVD
Sbjct: 148 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 207
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
W+ +N+YWTD+ +GT++VA RK L++
Sbjct: 208 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 238
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 46/265 (17%)
Query: 5 GPNKTQCVDADECLIDGSCD--QTC---TNTHLSYTYTDEGFSFQGVKTHLYETIEAFWE 59
GPNK +C + +D C+ + C ++ + T+E G +H+ ++ +E
Sbjct: 3 GPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 62
Query: 60 ECFGP--------MDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALD 111
C P E+ DE T +Q + Y C L+ A+
Sbjct: 63 -CLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVG 121
Query: 112 PTSGYMFFTKWGATRPM-LERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLN 170
+ Y+FFT R M L+RS + T P + + ++A+D
Sbjct: 122 SIA-YLFFTNRHEVRKMTLDRS--EYTSLIPNLRN------------------VVALDTE 160
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF-PMVTHKIVYPYGVTVDFPTK 229
++ R D + + T+ L+R+ G + +++ I P G+ VD+
Sbjct: 161 VASNRIYWSDLSQRMICSTQ-------LDRA--HGVSSYDTVISRDIQAPDGLAVDWIHS 211
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI 254
++YW D+ L + + G RKT+
Sbjct: 212 NIYWTDSVLGTVSVADTKGVKRKTL 236
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
N SKPR I +DP G+M++T WG T +++ L+G + + +VT I +P G+T+D +
Sbjct: 512 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
+YWVD+ L I I+ +G +RKTI R P + + VFE+ +F T N++I
Sbjct: 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 626
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
N+ D +A N P + ++H QP
Sbjct: 627 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 658
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
I +L+ +D IY+++L+ +I + + G + VI I +G+AVD
Sbjct: 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
W+ +N+YWTD+ +GT++VA RK L++
Sbjct: 480 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 510
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
+++ I P G+ VD+ ++YW D+ L + + G RKT+
Sbjct: 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 508
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
N SKPR I +DP G+M++T WG T +++ L+G + + +VT I +P G+T+D +
Sbjct: 200 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 258
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
+YWVD+ L I I+ +G +RKTI R P + + VFE+ +F T N++I
Sbjct: 259 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 314
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
N+ D +A N P + ++H QP
Sbjct: 315 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
I +L+ +D IY+++L+ +I + + G + VI I +G+AVD
Sbjct: 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
W+ +N+YWTD+ +GT++VA RK L++
Sbjct: 168 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 198
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
+++ I P G+ VD+ ++YW D+ L + + G RKT+
Sbjct: 153 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 196
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 3/146 (2%)
Query: 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV 231
SKPR I +DP G+M++T WG T +++ L+G + + +VT I +P G+T+D + +
Sbjct: 496 SKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554
Query: 232 YWVDTYLDFIDRINYDGTDRKTIRKGFP-VQNLYDITVFENNLFVTSWRNQSIIRVNKFN 290
YWVD+ L I I+ +G +RKTI + + + + + VFE+ +F T N++I N+
Sbjct: 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614
Query: 291 SDDYETIA-NFSRPFAIHIYHRQKQP 315
D +A N P + ++H+ QP
Sbjct: 615 GSDVNLLAENLLSPEDMVLFHQLTQP 640
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
I +L+ +D IY+++L+ +I + + G + VI I +G+AVD
Sbjct: 402 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
W+ +N+YWTD+ +GT++VA RK L++
Sbjct: 462 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 492
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
+++ I P G+ VD+ ++YW D+ L + + G RKT+
Sbjct: 447 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 490
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 11/152 (7%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTK 229
N SKPR I +DP G+M++T WG T +++ L+G + + +VT I +P G+T+D +
Sbjct: 118 NGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 176
Query: 230 HVYWVDTYLDFIDRINYDGTDRKTI-----RKGFPVQNLYDITVFENNLFVTSWRNQSII 284
+YWVD+ L I I+ +G +RKTI R P + + VFE+ +F T N++I
Sbjct: 177 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFEDKVFWTDIINEAIF 232
Query: 285 RVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
N+ D +A N P + ++H QP
Sbjct: 233 SANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 352 ITDLKRPSVIDYHEKEEYIYYAELTSYVI---ERRKMFGRGK-EVVIDTGIYNVEGMAVD 407
I +L+ +D IY+++L+ +I + + G + VI I +G+AVD
Sbjct: 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85
Query: 408 WMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
