Query psy14258
Match_columns 440
No_of_seqs 264 out of 2854
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:25:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 2.1E-46 4.5E-51 366.5 23.3 246 46-310 990-1249(1289)
2 KOG1215|consensus 100.0 3E-33 6.4E-38 302.3 34.9 396 15-430 366-808 (877)
3 KOG1214|consensus 99.9 3.8E-25 8.3E-30 217.9 19.6 233 143-433 989-1230(1289)
4 PLN02919 haloacid dehalogenase 99.9 1.1E-19 2.4E-24 197.5 33.8 250 168-431 564-890 (1057)
5 PLN02919 haloacid dehalogenase 99.9 2E-19 4.4E-24 195.4 33.4 277 83-373 570-919 (1057)
6 PF08450 SGL: SMP-30/Gluconola 99.8 3.8E-17 8.2E-22 151.3 27.4 210 83-309 2-233 (246)
7 PF08450 SGL: SMP-30/Gluconola 99.8 3.6E-16 7.8E-21 144.7 28.2 226 174-418 2-245 (246)
8 KOG1215|consensus 99.7 1.5E-15 3.2E-20 164.9 24.2 278 134-439 198-519 (877)
9 PRK11028 6-phosphogluconolacto 99.7 7E-13 1.5E-17 128.3 34.6 272 146-430 3-305 (330)
10 PF10282 Lactonase: Lactonase, 99.7 2E-12 4.4E-17 125.6 36.6 252 170-430 35-323 (345)
11 PRK11028 6-phosphogluconolacto 99.6 5.5E-11 1.2E-15 115.1 35.8 292 93-406 2-327 (330)
12 PF10282 Lactonase: Lactonase, 99.5 2.3E-10 5E-15 111.2 37.9 244 131-387 34-323 (345)
13 COG3386 Gluconolactonase [Carb 99.5 1.1E-11 2.3E-16 116.8 23.1 220 166-437 19-251 (307)
14 COG2706 3-carboxymuconate cycl 99.4 1.7E-09 3.8E-14 99.8 32.7 275 151-434 16-326 (346)
15 TIGR02604 Piru_Ver_Nterm putat 99.4 5.6E-11 1.2E-15 116.4 24.6 242 132-386 12-366 (367)
16 COG3386 Gluconolactonase [Carb 99.4 1.4E-10 3.1E-15 109.2 24.5 212 83-309 27-263 (307)
17 COG3391 Uncharacterized conser 99.4 1.5E-09 3.2E-14 106.8 31.6 241 172-430 31-284 (381)
18 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.9E-08 4.1E-13 95.2 37.1 275 146-437 2-287 (300)
19 PF07995 GSDH: Glucose / Sorbo 99.4 2.2E-10 4.7E-15 110.4 23.3 273 83-382 4-331 (331)
20 KOG4659|consensus 99.3 4.3E-10 9.4E-15 117.3 25.3 193 46-250 375-625 (1899)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 2.5E-08 5.3E-13 94.4 35.8 282 94-407 2-299 (300)
22 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.4E-08 5.2E-13 95.5 34.8 261 151-430 27-331 (352)
23 TIGR02604 Piru_Ver_Nterm putat 99.3 2.2E-09 4.8E-14 105.1 27.5 232 170-417 12-338 (367)
24 COG3391 Uncharacterized conser 99.3 7.2E-09 1.6E-13 101.9 28.7 267 133-416 30-316 (381)
25 KOG4659|consensus 99.2 2.7E-09 5.9E-14 111.5 22.7 273 143-427 325-689 (1899)
26 COG2706 3-carboxymuconate cycl 99.1 1.5E-06 3.2E-11 80.7 32.7 277 93-387 3-322 (346)
27 PF00058 Ldl_recept_b: Low-den 99.0 1E-09 2.2E-14 70.9 7.3 41 368-408 1-42 (42)
28 COG4257 Vgb Streptogramin lyas 99.0 2.6E-07 5.6E-12 82.6 24.4 278 131-428 59-346 (353)
29 PF00058 Ldl_recept_b: Low-den 99.0 7.1E-10 1.5E-14 71.6 6.2 42 184-226 1-42 (42)
30 PF07995 GSDH: Glucose / Sorbo 99.0 2.8E-07 6.1E-12 88.9 27.1 261 133-425 1-331 (331)
31 PF02239 Cytochrom_D1: Cytochr 99.0 4.2E-06 9E-11 81.8 34.7 316 93-432 6-350 (369)
32 PF02239 Cytochrom_D1: Cytochr 99.0 3.2E-06 6.9E-11 82.6 32.0 324 48-405 7-364 (369)
33 PF06977 SdiA-regulated: SdiA- 99.0 2.3E-07 5E-12 84.7 21.4 190 82-285 23-246 (248)
34 PF06977 SdiA-regulated: SdiA- 98.9 9.2E-07 2E-11 80.8 25.1 200 217-427 22-248 (248)
35 TIGR03606 non_repeat_PQQ dehyd 98.9 3.1E-06 6.8E-11 83.6 28.0 278 78-380 29-429 (454)
36 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-05 2.3E-10 77.5 28.5 234 184-435 13-293 (352)
37 KOG1520|consensus 98.7 1.5E-06 3.2E-11 82.1 17.7 173 92-271 75-275 (376)
38 COG4257 Vgb Streptogramin lyas 98.7 7.9E-06 1.7E-10 73.3 21.0 237 172-430 62-306 (353)
39 KOG1520|consensus 98.7 1.6E-06 3.5E-11 81.8 16.9 161 216-416 114-281 (376)
40 KOG4499|consensus 98.6 9.9E-06 2.1E-10 71.0 20.1 197 84-295 18-247 (310)
41 PRK04043 tolB translocation pr 98.6 0.00011 2.3E-09 73.3 28.8 237 140-437 151-407 (419)
42 smart00135 LY Low-density lipo 98.6 1.7E-07 3.7E-12 61.0 5.5 39 392-430 2-40 (43)
43 PRK04792 tolB translocation pr 98.5 0.00015 3.3E-09 73.0 27.6 235 143-437 182-432 (448)
44 TIGR03606 non_repeat_PQQ dehyd 98.5 0.00057 1.2E-08 67.8 30.7 110 165-277 23-163 (454)
45 smart00135 LY Low-density lipo 98.4 5.3E-07 1.1E-11 58.6 5.6 42 165-208 2-43 (43)
46 PRK02889 tolB translocation pr 98.4 0.00033 7E-09 70.3 28.2 236 142-437 162-410 (427)
47 PRK00178 tolB translocation pr 98.4 0.00037 8.1E-09 70.0 28.1 239 139-437 158-413 (430)
48 COG4946 Uncharacterized protei 98.4 0.0016 3.4E-08 62.9 30.0 304 92-430 106-432 (668)
49 PF05096 Glu_cyclase_2: Glutam 98.4 0.00083 1.8E-08 61.3 26.7 195 217-429 45-261 (264)
50 COG2133 Glucose/sorbosone dehy 98.4 0.00017 3.7E-09 69.9 23.5 237 131-387 128-398 (399)
51 COG3204 Uncharacterized protei 98.4 5.1E-05 1.1E-09 69.1 18.5 185 83-279 88-303 (316)
52 PRK05137 tolB translocation pr 98.4 0.00046 1E-08 69.4 27.6 219 196-433 182-416 (435)
53 PRK04922 tolB translocation pr 98.4 0.00042 9.1E-09 69.7 26.7 226 152-437 185-418 (433)
54 PRK05137 tolB translocation pr 98.3 0.0013 2.9E-08 66.1 28.4 226 152-393 183-419 (435)
55 COG3204 Uncharacterized protei 98.3 0.00025 5.4E-09 64.7 20.3 200 219-428 88-311 (316)
56 PF03022 MRJP: Major royal jel 98.3 0.00051 1.1E-08 64.7 23.5 198 219-418 3-254 (287)
57 PF03088 Str_synth: Strictosid 98.2 9.5E-06 2.1E-10 61.3 8.7 73 176-249 2-89 (89)
58 PRK03629 tolB translocation pr 98.2 0.0019 4.1E-08 64.8 28.0 235 183-437 164-413 (429)
59 PRK03629 tolB translocation pr 98.2 0.0021 4.5E-08 64.5 28.1 234 142-394 162-414 (429)
60 TIGR02800 propeller_TolB tol-p 98.2 0.0024 5.2E-08 63.7 27.8 222 152-431 171-399 (417)
61 cd00200 WD40 WD40 domain, foun 98.2 0.0055 1.2E-07 56.2 33.4 269 136-426 12-288 (289)
62 PRK04792 tolB translocation pr 98.2 0.00081 1.8E-08 67.8 24.1 218 62-295 200-430 (448)
63 KOG4499|consensus 98.1 0.00039 8.5E-09 61.2 17.4 77 353-430 155-242 (310)
64 PF03088 Str_synth: Strictosid 98.1 2.6E-05 5.7E-10 58.9 8.6 70 360-430 2-88 (89)
65 PRK04043 tolB translocation pr 98.1 0.0035 7.7E-08 62.5 25.8 210 62-289 171-400 (419)
66 PRK04922 tolB translocation pr 98.0 0.0019 4E-08 65.0 23.7 212 62-289 186-411 (433)
67 PRK00178 tolB translocation pr 98.0 0.0045 9.7E-08 62.2 25.2 211 62-288 181-405 (430)
68 PF05096 Glu_cyclase_2: Glutam 98.0 0.0048 1E-07 56.4 22.5 194 144-386 55-261 (264)
69 cd00200 WD40 WD40 domain, foun 97.9 0.015 3.3E-07 53.2 30.4 236 172-430 10-250 (289)
70 TIGR02800 propeller_TolB tol-p 97.9 0.008 1.7E-07 60.0 25.6 202 62-279 172-385 (417)
71 PRK02889 tolB translocation pr 97.9 0.0077 1.7E-07 60.4 24.9 216 62-294 178-407 (427)
72 TIGR03118 PEPCTERM_chp_1 conse 97.8 0.013 2.7E-07 54.2 22.3 214 167-430 18-281 (336)
73 PRK01742 tolB translocation pr 97.8 0.021 4.5E-07 57.4 26.4 110 143-254 168-287 (429)
74 PF03022 MRJP: Major royal jel 97.8 0.012 2.7E-07 55.4 23.1 187 83-277 3-253 (287)
75 PRK01029 tolB translocation pr 97.7 0.033 7.2E-07 55.8 25.2 221 61-296 166-410 (428)
76 PRK01029 tolB translocation pr 97.7 0.083 1.8E-06 53.0 27.9 225 152-434 166-408 (428)
77 PF14670 FXa_inhibition: Coagu 97.6 2.2E-05 4.7E-10 48.3 1.1 27 19-45 4-31 (36)
78 PF02333 Phytase: Phytase; In 97.6 0.028 6.1E-07 54.4 22.5 125 299-430 154-291 (381)
79 PF01436 NHL: NHL repeat; Int 97.6 0.00021 4.5E-09 41.5 4.9 28 398-426 1-28 (28)
80 COG2133 Glucose/sorbosone dehy 97.4 0.0046 1E-07 60.1 13.9 154 134-289 176-397 (399)
81 PRK02888 nitrous-oxide reducta 97.4 0.0091 2E-07 61.0 16.4 156 268-430 139-352 (635)
82 TIGR03118 PEPCTERM_chp_1 conse 97.3 0.079 1.7E-06 49.1 20.6 208 78-298 22-288 (336)
83 TIGR03032 conserved hypothetic 97.3 0.16 3.4E-06 47.5 22.6 116 151-277 28-169 (335)
84 PF02333 Phytase: Phytase; In 97.3 0.12 2.6E-06 50.1 22.2 194 46-250 67-293 (381)
85 PRK01742 tolB translocation pr 97.1 0.2 4.2E-06 50.4 23.2 196 62-278 186-391 (429)
86 COG3823 Glutamine cyclotransfe 97.1 0.13 2.8E-06 45.0 18.3 193 219-429 48-259 (262)
87 PF01436 NHL: NHL repeat; Int 97.1 0.002 4.3E-08 37.3 4.9 27 216-243 1-27 (28)
88 PF07645 EGF_CA: Calcium-bindi 97.0 0.00051 1.1E-08 44.2 2.2 32 13-44 1-36 (42)
89 COG5276 Uncharacterized conser 96.9 0.34 7.4E-06 44.7 26.8 218 85-334 89-323 (370)
90 PRK02888 nitrous-oxide reducta 96.8 0.22 4.7E-06 51.2 19.8 182 89-292 138-354 (635)
91 COG4946 Uncharacterized protei 96.6 0.83 1.8E-05 44.8 31.8 255 151-430 206-478 (668)
92 COG3823 Glutamine cyclotransfe 96.5 0.54 1.2E-05 41.3 17.5 191 144-387 55-260 (262)
93 TIGR03032 conserved hypothetic 96.5 0.79 1.7E-05 43.0 23.9 254 46-316 17-320 (335)
94 PF06433 Me-amine-dh_H: Methyl 96.2 1.2 2.7E-05 42.4 27.4 258 151-429 17-320 (342)
95 PF06433 Me-amine-dh_H: Methyl 95.7 2 4.3E-05 41.0 25.7 280 61-393 18-338 (342)
96 KOG0292|consensus 95.7 3.7 8.1E-05 43.6 25.3 303 81-430 10-322 (1202)
97 PF01731 Arylesterase: Arylest 95.6 0.048 1E-06 41.0 6.4 37 393-429 48-84 (86)
98 KOG0318|consensus 94.7 5.2 0.00011 40.0 38.2 194 215-430 319-518 (603)
99 PF01731 Arylesterase: Arylest 94.6 0.1 2.2E-06 39.3 5.6 39 348-386 46-84 (86)
100 TIGR02276 beta_rpt_yvtn 40-res 94.5 0.21 4.5E-06 31.5 6.3 42 365-407 1-42 (42)
101 KOG1274|consensus 94.3 8.9 0.00019 40.9 20.4 192 220-430 17-219 (933)
102 PF12662 cEGF: Complement Clr- 94.1 0.025 5.4E-07 31.2 1.0 16 1-16 8-24 (24)
103 PF05694 SBP56: 56kDa selenium 93.8 2.3 5E-05 41.9 14.3 136 268-418 219-393 (461)
104 PF02897 Peptidase_S9_N: Proly 93.7 8.1 0.00018 38.4 25.5 238 139-393 130-411 (414)
105 COG0823 TolB Periplasmic compo 93.6 8.7 0.00019 38.4 20.0 132 139-273 244-384 (425)
106 PF13360 PQQ_2: PQQ-like domai 93.5 5.5 0.00012 35.9 26.6 176 227-430 35-231 (238)
107 COG5276 Uncharacterized conser 93.5 6.5 0.00014 36.6 26.3 219 143-383 95-326 (370)
108 KOG0285|consensus 93.4 7.4 0.00016 37.1 24.6 276 129-430 147-440 (460)
109 TIGR03300 assembly_YfgL outer 93.3 8.7 0.00019 37.6 33.0 100 267-386 238-338 (377)
110 KOG0285|consensus 93.1 8.2 0.00018 36.8 20.8 239 166-428 146-388 (460)
111 PF02191 OLF: Olfactomedin-lik 93.0 7.2 0.00016 35.9 21.3 190 183-385 30-248 (250)
112 PTZ00421 coronin; Provisional 93.0 12 0.00026 38.3 32.1 207 170-388 74-292 (493)
113 smart00179 EGF_CA Calcium-bind 92.9 0.087 1.9E-06 32.7 2.2 30 13-42 1-33 (39)
114 KOG0276|consensus 92.9 13 0.00027 38.2 26.4 98 145-245 67-169 (794)
115 PF13449 Phytase-like: Esteras 92.1 1.1 2.5E-05 43.1 9.8 60 357-417 86-165 (326)
116 KOG4260|consensus 91.8 0.08 1.7E-06 47.7 1.3 39 7-45 229-271 (350)
117 TIGR02276 beta_rpt_yvtn 40-res 91.3 0.84 1.8E-05 28.7 5.5 39 270-308 3-41 (42)
118 PF05787 DUF839: Bacterial pro 91.3 0.8 1.7E-05 47.0 8.1 65 354-419 348-455 (524)
119 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.3 17 0.00037 37.5 17.9 48 85-150 238-286 (527)
120 PRK11138 outer membrane biogen 91.2 17 0.00036 36.0 32.7 136 267-428 253-393 (394)
121 KOG0318|consensus 91.1 18 0.0004 36.3 37.0 254 151-430 300-561 (603)
122 COG0823 TolB Periplasmic compo 90.9 19 0.0004 36.1 22.1 134 139-276 153-299 (425)
123 PF05787 DUF839: Bacterial pro 90.9 2.7 5.8E-05 43.2 11.4 62 131-193 347-456 (524)
124 PRK11138 outer membrane biogen 90.5 19 0.00042 35.5 28.4 61 228-293 256-316 (394)
125 KOG0268|consensus 90.2 13 0.00028 35.5 14.1 234 152-411 90-328 (433)
126 PF13360 PQQ_2: PQQ-like domai 90.0 14 0.0003 33.2 27.2 104 183-295 36-146 (238)
127 smart00284 OLF Olfactomedin-li 90.0 15 0.00034 33.7 18.1 151 219-385 76-253 (255)
128 KOG0268|consensus 90.0 5.9 0.00013 37.8 11.7 212 196-430 89-303 (433)
129 KOG1446|consensus 89.5 18 0.00039 33.8 21.2 197 216-430 14-219 (311)
130 KOG1274|consensus 87.7 44 0.00095 36.0 25.0 233 135-387 15-263 (933)
131 KOG2139|consensus 87.4 28 0.00061 33.4 16.9 193 221-427 155-374 (445)
132 PTZ00420 coronin; Provisional 86.8 43 0.00094 34.9 31.7 209 169-387 72-294 (568)
133 PF00930 DPPIV_N: Dipeptidyl p 86.1 17 0.00037 35.3 13.2 117 152-271 211-338 (353)
134 TIGR03300 assembly_YfgL outer 85.8 36 0.00079 33.2 31.3 185 228-429 145-338 (377)
135 KOG0279|consensus 85.7 30 0.00064 32.0 27.3 240 82-342 17-264 (315)
136 KOG2110|consensus 85.6 35 0.00076 32.8 20.3 149 135-286 86-245 (391)
137 KOG0291|consensus 85.4 53 0.0012 34.7 28.6 187 171-375 350-540 (893)
138 PF13449 Phytase-like: Esteras 85.3 4.3 9.2E-05 39.1 8.4 74 356-431 20-122 (326)
139 cd00054 EGF_CA Calcium-binding 84.5 0.87 1.9E-05 27.6 2.2 30 14-43 2-34 (38)
140 smart00181 EGF Epidermal growt 84.4 0.87 1.9E-05 27.3 2.1 27 17-43 2-30 (35)
141 COG4247 Phy 3-phytase (myo-ino 83.6 35 0.00077 31.2 17.7 81 299-386 151-234 (364)
142 KOG3914|consensus 81.3 44 0.00096 32.4 12.9 153 139-295 69-229 (390)
143 COG1520 FOG: WD40-like repeat 80.0 62 0.0013 31.6 15.0 106 183-294 111-222 (370)
144 KOG1539|consensus 79.2 96 0.0021 33.3 17.0 191 170-381 447-643 (910)
145 PF14583 Pectate_lyase22: Olig 78.3 72 0.0016 31.3 14.1 149 139-291 42-226 (386)
146 PLN00181 protein SPA1-RELATED; 77.6 1.2E+02 0.0025 33.3 36.1 199 82-289 485-690 (793)
147 KOG4441|consensus 76.7 1E+02 0.0022 32.3 15.4 145 131-278 365-530 (571)
148 KOG4649|consensus 76.5 63 0.0014 29.8 22.7 132 135-296 32-172 (354)
149 KOG0292|consensus 76.0 1.2E+02 0.0027 32.9 27.6 273 46-376 105-386 (1202)
150 PF02897 Peptidase_S9_N: Proly 74.0 96 0.0021 30.7 33.1 278 141-430 75-405 (414)
151 PF06739 SBBP: Beta-propeller 73.4 3.7 8.1E-05 25.5 2.4 20 399-419 13-32 (38)
152 KOG0315|consensus 72.9 76 0.0017 29.0 28.4 183 46-246 9-196 (311)
153 KOG0279|consensus 71.6 87 0.0019 29.1 23.1 194 82-291 65-264 (315)
154 KOG1446|consensus 70.9 94 0.002 29.2 28.7 175 151-342 80-264 (311)
155 COG3211 PhoX Predicted phospha 70.9 19 0.00041 36.8 7.8 66 355-421 416-521 (616)
156 cd00053 EGF Epidermal growth f 69.7 4.2 9.1E-05 23.9 2.1 23 21-43 6-31 (36)
157 TIGR03075 PQQ_enz_alc_DH PQQ-d 69.1 1.5E+02 0.0032 30.7 17.5 30 264-294 114-143 (527)
158 PF05694 SBP56: 56kDa selenium 68.8 23 0.00049 35.2 7.8 62 173-236 313-393 (461)
159 PRK13616 lipoprotein LpqB; Pro 67.7 1.7E+02 0.0036 30.8 19.7 107 173-287 449-565 (591)
160 KOG0272|consensus 67.6 1.3E+02 0.0028 29.6 22.8 246 144-410 186-442 (459)
161 KOG0646|consensus 67.5 1.4E+02 0.003 29.8 17.6 109 322-437 189-315 (476)
162 PF12947 EGF_3: EGF domain; I 67.5 2.5 5.3E-05 26.0 0.6 25 20-44 5-32 (36)
163 KOG0291|consensus 66.8 1.8E+02 0.004 31.0 31.8 189 219-428 353-549 (893)
164 KOG2111|consensus 63.8 1.4E+02 0.0029 28.4 17.7 145 143-288 103-255 (346)
165 PF08662 eIF2A: Eukaryotic tra 63.4 1E+02 0.0022 26.9 17.4 103 322-432 73-182 (194)
166 KOG0273|consensus 63.3 1.7E+02 0.0036 29.3 23.2 141 132-277 315-469 (524)
167 KOG0772|consensus 62.9 1.8E+02 0.0039 29.6 21.6 249 169-436 165-463 (641)
168 KOG0650|consensus 60.9 2.1E+02 0.0046 29.7 17.4 73 172-249 567-639 (733)
169 KOG4441|consensus 60.8 2.2E+02 0.0048 29.8 19.4 188 221-429 327-546 (571)
170 PRK13616 lipoprotein LpqB; Pro 59.6 2.3E+02 0.0051 29.8 21.6 58 358-418 499-558 (591)
171 KOG0272|consensus 59.3 1.9E+02 0.0041 28.6 19.3 76 354-430 344-419 (459)
172 COG4247 Phy 3-phytase (myo-ino 59.0 1.5E+02 0.0032 27.3 20.5 109 129-242 148-273 (364)
173 KOG0289|consensus 58.6 2E+02 0.0043 28.6 25.3 190 218-423 305-499 (506)
174 KOG0310|consensus 58.5 2.1E+02 0.0044 28.8 19.4 205 60-283 90-303 (487)
175 KOG0284|consensus 58.1 1.9E+02 0.0042 28.4 13.8 225 173-416 140-367 (464)
176 KOG1272|consensus 56.8 47 0.001 33.0 7.4 66 361-430 257-324 (545)
177 PLN00181 protein SPA1-RELATED; 56.6 3E+02 0.0065 30.1 35.7 234 135-386 485-738 (793)
178 PF07433 DUF1513: Protein of u 56.3 1.8E+02 0.004 27.6 23.3 69 357-430 218-286 (305)
179 COG3211 PhoX Predicted phospha 53.8 94 0.002 32.0 9.2 68 169-237 414-519 (616)
180 KOG2055|consensus 52.1 2.6E+02 0.0056 28.0 19.0 101 322-429 316-417 (514)
181 PF08662 eIF2A: Eukaryotic tra 51.5 1.7E+02 0.0036 25.6 17.2 95 136-235 62-162 (194)
182 PF08309 LVIVD: LVIVD repeat; 51.3 62 0.0013 20.6 5.3 29 263-292 4-32 (42)
183 PF09910 DUF2139: Uncharacteri 50.5 1.9E+02 0.004 27.4 9.8 97 139-256 41-148 (339)
184 KOG1219|consensus 50.1 9.1 0.0002 45.4 1.7 36 8-44 3934-3974(4289)
185 KOG0293|consensus 49.8 2.7E+02 0.0058 27.5 19.6 190 135-340 314-513 (519)
186 cd00216 PQQ_DH Dehydrogenases 46.5 3.4E+02 0.0073 27.7 17.0 16 175-190 257-272 (488)
187 KOG0281|consensus 46.1 1.8E+02 0.004 27.9 9.2 139 272-429 248-388 (499)
188 TIGR03074 PQQ_membr_DH membran 45.7 4.4E+02 0.0095 28.8 15.9 90 136-237 334-432 (764)
189 KOG0278|consensus 45.2 2.5E+02 0.0054 25.8 15.1 141 268-428 152-296 (334)
190 PF15416 DUF4623: Domain of un 42.3 3E+02 0.0065 26.5 10.0 142 260-430 114-272 (442)
191 KOG3567|consensus 41.7 3.8E+02 0.0083 27.0 12.2 53 377-430 444-497 (501)
192 PF00008 EGF: EGF-like domain 41.4 19 0.00041 21.2 1.4 22 22-43 5-30 (32)
193 KOG2111|consensus 41.3 3.2E+02 0.007 26.0 22.2 179 228-430 75-257 (346)
194 KOG2048|consensus 39.7 4.8E+02 0.01 27.5 29.9 194 221-430 387-602 (691)
195 PF13570 PQQ_3: PQQ-like domai 39.5 55 0.0012 20.1 3.5 24 265-289 16-39 (40)
196 PTZ00421 coronin; Provisional 39.0 4.5E+02 0.0097 27.0 30.5 207 82-295 77-296 (493)
197 KOG1407|consensus 38.2 3.3E+02 0.0072 25.3 13.9 52 360-412 152-203 (313)
198 PF14339 DUF4394: Domain of un 37.5 3.2E+02 0.007 24.9 11.1 59 357-416 28-91 (236)
199 PF07433 DUF1513: Protein of u 37.2 3.7E+02 0.0081 25.5 24.0 61 132-192 48-119 (305)
200 KOG0281|consensus 36.5 4E+02 0.0087 25.7 11.2 148 221-387 240-389 (499)
201 KOG4328|consensus 35.6 4.7E+02 0.01 26.2 17.9 154 83-246 237-398 (498)
202 KOG0640|consensus 35.6 2.3E+02 0.005 26.9 8.1 103 320-427 182-289 (430)
203 PF09910 DUF2139: Uncharacteri 35.5 3.9E+02 0.0085 25.3 16.8 40 151-190 78-124 (339)
204 PF10313 DUF2415: Uncharacteri 35.0 1.2E+02 0.0027 19.4 5.0 26 411-437 16-42 (43)
205 COG4222 Uncharacterized protei 34.5 3.6E+02 0.0078 26.7 9.8 92 141-235 110-218 (391)
206 KOG2048|consensus 34.4 5.8E+02 0.013 26.9 32.4 109 322-432 395-508 (691)
207 PHA02713 hypothetical protein; 34.3 5.6E+02 0.012 26.7 17.5 153 132-292 337-536 (557)
208 smart00284 OLF Olfactomedin-li 34.1 3.8E+02 0.0083 24.8 13.1 142 92-239 83-246 (255)
209 KOG0266|consensus 33.6 5.1E+02 0.011 26.1 28.2 157 170-342 202-366 (456)
210 KOG2919|consensus 32.5 4.6E+02 0.0099 25.2 12.1 146 273-429 125-281 (406)
211 KOG0645|consensus 31.1 4.4E+02 0.0096 24.6 24.2 189 218-417 16-214 (312)
212 KOG0275|consensus 31.1 4.7E+02 0.01 24.9 12.4 89 319-416 404-496 (508)
213 KOG0289|consensus 30.4 5.6E+02 0.012 25.6 20.5 190 83-286 306-502 (506)
214 KOG0649|consensus 28.8 4.6E+02 0.01 24.1 19.5 82 215-298 113-195 (325)
215 KOG1407|consensus 28.5 4.9E+02 0.011 24.2 11.7 98 324-429 79-177 (313)
216 PHA02713 hypothetical protein; 28.3 7E+02 0.015 26.0 19.0 61 367-430 463-534 (557)
217 PF00930 DPPIV_N: Dipeptidyl p 28.3 5.5E+02 0.012 24.7 23.8 70 360-430 239-317 (353)
218 PF05345 He_PIG: Putative Ig d 28.2 54 0.0012 21.6 2.2 23 170-192 9-31 (49)
219 smart00564 PQQ beta-propeller 27.7 1.3E+02 0.0027 17.2 4.0 25 268-293 4-28 (33)
220 TIGR02171 Fb_sc_TIGR02171 Fibr 27.6 8.8E+02 0.019 26.9 16.6 96 143-240 318-424 (912)
221 PF01011 PQQ: PQQ enzyme repea 27.1 1.2E+02 0.0027 18.3 3.6 23 271-294 1-23 (38)
222 KOG0918|consensus 26.8 3E+02 0.0065 27.1 7.5 30 264-293 317-346 (476)
223 KOG2110|consensus 26.8 6E+02 0.013 24.7 22.0 118 301-430 127-249 (391)
224 KOG4328|consensus 26.7 6.7E+02 0.014 25.2 21.7 143 80-239 186-345 (498)
225 KOG0645|consensus 25.4 5.6E+02 0.012 23.9 24.4 198 170-382 13-223 (312)
226 KOG0650|consensus 24.3 8.4E+02 0.018 25.6 14.3 71 356-430 567-638 (733)
227 KOG0308|consensus 23.5 8.9E+02 0.019 25.6 16.1 191 83-284 120-322 (735)
228 KOG0973|consensus 23.2 4.1E+02 0.0089 29.4 8.5 76 360-437 134-209 (942)
229 PF09000 Cytotoxic: Cytotoxic; 23.2 2.4E+02 0.0052 21.1 4.8 32 400-431 30-61 (85)
230 PF08954 DUF1900: Domain of un 21.9 3.2E+02 0.007 22.5 6.1 27 362-388 17-43 (136)
231 PF15390 DUF4613: Domain of un 21.1 7.5E+02 0.016 25.9 9.4 59 349-407 332-393 (671)
232 KOG0294|consensus 21.0 7.4E+02 0.016 23.7 24.5 155 171-342 127-283 (362)
233 TIGR03074 PQQ_membr_DH membran 20.4 1.1E+03 0.025 25.7 12.5 94 139-239 381-479 (764)
234 PF09064 Tme5_EGF_like: Thromb 20.2 1.2E+02 0.0025 18.4 2.2 23 21-44 6-29 (34)
235 KOG0263|consensus 20.0 1.1E+03 0.024 25.3 17.9 200 21-247 442-649 (707)
No 1
>KOG1214|consensus
Probab=100.00 E-value=2.1e-46 Score=366.51 Aligned_cols=246 Identities=20% Similarity=0.313 Sum_probs=223.5
Q ss_pred ceeEEEEeecccceeeeEEEecCCCcee-------eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcce
Q psy14258 46 VKTHLYETIEAFWEECFGPMDIEEWDEG-------LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMF 118 (440)
Q Consensus 46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-------~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~ 118 (440)
.-+|||+.+.. |...++++..+. +.++.+- |+|||||.++++|||+|.....|.++.|+|++.+.