W+ +N+YWTD+ +GT++VA RK L++
Sbjct: 86 WIHSNIYWTDSVLGTVSVADTKGVK-RKTLFR 116
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
+++ I P G+ VD+ ++YW D+ L + + G RKT+
Sbjct: 71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
+H + + +L PR +ALDP G+M++T+WG +P ++R+ +DG+ER +V
Sbjct: 117 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 168
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
N+ + G+ +D +++T ++E S + G R +
Sbjct: 169 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 207
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
+ + +P+G+T ++YW D I+R N +TI +G + + DI VF +
Sbjct: 208 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 264
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
+ + W + + + + F H P+TFLL+++ K
Sbjct: 265 S-RQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 322
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
AI + + ++ + I+PI L+ IDY ++ +Y+ + +I + + G
Sbjct: 323 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 380
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
V+ + + N+E +++D + +YWT INV ++ S+ VL
Sbjct: 381 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 432
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 104 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHC 163
+PR I ++P GYM+FT P +ER+ LDGTER E ++F
Sbjct: 438 RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTER-----------EVLFFS------- 479
Query: 164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
LSKP +ALD G +F+ R +E S L G R + I+ P G+T
Sbjct: 480 ------GLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT 531
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI-TVFENNL 273
V +YW+D I++I+ G + +T + Q L DI V E NL
Sbjct: 532 V--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSDIHAVKELNL 579
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
P FLL+++ A I+ ++ + + +P+T +K S +D+ + IY+ +++
Sbjct: 10 PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 65
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
I R M G E V++ G+ EGMAVDW+ NLYW D G I V+K+ D R+VL
Sbjct: 66 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 122
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI------------- 147
+L R I DP +++ + + M+ ++ DG++ F +V +
Sbjct: 343 SLRNVRAIDYDPLDKQLYWID--SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 400
Query: 148 --VYPEAIYFCTHYM----------EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATR 195
+Y IY+ + + +PR I ++P GYM+FT
Sbjct: 401 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERS 460
Query: 196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR 255
P +ER+ LDGTER + + P + +D ++W D+ L I+ + G +R +
Sbjct: 461 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 520
Query: 256 KGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
+Q + +TVFEN L+ + Q I +++
Sbjct: 521 DSNILQPV-GLTVFENWLYWIDKQQQMIEKID 551
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 62/235 (26%)
Query: 165 IAIDL-NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
+AI L + + + D T +++T + + R+ ++G+ +V + YP G+
Sbjct: 34 VAIPLTGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFGLDYPEGMA 91
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
VD+ K++YW DT + I+ DG R+ V W+
Sbjct: 92 VDWLGKNLYWADTGTNRIEVSKLDGQHRQ----------------------VLVWK---- 125
Query: 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAK---GKPAIIKGLTFK 340
+ P A+ AL P+ +Y GKP I +
Sbjct: 126 ---------------DLDSPRAL----------ALDPAEGFMYWTEWGGKPKIDRAAM-- 158
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID 395
DG+ ++P IDY ++ +Y+ +L + +IE M G +EV+ D
Sbjct: 159 -DGSERTTLVPNVGRANGLTIDYAKRR--LYWTDLDTNLIESSNMLGLNREVIAD 210
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 357 RPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLY 414
RP I + ++ Y+Y+ L S IER + G +EV+ +G+ +A+D L+
Sbjct: 438 RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLF 497
Query: 415 WTDAGIGTINVAKIS 429
W D+ + I + +S
Sbjct: 498 WADSDLRRIESSDLS 512
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
+H + + +L PR +ALDP G+M++T+WG +P ++R+ +DG+ER +V
Sbjct: 110 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 161
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
N+ + G+ +D +++T ++E S + G R +
Sbjct: 162 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 200
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
+ + +P+G+T ++YW D I+R N +TI +G + + DI VF +
Sbjct: 201 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 257
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
+ + W + + + + F H P+TFLL+++ K
Sbjct: 258 SR-QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 315
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
AI + + ++ + I+PI L+ IDY ++ +Y+ + +I + + G
Sbjct: 316 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 373
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
V+ + + N+E +++D + +YWT INV ++ S+ VL
Sbjct: 374 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 425
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 104 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHC 163
+PR I ++P GYM+FT P +ER+ LDGTER E ++F
Sbjct: 431 RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTER-----------EVLFFS------- 472
Query: 164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
LSKP +ALD G +F+ R +E S L G R + I+ P G+T
Sbjct: 473 ------GLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT 524
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI-TVFENNL 273
V +YW+D I++I+ G + +T + Q L DI V E NL
Sbjct: 525 V--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSDIHAVKELNL 572
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
P FLL+++ A I+ ++ + + +P+T +K S +D+ + IY+ +++
Sbjct: 3 PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 58
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
I R M G E V++ G+ EGMAVDW+ NLYW D G I V+K+ D R+VL
Sbjct: 59 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 115
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI------------- 147
+L R I DP +++ + + M+ ++ DG++ F +V +
Sbjct: 336 SLRNVRAIDYDPLDKQLYWID--SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 393
Query: 148 --VYPEAIYFCTHYM----------EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATR 195
+Y IY+ + + +PR I ++P GYM+FT
Sbjct: 394 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERS 453
Query: 196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR 255
P +ER+ LDGTER + + P + +D ++W D+ L I+ + G +R +
Sbjct: 454 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 513
Query: 256 KGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
+Q + +TVFEN L+ + Q I +++
Sbjct: 514 DSNILQPV-GLTVFENWLYWIDKQQQMIEKID 544
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 105/277 (37%), Gaps = 65/277 (23%)
Query: 165 IAIDL-NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
+AI L + + + D T +++T + + R+ ++G+ +V + YP G+
Sbjct: 27 VAIPLTGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFGLDYPEGMA 84
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
VD+ K++YW DT + I+ DG R+ V W+
Sbjct: 85 VDWLGKNLYWADTGTNRIEVSKLDGQHRQ----------------------VLVWK---- 118
Query: 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAK---GKPAIIKGLTFK 340
+ P A+ AL P+ +Y GKP I +
Sbjct: 119 ---------------DLDSPRAL----------ALDPAEGFMYWTEWGGKPKIDRAAM-- 151
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN 400
DG+ ++P IDY ++ +Y+ +L + +IE M G +EV+ D +
Sbjct: 152 -DGSERTTLVPNVGRANGLTIDYAKRR--LYWTDLDTNLIESSNMLGLNREVIADDLPH- 207
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
+ + +YWTD +I A + R ++
Sbjct: 208 --PFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII 242
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 357 RPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLY 414
RP I + ++ Y+Y+ L S IER + G +EV+ +G+ +A+D L+
Sbjct: 431 RPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLF 490
Query: 415 WTDAGIGTINVAKIS 429
W D+ + I + +S
Sbjct: 491 WADSDLRRIESSDLS 505
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 42/352 (11%)
Query: 92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPE 151
+H + + +L PR +ALDP G+M++T+WG +P ++R+ +DG+ER +V
Sbjct: 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG-KPKIDRAAMDGSERTTLVP------- 163
Query: 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211
N+ + G+ +D +++T ++E S + G R +
Sbjct: 164 ------------------NVGRANGLTIDYAKRRLYWTDLDTN--LIESSNMLGLNR-EV 202
Query: 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN 271
+ + +P+G+T ++YW D I+R N +TI +G + + DI VF +
Sbjct: 203 IADDLPHPFGLTQ--YQDYIYWTDWSRRSIERANKTSGQNRTIIQGH-LDYVMDILVFHS 259
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP 331
+ + W + + + + F H P+TFLL+++ K
Sbjct: 260 SR-QSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KS 317
Query: 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
AI + + ++ + I+PI L+ IDY ++ +Y+ + +I + + G
Sbjct: 318 AINRMVIDEQ--QSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
Query: 392 VVIDTGI--YNVE----GMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
V+ + + N+E +++D + +YWT INV ++ S+ VL
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVL 427
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 30/171 (17%)
Query: 104 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHC 163
+PR + ++P GYM+FT P +ER+ LDGTER E ++F
Sbjct: 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-----------EVLFFS------- 474