T Consensus 990 gt~LL~aqg~~-----I~~lplng~~~~K~~ak~~l~~p~~I--iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~t- 1061 (1289)
T KOG1214|consen 990 GTFLLYAQGQQ-----IGYLPLNGTRLQKDAAKTLLSLPGSI--IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPET- 1061 (1289)
T ss_pred cceEEEeccce-----EEEeecCcchhchhhhhceEecccce--eeeeecccccceEEEeecCCCccccccccCCCCce-
Confidence 34799999999 999999988765 4444444 99999999999999999999999999999887554
Q ss_pred eeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCC
Q psy14258 119 FTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA 193 (440)
Q Consensus 119 ~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~ 193 (440)
++.+++.+|+| ||||+.+|+||+ ++|+++.|||+.+++|+..+|-+|++|++|+.+|.||||||..
T Consensus 1062 ---------i~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR 1132 (1289)
T KOG1214|consen 1062 ---------IVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR 1132 (1289)
T ss_pred ---------eecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccc
Confidence 47889999999 999999999999 8999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEE
Q psy14258 194 TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNL 273 (440)
Q Consensus 194 ~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~l 273 (440)
.+++|++.+|||+++++++.+++..||||++|+....|.|+|.++++++.+.++|..++++.++ +++||+|+-+++++
T Consensus 1133 enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~--LqYPF~itsy~~~f 1210 (1289)
T KOG1214|consen 1133 ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN--LQYPFSITSYADHF 1210 (1289)
T ss_pred cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--ccCceeeeeccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999887 99999999999999
Q ss_pred EEEecCCCeEEEEeccCCCceEEE--ecCCCCeEEEEec
Q psy14258 274 FVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYH 310 (440)
Q Consensus 274 y~td~~~~~i~~~~~~~g~~~~~~--~~~~~p~~~~v~~ 310 (440)
|||||..++|..+++..++..... .+.++.+||....
T Consensus 1211 Y~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~ 1249 (1289)
T KOG1214|consen 1211 YHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVY 1249 (1289)
T ss_pred eeeccccCceEEeeccccccccccccccccceEEEEecc
Confidence 999999999999999988776533 3444567776553
No 2
>KOG1215|consensus
Probab=100.00 E-value=3e-33 Score=302.27 Aligned_cols=396 Identities=23% Similarity=0.371 Sum_probs=308.6
Q ss_pred ccCCCCCCCCCCcc-cCCCceEEc-cCCeeeec---------ceeEEEEeecccceeeeEEEecCCCceeeeee-cccce
Q psy14258 15 DECLIDGSCDQTCT-NTHLSYTYT-DEGFSFQG---------VKTHLYETIEAFWEECFGPMDIEEWDEGLSFL-TFAQE 82 (440)
Q Consensus 15 ~~C~~~~~Cs~~C~-n~~~~~~C~-~~g~~l~~---------~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~-~~~~~ 82 (440)
++|..++.|+|.|. +.++.+.|. ..||.+.. +++++++++.. |+++.++......++. ..+
T Consensus 366 ~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~-----ir~~~~~~~~~~~p~~~~~~-- 438 (877)
T KOG1215|consen 366 PCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHD-----IRRISLDCSDVSRPLEGIKN-- 438 (877)
T ss_pred cccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCcc-----ceecccCCCcceEEccCCcc--
Confidence 44556899999998 569999999 99998754 78999999999 9999998774444443 344
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT 157 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~ 157 (440)
+.++++|..++++||+|....+|.+...++..... +...+.-.|.+ |+||+.+++||+ ..|.+.+
T Consensus 439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~----------~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~ 508 (877)
T KOG1215|consen 439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSECE----------LCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVAD 508 (877)
T ss_pred ceEEEEEecCCEEEEEeccCCeEeeeccCCCccce----------EeccCccccCcEEEEeccCCceecccCCceeEEEE
Confidence 99999999999999999999999998887765432 24567888999 999999999999 6899999
Q ss_pred cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY 237 (440)
Q Consensus 158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~ 237 (440)
++|+.+.+++...+..|+.+++||..|.|||+||+.. ++|.|+.|||+.+..++..++.+|+||++|...+++||+|..
T Consensus 509 ~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~ 587 (877)
T KOG1215|consen 509 LDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP-PRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAK 587 (877)
T ss_pred ccCCceeEEEecCCCCccceeeccccCeeEEecCCCC-chhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEccc
Confidence 9999988999888899999999999999999999974 699999999999999999889999999999999999999999
Q ss_pred CC-cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc-eEEEecCCCCeEEEEe-ccCCC
Q psy14258 238 LD-FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD-YETIANFSRPFAIHIY-HRQKQ 314 (440)
Q Consensus 238 ~~-~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~-~~~~~~~~~p~~~~v~-~~~~q 314 (440)
.. .|.+++.+|..++ +.....+.+|++++++++++||+||....+.+.++..+.. ..+......|..+.++ +...|
T Consensus 588 ~~~~i~~~~~~g~~r~-~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (877)
T KOG1215|consen 588 LDYTIESANMDGQNRR-VVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR 666 (877)
T ss_pred CCcceeeeecCCCceE-EeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC
Confidence 99 8999999999998 3333348999999999999999999999999998888766 3445566678777766 66666
Q ss_pred CCCCCC-------ceeEEeecCCcc---EE--EEEEcCCCC-CC---------ceeeeeecCC-----CCceEEEEEcCC
Q psy14258 315 PDALKP-------STFLLYAKGKPA---II--KGLTFKRDG-TT---------EQAIMPITDL-----KRPSVIDYHEKE 367 (440)
Q Consensus 315 p~~~~~-------~~~l~~~~~~~~---~I--~~i~~~~~~-~~---------~~~~~~~~~~-----~~p~~l~~d~~~ 367 (440)
|...++ ...|++...... +- ..+..++.. .. ......+... ..|...- +..+
T Consensus 667 ~~~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 745 (877)
T KOG1215|consen 667 PTGVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSSPEGYLLITSRTGIPCISLDSELSPDQPLEDG-DTID 745 (877)
T ss_pred CCCCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecCcccccccccccccceeecCcccCCCcccCCC-cccc
Confidence 655421 145554443211 00 011111110 00 0000000000 0011111 6667
Q ss_pred CEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 368 EYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+..+|++...+...+...++.....++..+...++++|+|+....|||+....+.+.+..+++
T Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 808 (877)
T KOG1215|consen 746 RLEYWTDVRVGVAAVSSQNCAPGYDLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDG 808 (877)
T ss_pred cceecccccceeeEEEecCCCCccccccccCCCCCCceeehhhcceEEEeecccEEEEEEEee
Confidence 889999888888877777765544455667789999999999999999999999999999988
No 3
>KOG1214|consensus
Probab=99.93 E-value=3.8e-25 Score=217.88 Aligned_cols=233 Identities=21% Similarity=0.309 Sum_probs=194.4
Q ss_pred cCCcEEEe--ceEEEEecCCceEE-----EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC
Q psy14258 143 VTHKIVYP--EAIYFCTHYMEHCM-----IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK 215 (440)
Q Consensus 143 ~~~~lY~~--~~I~~~~~dg~~~~-----~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~ 215 (440)
.+.+|.++ ..|....++|.... +++...-.-|-||++|-...++||||... +.|.|++|.|...++++...
T Consensus 989 ~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g--~SI~rasL~G~Ep~ti~n~~ 1066 (1289)
T KOG1214|consen 989 VGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG--RSISRASLEGAEPETIVNSG 1066 (1289)
T ss_pred CcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC--CccccccccCCCCceeeccc
Confidence 45567778 89999999985432 33333445689999999999999999987 59999999999999999999
Q ss_pred ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCc
Q psy14258 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~ 293 (440)
+..|.|||||....++||+|+..++|+.+.+||+.+++++... +-+|.+|.++ .++||||||....
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~td-LVNPR~iv~D~~rgnLYwtDWnRen----------- 1134 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTD-LVNPRAIVVDPIRGNLYWTDWNREN----------- 1134 (1289)
T ss_pred CCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeec-ccCcceEEeecccCceeeccccccC-----------
Confidence 9999999999999999999999999999999999999998743 8899999986 6799999995321
Q ss_pred eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258 294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA 373 (440)
Q Consensus 294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~ 373 (440)
-.|.+.+|||+ +..++.-.++.-|.||.||+....|.|.
T Consensus 1135 --------------------------------------PkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWv 1173 (1289)
T KOG1214|consen 1135 --------------------------------------PKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWV 1173 (1289)
T ss_pred --------------------------------------CcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEE
Confidence 23444455555 1112233457789999999999999999
Q ss_pred ECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCee
Q psy14258 374 ELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSI 433 (440)
Q Consensus 374 d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~ 433 (440)
|.+++++.-...+|++|.++.. +|+.|.+|.-+ +.++||||...++|..+.+-+.+.
T Consensus 1174 DAGt~rleC~~p~g~gRR~i~~-~LqYPF~itsy--~~~fY~TDWk~n~vvsv~~~~~~~ 1230 (1289)
T KOG1214|consen 1174 DAGTKRLECTLPDGTGRRVIQN-NLQYPFSITSY--ADHFYHTDWKRNGVVSVNKHSGQF 1230 (1289)
T ss_pred ecCCcceeEecCCCCcchhhhh-cccCceeeeec--cccceeeccccCceEEeecccccc
Confidence 9999999999999999988765 89999999988 778999999999999998876443
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.88 E-value=1.1e-19 Score=197.52 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=187.7
Q ss_pred cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-------------CccCceEEEEeCCCCEEEEE
Q psy14258 168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-------------KIVYPYGVTVDFPTKHVYWV 234 (440)
Q Consensus 168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-------------~~~~P~gl~vD~~~~~ly~~ 234 (440)
.+.+..|.++++|+.+|.||++|.+. ++|.+.+++|.....+... .+..|.||++|+.++.||++
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n--~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNH--NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCC--CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 45778999999999899999999887 5999999998754433321 25579999999888899999
Q ss_pred eCCCCcEEEEEccCCCcEEEec-C--------------CccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258 235 DTYLDFIDRINYDGTDRKTIRK-G--------------FPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 235 d~~~~~i~~~~~dG~~~~~i~~-~--------------~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~ 297 (440)
|..++.|+++++.+...+++.. + ..+.+|.++++.. +.||++|..++.|++++..++......
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 9999999999987776666532 1 1256899999984 599999999999999998665432211
Q ss_pred e---------------cCCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCc----e-----e----
Q psy14258 298 A---------------NFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTE----Q-----A---- 348 (440)
Q Consensus 298 ~---------------~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~----~-----~---- 348 (440)
. .+..|.++.+. |+ ..||+++...++|+++++++.+... + .
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavs----------pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLS----------PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEe----------CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccc
Confidence 1 12235555444 34 5699999988999999987541100 0 0
Q ss_pred -----eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC-------------CCCCeeeEEEecCC
Q psy14258 349 -----IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT-------------GIYNVEGMAVDWMA 410 (440)
Q Consensus 349 -----~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~-------------~~~~~~glAvD~~~ 410 (440)
......+..|.++++|+.+ .+|++|..+++|.++++++....++... .+..|.|||+|..
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d- 869 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN- 869 (1057)
T ss_pred cCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC-
Confidence 0001124579999999865 5999999999999999987555544432 3457999999974
Q ss_pred CcEEEEeCCCCeEEEEEeCCC
Q psy14258 411 NNLYWTDAGIGTINVAKISDF 431 (440)
Q Consensus 411 ~~lYwtd~~~~~I~~~~~~g~ 431 (440)
++||++|..+++|.+++++.+
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCC
Confidence 579999999999999999873
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=2e-19 Score=195.43 Aligned_cols=277 Identities=10% Similarity=0.115 Sum_probs=197.1
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccc---ccceeeccccccce-eeeecCCcEEEe----ceEE
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA---TRPMLERSLLDGTE-RFPMVTHKIVYP----EAIY 154 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~ 154 (440)
|.++++|..++.||++|..+++|++++.++.....+.+.+.. ....-...+..|.| |+|..++.|||+ ++|.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 778999998899999999999999998876543332211100 00011235778999 999988889999 6899
Q ss_pred EEecCCceEEEEEcC----------------CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe-----
Q psy14258 155 FCTHYMEHCMIAIDL----------------NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT----- 213 (440)
Q Consensus 155 ~~~~dg~~~~~~~~~----------------~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~----- 213 (440)
+.++.+...+++... .+..|.+|++||.+|.||+++.+. ++|++.+..+.....+..
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--CeEEEEECCCCeEEEEecCCccc
Confidence 999887776665431 156899999999899999999887 489888875433222211
Q ss_pred ---------cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC--------------------CccCcee
Q psy14258 214 ---------HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG--------------------FPVQNLY 264 (440)
Q Consensus 214 ---------~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~--------------------~~~~~p~ 264 (440)
..+..|+||++++.+++||++|...++|..+++++.....+..+ ..+.+|.
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12568999999988889999999999999999875444332210 1256899
Q ss_pred eeeEecC-EEEEEecCCCeEEEEeccCCCceEEEe--------------cCCCCeEEEEeccCCCCCCCCCceeEEeecC
Q psy14258 265 DITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA--------------NFSRPFAIHIYHRQKQPDALKPSTFLLYAKG 329 (440)
Q Consensus 265 gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~--------------~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~ 329 (440)
|+++..+ .||++|+.+++|.+++..++....+.. .+..|.++.+. +++.||++|.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd----------~dG~lyVaDt 877 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG----------ENGRLFVADT 877 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe----------CCCCEEEEEC
Confidence 9999865 899999999999999987665443332 12246666555 4667999999
Q ss_pred CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258 330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA 373 (440)
Q Consensus 330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~ 373 (440)
.+++|+.++++.........+.+.+...|..+ +...+++|.+
T Consensus 878 ~Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 919 (1057)
T PLN02919 878 NNSLIRYLDLNKGEAAEILTLELKGVQPPRPK--SKSLKRLRRR 919 (1057)
T ss_pred CCCEEEEEECCCCccceeEeeccccccCCCCc--ccchhhhhhc
Confidence 99999999997762212224444555555533 3334667766
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.81 E-value=3.8e-17 Score=151.31 Aligned_cols=210 Identities=17% Similarity=0.207 Sum_probs=159.6
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe--ceEEEEecC
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHY 159 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~d 159 (440)
+.|+.+|..++.|||+|...++|+++..++..... + ....|.| +++...+.||++ ..+.+.+++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----------~--~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~ 68 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----------I--DLPGPNGMAFDRPDGRLYVADSGGIAVVDPD 68 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----------E--ESSSEEEEEEECTTSEEEEEETTCEEEEETT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----------E--ecCCCceEEEEccCCEEEEEEcCceEEEecC
Confidence 67899999899999999999999998887543221 1 2334999 999767889999 667777887
Q ss_pred CceEEEEEcC-----CCCCceEEEEcCCCCeEEEEEcCCCC------CcEEEEeCCCCCceeEEecCccCceEEEEeCCC
Q psy14258 160 MEHCMIAIDL-----NLSKPRGIALDPTSGYMFFTKWGATR------PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228 (440)
Q Consensus 160 g~~~~~~~~~-----~~~~P~~iavd~~~g~lywtd~~~~~------~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~ 228 (440)
....+.+... .+..|.++++|+ .|.||+|+..... ++|+|.+.+|. ...+...+..||||++++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence 7766666653 467899999999 6899999976531 46999999944 33444568899999999999
Q ss_pred CEEEEEeCCCCcEEEEEccCCC-----cEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEe-cC
Q psy14258 229 KHVYWVDTYLDFIDRINYDGTD-----RKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIA-NF 300 (440)
Q Consensus 229 ~~ly~~d~~~~~i~~~~~dG~~-----~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~-~~ 300 (440)
+.||++|...++|.+++++... ++.+.. ......|-|++++.+ +||++++..++|.++++. |+....+. ..
T Consensus 146 ~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 146 KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS
T ss_pred hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC
Confidence 9999999999999999997432 344433 211236999999865 999999999999999996 77666443 44
Q ss_pred CCCeEEEEe
Q psy14258 301 SRPFAIHIY 309 (440)
Q Consensus 301 ~~p~~~~v~ 309 (440)
.+|..+++-
T Consensus 225 ~~~t~~~fg 233 (246)
T PF08450_consen 225 PRPTNCAFG 233 (246)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 688888774
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.78 E-value=3.6e-16 Score=144.74 Aligned_cols=226 Identities=18% Similarity=0.138 Sum_probs=169.1
Q ss_pred ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE
Q psy14258 174 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT 253 (440)
Q Consensus 174 P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~ 253 (440)
|+|++.|+..|.|||+|... ++|.+.++++...+.+.. ..|.|++++..+++||+++... +..+++.....+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~--~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPG--GRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEE
T ss_pred CcceEEECCCCEEEEEEcCC--CEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEE
Confidence 78999999999999999876 599999999876554332 2399999997779999999644 4445876666665
Q ss_pred EecC---C-ccCceeeeeEecC-EEEEEecCC--------CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC
Q psy14258 254 IRKG---F-PVQNLYDITVFEN-NLFVTSWRN--------QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP 320 (440)
Q Consensus 254 i~~~---~-~~~~p~gl~~~~~-~ly~td~~~--------~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~ 320 (440)
+... . .+..|..++++.+ .||+++... +.|++++.. ++...+...+..|.+|.+.. .
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~---------d 144 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSP---------D 144 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEET---------T
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECC---------c
Confidence 5542 2 4778999999876 899999754 569999986 55555667788899998883 2
Q ss_pred ceeEEeecCCccEEEEEEcCCCCC-Cc--eeeeeecCC-CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEEC
Q psy14258 321 STFLLYAKGKPAIIKGLTFKRDGT-TE--QAIMPITDL-KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDT 396 (440)
Q Consensus 321 ~~~l~~~~~~~~~I~~i~~~~~~~-~~--~~~~~~~~~-~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~ 396 (440)
...||++++..++|++++++..+. .. .....+... ..|.|+++|.. +.||+++...+.|.+++++|.-...+. .
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~-G~l~va~~~~~~I~~~~p~G~~~~~i~-~ 222 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD-GNLWVADWGGGRIVVFDPDGKLLREIE-L 222 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT-S-EEEEEETTTEEEEEETTSCEEEEEE--
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC-CCEEEEEcCCCEEEEECCCccEEEEEc-C
Confidence 357999999999999999986522 11 122333333 25899999985 569999999999999999986555444 3
Q ss_pred CCCCeeeEEEe-cCCCcEEEEeC
Q psy14258 397 GIYNVEGMAVD-WMANNLYWTDA 418 (440)
Q Consensus 397 ~~~~~~glAvD-~~~~~lYwtd~ 418 (440)
....|..+|+. ...+.||+|.+
T Consensus 223 p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 223 PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCCEEEEEEECCCCCEEEEEeC
Confidence 46799999993 45678999964
No 8
>KOG1215|consensus
Probab=99.71 E-value=1.5e-15 Score=164.88 Aligned_cols=278 Identities=24% Similarity=0.355 Sum_probs=215.8
Q ss_pred cccce-eeeecCCcEEEe-c-eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCcee
Q psy14258 134 LDGTE-RFPMVTHKIVYP-E-AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFP 210 (440)
Q Consensus 134 ~~p~~-avD~~~~~lY~~-~-~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~ 210 (440)
.+..+ ..|...+.+||+ . ++++...+|+...+......+.|.+++..|..|++||+++....+.+...++++..+..