Query: 164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
LSKP +ALD G +F+ R +E S L G R + I+ P G+T
Sbjct: 475 ------GLSKPIALALDSRLGKLFWADSDLRR--IESSDLSGANRIVLEDSNILQPVGLT 526
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI-TVFENNL 273
V +YW+D I++I+ G + +T + Q L DI V E NL
Sbjct: 527 V--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ-LSDIHAVKELNL 574
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
P FLL+++ A I+ ++ + + +P+T +K S +D+ + IY+ +++
Sbjct: 5 PEAFLLFSR--RADIRRISLETNNNN--VAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
I R M G E V++ G+ EGMAVDW+ NLYW D G I V+K+ D R+VL
Sbjct: 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVL 117
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 28/212 (13%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI------------- 147
+L R I DP +++ + + M+ ++ DG++ F +V +
Sbjct: 338 SLRNVRAIDYDPLDKQLYWID--SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 395
Query: 148 --VYPEAIYFCTHYM----------EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATR 195
+Y IY+ + + +PR + ++P GYM+FT
Sbjct: 396 IDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS 455
Query: 196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR 255
P +ER+ LDGTER + + P + +D ++W D+ L I+ + G +R +
Sbjct: 456 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 515
Query: 256 KGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
+Q + +TVFEN L+ + Q I +++
Sbjct: 516 DSNILQPV-GLTVFENWLYWIDKQQQMIEKID 546
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 62/235 (26%)
Query: 165 IAIDL-NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVT 223
+AI L + + + D T +++T + + R+ ++G+ +V + YP G+
Sbjct: 29 VAIPLTGVKEASALDFDVTDNRIYWTD--ISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSI 283
VD+ K++YW DT + I+ DG R+ V W+
Sbjct: 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQ----------------------VLVWK---- 120
Query: 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAK---GKPAIIKGLTFK 340
+ P A+ AL P+ +Y GKP I +
Sbjct: 121 ---------------DLDSPRAL----------ALDPAEGFMYWTEWGGKPKIDRAAM-- 153
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID 395
DG+ ++P IDY ++ +Y+ +L + +IE M G +EV+ D
Sbjct: 154 -DGSERTTLVPNVGRANGLTIDYAKRR--LYWTDLDTNLIESSNMLGLNREVIAD 205
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 357 RPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLY 414
RP + + ++ Y+Y+ L S IER + G +EV+ +G+ +A+D L+
Sbjct: 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLF 492
Query: 415 WTDAGIGTINVAKIS 429
W D+ + I + +S
Sbjct: 493 WADSDLRRIESSDLS 507
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 88/199 (44%), Gaps = 28/199 (14%)
Query: 98 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCT 157
I +L P GIALD +F+T R +E + +DGT+R
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQR------------------ 113
Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
+ D L PRGI DP G +++T W P +E S +DGT R + +
Sbjct: 114 ------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTS 277
P G+T D + + WVD + +N R+ + +G +Q + +T + NL+ T
Sbjct: 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTD 225
Query: 278 WRNQSIIRVNKFNSDDYET 296
W+ S+I ++ S + +T
Sbjct: 226 WKTNSVIAMDLAISKEMDT 244
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 17/145 (11%)
Query: 96 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYF 155
+ D L PRGI DP G +++T W P +E S +DGT R + + P + F
Sbjct: 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTF 174
Query: 156 CTHYMEHCMI------AIDLNLSKP------RGI----ALDPTSGYMFFTKWGATRPMLE 199
+ C + A LN ++P G+ A+ +++T W T ++
Sbjct: 175 DAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDW-KTNSVIA 233
Query: 200 RSLLDGTERFPMVTHKIVYPYGVTV 224
L E HK YG+T+
Sbjct: 234 MDLAISKEMDTFHPHKQTRLYGITI 258
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 138 ERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 197
ER P+ + + EA F H +I G+A D +++T + P
Sbjct: 13 ERLPLERNTMKKTEAKAFL-HIPAKVII----------GLAFDCVDKVVYWTD--ISEPS 59
Query: 198 LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG 257
+ R+ L G E ++ + P G+ +D + ++W D+ LD I+ DGT R+ +
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 258 FPVQNLYDIT-VFENNLFVTSW-RNQSIIRVNKFNSDDYETIAN 299
V +T NL+ T W R+ I + + + +A
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
++ +Y+ +++ I R + G +I + + EG+A+D + ++WTD+ + I VA
Sbjct: 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106
Query: 427 KISDFSIRKVLY 438
K+ D + R+VL+
Sbjct: 107 KM-DGTQRRVLF 117
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%)
Query: 354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNL 413
DL P I I++ + IE KM G + V+ DTG+ N G+ D + NL
Sbjct: 77 DLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136