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~ 277 (877)
T KOG1215|consen 198 QHDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQK 277 (877)
T ss_pred ccccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceE
Confidence 34555 667788889999 3 59999999986666666778999999999999999999988655689999999999999
Q ss_pred EEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC
Q psy14258 211 MVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN 290 (440)
Q Consensus 211 l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~ 290 (440)
+....+..|.|.+.+.-...+|| ..++|+...+ |.... +.++ ||+++.+..+.+..+.+
T Consensus 278 ~~~g~~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~~~-~~~~----------~~~~~~~~~~~~~~~~~ 336 (877)
T KOG1215|consen 278 LCDGDLDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILLSK-LCHG----------YWTDGLNECAERVLKCS 336 (877)
T ss_pred EecCccCCCCcccccccccceee---------eeecccCCce-eeecc-cCcc----------ccccccccchhhccccc
Confidence 88888888999999999999999 6778888877 65532 4444 58887766666655555
Q ss_pred CCceEEE-ecCCCCeEEEEeccCCC----CCCC------------------------------------CCceeEEeecC
Q psy14258 291 SDDYETI-ANFSRPFAIHIYHRQKQ----PDAL------------------------------------KPSTFLLYAKG 329 (440)
Q Consensus 291 g~~~~~~-~~~~~p~~~~v~~~~~q----p~~~------------------------------------~~~~~l~~~~~ 329 (440)
+....+. .......+...++.... |... .+..||+++..
T Consensus 337 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~ 416 (877)
T KOG1215|consen 337 HKCPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNR 416 (877)
T ss_pred CCCCccccCCcccCCccceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecC
Confidence 4433221 11111111111111100 0000 13578888877
Q ss_pred CccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258 330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM 409 (440)
Q Consensus 330 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~ 409 (440)
..|+++.++.. +...|+..+..+.++++|..++++||+|.....|.+...++.....+...+...++|||+||+
T Consensus 417 --~~ir~~~~~~~----~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~ 490 (877)
T KOG1215|consen 417 --HDIRRISLDCS----DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWI 490 (877)
T ss_pred --ccceecccCCC----cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEec
Confidence 88999988776 567788877888999999999999999999999999999998777777789999999999999
Q ss_pred CCcEEEEeCCCCeEEEEEeCCCeeeEEeee
Q psy14258 410 ANNLYWTDAGIGTINVAKISDFSIRKVLYK 439 (440)
Q Consensus 410 ~~~lYwtd~~~~~I~~~~~~g~~~~~~l~~ 439 (440)
.+++||+|.+...|++.+++| +.+++|+.
T Consensus 491 ~~~~y~tDe~~~~i~v~~~~g-~~~~vl~~ 519 (877)
T KOG1215|consen 491 GDNIYWTDEGNCLIEVADLDG-SSRKVLVS 519 (877)
T ss_pred cCCceecccCCceeEEEEccC-CceeEEEe
Confidence 999999999999999999999 66999875
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=7e-13 Score=128.29 Aligned_cols=272 Identities=10% Similarity=0.064 Sum_probs=181.2
Q ss_pred cEEEe----ceEEEEecC--CceEE-EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--Cc
Q psy14258 146 KIVYP----EAIYFCTHY--MEHCM-IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--KI 216 (440)
Q Consensus 146 ~lY~~----~~I~~~~~d--g~~~~-~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--~~ 216 (440)
.+|++ +.|.+.+++ |+... ..+ .....|..|+++|...+||.+.... ..|...+.++......... ..
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~--~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVRPE--FRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEECCC--CcEEEEEECCCCceEEeeeecCC
Confidence 47887 678888775 33221 111 1236799999999888899998754 5787777664333222221 23
Q ss_pred cCceEEEEeCCCCEEEEEeCCCCcEEEEEcc--CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYD--GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d--G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~ 292 (440)
..|.++++++.+++||.+....+.|..++++ |...+.+.......+|.++++..+ ++|+++...+.|..++..+..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 4799999999999999999888888888775 322222221112467888888744 999999999998888775432
Q ss_pred ceE-------EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-------CCCCc
Q psy14258 293 DYE-------TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-------DLKRP 358 (440)
Q Consensus 293 ~~~-------~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-------~~~~p 358 (440)
... .+.....|.++.+.. ...+||+++...+.|..++++.....-.....+. +-..|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~p---------dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHP---------NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred cccccCCCceecCCCCCCceEEECC---------CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 211 111233577765541 1368889887778998888874201111111111 11234
Q ss_pred eEEEEEcCCCEEEEEECCCCeEEEEecCCCC--eEEEE--ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 359 SVIDYHEKEEYIYYAELTSYVIERRKMFGRG--KEVVI--DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~--~~~~~--~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
.++++++.++++|+++...++|..++++... .+.+- ..+ ..|.++++++.++.||.++...++|.+++++.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 5799999999999999888999888875322 22221 122 47999999999999999999899999999864
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.65 E-value=2e-12 Score=125.59 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=176.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCC-CCCcEEEEeCCCC-CceeEEec---CccCceEEEEeCCCCEEEEEeCCCCcEEEE
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGA-TRPMLERSLLDGT-ERFPMVTH---KIVYPYGVTVDFPTKHVYWVDTYLDFIDRI 244 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~-~~~~I~r~~~dG~-~~~~l~~~---~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~ 244 (440)
...+|.-|++||..++||.++... ..+.|.....+.. ...+++.. .-..|..+++|+.+..||+++...+.+..+
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 567899999999999999999863 2278888877764 33333332 346799999999999999999999999888
Q ss_pred EccC--CCcEE--Eec---------CCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCc-eE---EE--ecCCCC
Q psy14258 245 NYDG--TDRKT--IRK---------GFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDD-YE---TI--ANFSRP 303 (440)
Q Consensus 245 ~~dG--~~~~~--i~~---------~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~-~~---~~--~~~~~p 303 (440)
+++. .-... +.. .+...||+.+.+..+ ++|++|.+.++|+.++...... .. .+ .....|
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 8764 22222 111 123578999988744 9999999999999888755441 21 12 233368
Q ss_pred eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC-CCCcee-e---eee--cCCCCceEEEEEcCCCEEEEEECC
Q psy14258 304 FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD-GTTEQA-I---MPI--TDLKRPSVIDYHEKEEYIYYAELT 376 (440)
Q Consensus 304 ~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~-~~~~~~-~---~~~--~~~~~p~~l~~d~~~~~vy~~d~~ 376 (440)
.++.+.. ...++|++....+.|..+.++.. +..... . +|. .+...|.+|++++++++||+++..
T Consensus 195 Rh~~f~p---------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 195 RHLAFSP---------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EEEEE-T---------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred cEEEEcC---------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 8886551 13688888887789998888833 111110 1 111 111268899999999999999999
Q ss_pred CCeEEEEecCCC--CeEEE--EECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 377 SYVIERRKMFGR--GKEVV--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 377 ~~~I~r~~~~g~--~~~~~--~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
.++|..++++.. ..+.+ +..+-..|.+|++|+.++.||+++...+.|.+++.|.
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 999999998643 22222 2334467999999999999999999999999999864
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.56 E-value=5.5e-11 Score=115.07 Aligned_cols=292 Identities=12% Similarity=0.046 Sum_probs=185.0
Q ss_pred cEEEEEEcCCCCceeEEeCCC-CCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCce-EEE
Q psy14258 93 HCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEH-CMI 165 (440)
Q Consensus 93 ~~ly~~d~~~~~I~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~-~~~ 165 (440)
.++|.++...+.|...+++.. .+..+ ........|.. ++++.++.||++ +.|...+.+... ...
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~---------~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~ 72 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLL---------QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTF 72 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeee---------eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEE
Confidence 468999888888888887421 11111 11123457888 999999999998 677776665321 111
Q ss_pred EEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC--CCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcE
Q psy14258 166 AID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD--GTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFI 241 (440)
Q Consensus 166 ~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d--G~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i 241 (440)
+-. .....|.+|+++|...+||.+.... ++|...+++ |...+.+.. .....|.++++++.+++||+++...+.|
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~--~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNA--NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCC--CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 111 1235799999999888899998765 577777665 433222211 2345789999999999999999999999
Q ss_pred EEEEccCCC-cE-----EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCC-CceEEEecCC-CC--------
Q psy14258 242 DRINYDGTD-RK-----TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNS-DDYETIANFS-RP-------- 303 (440)
Q Consensus 242 ~~~~~dG~~-~~-----~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g-~~~~~~~~~~-~p-------- 303 (440)
..++++... .. .+... .-..|.++++..+ ++|.++...+.|..++...+ ...+.+.... .|
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 999986421 11 11111 1346889998766 99999988888877765421 1222222111 11
Q ss_pred -eEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEE
Q psy14258 304 -FAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE 381 (440)
Q Consensus 304 -~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~ 381 (440)
.++.+. |+ .+||+++...+.|..++++..+........+.....|.++++++.+++||+++...++|.
T Consensus 230 ~~~i~~~----------pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 230 AADIHIT----------PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred ceeEEEC----------CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEE
Confidence 122221 33 689998776688888887654211111112222357899999999999999998889888
Q ss_pred EEecCCC--CeEEEEE-CCCCCeeeEEE
Q psy14258 382 RRKMFGR--GKEVVID-TGIYNVEGMAV 406 (440)
Q Consensus 382 r~~~~g~--~~~~~~~-~~~~~~~glAv 406 (440)
.++++.. ..+.+-. .-...|.+++|
T Consensus 300 v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 300 VYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEEcCCCCcEEEccccccCCCceEEEE
Confidence 8877632 2222211 11256888887
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=2.3e-10 Score=111.21 Aligned_cols=244 Identities=16% Similarity=0.141 Sum_probs=167.9
Q ss_pred ccccccce-eeeecCCcEEEe-------ceEEEEecCCc--eEEEEEc--CCCCCceEEEEcCCCCeEEEEEcCCCCCcE
Q psy14258 131 RSLLDGTE-RFPMVTHKIVYP-------EAIYFCTHYME--HCMIAID--LNLSKPRGIALDPTSGYMFFTKWGATRPML 198 (440)
Q Consensus 131 ~~~~~p~~-avD~~~~~lY~~-------~~I~~~~~dg~--~~~~~~~--~~~~~P~~iavd~~~g~lywtd~~~~~~~I 198 (440)
....+|.- ++|+.++.||.+ +.|..+..+.. ..+.+-. ..-..|..|++||..++||.++.+. +.|
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~--g~v 111 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG--GSV 111 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--TEE
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--CeE
Confidence 45678999 999999999999 26766665542 3322222 2446899999999999999999876 578
Q ss_pred EEEeCCC--CCcee--EEe----------cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC--cEEEe--cCCcc
Q psy14258 199 ERSLLDG--TERFP--MVT----------HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD--RKTIR--KGFPV 260 (440)
Q Consensus 199 ~r~~~dG--~~~~~--l~~----------~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~--~~~i~--~~~~~ 260 (440)
....++- ..... ++. ....+|..+.+++.++.||++|.+.++|..++++... ..... .-..-
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 7777764 33322 111 1246789999999999999999999999999997655 32211 11124
Q ss_pred CceeeeeEecC--EEEEEecCCCeEEEEecc--CCCceE--EEecCC-------CCeEEEEeccCCCCCCCCCc-eeEEe
Q psy14258 261 QNLYDITVFEN--NLFVTSWRNQSIIRVNKF--NSDDYE--TIANFS-------RPFAIHIYHRQKQPDALKPS-TFLLY 326 (440)
Q Consensus 261 ~~p~gl~~~~~--~ly~td~~~~~i~~~~~~--~g~~~~--~~~~~~-------~p~~~~v~~~~~qp~~~~~~-~~l~~ 326 (440)
..|..+++..+ ++|++...++.|..++.. +|+... .+.... .|.+|++. |+ .|||+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is----------pdg~~lyv 261 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS----------PDGRFLYV 261 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-----------TTSSEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe----------cCCCEEEE
Confidence 67999999765 999999989998888766 342221 222221 24556554 33 78999
Q ss_pred ecCCccEEEEEEcCCC-CCCcee-eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258 327 AKGKPAIIKGLTFKRD-GTTEQA-IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG 387 (440)
Q Consensus 327 ~~~~~~~I~~i~~~~~-~~~~~~-~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g 387 (440)
++...+.|..+.++.. +..... .++. +...|+++++++.+++||+++..++.|..+++|.
T Consensus 262 snr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 262 SNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 9998889998998654 122211 2222 3456999999999999999999999998887763
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.1e-11 Score=116.78 Aligned_cols=220 Identities=15% Similarity=0.191 Sum_probs=147.2
Q ss_pred EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258 166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN 245 (440)
Q Consensus 166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~ 245 (440)
++.......+|.+-++..+.|||+|... ++|.|.+.+....+ .....-..+++..+| ..++|..++.+...+..
T Consensus 19 ~~~~~~~~gEgP~w~~~~~~L~w~DI~~--~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~-- 92 (307)
T COG3386 19 LLDKGATLGEGPVWDPDRGALLWVDILG--GRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACEHGVRLLDP-- 92 (307)
T ss_pred EeecccccccCccCcCCCCEEEEEeCCC--CeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEccccEEEec--
Confidence 3444556788889999999999999987 59999999743333 333444558899998 77888888765433322
Q ss_pred ccCCCcEEEec---CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc
Q psy14258 246 YDGTDRKTIRK---GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS 321 (440)
Q Consensus 246 ~dG~~~~~i~~---~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~ 321 (440)
-.|..++.+.. +.....|+...++.+ .+|+++..... .+.. ..+
T Consensus 93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~-------~~~~------------------~~~------- 140 (307)
T COG3386 93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD-------LGKS------------------EER------- 140 (307)
T ss_pred cCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc-------cCcc------------------ccC-------
Confidence 22333244433 334677888888865 88888865300 0000 000
Q ss_pred eeEEeecCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecC---CC--CeEEEEE
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMF---GR--GKEVVID 395 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~---g~--~~~~~~~ 395 (440)
..+.+++++.++. ....+.+ +..|.||+++++++.+|++|+..++|+|..++ |. ++...+.
T Consensus 141 --------~~G~lyr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 141 --------PTGSLYRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred --------CcceEEEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence 1146666776444 2333444 77899999999999999999999999999987 31 2332333
Q ss_pred --CCCCCeeeEEEecCCCcEE-EEeCCCCeEEEEEeCCCeeeEEe
Q psy14258 396 --TGIYNVEGMAVDWMANNLY-WTDAGIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 396 --~~~~~~~glAvD~~~~~lY-wtd~~~~~I~~~~~~g~~~~~~l 437 (440)
..-+.|+|+++|. .++|| ++..+...|.+++++|+...++.
T Consensus 208 ~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pdG~l~~~i~ 251 (307)
T COG3386 208 FDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPDGKLLGEIK 251 (307)
T ss_pred ccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCCCcEEEEEE
Confidence 3347899999995 66677 44444459999999996655544
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=1.7e-09 Score=99.78 Aligned_cols=275 Identities=14% Similarity=0.132 Sum_probs=188.1
Q ss_pred ceEEEEecCCceEE---EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC-CceeEEec---CccCceEEE
Q psy14258 151 EAIYFCTHYMEHCM---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT-ERFPMVTH---KIVYPYGVT 223 (440)
Q Consensus 151 ~~I~~~~~dg~~~~---~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~-~~~~l~~~---~~~~P~gl~ 223 (440)
..|.+.++++..-+ ......+.+|.=|+++|....||........+.|.....|.. ++.+++.. ....|.-++
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs 95 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS 95 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence 45788887743322 222246789999999998889999987644478999998875 66666653 234569999
Q ss_pred EeCCCCEEEEEeCCCCcEEEEEc--cCCCcEEE---ec-CC------cc--CceeeeeEecCEEEEEecCCCeEEEEecc
Q psy14258 224 VDFPTKHVYWVDTYLDFIDRINY--DGTDRKTI---RK-GF------PV--QNLYDITVFENNLFVTSWRNQSIIRVNKF 289 (440)
Q Consensus 224 vD~~~~~ly~~d~~~~~i~~~~~--dG~~~~~i---~~-~~------~~--~~p~gl~~~~~~ly~td~~~~~i~~~~~~ 289 (440)
+|+.++.||.+..+.+.|.+..+ +|.-...+ .. +. .- .|+..++-++++|...|.+..+|...+..
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc
Confidence 99999999999999998877765 45432221 11 11 01 23445555677999999999999988877
Q ss_pred CCCceE----EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCC-CCCce----eeeeec--CCCCc
Q psy14258 290 NSDDYE----TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRD-GTTEQ----AIMPIT--DLKRP 358 (440)
Q Consensus 290 ~g~~~~----~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~-~~~~~----~~~~~~--~~~~p 358 (440)
.|+... .+.....|..| +|||.. .+.|+....++.|.....+.. +.-++ ..+|-. +-...
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi-~FHpn~--------k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHI-VFHPNG--------KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred cCccccccccccCCCCCcceE-EEcCCC--------cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 665433 22333357777 566433 466777666788877777764 11111 112211 11234
Q ss_pred eEEEEEcCCCEEEEEECCCCeEEEEecC--CCCeEEEE--ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeee
Q psy14258 359 SVIDYHEKEEYIYYAELTSYVIERRKMF--GRGKEVVI--DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIR 434 (440)
Q Consensus 359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~--g~~~~~~~--~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~ 434 (440)
.+|.+.+.+++||.+|.+.++|..+.++ |+..+.+. ..+...|.+..++.-++.|+.+...++.|.+++.+.++.+
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 4788999999999999988887666654 44333332 2444679999999999999999999999999999986544
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.43 E-value=5.6e-11 Score=116.37 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=158.2
Q ss_pred cccccce-eeeecCCcEEEe----------------ceEEEEec---CCceE-EEEEcCCCCCceEEEEcCCCCeEEEEE
Q psy14258 132 SLLDGTE-RFPMVTHKIVYP----------------EAIYFCTH---YMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTK 190 (440)
Q Consensus 132 ~~~~p~~-avD~~~~~lY~~----------------~~I~~~~~---dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd 190 (440)
.+.+|.+ |+|..++ ||++ ++|.+... ||..- ..++...+..|.||++.+ .| ||+++
T Consensus 12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~ 88 (367)
T TIGR02604 12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVAT 88 (367)
T ss_pred ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeC
Confidence 3789999 9997765 9998 17877743 45442 345566889999999987 56 99987
Q ss_pred cCCCCCcEEEE-eCCCC-----CceeEEec---C----ccCceEEEEeCCCCEEEEEeCCC-------------------
Q psy14258 191 WGATRPMLERS-LLDGT-----ERFPMVTH---K----IVYPYGVTVDFPTKHVYWVDTYL------------------- 238 (440)
Q Consensus 191 ~~~~~~~I~r~-~~dG~-----~~~~l~~~---~----~~~P~gl~vD~~~~~ly~~d~~~------------------- 238 (440)
. ++|.+. +.+|. .+++++.. . ...|+++++++ .++||+++...
T Consensus 89 ~----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 89 P----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred C----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccC
Confidence 4 478877 55543 33444432 1 23488999995 67999987621
Q ss_pred CcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccC-CCc-------------------eEE-
Q psy14258 239 DFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN-SDD-------------------YET- 296 (440)
Q Consensus 239 ~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~-g~~-------------------~~~- 296 (440)
+.|.+++.+|+..+.+..+ ++.|+|++++.+ .+|++|.......+++... ++. ...
T Consensus 164 g~i~r~~pdg~~~e~~a~G--~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 241 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHG--FQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVP 241 (367)
T ss_pred ceEEEEecCCCeEEEEecC--cCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCccccccccccccccc
Confidence 4699999999988877766 899999999754 8999987666555555321 100 000
Q ss_pred -----------------EecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC--Cceeeeeec---C
Q psy14258 297 -----------------IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT--TEQAIMPIT---D 354 (440)
Q Consensus 297 -----------------~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~--~~~~~~~~~---~ 354 (440)
+.....|.++.++....-|.. -++-|++++-..+.|.++.++..+. ..+....+. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~--~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~ 319 (367)
T TIGR02604 242 TGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEE--YRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDT 319 (367)
T ss_pred ccccccccccccccccccCCCccccEEEEeCCCcCCHH--HCCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCC
Confidence 001114667777754433311 1366788888778999998874422 111011111 1
Q ss_pred CCCceEEEEEcCCCEEEEEEC----------------CCCeEEEEecC
Q psy14258 355 LKRPSVIDYHEKEEYIYYAEL----------------TSYVIERRKMF 386 (440)
Q Consensus 355 ~~~p~~l~~d~~~~~vy~~d~----------------~~~~I~r~~~~ 386 (440)
..+|..++++++ +.||++|. ..++|||+...
T Consensus 320 ~~rp~dv~~~pD-G~Lyv~d~~~~~i~~~~~d~~~~~~~GrIyRi~~~ 366 (367)
T TIGR02604 320 WFRPVNVTVGPD-GALYVSDWYDRGIEHHHDDLNDGRNSGRIYRITPK 366 (367)
T ss_pred cccccceeECCC-CCEEEEEeccCccccCCcccccCCCCceEEEEccC
Confidence 248999999996 55999992 45677777554
No 16
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.4e-10 Score=109.19 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=144.9
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-ceEEEEecC-
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-EAIYFCTHY- 159 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-~~I~~~~~d- 159 (440)
..+..++...+.|||+|...++|++.......... +......+.+ .+| ..++|..+ ..+.+.+.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-----------~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~~~ 94 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-----------FPSPGGFSSGALID-AGGRLIACEHGVRLLDPDT 94 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-----------EECCCCcccceeec-CCCeEEEEccccEEEeccC
Confidence 55667899999999999999999998876333222 2223333666 776 45557766 555555544
Q ss_pred CceEEEEEc----CCCCCceEEEEcCCCCeEEEEEcC-----C----CCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258 160 MEHCMIAID----LNLSKPRGIALDPTSGYMFFTKWG-----A----TRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226 (440)
Q Consensus 160 g~~~~~~~~----~~~~~P~~iavd~~~g~lywtd~~-----~----~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~ 226 (440)
|...+.+.. ..+..|....+|| .|.+|+++.. . ..++++|.+.+|... .++...+..||||++++
T Consensus 95 ~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~Sp 172 (307)
T COG3386 95 GGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSP 172 (307)
T ss_pred CceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECC
Confidence 434233333 2357899999999 5999999988 2 156799999876554 35555588999999999
Q ss_pred CCCEEEEEeCCCCcEEEEEcc---CC--C-cEEEecCCccCceeeeeEecC-EEE-EEecCCCeEEEEeccCCCceEEE-
Q psy14258 227 PTKHVYWVDTYLDFIDRINYD---GT--D-RKTIRKGFPVQNLYDITVFEN-NLF-VTSWRNQSIIRVNKFNSDDYETI- 297 (440)
Q Consensus 227 ~~~~ly~~d~~~~~i~~~~~d---G~--~-~~~i~~~~~~~~p~gl~~~~~-~ly-~td~~~~~i~~~~~~~g~~~~~~- 297 (440)
.+..||++|+..++|++++++ |. + +..+.....-..|-|++++.+ .|| .+-|....|.++++. |+....+
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 999999999999999999987 31 1 222222212357999999987 555 444555589999987 6665533
Q ss_pred ecCCCCeEEEEe
Q psy14258 298 ANFSRPFAIHIY 309 (440)
Q Consensus 298 ~~~~~p~~~~v~ 309 (440)
.....|....+-
T Consensus 252 lP~~~~t~~~Fg 263 (307)
T COG3386 252 LPVKRPTNPAFG 263 (307)
T ss_pred CCCCCCccceEe
Confidence 233445555444
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.5e-09 Score=106.77 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=175.5
Q ss_pred CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE-EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC
Q psy14258 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM-VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD 250 (440)
Q Consensus 172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l-~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~ 250 (440)
..|.++++++....+|+++...+ .+...+.- .+..+. ...+..+|.+++++..+.++|..+...+.|..++.....
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~--~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSN--DVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCc--eeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence 48999999997779999997753 44444433 222222 122347899999999999999999999999999844332
Q ss_pred -cEEEecCCccCceeeeeEe--cCEEEEEec--CCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeE
Q psy14258 251 -RKTIRKGFPVQNLYDITVF--ENNLFVTSW--RNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFL 324 (440)
Q Consensus 251 -~~~i~~~~~~~~p~gl~~~--~~~ly~td~--~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l 324 (440)
.+.+..+ ..|.++++. +..+|+++. .++.+..++..+++....+.....|.++.+. |+ .++
T Consensus 108 ~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~----------p~g~~v 174 (381)
T COG3391 108 VLGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVD----------PDGNKV 174 (381)
T ss_pred eeeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEEC----------CCCCeE
Confidence 2333333 378888876 459999999 4799999999888776664444467777665 33 668
Q ss_pred EeecCCccEEEEEEcCCCCCCc--eeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEecCCCCeEEE--EECCC
Q psy14258 325 LYAKGKPAIIKGLTFKRDGTTE--QAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKMFGRGKEVV--IDTGI 398 (440)
Q Consensus 325 ~~~~~~~~~I~~i~~~~~~~~~--~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~--~~~~~ 398 (440)
++++...+.|..++.++. ... .....+.-...|.++++++.+.++|+++... +.+.+.+......... .....
T Consensus 175 yv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 253 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG 253 (381)
T ss_pred EEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC
Confidence 999876689998887665 111 0111244456899999999999999999877 6899998876443222 22334
Q ss_pred CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 399 YNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 399 ~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
.|.+++++|.+..+|.++...+.+.+++...
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 7999999999999999999889999998775
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.37 E-value=1.9e-08 Score=95.15 Aligned_cols=275 Identities=11% Similarity=0.021 Sum_probs=170.0
Q ss_pred cEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceE
Q psy14258 146 KIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221 (440)
Q Consensus 146 ~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g 221 (440)
++|++ +.+.+.+++.......+. .-..|.+++++|..+.||.+.... ..|...++++......+.. ...|..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~-~~~~~~ 77 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDS--DTIQVIDLATGEVIGTLPS-GPDPEL 77 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCC--CeEEEEECCCCcEEEeccC-CCCccE
Confidence 46666 678888876544433333 235689999999767788887554 5888888875433222222 234778
Q ss_pred EEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIAN 299 (440)
Q Consensus 222 l~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~ 299 (440)
+++++.++.||.+....+.|...++........... -..|.++++..+ .++.+......+..++..+++....+..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 899988888998877677898888865332211111 234778887644 5555544334455556544433322222
Q ss_pred CCCCeEEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeec----CCCCceEEEEEcCCCEEEEEE
Q psy14258 300 FSRPFAIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT----DLKRPSVIDYHEKEEYIYYAE 374 (440)
Q Consensus 300 ~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~----~~~~p~~l~~d~~~~~vy~~d 374 (440)
...|..+.+. ++ .+|+++....+.|..+++.............. ....|.+++|++.++.+|++.
T Consensus 156 ~~~~~~~~~s----------~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 156 DQRPRFAEFT----------ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCCccEEEEC----------CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 2245444333 23 45656544447788888765411111111111 112467899999999999987
Q ss_pred CCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258 375 LTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 375 ~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l 437 (440)
...++|...++........+..+ ..+.+|++.+.+..||.+....+.|.+.++++....+.+
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLLVG-QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEeC-CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 77788998888753332222222 468999999989999998877889999999884433433
No 19
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.36 E-value=2.2e-10 Score=110.35 Aligned_cols=273 Identities=14% Similarity=0.057 Sum_probs=161.6
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec---CCcEEEe---c----
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV---THKIVYP---E---- 151 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~---~~~lY~~---~---- 151 (440)
|.+|++.+. ++||+++. .++|+++..++.....+. ....+ ...+...+-+ |+++. ++.||++ .
T Consensus 4 P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~---~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVA---DLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp EEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEE---E-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred ceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceec---ccccc-cccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 999999987 78999998 789988875544312221 11122 2345567889 99983 6789988 2
Q ss_pred -----eEEEEecCCc-----eEEEEEc------CCCCCceEEEEcCCCCeEEEEEcCC-----------CCCcEEEEeCC
Q psy14258 152 -----AIYFCTHYME-----HCMIAID------LNLSKPRGIALDPTSGYMFFTKWGA-----------TRPMLERSLLD 204 (440)
Q Consensus 152 -----~I~~~~~dg~-----~~~~~~~------~~~~~P~~iavd~~~g~lywtd~~~-----------~~~~I~r~~~d 204 (440)
+|.+..++.. ..++++. ...+.-.+|+++| .|+||++-... ..++|.|++.|
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 5888776543 2344443 1345678899999 68999994221 14789999999
Q ss_pred CCC------------ceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeee--Eec
Q psy14258 205 GTE------------RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDIT--VFE 270 (440)
Q Consensus 205 G~~------------~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~--~~~ 270 (440)
|+. ...++..++..|.+|++|+.+++||.+|.+.+..+.++ .+..+.....|..-. -..
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein-------~i~~G~nYGWP~~~~~~~~~ 229 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEIN-------RIEPGGNYGWPYCEGGPKYS 229 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEE-------EE-TT-B--TTTBSSSCSTT
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEE-------EeccCCcCCCCCCcCCCCCC
Confidence 972 34677788999999999988899999997765444443 222222233333110 000
Q ss_pred CEEEEEecCCCeEEEEeccCCC--ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCcee
Q psy14258 271 NNLFVTSWRNQSIIRVNKFNSD--DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQA 348 (440)
Q Consensus 271 ~~ly~td~~~~~i~~~~~~~g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~ 348 (440)
+. ...+. ....+. ....+..-..|.++.++....-|. =++-+++++....+|.++.++..+.....
T Consensus 230 ~~-~~~~~--------~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~---~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 297 (331)
T PF07995_consen 230 GP-PIGDA--------PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPE---YRGDLFVADYGGGRIWRLDLDEDGSVTEE 297 (331)
T ss_dssp SS--ECTG--------SS-TTS---SEEETTT--EEEEEEE-SSSSGG---GTTEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred CC-ccccc--------cCCCCcCccceeecCccccCceEEECCccCcc---ccCcEEEecCCCCEEEEEeeecCCCccce
Confidence 00 00000 000011 011122223588988875544331 24678888887789999999755222222
Q ss_pred eeeecCCC-CceEEEEEcCCCEEEEEECCCCeEEE
Q psy14258 349 IMPITDLK-RPSVIDYHEKEEYIYYAELTSYVIER 382 (440)
Q Consensus 349 ~~~~~~~~-~p~~l~~d~~~~~vy~~d~~~~~I~r 382 (440)
...+.... +|.+|+++++ +.||+++...+.|||
T Consensus 298 ~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 298 EEFLGGFGGRPRDVAQGPD-GALYVSDDSDGKIYR 331 (331)
T ss_dssp EEECTTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred EEccccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence 22334455 7999999995 779999989999997
No 20
>KOG4659|consensus
Probab=99.34 E-value=4.3e-10 Score=117.27 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=133.8
Q ss_pred ceeEEEEeecccceeeeEEEecCCCcee-eeee-cccceEEEEEeeecccEEEEEEcCCCCceeEE-eCCCCCcc----e
Q psy14258 46 VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIA-LDPTSGYM----F 118 (440)
Q Consensus 46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~-~~~~~~~~----~ 118 (440)
+.+|++.+-+- |+|+..+|...+ +.+. ...+.-.-||++|..+.||++|..+.+|+|+. +....... +
T Consensus 375 DGSl~VGDfNy-----IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv 449 (1899)
T KOG4659|consen 375 DGSLIVGDFNY-----IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV 449 (1899)
T ss_pred CCcEEEccchh-----eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence 67888888888 999999998877 5554 22233678999999999999999999999865 22211110 0
Q ss_pred eecc----------ccccceeeccccccce-eeeecCCcEEEe--ceEEEEecCCceEEEEEcC----------------
Q psy14258 119 FTKW----------GATRPMLERSLLDGTE-RFPMVTHKIVYP--EAIYFCTHYMEHCMIAIDL---------------- 169 (440)
Q Consensus 119 ~~~~----------~~~~v~~~~~~~~p~~-avD~~~~~lY~~--~~I~~~~~dg~~~~~~~~~---------------- 169 (440)
.+.+ ..........+..|.| |||- .++||++ .+|.+.+.+|--...+...
T Consensus 450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~ 528 (1899)
T KOG4659|consen 450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLV 528 (1899)
T ss_pred eccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchh
Confidence 0000 0001112356789999 9995 5569999 6788888888554443221
Q ss_pred --CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec--------------------CccCceEEEEeCC
Q psy14258 170 --NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH--------------------KIVYPYGVTVDFP 227 (440)
Q Consensus 170 --~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~--------------------~~~~P~gl~vD~~ 227 (440)
.+.+|..+||||..+.||+-|.. -|.|+..++..+ ++... .+..|..|++- .
T Consensus 529 ~~~leWPT~LaV~Pmdnsl~Vld~n----vvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~ 602 (1899)
T KOG4659|consen 529 DLQLEWPTSLAVDPMDNSLLVLDTN----VVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-T 602 (1899)
T ss_pred heeeecccceeecCCCCeEEEeecc----eEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-C
Confidence 46899999999999999999954 788888887655 22111 13346788997 6
Q ss_pred CCEEEEEeCCCCcEEEEEccCCC
Q psy14258 228 TKHVYWVDTYLDFIDRINYDGTD 250 (440)
Q Consensus 228 ~~~ly~~d~~~~~i~~~~~dG~~ 250 (440)
.+-||++++...+|.++..-+++
T Consensus 603 ~G~lyvaEsD~rriNrvr~~~td 625 (1899)
T KOG4659|consen 603 DGALYVAESDGRRINRVRKLSTD 625 (1899)
T ss_pred CceEEEEeccchhhhheEEeccC
Confidence 78999999877766665543333
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.34 E-value=2.5e-08 Score=94.39 Aligned_cols=282 Identities=11% Similarity=0.013 Sum_probs=171.1
Q ss_pred EEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEc
Q psy14258 94 CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAID 168 (440)
Q Consensus 94 ~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~ 168 (440)
.+|.+....+.|+..++....... .+ .....|.+ ++++.++.+|.+ +.|.+.+.++......+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~----------~~-~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTR----------TF-PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEE----------EE-ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence 466676666666665554222110 11 22345788 898888888877 678888887544332222
Q ss_pred CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC
Q psy14258 169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG 248 (440)
Q Consensus 169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG 248 (440)
.-..|..++++|..+.+|.+.... ..|...++........+. .-..|.++++++.+..++.+......+..++...
T Consensus 71 -~~~~~~~~~~~~~g~~l~~~~~~~--~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 71 -SGPDPELFALHPNGKILYIANEDD--NLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred -CCCCccEEEECCCCCEEEEEcCCC--CeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence 224578999999777788876543 488888887533221111 1235789999987777777765444555556543
Q ss_pred CCcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccCCCceEEEe-cC-------CCCeEEEEeccCCCCCCC
Q psy14258 249 TDRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFNSDDYETIA-NF-------SRPFAIHIYHRQKQPDAL 318 (440)
Q Consensus 249 ~~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~g~~~~~~~-~~-------~~p~~~~v~~~~~qp~~~ 318 (440)
......... -..|..+++.. ..||++....+.|..++..+++....+. .. ..|.++.+.
T Consensus 147 ~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s--------- 215 (300)
T TIGR03866 147 YEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT--------- 215 (300)
T ss_pred CeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC---------
Confidence 322211111 13466676653 3677776667788888887765543221 10 012333322
Q ss_pred CCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC
Q psy14258 319 KPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG 397 (440)
Q Consensus 319 ~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~ 397 (440)
|+ .+++++....+.|..+++... .....+.....+.+++|++.+++||.+....+.|...++.+.....-+..+
T Consensus 216 -~dg~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 216 -KDGKTAFVALGPANRVAVVDAKTY----EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred -CCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 23 456666554567888877543 122112222468899999999999988777899999999875543333444
Q ss_pred CCCeeeEEEe
Q psy14258 398 IYNVEGMAVD 407 (440)
Q Consensus 398 ~~~~~glAvD 407 (440)
..|.+||+-
T Consensus 291 -~~~~~~~~~ 299 (300)
T TIGR03866 291 -RLPWGVVVR 299 (300)
T ss_pred -cccceeEeC
Confidence 789999973
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=2.4e-08 Score=95.54 Aligned_cols=261 Identities=13% Similarity=0.127 Sum_probs=154.4
Q ss_pred ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEc---------CCCCCcEEEEeCCCCCce-eEEe-c-----
Q psy14258 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW---------GATRPMLERSLLDGTERF-PMVT-H----- 214 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~---------~~~~~~I~r~~~dG~~~~-~l~~-~----- 214 (440)
++|.+.+.+.....--+..+ ..|+++ +.|.++.||.++. .. ..|...+..-.... .+.. .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~--d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRT--DYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCC--CEEEEEECccCcEEeEEccCCCchhh
Confidence 47888887765543333333 589997 9999999999998 44 47888777532221 2211 0
Q ss_pred CccCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC-C
Q psy14258 215 KIVYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN-S 291 (440)
Q Consensus 215 ~~~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~-g 291 (440)
....|..+++.+.++.||+++.. .+.+..+|+....+ ..+.- +.+..+-...+.=+...+..++...+.... |
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v----p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV----PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC----CCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 13456699999999999999976 78999998765433 22322 111111111111111111222222222111 2
Q ss_pred CceEEEecCCCCeEEEEeccCCCCCCCCC------ceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC------CCce
Q psy14258 292 DDYETIANFSRPFAIHIYHRQKQPDALKP------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL------KRPS 359 (440)
Q Consensus 292 ~~~~~~~~~~~p~~~~v~~~~~qp~~~~~------~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~------~~p~ 359 (440)
+.. -....+++....|....| +..+|++.. +.|..+++.+........+.+... -+|.
T Consensus 179 ~~~--------~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 179 NPK--------IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred ceE--------EeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCC
Confidence 211 111223332222221112 366667666 999999987662221111111111 1455
Q ss_pred E---EEEEcCCCEEEEEE-C--------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCC-cEEEEeCCCCeEEEE
Q psy14258 360 V---IDYHEKEEYIYYAE-L--------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN-NLYWTDAGIGTINVA 426 (440)
Q Consensus 360 ~---l~~d~~~~~vy~~d-~--------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~-~lYwtd~~~~~I~~~ 426 (440)
| +++++.++++|++. . ..+.|..++.....+..-+..+ ..|.+|++...++ .||.++...+.|.++
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 4 99999999999953 2 3368999998765444444444 5899999999999 999999999999999
Q ss_pred EeCC
Q psy14258 427 KISD 430 (440)
Q Consensus 427 ~~~g 430 (440)
+...
T Consensus 328 D~~t 331 (352)
T TIGR02658 328 DAET 331 (352)
T ss_pred ECcC
Confidence 9865
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.31 E-value=2.2e-09 Score=105.14 Aligned_cols=232 Identities=15% Similarity=0.165 Sum_probs=144.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCC----------CCCcEEEEeC---CCCC-ceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGA----------TRPMLERSLL---DGTE-RFPMVTHKIVYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~----------~~~~I~r~~~---dG~~-~~~l~~~~~~~P~gl~vD~~~~~ly~~d 235 (440)
.+.+|++|++|+ .|.||+++... ...+|.+..- ||.- ..+++.+.+..|.||++. .++ ||+++
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G-lyV~~ 88 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG-VYVAT 88 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC-EEEeC
Confidence 379999999999 69999998521 1127877754 4442 335666778899999997 445 99986
Q ss_pred CCCCcEEEE-EccCC-----CcEEEecCCc------cCceeeeeEecC-EEEEEecCC-------------------CeE
Q psy14258 236 TYLDFIDRI-NYDGT-----DRKTIRKGFP------VQNLYDITVFEN-NLFVTSWRN-------------------QSI 283 (440)
Q Consensus 236 ~~~~~i~~~-~~dG~-----~~~~i~~~~~------~~~p~gl~~~~~-~ly~td~~~-------------------~~i 283 (440)
. ..|.++ +.+|. .++++..+-. ...+.++++..| .||+++... +.|
T Consensus 89 ~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 P--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 4 468777 34442 4455555311 233778998766 999987621 568
Q ss_pred EEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCC----CC-------------c
Q psy14258 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG----TT-------------E 346 (440)
Q Consensus 284 ~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~----~~-------------~ 346 (440)
+++++.+++...+..++..|.++.+. +++.|++++.......++..-..+ .+ .
T Consensus 167 ~r~~pdg~~~e~~a~G~rnp~Gl~~d----------~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~ 236 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGFQNPYGHSVD----------SWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGA 236 (367)
T ss_pred EEEecCCCeEEEEecCcCCCccceEC----------CCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccc
Confidence 88888655433333456678888776 345566666533333222211000 00 0
Q ss_pred eeee--------------ee---cCCCCceEEEEE-------cCCCEEEEEECCCCeEEEEecC--CCCe----EEEEEC
Q psy14258 347 QAIM--------------PI---TDLKRPSVIDYH-------EKEEYIYYAELTSYVIERRKMF--GRGK----EVVIDT 396 (440)
Q Consensus 347 ~~~~--------------~~---~~~~~p~~l~~d-------~~~~~vy~~d~~~~~I~r~~~~--g~~~----~~~~~~ 396 (440)
.... +. .....|.|++|- .-.+.+++++...+.|.++.++ |+.. +.++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~ 316 (367)
T TIGR02604 237 DHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRS 316 (367)
T ss_pred cccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccEeecCceEec
Confidence 0000 01 112367888876 3457899999999999999986 4321 223332
Q ss_pred --CCCCeeeEEEecCCCcEEEEe
Q psy14258 397 --GIYNVEGMAVDWMANNLYWTD 417 (440)
Q Consensus 397 --~~~~~~glAvD~~~~~lYwtd 417 (440)
....|..+++++.+ .||++|
T Consensus 317 ~~~~~rp~dv~~~pDG-~Lyv~d 338 (367)
T TIGR02604 317 NDTWFRPVNVTVGPDG-ALYVSD 338 (367)
T ss_pred CCCcccccceeECCCC-CEEEEE
Confidence 12579999999865 599999
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=7.2e-09 Score=101.91 Aligned_cols=267 Identities=11% Similarity=0.075 Sum_probs=179.9
Q ss_pred ccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC
Q psy14258 133 LLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 207 (440)
Q Consensus 133 ~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~ 207 (440)
...|.+ +++..+.++|++ +.+...+............+...|.++++++...++|.++... ..|...+.+...
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~--~~v~vid~~~~~ 107 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS--NTVSVIDTATNT 107 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC--CeEEEEcCcccc
Confidence 348999 999999999999 3344443331111222222337899999999989999999876 488888855443
Q ss_pred ceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcE-EEecCCccCceeeeeEecC--EEEEEecCCCe
Q psy14258 208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRK-TIRKGFPVQNLYDITVFEN--NLFVTSWRNQS 282 (440)
Q Consensus 208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~-~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~ 282 (440)
........ ..|.++++|+.++.+|+++.. .+.+..++....... .+..+ ..|.++++..+ .+|.++..++.
T Consensus 108 ~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG---~~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 108 VLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG---NTPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC---CCcceEEECCCCCeEEEEecCCCe
Confidence 33222222 279999999999999999994 688888886644332 22223 36899998754 89999988999
Q ss_pred EEEEeccCCCceE-----EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCc--cEEEEEEcCCCCCCceeeeeecCC
Q psy14258 283 IIRVNKFNSDDYE-----TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKP--AIIKGLTFKRDGTTEQAIMPITDL 355 (440)
Q Consensus 283 i~~~~~~~g~~~~-----~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~--~~I~~i~~~~~~~~~~~~~~~~~~ 355 (440)
|..++..+..... .+.....|.++.+.. ...++|+++... +.+.+++.... .-.....++...
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~---------~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~~~~~ 253 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP---------DGNRVYVANDGSGSNNVLKIDTATG-NVTATDLPVGSG 253 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECC---------CCCEEEEEeccCCCceEEEEeCCCc-eEEEeccccccC
Confidence 9988853322221 133344677777762 236688887765 58888887665 222223455666
Q ss_pred CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCC---CCeeeEEEecCCCcEEEE
Q psy14258 356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGI---YNVEGMAVDWMANNLYWT 416 (440)
Q Consensus 356 ~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~---~~~~glAvD~~~~~lYwt 416 (440)
.|.+++++|.+..+|+++...+.++.++.........+..+. ..|..+++-......|.+
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYDTNYVS 316 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeecccccce
Confidence 899999999999999999999999999888755554444332 236666655444333333
No 25
>KOG4659|consensus
Probab=99.21 E-value=2.7e-09 Score=111.51 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=172.5
Q ss_pred cCCcEEEe---ceEEEEecCCceEEEEEc--------CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 143 VTHKIVYP---EAIYFCTHYMEHCMIAID--------LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 143 ~~~~lY~~---~~I~~~~~dg~~~~~~~~--------~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
.+++.|.+ ..|.-.-.||..+.+-+. ..|-.|.++|.-| .|.||+-|.+ -|.|...||..+.++
T Consensus 325 nG~n~~it~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~-DGSl~VGDfN----yIRRI~~dg~v~tIl 399 (1899)
T KOG4659|consen 325 NGGNRLITEEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAP-DGSLIVGDFN----YIRRISQDGQVSTIL 399 (1899)
T ss_pred CCcceEeecCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcC-CCcEEEccch----heeeecCCCceEEEE
Confidence 45677877 334445556655443332 2466899999998 7999999876 899999999887765
Q ss_pred Eec--CccCceEEEEeCCCCEEEEEeCCCCcEEEEE-ccCCC----cEEEec-C------------------CccCceee
Q psy14258 212 VTH--KIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN-YDGTD----RKTIRK-G------------------FPVQNLYD 265 (440)
Q Consensus 212 ~~~--~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~----~~~i~~-~------------------~~~~~p~g 265 (440)
-.. ...+-.-||+||..+.||++|....+|+++. +.+++ -+++.- + ..+..|.|
T Consensus 400 ~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkG 479 (1899)
T KOG4659|consen 400 TLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKG 479 (1899)
T ss_pred EecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCc
Confidence 432 3445568999999999999999999999987 22222 222221 1 23668999
Q ss_pred eeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC---CCe----EEEEec-cCCCCCCC--CC-ceeEEeecCCccE
Q psy14258 266 ITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS---RPF----AIHIYH-RQKQPDAL--KP-STFLLYAKGKPAI 333 (440)
Q Consensus 266 l~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~---~p~----~~~v~~-~~~qp~~~--~~-~~~l~~~~~~~~~ 333 (440)
|+++.+ .||++|. ..|.+++. +|--.+++.... +|. .+++.. ....|... +| ++.|++-|. +.
T Consensus 480 Ia~dk~g~lYfaD~--t~IR~iD~-~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nv 554 (1899)
T KOG4659|consen 480 IAFDKMGNLYFADG--TRIRVIDT-TGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NV 554 (1899)
T ss_pred eeEccCCcEEEecc--cEEEEecc-CceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ce
Confidence 999975 9999995 45667775 332222222111 111 011111 11112221 12 477888877 77
Q ss_pred EEEEEcCCC-----CCCceeeee-----------ecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--
Q psy14258 334 IKGLTFKRD-----GTTEQAIMP-----------ITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-- 395 (440)
Q Consensus 334 I~~i~~~~~-----~~~~~~~~~-----------~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-- 395 (440)
|.+|+.++. +.+....++ -..+..|++|++.. .|.||++++...+|.|+..-+++.+.-+.
T Consensus 555 vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD~rriNrvr~~~tdg~i~ilaG 633 (1899)
T KOG4659|consen 555 VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESDGRRINRVRKLSTDGTISILAG 633 (1899)
T ss_pred EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEeccchhhhheEEeccCceEEEecC
Confidence 777776654 111110111 01233578999987 47799999888777777665544333221
Q ss_pred -------------------------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258 396 -------------------------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427 (440)
Q Consensus 396 -------------------------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~ 427 (440)
+.++.|..|||-+ .+.+|++|.++-+|..++
T Consensus 634 a~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP-dg~v~IAD~gN~rIr~Vs 689 (1899)
T KOG4659|consen 634 AKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP-DGDVIIADSGNSRIRKVS 689 (1899)
T ss_pred CCCCCCcccccCCccccccchhhhccccCCcceEEECC-CCcEEEecCCchhhhhhh
Confidence 2346799999998 456999999988876553
No 26
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.5e-06 Score=80.67 Aligned_cols=277 Identities=14% Similarity=0.040 Sum_probs=176.2
Q ss_pred cEEEEEEcC---CCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe------ceEEEEecCCc-
Q psy14258 93 HCMIAIDLN---LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP------EAIYFCTHYME- 161 (440)
Q Consensus 93 ~~ly~~d~~---~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~------~~I~~~~~dg~- 161 (440)
..+|+.... +..|++..++....+- ..+.+.....+|.= |+++..+.||.. +.|..+..|..
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l-------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~ 75 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGEL-------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD 75 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCccccc-------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC
Confidence 457777766 7778888887443221 12234567889999 999999999998 56777777653
Q ss_pred eEEEEEcC---CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEe---cC--------ccCceEEEEe
Q psy14258 162 HCMIAIDL---NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVT---HK--------IVYPYGVTVD 225 (440)
Q Consensus 162 ~~~~~~~~---~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~---~~--------~~~P~gl~vD 225 (440)
.+-+++.. ....|.-+++|+.+.+||.++... +.|.+..+ ||+-...+-. .. -.++...-++
T Consensus 76 G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~--g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 76 GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHS--GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred CeEEEeeccccCCCCCeEEEECCCCCEEEEEEccC--ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 22233332 235569999999888999999886 45555544 6665443211 11 1235566778
Q ss_pred CCCCEEEEEeCCCCcEEEEEccCCCcEEEec--CCccCceeeeeEecC--EEEEEecCCCeEEEE--eccCCCceE--EE
Q psy14258 226 FPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--GFPVQNLYDITVFEN--NLFVTSWRNQSIIRV--NKFNSDDYE--TI 297 (440)
Q Consensus 226 ~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~--~~~~g~~~~--~~ 297 (440)
|.++.|+.+|-+.++|...+++-+..+.... -..-..|.-|++..+ ..|...-=+++|... +...|+..+ .+
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 8899999999999999999986333322211 012356888888754 888877656665544 333233222 22
Q ss_pred ecC----CC---CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-CCCCceEEEEEcCCCE
Q psy14258 298 ANF----SR---PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-DLKRPSVIDYHEKEEY 369 (440)
Q Consensus 298 ~~~----~~---p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~~~~p~~l~~d~~~~~ 369 (440)
..+ .. ..+|++.+ ...|||+++.+...|..+.++..+..-......+ ...-|++..+++.++.