Query: 414 YWTD 417
YWTD
Sbjct: 137 YWTD 140
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 39/150 (26%)
Query: 69 EWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 128
E+D G+S TF+ E F +E+ + AI L S GIA G + + AT P+
Sbjct: 7 EYDRGVS--TFSPEGRLF---QVEYSLEAIKLG-STAIGIA--TKEGVVLGVEKRATSPL 58
Query: 129 LE-------------------------RSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHC 163
LE RS+++ R VTH + Y E I + C
Sbjct: 59 LESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA-RTAAVTHNLYYDEDINVESLTQSVC 117
Query: 164 MIAIDLNLSKPRGIAL-----DPTSGYMFF 188
+A +S+P G+AL D GY F
Sbjct: 118 DLAAAAAMSRPFGVALLIAGHDADDGYQLF 147
>pdb|3R3L|A Chain A, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|B Chain B, Structure Of Np Protein From Lassa Av Strain
pdb|3R3L|C Chain C, Structure Of Np Protein From Lassa Av Strain
Length = 582
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 12/118 (10%)
Query: 238 LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF-VTSWRNQSIIRVNKFNSDDYET 296
LDF + N RK R ++ L D+ NNL + S + +S++RV +SDD T
Sbjct: 42 LDFSEVSNVQRLMRKQRRDDSDLKRLRDLNQAVNNLVELKSTQQKSVLRVGTLSSDDLLT 101
Query: 297 IA-----------NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG 343
+A RP + +Y L LL G +G RDG
Sbjct: 102 LAADLEKLKSKVTRTERPLSSGVYMGNLSSQQLDQRRALLNLIGMTNGSQGSQAGRDG 159
>pdb|2R1M|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Phosphate From Crystal Soaking With Diethyl 4-
Methoxyphenyl Phosphate (450h)- 2.5 A
pdb|2R1N|A Chain A, Opda From Agrobacterium Radiobacter With Bound Slow
Substrate Diethyl 4-Methoxyphenyl Phosphate (20h)- 1.7 A
Length = 328
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ D ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 228 GLEGDASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 277
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 278 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 326
>pdb|2R1K|A Chain A, Opda From Agrobacterium Radiobacter With Bound Diethyl
Phosphate From Crystal Soaking With The Compound- 1.9 A
pdb|2R1L|A Chain A, Opda From Agrobacterium Radiobacter With Bound Diethyl
Thiophosphate From Crystal Soaking With The Compound-
1.95 A
Length = 329
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ D ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 229 GLEGDASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 278
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 279 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 327
>pdb|3A3W|A Chain A, Structure Of Opda Mutant
(G60aA80VS92AR118QK185RQ206PD208GI260TG273S) WITH
Diethyl 4-Methoxyphenyl Phosphate Bound In The Active
Site
pdb|3A3X|A Chain A, Structure Of Opda Mutant
(G60aA80VR118QK185RQ206PD208GI260TG273S)
Length = 329
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 164 MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGV 222
++ +D G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ +
Sbjct: 217 LVGLDRMPYSATGLEGNASALALFSTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS- 275
Query: 223 TVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFV 275
+V +D +DRIN DG +R KG P + L +TV F+
Sbjct: 276 ---------SYVTNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFL 326
Query: 276 T 276
+
Sbjct: 327 S 327
>pdb|3C86|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Thiophosphate From Crystal Soaking With
Tetraethyl Dithiopyrophosphate- 1.8 A
Length = 328
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 228 GLEGNASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 277
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 278 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 326
>pdb|3SO7|A Chain A, Organophoshatedegrading Enzyme (Opda)-Phosphate Complex
Length = 329
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 229 GLEGNASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 278
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 279 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 327
>pdb|2D2G|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Dimethylthiophosphate
pdb|2D2H|A Chain A, Opda From Agrobacterium Radiobacter With Bound Inhibitor
Trimethyl Phosphate At 1.8 A Resolution
pdb|2D2J|A Chain A, Opda From Agrobacterium Radiobacter Without
InhibitorPRODUCT PRESENT AT 1.75 A RESOLUTION
Length = 329
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 229 GLEGNASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 278
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 279 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 327
>pdb|3OOD|A Chain A, Structure Of Opda Y257f Mutant Soaked With Diethyl
4-Methoxyphenyl Phosphate For 20 Hours.