T Consensus 234 ~tlP~dF~g~~~~aaIhis~---------dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISP---------DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred ccCccccCCCCceeEEEECC---------CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 222 21 22344442 2379999998877776666655521111111112 2335999999999999
Q ss_pred EEEEECCCCeEEEEecCC
Q psy14258 370 IYYAELTSYVIERRKMFG 387 (440)
Q Consensus 370 vy~~d~~~~~I~r~~~~g 387 (440)
|+.+...++.|..+..|.
T Consensus 305 Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 305 LIAANQKSDNITVFERDK 322 (346)
T ss_pred EEEEccCCCcEEEEEEcC
Confidence 999988888777777664
No 27
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.05 E-value=1e-09 Score=70.91 Aligned_cols=41 Identities=34% Similarity=0.652 Sum_probs=39.3
Q ss_pred CEEEEEECCCC-eEEEEecCCCCeEEEEECCCCCeeeEEEec
Q psy14258 368 EYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYNVEGMAVDW 408 (440)
Q Consensus 368 ~~vy~~d~~~~-~I~r~~~~g~~~~~~~~~~~~~~~glAvD~ 408 (440)
++|||+|...+ +|.+++++|+++++++..++..|+||||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 57999999999 999999999999999999999999999997
No 28
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.04 E-value=2.6e-07 Score=82.65 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=186.2
Q ss_pred ccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCC
Q psy14258 131 RSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG 205 (440)
Q Consensus 131 ~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG 205 (440)
.....|.. |.++.+- ++++ +.|-+.+......++.--..-..|++|.++| .|..+++|.+. .|.|.+..-
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~---aI~R~dpkt 133 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL---AIGRLDPKT 133 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc---eeEEecCcc
Confidence 34557888 8887665 5555 6788877765554444333457899999999 69999999873 788877633
Q ss_pred CCceeEEe--c-CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCC
Q psy14258 206 TERFPMVT--H-KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ 281 (440)
Q Consensus 206 ~~~~~l~~--~-~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~ 281 (440)
-..+.+-. + ....-+-..+| ..++|+++.. .+.--+.|..-..+++.... .-..|+||.+..+ .+|++....+
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD-~~G~lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFD-PWGNLWFTGQ-IGAYGRLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cceEEeecccccCCCcccceeeC-CCccEEEeec-cccceecCcccCceeeeccC-CCCCCcceEECCCCcEEEEecccc
Confidence 22222211 1 11223446788 7788888864 44444555444445555443 2567999999866 9999999999
Q ss_pred eEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC-CceE
Q psy14258 282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK-RPSV 360 (440)
Q Consensus 282 ~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~-~p~~ 360 (440)
.|.++|.+++....+.. |.+++.-.+..- .++-+.+..++...+++++++.... ... ..++.+.+ +|..
T Consensus 211 aiaridp~~~~aev~p~----P~~~~~gsRriw---sdpig~~wittwg~g~l~rfdPs~~-sW~--eypLPgs~arpys 280 (353)
T COG4257 211 AIARIDPFAGHAEVVPQ----PNALKAGSRRIW---SDPIGRAWITTWGTGSLHRFDPSVT-SWI--EYPLPGSKARPYS 280 (353)
T ss_pred ceEEcccccCCcceecC----CCcccccccccc---cCccCcEEEeccCCceeeEeCcccc-cce--eeeCCCCCCCcce
Confidence 99999999884443332 333222111110 0233567777777788888887666 322 34555543 7888
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258 361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI 428 (440)
Q Consensus 361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~ 428 (440)
+-+|.. ++|+.+|...+.|-|++...... +++...-.++..+++|...+.|+.++.+...+.+++.
T Consensus 281 ~rVD~~-grVW~sea~agai~rfdpeta~f-tv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 281 MRVDRH-GRVWLSEADAGAIGRFDPETARF-TVLPIPRPNSGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred eeeccC-CcEEeeccccCceeecCcccceE-EEecCCCCCCCceeccCCCCceeecccCcceeEEEEe
Confidence 989874 66988999999999999986543 3434344667789999999999999999888887764
No 29
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.04 E-value=7.1e-10 Score=71.62 Aligned_cols=42 Identities=33% Similarity=0.801 Sum_probs=39.1
Q ss_pred CeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258 184 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226 (440)
Q Consensus 184 g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~ 226 (440)
++|||||++.. ++|+++++||+++++++...+.+|.|||||+
T Consensus 1 ~~iYWtD~~~~-~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQD-PSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTT-EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCC-cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 68999999985 5999999999999999999999999999984
No 30
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.04 E-value=2.8e-07 Score=88.86 Aligned_cols=261 Identities=16% Similarity=0.142 Sum_probs=148.1
Q ss_pred ccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEc------CCCCCceEEEEcC---CCCeEEEEEcCC------
Q psy14258 133 LLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAID------LNLSKPRGIALDP---TSGYMFFTKWGA------ 193 (440)
Q Consensus 133 ~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~------~~~~~P~~iavd~---~~g~lywtd~~~------ 193 (440)
+..|.+ |+.+. +.||++ ++|.+.+.+|.....+.. .....+.|||++| .+++||+.-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCC-CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457999 99988 568999 899999988877333322 2345689999999 368888775421
Q ss_pred CCCcEEEEeCCCC-----CceeEEec------CccCceEEEEeCCCCEEEEEeC-------------CCCcEEEEEccCC
Q psy14258 194 TRPMLERSLLDGT-----ERFPMVTH------KIVYPYGVTVDFPTKHVYWVDT-------------YLDFIDRINYDGT 249 (440)
Q Consensus 194 ~~~~I~r~~~dG~-----~~~~l~~~------~~~~P~gl~vD~~~~~ly~~d~-------------~~~~i~~~~~dG~ 249 (440)
...+|.|..++.. ..++++.. ....-.+|++++ .++||++-. ..++|.+++.||+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~ 158 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS 158 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCc
Confidence 1237888888655 23334322 233456799996 559999842 2348999999987
Q ss_pred -------------CcEEEecCCccCceeeeeEec--CEEEEEecCCCeEEEEeccC-CCceEEEecCCCCeEEEEeccCC
Q psy14258 250 -------------DRKTIRKGFPVQNLYDITVFE--NNLFVTSWRNQSIIRVNKFN-SDDYETIANFSRPFAIHIYHRQK 313 (440)
Q Consensus 250 -------------~~~~i~~~~~~~~p~gl~~~~--~~ly~td~~~~~i~~~~~~~-g~~~~~~~~~~~p~~~~v~~~~~ 313 (440)
..++...+ +++|++++++. +.||.+|.+....-.++... |+ +...|.--. ..
T Consensus 159 ~p~dnP~~~~~~~~~~i~A~G--lRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~------nYGWP~~~~----~~ 226 (331)
T PF07995_consen 159 IPADNPFVGDDGADSEIYAYG--LRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGG------NYGWPYCEG----GP 226 (331)
T ss_dssp B-TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-------B--TTTBSS----SC
T ss_pred CCCCCccccCCCceEEEEEeC--CCccccEEEECCCCcEEEEccCCCCCcEEEEeccCC------cCCCCCCcC----CC
Confidence 45566666 89999999996 49999886543322222110 11 011111000 00
Q ss_pred CCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc------CCCEEEEEECCCCeEEEEecCC
Q psy14258 314 QPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE------KEEYIYYAELTSYVIERRKMFG 387 (440)
Q Consensus 314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~------~~~~vy~~d~~~~~I~r~~~~g 387 (440)
.+. +. ...+. .... ..............|.|+.|-. -.+.+++++...++|+++.++.
T Consensus 227 ~~~-----~~-~~~~~---------~~~~-~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~ 290 (331)
T PF07995_consen 227 KYS-----GP-PIGDA---------PSCP-GFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDE 290 (331)
T ss_dssp STT-----SS--ECTG---------SS-T-TS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred CCC-----CC-ccccc---------cCCC-CcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeec
Confidence 000 00 00000 0000 0000011111223566666542 2567999999999999999974
Q ss_pred CC----eEEEEECCCC-CeeeEEEecCCCcEEEEeCCCCeEEE
Q psy14258 388 RG----KEVVIDTGIY-NVEGMAVDWMANNLYWTDAGIGTINV 425 (440)
Q Consensus 388 ~~----~~~~~~~~~~-~~~glAvD~~~~~lYwtd~~~~~I~~ 425 (440)
.. .+.++ .+.. .|.+|++++. |.||+++...++|.+
T Consensus 291 ~~~~~~~~~~~-~~~~~r~~~v~~~pD-G~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 291 DGSVTEEEEFL-GGFGGRPRDVAQGPD-GALYVSDDSDGKIYR 331 (331)
T ss_dssp TEEEEEEEEEC-TTSSS-EEEEEEETT-SEEEEEE-TTTTEEE
T ss_pred CCCccceEEcc-ccCCCCceEEEEcCC-CeEEEEECCCCeEeC
Confidence 32 22222 3445 7999999985 689999888888764
No 31
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.02 E-value=4.2e-06 Score=81.78 Aligned_cols=316 Identities=10% Similarity=0.026 Sum_probs=174.0
Q ss_pred cEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccccc-ce-eeeecCCcEEEe---ceEEEEecCCceEEEEE
Q psy14258 93 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAI 167 (440)
Q Consensus 93 ~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p-~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~ 167 (440)
+.+|+++...+++..++. ...+.+ . .+.. ...+ .+ ++.+.++.+|++ +.|.+.++.......-+
T Consensus 6 ~l~~V~~~~~~~v~viD~--~t~~~~------~--~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i 74 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG--ATNKVV------A--RIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI 74 (369)
T ss_dssp GEEEEEEGGGTEEEEEET--TT-SEE------E--EEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE
T ss_pred cEEEEEecCCCEEEEEEC--CCCeEE------E--EEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE
Confidence 456677877777655443 222211 0 1222 2233 44 677888999999 78999998765543223
Q ss_pred cCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-------ccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258 168 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-------IVYPYGVTVDFPTKHVYWVDTYLDF 240 (440)
Q Consensus 168 ~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-------~~~P~gl~vD~~~~~ly~~d~~~~~ 240 (440)
..+ ..|+++++.+...++|.+++.. +.+...+...-.....+... -.++.+|.-.+.....+++-...+.
T Consensus 75 ~~G-~~~~~i~~s~DG~~~~v~n~~~--~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~ 151 (369)
T PF02239_consen 75 KVG-GNPRGIAVSPDGKYVYVANYEP--GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE 151 (369)
T ss_dssp E-S-SEEEEEEE--TTTEEEEEEEET--TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred ecC-CCcceEEEcCCCCEEEEEecCC--CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence 323 4799999999888999999876 47777765433222222211 1245567666566656667777899
Q ss_pred EEEEEccCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCe---EEEEeccCCCC
Q psy14258 241 IDRINYDGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF---AIHIYHRQKQP 315 (440)
Q Consensus 241 i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~---~~~v~~~~~qp 315 (440)
|..+++.......+..-..-..|++..++.+ +++.+....+.|..++..+++....+.....|. +..+.|+..
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~-- 229 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF-- 229 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--
T ss_pred EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--
Confidence 9999986543222211011357888888765 778888888899999987766555444333332 233455332
Q ss_pred CCCCCceeEEeecCC-ccEEEEEEcCCCC----CCceeeeeecCCCCceEEEEEcCCCEEEEE---ECCCCeEEEEecCC
Q psy14258 316 DALKPSTFLLYAKGK-PAIIKGLTFKRDG----TTEQAIMPITDLKRPSVIDYHEKEEYIYYA---ELTSYVIERRKMFG 387 (440)
Q Consensus 316 ~~~~~~~~l~~~~~~-~~~I~~i~~~~~~----~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~---d~~~~~I~r~~~~g 387 (440)
+-+..+... ...+..+..+... ........+.....|..+..+|.+.+||+. +...++|..++...
T Consensus 230 ------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 230 ------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp ------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ------ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 112222211 1223333332221 111233334434456889999999999887 45678899998875
Q ss_pred CCeEEEEE--CCC-CCeeeEEEecCCCcEEEEeCCCC-eEEEEEeCCCe
Q psy14258 388 RGKEVVID--TGI-YNVEGMAVDWMANNLYWTDAGIG-TINVAKISDFS 432 (440)
Q Consensus 388 ~~~~~~~~--~~~-~~~~glAvD~~~~~lYwtd~~~~-~I~~~~~~g~~ 432 (440)
- +++.. .+- ..+..+.+...++.+|++....+ +|.+++....+
T Consensus 304 l--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 304 L--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp T--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred c--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 3 33322 111 13889999999999999998887 99999987633
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.98 E-value=3.2e-06 Score=82.58 Aligned_cols=324 Identities=9% Similarity=-0.033 Sum_probs=174.7
Q ss_pred eEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccc
Q psy14258 48 THLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRP 127 (440)
Q Consensus 48 ~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v 127 (440)
+++++.+.. ++|..++.......-.++....-..++.+.+.++++|.++.+ +.|..+++.... .+ ..
T Consensus 7 l~~V~~~~~---~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd-g~vsviD~~~~~--~v------~~- 73 (369)
T PF02239_consen 7 LFYVVERGS---GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD-GTVSVIDLATGK--VV------AT- 73 (369)
T ss_dssp EEEEEEGGG---TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT-SEEEEEETTSSS--EE------EE-
T ss_pred EEEEEecCC---CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC-CeEEEEECCccc--EE------EE-
Confidence 344555443 448888887665553444322213457788888999999864 677776665332 11 11
Q ss_pred eeeccccccce-eeeecCCcEEEe----ceEEEEecCCceE-EEEEcCCC------CCceEEEEcCCCCeEEEEEcCCCC
Q psy14258 128 MLERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHC-MIAIDLNL------SKPRGIALDPTSGYMFFTKWGATR 195 (440)
Q Consensus 128 ~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~-~~~~~~~~------~~P~~iavd~~~g~lywtd~~~~~ 195 (440)
+ .....|.+ |+.+.++.+|++ +.+.+.+...-.. +.+-.... ..+.+|...|. +..|+......
T Consensus 74 -i-~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~-~~~fVv~lkd~- 149 (369)
T PF02239_consen 74 -I-KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG-RPEFVVNLKDT- 149 (369)
T ss_dssp -E-E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS-SSEEEEEETTT-
T ss_pred -E-ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC-CCEEEEEEccC-
Confidence 2 33457999 999999999988 7888887655333 33322211 23457766664 45455554443
Q ss_pred CcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeee--EecC
Q psy14258 196 PMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDIT--VFEN 271 (440)
Q Consensus 196 ~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~--~~~~ 271 (440)
++|+..+........... ..-..|.+..+|+.+.++|.+....+.|-.++........+.. +. ..+|..++ .+-+
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~-~p~~~~~~~~php~ 228 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK-KPHPGPGANFPHPG 228 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS-SBEETTEEEEEETT
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc-cccccccccccCCC
Confidence 799999976543222211 1245799999998888888888888899999876554443333 32 44543333 2222
Q ss_pred -EEEEEecCC--CeEEEEe--------ccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEee---cCCccEEEE
Q psy14258 272 -NLFVTSWRN--QSIIRVN--------KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYA---KGKPAIIKG 336 (440)
Q Consensus 272 -~ly~td~~~--~~i~~~~--------~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~---~~~~~~I~~ 336 (440)
-.+|+.... ..+-.+. ..+-+....+.....|..++. | |+ .+|++. ......|..
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t-h---------P~s~~vwvd~~~~~~~~~v~v 298 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT-H---------PDSRYVWVDTFLNPDADTVQV 298 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE------------TT-SEEEEE-TT-SSHT-EEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec-C---------CCCccEEeeccCCCCCceEEE
Confidence 344543322 1111121 112222333333333433322 2 34 566665 233567888
Q ss_pred EEcCCCCCCceeeeeecCC--CCceEEEEEcCCCEEEEEECCCC-eEEEEecCCCCeEEEEECCCCCeeeEE
Q psy14258 337 LTFKRDGTTEQAIMPITDL--KRPSVIDYHEKEEYIYYAELTSY-VIERRKMFGRGKEVVIDTGIYNVEGMA 405 (440)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~--~~p~~l~~d~~~~~vy~~d~~~~-~I~r~~~~g~~~~~~~~~~~~~~~glA 405 (440)
|+.... +....+... ..+.-++|++++.++|++....+ .|..++...-.....+. +..|.|+-
T Consensus 299 iD~~tl----~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f 364 (369)
T PF02239_consen 299 IDKKTL----KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF 364 (369)
T ss_dssp EECCGT----EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred EECcCc----ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence 887665 444444321 23778999999999999998887 99999888654433344 67898875
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.95 E-value=2.3e-07 Score=84.68 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=115.3
Q ss_pred eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-----ceEEE
Q psy14258 82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAIYF 155 (440)
Q Consensus 82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I~~ 155 (440)
++.||+|++.+++||-.....+.|+.++++|.-++. +.+ .++..++| ++ +++..|+. +++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~---------i~l-~g~~D~EgI~y--~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR---------IPL-DGFGDYEGITY--LGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE---------EE--SS-SSEEEEEE---STTEEEEEETTTTEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE---------EeC-CCCCCceeEEE--ECCCEEEEEEcCCCcEEE
Confidence 399999999999999998888888888776543322 223 45778888 76 56667776 56666
Q ss_pred EecC--Cce--E---EEEE-c-C--CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEe-------cC
Q psy14258 156 CTHY--MEH--C---MIAI-D-L--NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVT-------HK 215 (440)
Q Consensus 156 ~~~d--g~~--~---~~~~-~-~--~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~-------~~ 215 (440)
...+ +.. . +.+- . . .-....|||.||.++.||.+..... .+|...+. .+........ ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccce
Confidence 6652 221 1 1111 1 1 1123799999999999999876542 35777766 2222222211 12
Q ss_pred ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--C-----CccCceeeeeEecC-EEEEEecCCCeEEE
Q psy14258 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--G-----FPVQNLYDITVFEN-NLFVTSWRNQSIIR 285 (440)
Q Consensus 216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~-----~~~~~p~gl~~~~~-~ly~td~~~~~i~~ 285 (440)
+..|.++++|+.++.||+-.....+|..++.+|.-+..+.- + ..+++|.||+++.+ .||++.-. +..++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~ 246 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYR 246 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEE
Confidence 55799999999999999999999999999988875554432 1 23578999999976 99998853 34444
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.94 E-value=9.2e-07 Score=80.79 Aligned_cols=200 Identities=16% Similarity=0.103 Sum_probs=115.2
Q ss_pred cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCC-Cce
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNS-DDY 294 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g-~~~ 294 (440)
..++|||.++.+++||.+..+...|..++.+|.-.+.+.-. .+..|.||++-++ .+..++-..+.++.+..... +..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~-g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLD-GFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-S-S-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCC-CCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 34899999999999999998999999999998776666543 2778999999876 55666766777777765322 111
Q ss_pred E-----EEe-cCC-----CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee--ee----ecCCCC
Q psy14258 295 E-----TIA-NFS-----RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI--MP----ITDLKR 357 (440)
Q Consensus 295 ~-----~~~-~~~-----~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~--~~----~~~~~~ 357 (440)
. .+. ... ..-|++... . .+.++++-...+..|+.+........-... .. ......
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~-~-------~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDP-K-------TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEET-T-------TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred chhhceEEecccccCCCcceEEEEEcC-C-------CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 1 111 111 123444331 1 123444444445677777752210110000 01 113447
Q ss_pred ceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CC-------CCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258 358 PSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TG-------IYNVEGMAVDWMANNLYWTDAGIGTINVAK 427 (440)
Q Consensus 358 p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~-------~~~~~glAvD~~~~~lYwtd~~~~~I~~~~ 427 (440)
|++++||+..+.+|+-+..+..|..++.+|.......- .+ +..|+|||+|. .|+||++.- -|...+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f~ 248 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRFE 248 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEeC
Confidence 89999999999999999999999999999865444432 22 45799999996 679999975 45666653
No 35
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.88 E-value=3.1e-06 Score=83.63 Aligned_cols=278 Identities=12% Similarity=-0.035 Sum_probs=162.4
Q ss_pred cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeec------CCcEEEe
Q psy14258 78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMV------THKIVYP 150 (440)
Q Consensus 78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~------~~~lY~~ 150 (440)
+.. |.+|++.+. +++|++....++|+++...+.....+ ...+.+....+...+-+ |+++. ++.||++
T Consensus 29 L~~--Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~---~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 29 LNK--PWALLWGPD-NQLWVTERATGKILRVNPETGEVKVV---FTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred CCC--ceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeee---ecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 555 999999986 68999998778888876443221111 11122211124567888 99854 4679987
Q ss_pred -------------ceEEEEecCCc-----eEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCC---------------
Q psy14258 151 -------------EAIYFCTHYME-----HCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGA--------------- 193 (440)
Q Consensus 151 -------------~~I~~~~~dg~-----~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~--------------- 193 (440)
.+|.|..++.. ..++|+.. ..+.-..|+++| .|+||++--..
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhc
Confidence 25777776531 23444431 224567899999 68999984322
Q ss_pred ---------------CCCcEEEEeCCCCC----------ceeEEecCccCceEEEEeCCCCEEEEEeCCCC---cEEEEE
Q psy14258 194 ---------------TRPMLERSLLDGTE----------RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD---FIDRIN 245 (440)
Q Consensus 194 ---------------~~~~I~r~~~dG~~----------~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~---~i~~~~ 245 (440)
..++|.|.+.||+. +.++..-.++.|.||++|+ +++||.+|.+.+ .|..+.
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNSDDELNIIV 260 (454)
T ss_pred cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCCCcEEEEec
Confidence 12479999999973 3467777899999999997 899999998764 333332
Q ss_pred ccCCCcEEEecCCccCcee--eeeEecCEE-------------------------------------------EEEecCC
Q psy14258 246 YDGTDRKTIRKGFPVQNLY--DITVFENNL-------------------------------------------FVTSWRN 280 (440)
Q Consensus 246 ~dG~~~~~i~~~~~~~~p~--gl~~~~~~l-------------------------------------------y~td~~~ 280 (440)
.+.....|. |......+. ||+-...
T Consensus 261 ----------~G~NYGWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~ 330 (454)
T TIGR03606 261 ----------KGGNYGWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDT 330 (454)
T ss_pred ----------cCCcCCCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccc
Confidence 111122222 110000000 2210000
Q ss_pred CeEEEEeccCCCceEEE--ecCCCCeEEEEec--cCCCCCCCCCceeEEeecCCccEEEEEEcCCCC-CC-ceeeeeecC
Q psy14258 281 QSIIRVNKFNSDDYETI--ANFSRPFAIHIYH--RQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG-TT-EQAIMPITD 354 (440)
Q Consensus 281 ~~i~~~~~~~g~~~~~~--~~~~~p~~~~v~~--~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~-~~-~~~~~~~~~ 354 (440)
-.+ -+-..++ . .. .....|.++.+|. ...-|. -++.|+++..+...++|+.+++.. .. .+....+..
T Consensus 331 -~~~-~~~~~~~-~-~~~~~psiapsg~~~y~~~g~~~p~---w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~ 403 (454)
T TIGR03606 331 -YNY-NDATCGE-M-TYICWPTIAPSSAYYYKGGEKGITG---WENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT 403 (454)
T ss_pred -ccc-ccccccc-c-ccccCCCcCCceeEEEecCcccCcc---cCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC
Confidence 000 0000000 0 01 1222577888885 233332 357788887777899999998662 11 122223333
Q ss_pred CCCceEEEEEcCCCEEEEEECCCCeE
Q psy14258 355 LKRPSVIDYHEKEEYIYYAELTSYVI 380 (440)
Q Consensus 355 ~~~p~~l~~d~~~~~vy~~d~~~~~I 380 (440)
..+.+.|+..|+++.||+.....+.+
T Consensus 404 ~~RiRdv~~~pDg~~iy~~td~~g~~ 429 (454)
T TIGR03606 404 NNRYRDVIASPDGNVLYVATDNFGNV 429 (454)
T ss_pred CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence 56889999999877999975455554
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.81 E-value=1.1e-05 Score=77.51 Aligned_cols=234 Identities=11% Similarity=0.092 Sum_probs=135.7
Q ss_pred CeEEEEEcCCC--CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC---------CCCcEEEEEcc-CCCc
Q psy14258 184 GYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT---------YLDFIDRINYD-GTDR 251 (440)
Q Consensus 184 g~lywtd~~~~--~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~---------~~~~i~~~~~d-G~~~ 251 (440)
.++|++|.... .++|.+.+.+.......+.. -..|.++ +.+.++.||++.. ..+.|..+|.. +...
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~-G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG-GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEc-cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 56888887620 14788888765443333332 3579997 9999999999999 78899999864 3333
Q ss_pred EEEecCC-----ccCceeeeeEe--cCEEEEEecC-CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258 252 KTIRKGF-----PVQNLYDITVF--ENNLFVTSWR-NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF 323 (440)
Q Consensus 252 ~~i~~~~-----~~~~p~gl~~~--~~~ly~td~~-~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~ 323 (440)
..+..+. ....|..+++. +.+||++++. .+.|..+|..+++....+.- |..-.+|-... ...+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v---p~~~~vy~t~e------~~~~ 161 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV---PDCYHIFPTAN------DTFF 161 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC---CCCcEEEEecC------CccE
Confidence 4443321 13345456655 4599999977 89999999987766553332 22222331110 0122
Q ss_pred EEeecCCccEEEEEEcCCCCCCceeeeeecC------CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE---
Q psy14258 324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITD------LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI--- 394 (440)
Q Consensus 324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~------~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~--- 394 (440)
++..| ++...+.++..+.......++-. +.+| .|.+.++..+|.... ++|+.+++.+...+...
T Consensus 162 ~~~~D---g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~ 234 (352)
T TIGR02658 162 MHCRD---GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIE 234 (352)
T ss_pred EEeec---CceEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceee
Confidence 23333 33444444444221112223211 2466 455534555565554 99999998764322111
Q ss_pred --ECCC----CCeee---EEEecCCCcEEEE-eCC--------CCeEEEEEeCCCeeeE
Q psy14258 395 --DTGI----YNVEG---MAVDWMANNLYWT-DAG--------IGTINVAKISDFSIRK 435 (440)
Q Consensus 395 --~~~~----~~~~g---lAvD~~~~~lYwt-d~~--------~~~I~~~~~~g~~~~~ 435 (440)
..+. =.|.| +|++..+++||++ +.. .+.|.+++....+..+
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 1110 13444 9999999999995 322 3689999987644333
No 37
>KOG1520|consensus
Probab=98.69 E-value=1.5e-06 Score=82.06 Aligned_cols=173 Identities=12% Similarity=0.016 Sum_probs=117.8
Q ss_pred ccEEEEEEcCCCCceeEEeCCCCCcceeeccccc--cceeeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEE
Q psy14258 92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--RPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMI 165 (440)
Q Consensus 92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~ 165 (440)
++-|+|+-...+.+-.+...-+.... .... ......--+.|-| |++..+++||++ --+++.+..|...+.
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~----~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~ 150 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRS----QCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAEL 150 (376)
T ss_pred CceEEEeccCceEEEEEecccccccc----ccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCccee
Confidence 35568887766666555542111111 0111 1112233579999 999999999999 568888998887655
Q ss_pred EEcCC----CCCceEEEEcCCCCeEEEEEcCCC---------------CCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258 166 AIDLN----LSKPRGIALDPTSGYMFFTKWGAT---------------RPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226 (440)
Q Consensus 166 ~~~~~----~~~P~~iavd~~~g~lywtd~~~~---------------~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~ 226 (440)
+.... .....++.||+ +|.+||||.... .+|+.+.+..-...++ +.+++..|||+++.+
T Consensus 151 l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~V-Lld~L~F~NGlaLS~ 228 (376)
T KOG1520|consen 151 LADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKV-LLDGLYFPNGLALSP 228 (376)
T ss_pred ccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhh-hhhcccccccccCCC
Confidence 54432 34567999999 899999996542 2455555554443333 345789999999999
Q ss_pred CCCEEEEEeCCCCcEEEEEccCCCc---EEEecCCccCceeeeeEecC
Q psy14258 227 PTKHVYWVDTYLDFIDRINYDGTDR---KTIRKGFPVQNLYDITVFEN 271 (440)
Q Consensus 227 ~~~~ly~~d~~~~~i~~~~~dG~~~---~~i~~~~~~~~p~gl~~~~~ 271 (440)
.+..+.+++....+|.++-+.|... +.+.++- -..|--|...++
T Consensus 229 d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L-PG~PDNIR~~~~ 275 (376)
T KOG1520|consen 229 DGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL-PGYPDNIRRDST 275 (376)
T ss_pred CCCEEEEEeeccceeeeeEecCCccCchhhHhhcC-CCCCcceeECCC
Confidence 9999999999999999999998776 5555531 246777776655
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.67 E-value=7.9e-06 Score=73.32 Aligned_cols=237 Identities=17% Similarity=0.106 Sum_probs=154.3
Q ss_pred CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc
Q psy14258 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR 251 (440)
Q Consensus 172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~ 251 (440)
..|..++.+| .|.+++++.+. +.|-+.+......+..--..-.+|.|+.++ ..+..+++|... .|.+++......
T Consensus 62 ~ap~dvapap-dG~VWft~qg~--gaiGhLdP~tGev~~ypLg~Ga~Phgiv~g-pdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGT--GAIGHLDPATGEVETYPLGSGASPHGIVVG-PDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCccccccCC-CCceEEecCcc--ccceecCCCCCceEEEecCCCCCCceEEEC-CCCCeeEecCcc-eeEEecCcccce
Confidence 5799999999 69999999886 588888876544444433446789999999 556788899776 888887643333
Q ss_pred EEEecCCccCce----eeeeEec-CEEEEEecCCCeEEEEeccCCCceEEE-ec-CCCCeEEEEeccCCCCCCCCCceeE
Q psy14258 252 KTIRKGFPVQNL----YDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETI-AN-FSRPFAIHIYHRQKQPDALKPSTFL 324 (440)
Q Consensus 252 ~~i~~~~~~~~p----~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~-~~-~~~p~~~~v~~~~~qp~~~~~~~~l 324 (440)
+..... ..++ ....++. ++|++|.. .+.--+.|...+. ..++ .. ...|+++.+- |++.+
T Consensus 137 t~f~lp--~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~-i~vfpaPqG~gpyGi~at----------pdGsv 202 (353)
T COG4257 137 TRFPLP--LEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNV-ISVFPAPQGGGPYGICAT----------PDGSV 202 (353)
T ss_pred EEeecc--cccCCCcccceeeCCCccEEEeec-cccceecCcccCc-eeeeccCCCCCCcceEEC----------CCCcE
Confidence 333221 2222 2233443 38888875 4444466665432 2232 22 2357777666 78899
Q ss_pred EeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeee
Q psy14258 325 LYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEG 403 (440)
Q Consensus 325 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~g 403 (440)
+|+..-.+.|-+|+.-.. ..+.+..|-.--..-+.+-.|+. ++++.++...++++|+++.-+. ++--+...-..|..
T Consensus 203 wyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpi-g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys 280 (353)
T COG4257 203 WYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPI-GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYS 280 (353)
T ss_pred EEEeccccceEEcccccC-CcceecCCCcccccccccccCcc-CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcce
Confidence 999655578888875443 33322222111123346667876 5699999999999999987543 22222222246899
Q ss_pred EEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 404 MAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 404 lAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
|-||- .++++..|.+.+.|.+++...
T Consensus 281 ~rVD~-~grVW~sea~agai~rfdpet 306 (353)
T COG4257 281 MRVDR-HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeecc-CCcEEeeccccCceeecCccc
Confidence 99995 556888899999999998875
No 39
>KOG1520|consensus
Probab=98.65 E-value=1.6e-06 Score=81.81 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=114.3
Q ss_pred ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec---CCccCceeeeeEec-CEEEEEecCCCeEEEEeccCC
Q psy14258 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK---GFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNS 291 (440)
Q Consensus 216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~---~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g 291 (440)
.++|-||+++..++.||+||+..+ +..++..|...+.+.. +..+....++.+.. +.|||||..+. ++-
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk-------~~~ 185 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSK-------YDR 185 (376)
T ss_pred cCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccc-------cch
Confidence 589999999999999999998775 8888888877555543 33455566788775 59999997531 111
Q ss_pred CceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEE
Q psy14258 292 DDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371 (440)
Q Consensus 292 ~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy 371 (440)
.... +.++.-...+++.+.+.... ...+.+.++.-|.|++..+++.++.
T Consensus 186 rd~~---------------------------~a~l~g~~~GRl~~YD~~tK----~~~VLld~L~F~NGlaLS~d~sfvl 234 (376)
T KOG1520|consen 186 RDFV---------------------------FAALEGDPTGRLFRYDPSTK----VTKVLLDGLYFPNGLALSPDGSFVL 234 (376)
T ss_pred hheE---------------------------EeeecCCCccceEEecCccc----chhhhhhcccccccccCCCCCCEEE
Confidence 0000 01111112367766666555 3445667788899999999999999
Q ss_pred EEECCCCeEEEEecCCCCe---EEEEECCCCCeeeEEEecCCCcEEEE
Q psy14258 372 YAELTSYVIERRKMFGRGK---EVVIDTGIYNVEGMAVDWMANNLYWT 416 (440)
Q Consensus 372 ~~d~~~~~I~r~~~~g~~~---~~~~~~~~~~~~glAvD~~~~~lYwt 416 (440)
++++...+|.|.-+.|... |++++.=-+.|+.|..|. .|+.|++
T Consensus 235 ~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~-~G~fWVa 281 (376)
T KOG1520|consen 235 VAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDS-TGHFWVA 281 (376)
T ss_pred EEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECC-CCCEEEE
Confidence 9999999999999998654 777662236899999995 5555554
No 40
>KOG4499|consensus
Probab=98.64 E-value=9.9e-06 Score=71.04 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=119.7
Q ss_pred EEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeecccccc--ce-eeeecCC-cEEEe---ceEEEE
Q psy14258 84 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG--TE-RFPMVTH-KIVYP---EAIYFC 156 (440)
Q Consensus 84 ~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p--~~-avD~~~~-~lY~~---~~I~~~ 156 (440)
.+..++..++.|||.|...+.+.|.++....... ..+..| .+ ++--.++ ..|.+ .+....
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~r-------------a~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~ 84 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYR-------------AKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIV 84 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEE-------------EEEecCcceeEEEEecCCCceEEEeecceEEEE
Confidence 4556788889999999998888776554322211 111111 11 2211111 23333 344455
Q ss_pred ecCCceEEEEEcCC---------CCCceEEEEcCCCCeEEEEEcCCC------CCcEEEEeCCCCCceeEEecCccCceE
Q psy14258 157 THYMEHCMIAIDLN---------LSKPRGIALDPTSGYMFFTKWGAT------RPMLERSLLDGTERFPMVTHKIVYPYG 221 (440)
Q Consensus 157 ~~dg~~~~~~~~~~---------~~~P~~iavd~~~g~lywtd~~~~------~~~I~r~~~dG~~~~~l~~~~~~~P~g 221 (440)
+.||.....++... -.+-..=-+|| .|+-|--..... .+...+..+-|-.. .++...+.-|||
T Consensus 85 nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~IsNg 162 (310)
T KOG4499|consen 85 NWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVGISNG 162 (310)
T ss_pred EcccccceeeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCc-eeeehhccCCcc
Confidence 67765433222211 12334556788 455565533221 12223333333332 344556788999
Q ss_pred EEEeCCCCEEEEEeCCCCcEEEEEcc--C---CCcEEEec---CC--ccCceeeeeEecC-EEEEEecCCCeEEEEeccC
Q psy14258 222 VTVDFPTKHVYWVDTYLDFIDRINYD--G---TDRKTIRK---GF--PVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN 290 (440)
Q Consensus 222 l~vD~~~~~ly~~d~~~~~i~~~~~d--G---~~~~~i~~---~~--~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~ 290 (440)
|+.|......|++|+.+-.|...++| + ++++.+.. .+ .-..|-|++++.+ +||++-|..++|+++++.+
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence 99999999999999999999777754 2 46666654 11 1345789999865 9999999999999999999
Q ss_pred CCceE
Q psy14258 291 SDDYE 295 (440)
Q Consensus 291 g~~~~ 295 (440)
|+-..
T Consensus 243 GK~L~ 247 (310)
T KOG4499|consen 243 GKILL 247 (310)
T ss_pred CcEEE
Confidence 98765
No 41
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=0.00011 Score=73.27 Aligned_cols=237 Identities=8% Similarity=0.017 Sum_probs=133.1
Q ss_pred eeecCCcEEEe-------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCe-EEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 140 FPMVTHKIVYP-------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGY-MFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 140 vD~~~~~lY~~-------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~-lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
.++.++.+|++ .+|.+++.||.+.+++.... .-..-...|...+ +|++......+.|++.++.+..++.+
T Consensus 151 ~~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l 228 (419)
T PRK04043 151 IDWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI 228 (419)
T ss_pred cCceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE
Confidence 34567888887 37999999999988776643 2234555665443 77776653227999999988777766
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEecc
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~ 289 (440)
.... .......+.+.+.+|.++.... ..|+.+++++...+.+.........-..+-++..||++....+
T Consensus 229 t~~~-g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g-------- 299 (419)
T PRK04043 229 ASSQ-GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG-------- 299 (419)
T ss_pred ecCC-CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC--------
Confidence 5422 2222345677787887765433 4788888777665555432111111112223445555432110
Q ss_pred CCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCE
Q psy14258 290 NSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEY 369 (440)
Q Consensus 290 ~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~ 369 (440)
...|+++++++. ... .+...+... .+++|+++.
T Consensus 300 -----------------------------------------~~~Iy~~dl~~g-~~~--rlt~~g~~~---~~~SPDG~~ 332 (419)
T PRK04043 300 -----------------------------------------YPNIFMKKLNSG-SVE--QVVFHGKNN---SSVSTYKNY 332 (419)
T ss_pred -----------------------------------------CceEEEEECCCC-CeE--eCccCCCcC---ceECCCCCE
Confidence 123333333332 000 000001111 245666666
Q ss_pred EEEEECCC--------CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258 370 IYYAELTS--------YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 370 vy~~d~~~--------~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l 437 (440)
|.++.... ..|+.+++++...+.+...+. -+..++.+.++.||++.. +...+..++++| ...+.|
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g-~~~~~l 407 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY-NKSFLF 407 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCC-CeeEEe
Confidence 65554322 478888887765555544322 234667777998988853 455699999999 444434
No 42
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.55 E-value=1.7e-07 Score=61.03 Aligned_cols=39 Identities=38% Similarity=0.871 Sum_probs=36.0
Q ss_pred EEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 392 VVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 392 ~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+++..++..|.|||+||.+++|||+|...+.|++++++|
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 345668899999999999999999999999999999999
No 43
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.49 E-value=0.00015 Score=73.02 Aligned_cols=235 Identities=10% Similarity=0.001 Sum_probs=131.0
Q ss_pred cCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258 143 VTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH 214 (440)
Q Consensus 143 ~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~ 214 (440)
.++-.|++ .+|.+++.+|.+.+.+... -......+..|...+|+|+........|+..++++...+.+...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~ 260 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRS-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF 260 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecC-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC
Confidence 35555665 2688889999887766542 23345677888777888876543236899999988766555332
Q ss_pred CccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEEEeccC
Q psy14258 215 KIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFN 290 (440)
Q Consensus 215 ~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~~~~~~ 290 (440)
. ......++.+.+.+|+++....+ .|+.+++++...+.+.... ......++ ++..|+++....+
T Consensus 261 ~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~--~~~~~p~wSpDG~~I~f~s~~~g--------- 328 (448)
T PRK04792 261 P-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR--AIDTEPSWHPDGKSLIFTSERGG--------- 328 (448)
T ss_pred C-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC--CCccceEECCCCCEEEEEECCCC---------
Confidence 2 12235678888888887643333 5777777766554443321 11111122 2223433321100
Q ss_pred CCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258 291 SDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI 370 (440)
Q Consensus 291 g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v 370 (440)
...|+.+++++. .. ..+...+ ......++.++++++
T Consensus 329 ----------------------------------------~~~Iy~~dl~~g-~~--~~Lt~~g-~~~~~~~~SpDG~~l 364 (448)
T PRK04792 329 ----------------------------------------KPQIYRVNLASG-KV--SRLTFEG-EQNLGGSITPDGRSM 364 (448)
T ss_pred ----------------------------------------CceEEEEECCCC-CE--EEEecCC-CCCcCeeECCCCCEE
Confidence 112333333222 00 0010011 112234678888899
Q ss_pred EEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258 371 YYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 371 y~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l 437 (440)
|++... ...|+++++++...+.+..... .+..++.+.++.|+++.. +...+.+++++| ...+.|
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l 432 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARL 432 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC
Confidence 888653 3478889988765544433222 223467777999988754 345688999999 444443
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.49 E-value=0.00057 Score=67.84 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=70.3
Q ss_pred EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE------ec-CccCceEEEEeCC------CCEE
Q psy14258 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV------TH-KIVYPYGVTVDFP------TKHV 231 (440)
Q Consensus 165 ~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~------~~-~~~~P~gl~vD~~------~~~l 231 (440)
.++.++|..|.+|++.| .|.||+++... ++|.+.+.++...+.+. .. ...-+.||++++. ++.|
T Consensus 23 ~~va~GL~~Pw~maflP-DG~llVtER~~--G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGP-DNQLWVTERAT--GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEECCCCCceEEEEcC-CCeEEEEEecC--CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 34456899999999999 68999999743 58999887654433221 11 2345789999854 4689
Q ss_pred EEEeCC---------CCcEEEEEccCC-----CcEEEecCC---ccCceeeeeEecC-EEEEEe
Q psy14258 232 YWVDTY---------LDFIDRINYDGT-----DRKTIRKGF---PVQNLYDITVFEN-NLFVTS 277 (440)
Q Consensus 232 y~~d~~---------~~~i~~~~~dG~-----~~~~i~~~~---~~~~p~gl~~~~~-~ly~td 277 (440)
|++-.. ..+|.++.++.. +.+.++.+. ..+.--.|++..| .||++-
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~ 163 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTI 163 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEE
Confidence 988522 457888887632 234454421 1122235666544 899864
No 45
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.44 E-value=5.3e-07 Score=58.65 Aligned_cols=42 Identities=36% Similarity=0.719 Sum_probs=36.9
Q ss_pred EEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER 208 (440)
Q Consensus 165 ~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~ 208 (440)
+++...+..|.|||+|+.+++|||+|+.. ..|++++++|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~--~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL--DVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCC--CEEEEEeCCCCCC
Confidence 34556889999999999999999999997 5999999999863
No 46
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00033 Score=70.31 Aligned_cols=236 Identities=11% Similarity=0.075 Sum_probs=132.6
Q ss_pred ecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258 142 MVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI 216 (440)
Q Consensus 142 ~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~ 216 (440)
|.++..|++ .+|..++.+|...+.+.... ..-...+..|...+|+++......+.|+..++++..++.+....
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~- 239 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK- 239 (427)
T ss_pred cccEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-
Confidence 346666666 46899999998877665422 33456788887778887765432368999999877665553222
Q ss_pred cCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEeccCCC
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVNKFNSD 292 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~~~~g~ 292 (440)
......++.+.+.+|+++-.. ...|+.++.++...+.+............+-++..|+++... ...|+.++..
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~--- 316 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS--- 316 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---
Confidence 233467788888888875433 336777777776655443321011101111122233332110 0111111110
Q ss_pred ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEE
Q psy14258 293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYY 372 (440)
Q Consensus 293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~ 372 (440)
+ +...++...+. .....++.++++.|++
T Consensus 317 ------------------------------------~--g~~~~lt~~g~--------------~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 317 ------------------------------------G--GAAQRVTFTGS--------------YNTSPRISPDGKLLAY 344 (427)
T ss_pred ------------------------------------C--CceEEEecCCC--------------CcCceEECCCCCEEEE
Confidence 0 11222221111 1123467777888887
Q ss_pred EECCC--CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258 373 AELTS--YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 373 ~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l 437 (440)
+.... ..|+..++++.....+... ...+..++.+.++.||++.. +...+.+++++| ...+.|
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l 410 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRL 410 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEe
Confidence 76433 3688888877555444432 23356788888998888853 345688889999 444444
No 47
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=0.00037 Score=69.99 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=133.9
Q ss_pred eeeecCCcEEEe---------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258 139 RFPMVTHKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF 209 (440)
Q Consensus 139 avD~~~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~ 209 (440)
...+.++.+|++ .+|.+++.+|...+.+.... ......+..|...+|+++......+.|++.++++...+
T Consensus 158 ~g~f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~ 236 (430)
T PRK00178 158 KGAFSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE 236 (430)
T ss_pred CccceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE
Confidence 344566667766 15888999998876665432 33467788887778877654433368999999877666
Q ss_pred eEEecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEE
Q psy14258 210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIR 285 (440)
Q Consensus 210 ~l~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~ 285 (440)
.+.... ......++.+.+++|+++-... ..|+.+++++...+.+.... ......++ +++.||++....+
T Consensus 237 ~l~~~~-g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~--~~~~~~~~spDg~~i~f~s~~~g---- 309 (430)
T PRK00178 237 QITNFE-GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP--AIDTEPFWGKDGRTLYFTSDRGG---- 309 (430)
T ss_pred EccCCC-CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC--CCcCCeEECCCCCEEEEEECCCC----
Confidence 554322 2223467787888888764333 36777887776555443321 01111111 2223433321100
Q ss_pred EeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEc
Q psy14258 286 VNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHE 365 (440)
Q Consensus 286 ~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~ 365 (440)
...|+.+++++. ... .+...+ ......++.+
T Consensus 310 ---------------------------------------------~~~iy~~d~~~g-~~~--~lt~~~-~~~~~~~~Sp 340 (430)
T PRK00178 310 ---------------------------------------------KPQIYKVNVNGG-RAE--RVTFVG-NYNARPRLSA 340 (430)
T ss_pred ---------------------------------------------CceEEEEECCCC-CEE--EeecCC-CCccceEECC
Confidence 012222222221 000 000000 1112345678
Q ss_pred CCCEEEEEECCC--CeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258 366 KEEYIYYAELTS--YVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 366 ~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l 437 (440)
.++.|+++.... ..|+.+++.+...+.+...+ ..+..++.+.++.|+++.. +...|..++++| ...+.|
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l 413 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPL 413 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEC
Confidence 888888886433 36888898876555544322 2334577788999999864 456799999999 434333
No 48
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.41 E-value=0.0016 Score=62.89 Aligned_cols=304 Identities=10% Similarity=-0.012 Sum_probs=161.1
Q ss_pred ccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEeceEEEEecCCceEEEEEcCCC
Q psy14258 92 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNL 171 (440)
Q Consensus 92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~~~I~~~~~dg~~~~~~~~~~~ 171 (440)
..-||+.+..++.+.|+..-|.....+.+-..+..+++.++...|-. .-..|| +.+.||...+.+ .+
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~----q~~~lY------kv~~dg~~~e~L---nl 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFS----QWTELY------KVNVDGIKTEPL---NL 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcc----cceeee------EEccCCceeeec---cC
Confidence 35589999999999998877765555544444455555555655542 011233 455666544333 23
Q ss_pred CCceEEEEcCCCCeEEEE----------EcC-CCCCcEEEEeCCCCCceeEEec--CccCceEEEEeCCCCEEEEEeCC-
Q psy14258 172 SKPRGIALDPTSGYMFFT----------KWG-ATRPMLERSLLDGTERFPMVTH--KIVYPYGVTVDFPTKHVYWVDTY- 237 (440)
Q Consensus 172 ~~P~~iavd~~~g~lywt----------d~~-~~~~~I~r~~~dG~~~~~l~~~--~~~~P~gl~vD~~~~~ly~~d~~- 237 (440)
.--..|.+ ..|.++.. ... ...+.|+...-.|...+.++.- .+.+| +.+ ++|+|+....
T Consensus 173 Gpathiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~e 245 (668)
T COG4946 173 GPATHIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHE 245 (668)
T ss_pred CceeeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEeccc
Confidence 32333333 23444433 221 1246777777777677777653 45566 343 7899986543
Q ss_pred -CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEe--cCC-CCeEEEEeccCC
Q psy14258 238 -LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA--NFS-RPFAIHIYHRQK 313 (440)
Q Consensus 238 -~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~-~p~~~~v~~~~~ 313 (440)
.+.|++++++|.+.+.-..- .-..|.-+.-++.+|.+.. .+.|+..++.+.+-..+-- .+. .+..-+++.|+.
T Consensus 246 G~GnlYSvdldGkDlrrHTnF-tdYY~R~~nsDGkrIvFq~--~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psk 322 (668)
T COG4946 246 GVGNLYSVDLDGKDLRRHTNF-TDYYPRNANSDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSK 322 (668)
T ss_pred CccceEEeccCCchhhhcCCc-hhccccccCCCCcEEEEec--CCcEEEeCCCcCcceeeecCCccccccccccccCHHH
Confidence 45999999999876543220 0234555555555665543 4556656654433222111 111 111111222111
Q ss_pred CCC--CCCCce-eEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCce--EEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258 314 QPD--ALKPST-FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGR 388 (440)
Q Consensus 314 qp~--~~~~~~-~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~--~l~~d~~~~~vy~~d~~~~~I~r~~~~g~ 388 (440)
... ...+.. ..+++. ++.+.++.... ..+++..-...+ -+..|+ +.+-+.+.....+-..+.+|.
T Consensus 323 yledfa~~~Gd~ia~VSR---GkaFi~~~~~~-----~~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 323 YLEDFAVVNGDYIALVSR---GKAFIMRPWDG-----YSIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred hhhhhccCCCcEEEEEec---CcEEEECCCCC-----eeEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCc
Confidence 100 000112 222221 44444443333 233333211111 222233 345555555668888888886
Q ss_pred CeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 389 GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 389 ~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
..+.+ ..++++.+.++++..++.+-.++. +..|.+++++.