pdb|3OQE|A Chain A, Structure Of Opda Mutant Y257f
Length = 329
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 229 GLEGNASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 278
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 279 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 327
>pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric
Fact Complex (Spt16p-Pob3p)
Length = 191
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 279 RNQSIIRVNKFNSDDYETIAN-FSRPFAIHIYHRQ 312
+NQ +I+++ F+ DDY I N F R F I + R+
Sbjct: 92 KNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQRE 126
>pdb|2R1P|A Chain A, Opda From Agrobacterium Radiobacter With Bound Product
Diethyl Thiophosphate From Co-Crystallisation With
Tetraethyl Dithiopyrophosphate- 1.8 A
Length = 328
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ + ++ +F T+ TR +L ++L+D G + +V+H ++ + +V
Sbjct: 228 GLEGNASALALFGTRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 277
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 278 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 326
>pdb|3A4J|A Chain A, Arpte (K185rD208GN265DT274N)
Length = 329
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 18/109 (16%)
Query: 176 GIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
G+ D ++ +F + TR +L ++L+D G + +V+H ++ + +V
Sbjct: 229 GLEGDASALALFGNRSWQTRALLIKALIDRGYKDRILVSHDWLFGFS----------SYV 278
Query: 235 DTYLDFIDRINYDGTDRKTIR-------KGFPVQNLYDITVFENNLFVT 276
+D +DRIN DG +R KG P + L +TV F++
Sbjct: 279 TNIMDVMDRINPDGMAFVPLRVIPFLREKGVPPETLAGVTVANPARFLS 327
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 183 SGYMFFTKWGATRPMLERSL--LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF 240
SG +W MLE L L E+ + KI YP+ +++ + + YW
Sbjct: 123 SGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASV---- 178
Query: 241 IDRINYDGTDRKTIRKGFPVQNLYD--ITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA 298
+N + K + V+ L D +FEN + W N S + K + D IA
Sbjct: 179 ---LNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSRVEFKKDDMADSALIA 235
Query: 299 N 299
+
Sbjct: 236 S 236
>pdb|3PQI|A Chain A, Crystal Structure Of The Bacteriophage Phi92
Membrane-Piercing Protein Gp138
Length = 247
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 398 IYNVEGMAVDWMANNLYWTDAGIGTI 423
+YN +GM +D N++ TDAG G +
Sbjct: 162 VYNTQGMKIDMTPNSIVLTDAGGGKL 187
>pdb|3PQH|A Chain A, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
pdb|3PQH|B Chain B, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
Length = 127
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 395 DTGIYNVEGMAVDWMANNLYWTDAGIGTINV 425
+ +YN +GM +D N++ TDAG G + +
Sbjct: 39 NISVYNTQGMKIDMTPNSIVLTDAGGGKLTL 69
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSW 278
D Y+D + DG + K +G+ V+ L +++ FE +++ W
Sbjct: 7 DVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWW 50
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 384 KMFGRGKEVVIDTGIYNVEGMAVDW--MANNLYWTDAGIGTINVAKISDFSIRKV 436
+ +G + +ID + NV+G +D M +L+W G G N I+ + I+ V
Sbjct: 168 RNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLV 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,337,598
Number of Sequences: 62578
Number of extensions: 640924
Number of successful extensions: 1953
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 140
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)