T Consensus 393 e~kr~-e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididn 432 (668)
T COG4946 393 EVKRI-EKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDN 432 (668)
T ss_pred eEEEe-eCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecC
Confidence 55555 558999999999988887777754 55677788776
No 49
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.39 E-value=0.00083 Score=61.29 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=123.6
Q ss_pred cCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEec-CCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRK-GFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~ 293 (440)
..-.||.++ .++.||-+....+ .|.++++.......... .. -..-.||++.+|.||--.|.++..+..++.+-+.
T Consensus 45 aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEECCEEEEEEecCCeEEEEccccceE
Confidence 445789985 4789999886655 89999987654432222 21 2356899999999999999999999999976655
Q ss_pred eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCc----eEEEEEcCCCE
Q psy14258 294 YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRP----SVIDYHEKEEY 369 (440)
Q Consensus 294 ~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p----~~l~~d~~~~~ 369 (440)
...+.-.....|+.-. +..|+.+|+. .+++.+++..- . ....+.+..-..| .-|.| .++.
T Consensus 123 ~~~~~y~~EGWGLt~d-----------g~~Li~SDGS-~~L~~~dP~~f-~-~~~~i~V~~~g~pv~~LNELE~--i~G~ 186 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSD-----------GKRLIMSDGS-SRLYFLDPETF-K-EVRTIQVTDNGRPVSNLNELEY--INGK 186 (264)
T ss_dssp EEEEE-SSS--EEEEC-----------SSCEEEE-SS-SEEEEE-TTT--S-EEEEEE-EETTEE---EEEEEE--ETTE
T ss_pred EEEEecCCcceEEEcC-----------CCEEEEECCc-cceEEECCccc-c-eEEEEEEEECCEECCCcEeEEE--EcCE
Confidence 5544333356778733 4568888874 67777775432 1 1112222222223 34655 4788
Q ss_pred EEEEECCCCeEEEEecCCCCeEEEEEC---------------CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 370 IYYAELTSYVIERRKMFGRGKEVVIDT---------------GIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 370 vy~~d~~~~~I~r~~~~g~~~~~~~~~---------------~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
||=--..+..|.|+++......-.+.. +.+-.+|||.|+.+++||+|--.=..+..+++.
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 865556789999999987655544430 123479999999999999996544566666554
No 50
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00017 Score=69.87 Aligned_cols=237 Identities=11% Similarity=-0.021 Sum_probs=134.1
Q ss_pred ccccccceeeeecCCcEEEeceEEEEecC-Cc----eEEEEEcC----CCCCceEEEEcCCCCeEEEEEcCC-------C
Q psy14258 131 RSLLDGTERFPMVTHKIVYPEAIYFCTHY-ME----HCMIAIDL----NLSKPRGIALDPTSGYMFFTKWGA-------T 194 (440)
Q Consensus 131 ~~~~~p~~avD~~~~~lY~~~~I~~~~~d-g~----~~~~~~~~----~~~~P~~iavd~~~g~lywtd~~~-------~ 194 (440)
.+...|.+ +.+..+.+|.+.++.+..++ |. ..++++.. ..+.-+.|+++| .|+||++-... +
T Consensus 128 ~~~~~~~~-~a~~~~~~~~~n~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~ 205 (399)
T COG2133 128 QGRLVYFG-ISEPGGGLYVANRVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQD 205 (399)
T ss_pred ccceeeeE-EEeecCCceEEEEEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccC
Confidence 44445554 22356667777555555554 31 12344431 245678899999 57999996443 1
Q ss_pred ----CCcEEEEeC--------CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCc
Q psy14258 195 ----RPMLERSLL--------DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQN 262 (440)
Q Consensus 195 ----~~~I~r~~~--------dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~ 262 (440)
.++|.|... ++.+ ..+++.++..|.||++++.++.||.++.+.+.+ .-+.....+..+.....
T Consensus 206 ~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~----~~~Deln~i~~G~nYGW 280 (399)
T COG2133 206 NVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL----RGPDELNSIRPGKNYGW 280 (399)
T ss_pred ccccccceeeeccCcccccCCCCCC-cceEEeccCCccceeecCCCCcEEEEecCCCcc----cCcccccccccCCccCC
Confidence 344555444 4444 346677889999999999999999999988766 22333333333433344
Q ss_pred eeeeeEecCEEEEEecCCCeEEEE-eccCCC--ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEc
Q psy14258 263 LYDITVFENNLFVTSWRNQSIIRV-NKFNSD--DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTF 339 (440)
Q Consensus 263 p~gl~~~~~~ly~td~~~~~i~~~-~~~~g~--~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~ 339 (440)
|+ .||..-..+....- ....+. ....+..-..|.++++|.-..-|. =.+-|+++....-.+.++.+
T Consensus 281 P~--------~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~---~r~~lfV~~hgsw~~~~~~~ 349 (399)
T COG2133 281 PY--------AYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPA---YRGDLFVGAHGSWPVLRLRP 349 (399)
T ss_pred ce--------eccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCcc---ccCcEEEEeecceeEEEecc
Confidence 43 22221111211100 000010 111222333578999996554442 13567887765455666676
Q ss_pred CCCCCCc--eeeeeecCCCCceEEEEEcCCCEEEEEECC-CCeEEEEecCC
Q psy14258 340 KRDGTTE--QAIMPITDLKRPSVIDYHEKEEYIYYAELT-SYVIERRKMFG 387 (440)
Q Consensus 340 ~~~~~~~--~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~-~~~I~r~~~~g 387 (440)
++. ... +..+.-....+|.+++..++ +.||++|-. .+.|+|+...+
T Consensus 350 ~g~-~~~~~~~fl~~d~~gR~~dV~v~~D-Gallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 350 DGN-YKVVLTGFLSGDLGGRPRDVAVAPD-GALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred CCC-cceEEEEEEecCCCCcccceEECCC-CeEEEeecCCCCeEEEecCCC
Confidence 666 221 11221112258999999885 668888766 67999998765
No 51
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=5.1e-05 Score=69.09 Aligned_cols=185 Identities=11% Similarity=0.067 Sum_probs=126.7
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeecCCcEEEe-----ceEEEEe
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYP-----EAIYFCT 157 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~~~~lY~~-----~~I~~~~ 157 (440)
+.++.|++..++||-+-.....|..+...|.-+..+ .+ .++..|+ ++-+++++.|+. .++....
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti---------PL-~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI---------PL-TGFSDPE-TIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEe---------cc-cccCChh-HeEEecCCEEEEEehhcceEEEEE
Confidence 899999999999999887777777777777654432 22 4677888 555789999988 4565555
Q ss_pred cCCceEEEEEc-------C---CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe----c----CccCc
Q psy14258 158 HYMEHCMIAID-------L---NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT----H----KIVYP 219 (440)
Q Consensus 158 ~dg~~~~~~~~-------~---~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~----~----~~~~P 219 (440)
.+-........ . .-.--.|+|-||..+.||++-.... -+|.....+-+....-.. . -+...
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeecc
Confidence 54332111111 1 1223679999999999999976653 567766643321111000 0 13356
Q ss_pred eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--C-----CccCceeeeeEecC-EEEEEecC
Q psy14258 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--G-----FPVQNLYDITVFEN-NLFVTSWR 279 (440)
Q Consensus 220 ~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~-----~~~~~p~gl~~~~~-~ly~td~~ 279 (440)
+|+.+|+.++.|++-......+..++.+|.-+..+.. + ..+++|.||+.+.+ .||++.-.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 7899999999999999999999999999976554422 2 23667899999866 99988653
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00046 Score=69.43 Aligned_cols=219 Identities=8% Similarity=0.052 Sum_probs=129.3
Q ss_pred CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCCccCceeeeeE--ecC
Q psy14258 196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FEN 271 (440)
Q Consensus 196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~ 271 (440)
.+|+.++.||.+.+.+.... ......++.+.+++|+++.. +...|+..++.+...+.+..... ...+.++ +++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g--~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG--MTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC--cccCcEECCCCC
Confidence 58999999999887775432 23345677778888887753 34589999988776665543211 1123333 455
Q ss_pred EEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCc
Q psy14258 272 NLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTE 346 (440)
Q Consensus 272 ~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~ 346 (440)
.|+++... +..|+.++..++....+......... +.-. |+ ..|+++..+ ...|+.+++++. ...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~-----~~~s-----pDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~ 327 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTS-----PSYS-----PDGSQIVFESDRSGSPQLYVMNADGS-NPR 327 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCc-----eeEc-----CCCCEEEEEECCCCCCeEEEEECCCC-CeE
Confidence 77665432 34588888765543332111100001 1111 23 345544322 347888887765 111
Q ss_pred eeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC--C--
Q psy14258 347 QAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG--I-- 420 (440)
Q Consensus 347 ~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~--~-- 420 (440)
.+.. .-......++.+.++.|+++... ...|+.++++|.....+.. + ...+.+++.+.++.||++... .
T Consensus 328 --~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~-~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 328 --RISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-G-FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred --Eeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-C-CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 1111 11122346788999999887643 3579999988765544433 3 246778888889999887542 2
Q ss_pred -CeEEEEEeCCCee
Q psy14258 421 -GTINVAKISDFSI 433 (440)
Q Consensus 421 -~~I~~~~~~g~~~ 433 (440)
..+.+++++|+..
T Consensus 403 ~~~L~~~dl~g~~~ 416 (435)
T PRK05137 403 APKLYTVDLTGRNE 416 (435)
T ss_pred cceEEEEECCCCce
Confidence 4799999999543
No 53
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00042 Score=69.67 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=127.1
Q ss_pred eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV 231 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l 231 (440)
+|.+.+.+|...+.+... -....+.+..|...+|+++......+.|++.++++..++.+.... .....+++.+.+++|
T Consensus 185 ~l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence 588889999877776543 233456677887778888865433368999999877665554322 222356788888888
Q ss_pred EEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258 232 YWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH 307 (440)
Q Consensus 232 y~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~ 307 (440)
+++-.. ...|+.+++++...+.+.... ......++. +..|+++....+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~--~~~~~~~~spDG~~l~f~sd~~g-------------------------- 314 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHF--GIDTEPTWAPDGKSIYFTSDRGG-------------------------- 314 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCC--CCccceEECCCCCEEEEEECCCC--------------------------
Confidence 776433 235777777665544433221 011112222 223333211000
Q ss_pred EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEec
Q psy14258 308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKM 385 (440)
Q Consensus 308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~ 385 (440)
...|+.+++++. .. ..+...+ ......++.+.+++|+++.... ..|+..++
T Consensus 315 -----------------------~~~iy~~dl~~g-~~--~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 315 -----------------------RPQIYRVAASGG-SA--ERLTFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred -----------------------CceEEEEECCCC-Ce--EEeecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 012333333222 00 0111111 1223467888889998876433 36889998
Q ss_pred CCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeeeEEe
Q psy14258 386 FGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 386 ~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~~l 437 (440)
++.....+. .+ ...+..++.+.++.|+++.. +...|..++++| ...+.|
T Consensus 368 ~~g~~~~Lt-~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l 418 (433)
T PRK04922 368 STGSVRTLT-PG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRL 418 (433)
T ss_pred CCCCeEECC-CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEc
Confidence 775544433 22 23455677777888888854 456799999999 444444
No 54
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.0013 Score=66.14 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=130.2
Q ss_pred eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV 231 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l 231 (440)
+|.+++.+|...+.+.. .-......+..|...+|+++......+.|+..++++..++.+.... ......++.+.+.+|
T Consensus 183 ~l~~~d~dg~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCCEE
Confidence 68899999988877654 3334567778886667777654322278999999877665553221 122456788888888
Q ss_pred EEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258 232 YWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVNKFNSDDYETIANFSRPFAIH 307 (440)
Q Consensus 232 y~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~~~~g~~~~~~~~~~~p~~~~ 307 (440)
+++-.. ...|+.+++++.....+............+-++..|+++... ...|+.++..+++...+...........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPV 340 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeE
Confidence 776443 346899998887766654432111112223345566655422 3468888875544333322111111111
Q ss_pred EeccCCCCCCCCCceeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC-----CeE
Q psy14258 308 IYHRQKQPDALKPSTFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS-----YVI 380 (440)
Q Consensus 308 v~~~~~qp~~~~~~~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~-----~~I 380 (440)
+ .|. +.+|++.... ...|..+++++. . ... +..-.......+.++++.||++.... ..+
T Consensus 341 -~----Spd----G~~ia~~~~~~~~~~i~~~d~~~~-~---~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L 406 (435)
T PRK05137 341 -W----SPR----GDLIAFTKQGGGQFSIGVMKPDGS-G---ERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL 406 (435)
T ss_pred -E----CCC----CCEEEEEEcCCCceEEEEEECCCC-c---eEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceE
Confidence 1 111 2455554322 246777787655 1 111 11111345677899999998875432 479
Q ss_pred EEEecCCCCeEEE
Q psy14258 381 ERRKMFGRGKEVV 393 (440)
Q Consensus 381 ~r~~~~g~~~~~~ 393 (440)
++++++|.....+
T Consensus 407 ~~~dl~g~~~~~l 419 (435)
T PRK05137 407 YTVDLTGRNEREV 419 (435)
T ss_pred EEEECCCCceEEc
Confidence 9999998766544
No 55
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=0.00025 Score=64.71 Aligned_cols=200 Identities=16% Similarity=0.100 Sum_probs=128.7
Q ss_pred ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEE-EEecCCCeEEEEeccCCCceEEE
Q psy14258 219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF-VTSWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly-~td~~~~~i~~~~~~~g~~~~~~ 297 (440)
.++||.++..+.||-+-.+-..|..++..|.-...+... .+..|.+|++-++..| .+|-....++.+....+.....+
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~ 166 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISA 166 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEec
Confidence 678999999999999887778999999999988888763 2889999999888555 56666677666554333222111
Q ss_pred -------ecCCC-CeEEEEeccCCCCCCCCCceeEEeecC-CccEEEEEEcCCCCCCceee--eeecC----CCCceEEE
Q psy14258 298 -------ANFSR-PFAIHIYHRQKQPDALKPSTFLLYAKG-KPAIIKGLTFKRDGTTEQAI--MPITD----LKRPSVID 362 (440)
Q Consensus 298 -------~~~~~-p~~~~v~~~~~qp~~~~~~~~l~~~~~-~~~~I~~i~~~~~~~~~~~~--~~~~~----~~~p~~l~ 362 (440)
....+ -.|+.=..-. ..++-|+++.. ++-.|+.+..... .-.... .|-.. +...+|+.
T Consensus 167 ~~~~i~L~~~~k~N~GfEGlA~d------~~~~~l~~aKEr~P~~I~~~~~~~~-~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 167 KVQKIPLGTTNKKNKGFEGLAWD------PVDHRLFVAKERNPIGIFEVTQSPS-SLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred cceEEeccccCCCCcCceeeecC------CCCceEEEEEccCCcEEEEEecCCc-ccccccccCcccccceEeeccccce
Confidence 11111 1122211000 01245666654 4667777764432 111000 01111 23456899
Q ss_pred EEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE--------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258 363 YHEKEEYIYYAELTSYVIERRKMFGRGKEVVID--------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI 428 (440)
Q Consensus 363 ~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~--------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~ 428 (440)
||+..+.+++-.-.++.+..++..|..++.+.. ..+..++|+|.| ..++||++.- -|...++..
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvSE-Pnlfy~F~~ 311 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVSE-PNLFYRFTP 311 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEec-CCcceeccc
Confidence 999999999999999999999999976665543 234579999999 5789999943 344555544
No 56
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.27 E-value=0.00051 Score=64.74 Aligned_cols=198 Identities=13% Similarity=0.140 Sum_probs=118.3
Q ss_pred ceEEEEeCCCCEEEEEeCCC------------CcEEEEEccCCCc-EEEecC-C---ccCceeeeeEec-------CEEE
Q psy14258 219 PYGVTVDFPTKHVYWVDTYL------------DFIDRINYDGTDR-KTIRKG-F---PVQNLYDITVFE-------NNLF 274 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~~~------------~~i~~~~~dG~~~-~~i~~~-~---~~~~p~gl~~~~-------~~ly 274 (440)
..++.+| ..++|++.|.+. .+|..+++....+ +.+.-. . .-.....+.++. .++|
T Consensus 3 V~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4578888 788888888753 3778888765433 222111 1 123456777776 5899
Q ss_pred EEecCCCeEEEEeccCCCceEEEecCC--CCe--EEEEeccCCC-CCCC--------CCc-eeEEeecCCccEEEEEEcC
Q psy14258 275 VTSWRNQSIIRVNKFNSDDYETIANFS--RPF--AIHIYHRQKQ-PDAL--------KPS-TFLLYAKGKPAIIKGLTFK 340 (440)
Q Consensus 275 ~td~~~~~i~~~~~~~g~~~~~~~~~~--~p~--~~~v~~~~~q-p~~~--------~~~-~~l~~~~~~~~~I~~i~~~ 340 (440)
+||.....|..++..+++...+..... .|. .+.+.....+ +.+. .++ ..|||.......+++++..
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 999999999999999998887775433 232 1222111111 1110 112 6788886554678888743
Q ss_pred CCC---CCcee-----eeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCC----CCeEEEEE-CC-CCCeeeEE
Q psy14258 341 RDG---TTEQA-----IMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG----RGKEVVID-TG-IYNVEGMA 405 (440)
Q Consensus 341 ~~~---~~~~~-----~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g----~~~~~~~~-~~-~~~~~glA 405 (440)
--. ..... ...+.. .....|+++|+ +|.||+++...+.|.+.+.++ .+.++++. .. +..|.+|+
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 211 11111 112111 12446899999 688999999999999999998 34555554 44 78999999
Q ss_pred Eec-CCCcEEEEeC
Q psy14258 406 VDW-MANNLYWTDA 418 (440)
Q Consensus 406 vD~-~~~~lYwtd~ 418 (440)
+|. -.+.||+...
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 994 1478999863
No 57
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.23 E-value=9.5e-06 Score=61.33 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=56.6
Q ss_pred EEEEcCCCCeEEEEEcCCC---------------CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258 176 GIALDPTSGYMFFTKWGAT---------------RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF 240 (440)
Q Consensus 176 ~iavd~~~g~lywtd~~~~---------------~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~ 240 (440)
+++|++..|.+||||.... .+++.+.++.....+++ ..++..|||+++.+.+..|++++....+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl-~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL-LDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE-EEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe-hhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 6899997799999986332 47899999987665544 4579999999999999999999999999
Q ss_pred EEEEEccCC
Q psy14258 241 IDRINYDGT 249 (440)
Q Consensus 241 i~~~~~dG~ 249 (440)
|.+.-+.|.
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999988773
No 58
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0019 Score=64.85 Aligned_cols=235 Identities=8% Similarity=0.026 Sum_probs=136.4
Q ss_pred CCeEEEEEcCCC--CCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCC
Q psy14258 183 SGYMFFTKWGAT--RPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGF 258 (440)
Q Consensus 183 ~g~lywtd~~~~--~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~ 258 (440)
+...|....... ..+|+.++.||.+.+.+.... ......++.+.+.+|.++.. +...|+..++++...+.+....
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence 345566553321 258999999999988776543 23456788888888887643 3347888888877666654421
Q ss_pred ccCceeeeeE--ecCEEEEEecCC--CeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--c
Q psy14258 259 PVQNLYDITV--FENNLFVTSWRN--QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--P 331 (440)
Q Consensus 259 ~~~~p~gl~~--~~~~ly~td~~~--~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~ 331 (440)
.+...+++ ++..|+++.... ..|+.++..+++...+........... + . |+ ..|+++..+ .
T Consensus 243 --~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~-w----S-----PDG~~I~f~s~~~g~ 310 (429)
T PRK03629 243 --RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPT-W----F-----PDSQNLAYTSDQAGR 310 (429)
T ss_pred --CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceE-E----C-----CCCCEEEEEeCCCCC
Confidence 11122344 455888875433 358888876654433322111111111 1 1 23 345444322 2
Q ss_pred cEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCeeeEEEecC
Q psy14258 332 AIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM 409 (440)
Q Consensus 332 ~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~ 409 (440)
..|+.+++++. ... .+... ........+.+++++|+++... ...|+.+++++...+.+.. . ..-+..++.+.
T Consensus 311 ~~Iy~~d~~~g-~~~--~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~-~~~~~p~~SpD 384 (429)
T PRK03629 311 PQVYKVNINGG-APQ--RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-T-FLDETPSIAPN 384 (429)
T ss_pred ceEEEEECCCC-CeE--EeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-C-CCCCCceECCC
Confidence 47888888765 211 11111 1233457788989999887543 3568889988765554443 2 12234567788
Q ss_pred CCcEEEEeCC--CCeEEEEEeCCCeeeEEe
Q psy14258 410 ANNLYWTDAG--IGTINVAKISDFSIRKVL 437 (440)
Q Consensus 410 ~~~lYwtd~~--~~~I~~~~~~g~~~~~~l 437 (440)
++.|+++... ...+.+.+++| ...+.|
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~~G-~~~~~l 413 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVSTDG-RFKARL 413 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECCC-CCeEEC
Confidence 9989888643 34588999999 434433
No 59
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0021 Score=64.52 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=137.4
Q ss_pred ecCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258 142 MVTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT 213 (440)
Q Consensus 142 ~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~ 213 (440)
+.++-.|+. .+|.+++.||.+.+.+.. .-......+..|...+|.|+......+.|+..++++...+.+..
T Consensus 162 f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~ 240 (429)
T PRK03629 162 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 240 (429)
T ss_pred cCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC
Confidence 346666776 269999999998877755 33456688899976677776543222689999998876655543
Q ss_pred cCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEe--cCEEEEE-ecC-CCeEEEEe
Q psy14258 214 HKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVF--ENNLFVT-SWR-NQSIIRVN 287 (440)
Q Consensus 214 ~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~--~~~ly~t-d~~-~~~i~~~~ 287 (440)
.. .....+++.+.+.+|+++.... ..|+.+++++...+.+..+. ......++. +..|+++ +.. ...|+.++
T Consensus 241 ~~-~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 241 FP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CC-CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEE
Confidence 21 2233578888899999875433 36899998877666554431 122333443 4466544 432 34788888
Q ss_pred ccCCCceEEEecCCCCeEEEEeccCCCCCCCCCc-eeEEeecCC--ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEE
Q psy14258 288 KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPS-TFLLYAKGK--PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH 364 (440)
Q Consensus 288 ~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~-~~l~~~~~~--~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d 364 (440)
..++....+...........+. |+ .+++++... ...|+.+++++. .. ..+.....-....+.
T Consensus 318 ~~~g~~~~lt~~~~~~~~~~~S----------pDG~~Ia~~~~~~g~~~I~~~dl~~g-~~----~~Lt~~~~~~~p~~S 382 (429)
T PRK03629 318 INGGAPQRITWEGSQNQDADVS----------SDGKFMVMVSSNGGQQHIAKQDLATG-GV----QVLTDTFLDETPSIA 382 (429)
T ss_pred CCCCCeEEeecCCCCccCEEEC----------CCCCEEEEEEccCCCceEEEEECCCC-Ce----EEeCCCCCCCCceEC
Confidence 7655443332111111111111 23 445554322 245777777655 11 111111111235678
Q ss_pred cCCCEEEEEECCC--CeEEEEecCCCCeEEEE
Q psy14258 365 EKEEYIYYAELTS--YVIERRKMFGRGKEVVI 394 (440)
Q Consensus 365 ~~~~~vy~~d~~~--~~I~r~~~~g~~~~~~~ 394 (440)
+++.+|+++.... ..++.++++|.....+.
T Consensus 383 pDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 383 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 9899999887543 35888899987665553
No 60
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.18 E-value=0.0024 Score=63.75 Aligned_cols=222 Identities=9% Similarity=0.013 Sum_probs=123.5
Q ss_pred eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEE
Q psy14258 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHV 231 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~l 231 (440)
.|.+++.+|...+.+.... ......+..|...+|+|+......+.|+..++++...+.+... -.....+++.+.+++|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CCCccceEECCCCCEE
Confidence 5888999988777765422 2344566888778898887654336899999876544433321 1233456788778888
Q ss_pred EEEeCCC--CcEEEEEccCCCcEEEecCCccC-ceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258 232 YWVDTYL--DFIDRINYDGTDRKTIRKGFPVQ-NLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI 308 (440)
Q Consensus 232 y~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~-~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v 308 (440)
+++.... ..|+..++++...+.+....... .| ...-++..|+++....+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~l~~~s~~~g--------------------------- 300 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKSIAFTSDRGG--------------------------- 300 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCEEEEEECCCC---------------------------
Confidence 8765433 35777777665444433211010 11 11112223333321100
Q ss_pred eccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCC--CeEEEEecC
Q psy14258 309 YHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS--YVIERRKMF 386 (440)
Q Consensus 309 ~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~--~~I~r~~~~ 386 (440)
...|+.+++++. .. ..+. .........++.+.++.++++.... ..|+.++++
T Consensus 301 ----------------------~~~iy~~d~~~~-~~--~~l~-~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 301 ----------------------SPQIYMMDADGG-EV--RRLT-FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred ----------------------CceEEEEECCCC-CE--EEee-cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 012333333322 00 0000 0112234566778888888887543 478888888
Q ss_pred CCCeEEEEECCCCCeeeEEEecCCCcEEEEeCC--CCeEEEEEeCCC
Q psy14258 387 GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG--IGTINVAKISDF 431 (440)
Q Consensus 387 g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~--~~~I~~~~~~g~ 431 (440)
+...+.+.. . ......++.+.++.|+++... ...+.+.+.+|+
T Consensus 355 ~~~~~~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 355 GGGERVLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CCCeEEccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 754444432 2 234555777778999998653 356888899993
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.17 E-value=0.0055 Score=56.19 Aligned_cols=269 Identities=11% Similarity=0.034 Sum_probs=148.8
Q ss_pred cce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 136 GTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 136 p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
... ++.+.++.|+.+ +.|.+.+++.................+...|....|+.+... +.|...+++.......
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLETGECVRT 88 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcCcccceEE
Confidence 344 555555555544 677777776544332222222334588888865566666543 5788888876433323
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccC
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFN 290 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~ 290 (440)
+......+..+.+.+. ++++++....+.|...++........... ....+..+++..+ .++.+....+.|...+..+
T Consensus 89 ~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 89 LTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 3322335677888755 45666655577888888763322222221 1234667777763 4444443467777777765
Q ss_pred CCceEEEecCC-CCeEEEEeccCCCCCCCCCce-eEEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCC
Q psy14258 291 SDDYETIANFS-RPFAIHIYHRQKQPDALKPST-FLLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKE 367 (440)
Q Consensus 291 g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~-~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~ 367 (440)
++....+.... ....+.+. +++ .++++.. .+.|..+++... .....+ .....+.++++++.
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~~~-~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~- 230 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFS----------PDGEKLLSSSS-DGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPD- 230 (289)
T ss_pred cccceeEecCccccceEEEC----------CCcCEEEEecC-CCcEEEEECCCC----ceecchhhcCCceEEEEEcCC-
Confidence 55544443222 23344333 232 4555543 478888887643 112222 12225678999987
Q ss_pred CEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEE
Q psy14258 368 EYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426 (440)
Q Consensus 368 ~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~ 426 (440)
+.++++....+.|+..++........+...-..+..++++..+. +.++-...+.|.+.
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw 288 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK-RLASGSADGTIRIW 288 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCC-EEEEecCCCeEEec
Confidence 55666655678888888874333222333334678888886544 44444445566553
No 62
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.00081 Score=67.83 Aligned_cols=218 Identities=8% Similarity=-0.019 Sum_probs=131.0
Q ss_pred eEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce-
Q psy14258 62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE- 138 (440)
Q Consensus 62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~- 138 (440)
|..++.+|.+......... .+....+++.+++|+|+.... ..|+..++.+.....+ ...-.....
T Consensus 200 l~i~d~dG~~~~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-----------t~~~g~~~~~ 267 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-----------TSFPGINGAP 267 (448)
T ss_pred EEEEeCCCCCceEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-----------cCCCCCcCCe
Confidence 6666777766552222111 156778999999998875433 3577777765432211 111111234
Q ss_pred eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258 139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212 (440)
Q Consensus 139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~ 212 (440)
++.+.++.|+++ ..|.+.++++...+.+.. ........+..|...+|+++........|++.++++...+.+.
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence 777788888886 358999998876655543 2234556678887778887754332368999999876655553
Q ss_pred ecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCC--eEEEEec
Q psy14258 213 THKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQ--SIIRVNK 288 (440)
Q Consensus 213 ~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~--~i~~~~~ 288 (440)
... .+..+.++.+.++.||++....+ .|..+++++...+.+.....-..| ..+-++..|+++....+ .++.++.
T Consensus 347 ~~g-~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 347 FEG-EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred cCC-CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC
Confidence 222 23345678888999998865443 788888888776655443111233 34445667777654332 3666665
Q ss_pred cCCCceE
Q psy14258 289 FNSDDYE 295 (440)
Q Consensus 289 ~~g~~~~ 295 (440)
+|+...
T Consensus 425 -~G~~~~ 430 (448)
T PRK04792 425 -DGRFKA 430 (448)
T ss_pred -CCCceE
Confidence 444433
No 63
>KOG4499|consensus
Probab=98.11 E-value=0.00039 Score=61.24 Aligned_cols=77 Identities=17% Similarity=0.299 Sum_probs=60.3
Q ss_pred cCCCCceEEEEEcCCCEEEEEECCCCeEEEEe--cCC---CCeEEEEEC------CCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258 353 TDLKRPSVIDYHEKEEYIYYAELTSYVIERRK--MFG---RGKEVVIDT------GIYNVEGMAVDWMANNLYWTDAGIG 421 (440)
Q Consensus 353 ~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~--~~g---~~~~~~~~~------~~~~~~glAvD~~~~~lYwtd~~~~ 421 (440)
..+.-+.||++|.+.+.+|++|+-+..|-..+ ..+ +++..+... +-..|+||++|- +|+||++....+
T Consensus 155 ~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 155 NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGG 233 (310)
T ss_pred hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCc
Confidence 34456789999999999999999999994444 433 456666541 335699999995 889999999999
Q ss_pred eEEEEEeCC
Q psy14258 422 TINVAKISD 430 (440)
Q Consensus 422 ~I~~~~~~g 430 (440)
+|..+++..
T Consensus 234 ~V~~~dp~t 242 (310)
T KOG4499|consen 234 TVQKVDPTT 242 (310)
T ss_pred EEEEECCCC
Confidence 999998765
No 64
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.09 E-value=2.6e-05 Score=58.93 Aligned_cols=70 Identities=14% Similarity=0.153 Sum_probs=55.7
Q ss_pred EEEEEcCCCEEEEEEC-----------------CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCe
Q psy14258 360 VIDYHEKEEYIYYAEL-----------------TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGT 422 (440)
Q Consensus 360 ~l~~d~~~~~vy~~d~-----------------~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~ 422 (440)
++|++..++.||++|. ..+++.+.++.....+++ ..+|..|+|+|+...+..|.+++....+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl-~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL-LDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE-EEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe-hhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 6889998899999985 357999999997544454 4599999999999999999999999999
Q ss_pred EEEEEeCC
Q psy14258 423 INVAKISD 430 (440)
Q Consensus 423 I~~~~~~g 430 (440)
|.+.-+.|
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 99998887
No 65
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.0035 Score=62.49 Aligned_cols=210 Identities=8% Similarity=-0.092 Sum_probs=129.3
Q ss_pred eEEEecCCCceeeeeecccceEEEEEeeecccE-EEEEEcC--CCCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHC-MIAIDLN--LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~-ly~~d~~--~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|..++.+|........... .....+.+..++ +|++... ...|+..++.+...+.+ ...-.....
T Consensus 171 l~~~d~dg~~~~~~~~~~~--~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-----------t~~~g~~~~ 237 (419)
T PRK04043 171 IVLADYTLTYQKVIVKGGL--NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-----------ASSQGMLVV 237 (419)
T ss_pred EEEECCCCCceeEEccCCC--eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-----------ecCCCcEEe
Confidence 8888888887652222222 667888888875 7776554 45688877765432221 111111223
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.++.|.++ ..|.+.++++...+.+..... .-..-...|...+|||+......+.|++.+++|...+.+
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 566677778877 479999998877666644221 112235777666788886543337999999998877666
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCC--------CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CC
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--------DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQ 281 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--------~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~ 281 (440)
....... ..+++.++.|.++.... ..|..++++++..+.+..+. .......+-++..|+++... ..
T Consensus 317 t~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 317 VFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred ccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcE
Confidence 5433222 37788899888876543 47899999888777665532 22222344456677766532 22
Q ss_pred eEEEEecc
Q psy14258 282 SIIRVNKF 289 (440)
Q Consensus 282 ~i~~~~~~ 289 (440)
.+..++..
T Consensus 393 ~L~~~~l~ 400 (419)
T PRK04043 393 ALGIIRLN 400 (419)
T ss_pred EEEEEecC
Confidence 36666664
No 66
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0019 Score=65.02 Aligned_cols=212 Identities=10% Similarity=0.014 Sum_probs=127.1
Q ss_pred eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|..++.++.... +.-.... +....+++.+++|+++.... ..|+..++++..... +...-.....
T Consensus 186 l~i~D~~g~~~~~lt~~~~~--v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-----------l~~~~g~~~~ 252 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEP--ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-----------VASFRGINGA 252 (433)
T ss_pred EEEECCCCCCceEeecCCCc--cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-----------eccCCCCccC
Confidence 666777666544 2222222 67788999989998886543 357777765443221 1111111234
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.+++|+++ ..|.+.++++...+.+.. ........+..|...+|+++......+.|+..++++...+.+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 777788888876 369999998877665533 222334667888766777765322226799999987665545
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC--CCeEEEEe
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR--NQSIIRVN 287 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~--~~~i~~~~ 287 (440)
.... ......++.+.++.|+++.... ..|..+++++...+.+..+.....| ..+-++..|+++... ...|+.++
T Consensus 332 t~~g-~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 332 TFQG-NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred ecCC-CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence 4322 3344678888899999876533 2688888877766655433211222 233345566665532 34577776
Q ss_pred cc
Q psy14258 288 KF 289 (440)
Q Consensus 288 ~~ 289 (440)
..
T Consensus 410 ~~ 411 (433)
T PRK04922 410 TD 411 (433)
T ss_pred CC
Confidence 63
No 67
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.98 E-value=0.0045 Score=62.18 Aligned_cols=211 Identities=8% Similarity=-0.036 Sum_probs=126.5
Q ss_pred eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|..++.+|.... +...... +....+++.+++|+|+.... ..|+..++++.....+ ...-.....
T Consensus 181 l~~~d~~g~~~~~l~~~~~~--~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-----------~~~~g~~~~ 247 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREP--ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-----------TNFEGLNGA 247 (430)
T ss_pred EEEECCCCCCceEEecCCCc--eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-----------cCCCCCcCC
Confidence 666677776554 2222222 67888999999997765433 4577777765432221 111112224
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.++.|+++ ..|.+.++++...+.+.. ...........|....|+++......+.|++.++++...+.+
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 677777888876 369999999877655533 222344556777667787765332226899999987665555
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCC--CeEEEEe
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN--QSIIRVN 287 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~--~~i~~~~ 287 (440)
.... .......+.+.++.|+++....+ .|..+++++...+.+........| .++-++..|+++.... ..++.++
T Consensus 327 t~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 327 TFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred ecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE
Confidence 4322 22234567788999998875433 688888887766665542111223 3444556777776433 3466666
Q ss_pred c
Q psy14258 288 K 288 (440)
Q Consensus 288 ~ 288 (440)
.
T Consensus 405 ~ 405 (430)
T PRK00178 405 I 405 (430)
T ss_pred C
Confidence 5
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.97 E-value=0.0048 Score=56.37 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=117.2
Q ss_pred CCcEEEe------ceEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCc
Q psy14258 144 THKIVYP------EAIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI 216 (440)
Q Consensus 144 ~~~lY~~------~~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~ 216 (440)
.+.||-+ .+|.+.+++.... ...--..-..-.||++- ++.||--.|.+ +...+.+.+.-....-+.- .
T Consensus 55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~--~~~f~yd~~tl~~~~~~~y-~ 129 (264)
T PF05096_consen 55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKE--GTGFVYDPNTLKKIGTFPY-P 129 (264)
T ss_dssp TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSS--SEEEEEETTTTEEEEEEE--S
T ss_pred CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecC--CeEEEEccccceEEEEEec-C
Confidence 4568877 5788888886442 22211233467899995 58999999997 5888888864322111111 2
Q ss_pred cCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEE--e-cCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTI--R-KGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i--~-~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~ 292 (440)
....||+-| ++.||.+| ++++|+..+...- ....+ . .+..+..-.-|...++.||---|.++.|.++|+.+|+
T Consensus 130 ~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 130 GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-B
T ss_pred CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCe
Confidence 346799976 77898888 5788998886532 22222 1 1333555677888899999999999999999999886
Q ss_pred ceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258 293 DYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI 370 (440)
Q Consensus 293 ~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v 370 (440)
....+. ++- . .. ..+.. . . +...--.|||||+.++.+
T Consensus 207 V~~~iDls~L~--------~-~~------------------------~~~~~--~----~--~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 207 VVGWIDLSGLR--------P-EV------------------------GRDKS--R----Q--PDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp EEEEEE-HHHH--------H-HH------------------------TSTTS--T--------TTS-EEEEEEETTTTEE
T ss_pred EEEEEEhhHhh--------h-cc------------------------ccccc--c----c--ccCCeeEeEeEeCCCCEE
Confidence 654331 100 0 00 00000 0 0 001124699999999999
Q ss_pred EEEECCCCeEEEEecC
Q psy14258 371 YYAELTSYVIERRKMF 386 (440)
Q Consensus 371 y~~d~~~~~I~r~~~~ 386 (440)
|++-..=..+|++.+.
T Consensus 246 ~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 246 FVTGKLWPKLYEVKLV 261 (264)
T ss_dssp EEEETT-SEEEEEEEE
T ss_pred EEEeCCCCceEEEEEE
Confidence 9998777788888764
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.94 E-value=0.015 Score=53.16 Aligned_cols=236 Identities=11% Similarity=0.048 Sum_probs=137.5
Q ss_pred CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-
Q psy14258 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD- 250 (440)
Q Consensus 172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~- 250 (440)
....+++++|....|+.+... +.|...+++.................+.+.+.+..|+.+. ..+.|...++....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~---g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~ 85 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD---GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGEC 85 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC---cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccc
Confidence 457788898865666655543 4777777765443222222222334777776665666554 46778888876533
Q ss_pred cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCc-eeEEee
Q psy14258 251 RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPS-TFLLYA 327 (440)
Q Consensus 251 ~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~-~~l~~~ 327 (440)
...+... ...+..+.+..+ .++++....+.|...+..+++....+.... .+..+.+. |+ .+++.+
T Consensus 86 ~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~~ 153 (289)
T cd00200 86 VRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS----------PDGTFVASS 153 (289)
T ss_pred eEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEc----------CcCCEEEEE
Confidence 2222221 234667777664 566665557778777776554444433222 23344333 22 344444
Q ss_pred cCCccEEEEEEcCCCCCCceeeeeecC-CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEE
Q psy14258 328 KGKPAIIKGLTFKRDGTTEQAIMPITD-LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAV 406 (440)
Q Consensus 328 ~~~~~~I~~i~~~~~~~~~~~~~~~~~-~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAv 406 (440)
. ..+.|..+++... . ....+.. -.....+++++.++.++.+.. .+.|...++............-..+..+++
T Consensus 154 ~-~~~~i~i~d~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 154 S-QDGTIKLWDLRTG-K---CVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred c-CCCcEEEEEcccc-c---cceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 3 2377888887643 1 1111111 224678999998777777765 788888888753332222223346788898
Q ss_pred ecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 407 DWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 407 D~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+.. +.++.+....+.|.+.++..
T Consensus 228 ~~~-~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 228 SPD-GYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred cCC-CcEEEEEcCCCcEEEEEcCC
Confidence 865 56666665578899998874
No 70
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.91 E-value=0.008 Score=60.00 Aligned_cols=202 Identities=9% Similarity=-0.052 Sum_probs=121.2
Q ss_pred eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|..++.++.... +...... ....++++.+++|+|+.... ..|+..++....... +...-.....
T Consensus 172 l~~~d~~g~~~~~l~~~~~~--~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-----------~~~~~~~~~~ 238 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREP--ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-----------VASFPGMNGA 238 (417)
T ss_pred EEEEcCCCCCCEEeecCCCc--eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------eecCCCCccc
Confidence 667777666554 3222222 67778999999999987644 456666655332111 1111122344
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.++.||++ ..|+..++++...+.+... .......+..|...+|+++......+.|++.++++...+.+
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 677777778876 3588889887665554332 12223456677666787765432226899999988765544
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCC--CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecC
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYL--DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR 279 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~--~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~ 279 (440)
... ......+++.+.+..|+++.... ..|..+++++...+.+........| ..+-++..|+++...
T Consensus 318 ~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 318 TFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP-SFAPNGRMILYATTR 385 (417)
T ss_pred ecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc-eECCCCCEEEEEEeC
Confidence 432 23445678888888999987643 3788888887666555442212222 334456677776653
No 71
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0077 Score=60.41 Aligned_cols=216 Identities=6% Similarity=-0.049 Sum_probs=123.8
Q ss_pred eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|..++.+|.... +...... +...++.+.+++|+++.... ..|+..++.+..... +...-.....
T Consensus 178 L~~~D~dG~~~~~l~~~~~~--v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-----------l~~~~g~~~~ 244 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEP--IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-----------VANFKGSNSA 244 (427)
T ss_pred EEEECCCCCCceEeccCCCC--cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-----------eecCCCCccc
Confidence 666777666544 2222222 67788999988988876433 357777775443221 1111112334
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.++.|+++ ..|+++++++...+.+.. ........+..|...+|+++........|+..++++...+.+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV 323 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence 777788888876 368888888776555533 222334556788666777664322226899999887655444
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCC--CeEEEEe
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN--QSIIRVN 287 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~--~~i~~~~ 287 (440)
.... ......++.+.++.|+++....+ .|...++++...+.+..+.....| ..+-++..|+++.... ..++.++
T Consensus 324 t~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 324 TFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESP-SFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred ecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCc-eECCCCCEEEEEEecCCCEEEEEEE
Confidence 4222 22234678888889888765433 688888877666655443111122 2333444666554322 2355555
Q ss_pred ccCCCce
Q psy14258 288 KFNSDDY 294 (440)
Q Consensus 288 ~~~g~~~ 294 (440)
. +|+..
T Consensus 402 ~-~g~~~ 407 (427)
T PRK02889 402 S-DGRIK 407 (427)
T ss_pred C-CCCce
Confidence 5 34433
No 72
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.82 E-value=0.013 Score=54.22 Aligned_cols=214 Identities=14% Similarity=0.105 Sum_probs=111.8
Q ss_pred EcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-----CCCceeEEec-------CccCceEEEEeCCCCE----
Q psy14258 167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-----GTERFPMVTH-------KIVYPYGVTVDFPTKH---- 230 (440)
Q Consensus 167 ~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-----G~~~~~l~~~-------~~~~P~gl~vD~~~~~---- 230 (440)
+...|.+|.||++.| .+.++++|.+. ......+.+ |.....++.. ....|.|+.+....+.
T Consensus 18 tDp~L~N~WGia~~p-~~~~WVadngT--~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 18 VDPGLRNAWGLSYRP-GGPFWVANTGT--GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred cCccccccceeEecC-CCCEEEecCCc--ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 455789999999999 57788888776 355666665 4443323331 1347999988643321
Q ss_pred ---------EEEEeCCCCcEEEEEc--cCC---CcEEEecCC-ccCceeeeeEe----cCEEEEEecCCCeEEEEeccCC
Q psy14258 231 ---------VYWVDTYLDFIDRINY--DGT---DRKTIRKGF-PVQNLYDITVF----ENNLFVTSWRNQSIIRVNKFNS 291 (440)
Q Consensus 231 ---------ly~~d~~~~~i~~~~~--dG~---~~~~i~~~~-~~~~p~gl~~~----~~~ly~td~~~~~i~~~~~~~g 291 (440)
||.+ +.+.|..-.. +-. .-.+++... .-.-=.|+++. +++||-+|..+++|-.++.. -
T Consensus 95 ~g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f 171 (336)
T TIGR03118 95 EGITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-F 171 (336)
T ss_pred CCcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-c
Confidence 2222 2233433321 111 111222211 11122577766 56899999888877665532 1
Q ss_pred CceEEEecC--------CCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEE
Q psy14258 292 DDYETIANF--------SRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDY 363 (440)
Q Consensus 292 ~~~~~~~~~--------~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~ 363 (440)
+...+-..+ ..|++|+.. .+.|||+-... |.. ...+
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqni-----------g~~lyVtYA~q--------d~~-~~d~---------------- 215 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNL-----------GGTLYVTYAQQ--------DAD-RNDE---------------- 215 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEE-----------CCeEEEEEEec--------CCc-cccc----------------
Confidence 111110000 013333322 23333321100 000 0000
Q ss_pred EcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CCCCCeeeEEE-----ecCCCcEEEEeCCCCeEEEEEeC-C
Q psy14258 364 HEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TGIYNVEGMAV-----DWMANNLYWTDAGIGTINVAKIS-D 430 (440)
Q Consensus 364 d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~~~~~glAv-----D~~~~~lYwtd~~~~~I~~~~~~-g 430 (440)
++..+.+-|-.++++|.-...+.+ ..|+.|.|||+ -..++.|-+-+-+.++|.+++.. |
T Consensus 216 --------v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 216 --------VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred --------ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 111233455555666654444433 34789999997 44678999999999999999975 5
No 73
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.80 E-value=0.021 Score=57.39 Aligned_cols=110 Identities=8% Similarity=-0.033 Sum_probs=70.3
Q ss_pred cCCcEEEe--------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258 143 VTHKIVYP--------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH 214 (440)
Q Consensus 143 ~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~ 214 (440)
.++-.|+. ..|.+.+.+|...+.+.. .-......+..|...+|.++......+.|+..++++...+.+...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~ 246 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF 246 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC
Confidence 45545665 368888999988766544 333457788899777888876543336899999987665544322
Q ss_pred CccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEE
Q psy14258 215 KIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTI 254 (440)
Q Consensus 215 ~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i 254 (440)
. ..-..+++.+.+.+|+++-...+ .|+.+++++.....+
T Consensus 247 ~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 247 R-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred C-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 1 12235678878888888643333 466667666554444
No 74
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.80 E-value=0.012 Score=55.42 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=108.5
Q ss_pred EEEEEeeecccEEEEEEcCC------------CCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecC-----
Q psy14258 83 AIYFCTHYMEHCMIAIDLNL------------SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVT----- 144 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~------------~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~----- 144 (440)
+.++.+|. .++||+.|... .+|..+++....+ +....-...+ ......... +||-..
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~l--i~~~~~p~~~--~~~~s~lndl~VD~~~~~~~~ 77 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQL--IRRYPFPPDI--APPDSFLNDLVVDVRDGNCDD 77 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCE--EEEEE--CCC--S-TCGGEEEEEEECTTTTS-S
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcE--EEEEECChHH--cccccccceEEEEccCCCCcc
Confidence 56677774 47788887642 2344444432221 1111111111 123345566 788754
Q ss_pred CcEEEe----ceEEEEecCC-ceEEEEEcCC------------------CCCceEEEEcC---CCCeEEEEEcCCCCCcE
Q psy14258 145 HKIVYP----EAIYFCTHYM-EHCMIAIDLN------------------LSKPRGIALDP---TSGYMFFTKWGATRPML 198 (440)
Q Consensus 145 ~~lY~~----~~I~~~~~dg-~~~~~~~~~~------------------~~~P~~iavd~---~~g~lywtd~~~~~~~I 198 (440)
+.+|++ ..|.+.++.. +.++++-... ....-||++.| ..++|||.-..+ .++
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--~~l 155 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--RKL 155 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---SEE
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC--CcE
Confidence 368999 5788888765 4444432211 12256788876 346899998765 478
Q ss_pred EEEeCC----CCCc--e------eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC----CCcEEEecCC-ccC
Q psy14258 199 ERSLLD----GTER--F------PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG----TDRKTIRKGF-PVQ 261 (440)
Q Consensus 199 ~r~~~d----G~~~--~------~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG----~~~~~i~~~~-~~~ 261 (440)
++...+ .+.. . +.+........|+++| .++.||+++...+.|.+.+.++ .+.+++.... .+.
T Consensus 156 y~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~ 234 (287)
T PF03022_consen 156 YRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ 234 (287)
T ss_dssp EEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS
T ss_pred EEEEHHHhhCccccccccccccceeccccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee
Confidence 887642 2111 1 1222222356799999 5999999999999999999988 5667777643 489
Q ss_pred ceeeeeEec---CEEEEEe
Q psy14258 262 NLYDITVFE---NNLFVTS 277 (440)
Q Consensus 262 ~p~gl~~~~---~~ly~td 277 (440)
.|.++++.. +.||+..
T Consensus 235 ~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 235 WPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SEEEEEE-T--TS-EEEEE
T ss_pred ccceeeeccccCceEEEEE
Confidence 999999998 6999875
No 75
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.66 E-value=0.033 Score=55.83 Aligned_cols=221 Identities=8% Similarity=-0.028 Sum_probs=123.8
Q ss_pred eeEEEecCCCcee-eeeecccceEEEEEeeecccE---EEEEEcC-CCCceeEEeCCCCCcceeeccccccceeeccccc
Q psy14258 61 CFGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHC---MIAIDLN-LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD 135 (440)
Q Consensus 61 ~I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~---ly~~d~~-~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 135 (440)
.|..++.+|.+.. +...... ...-.+.+.+++ +|.+..+ ...|+...+++.....+ ...-..
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~--~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-----------t~~~g~ 232 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSL--SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-----------LALQGN 232 (428)
T ss_pred eEEEEcCCCCCceEcccCCCC--cccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-----------ecCCCC
Confidence 3888888887765 3332222 345578887654 3455443 34688888876543322 111112
Q ss_pred cce-eeeecCCcEEEe------ceEEEE--ecCC---ceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258 136 GTE-RFPMVTHKIVYP------EAIYFC--THYM---EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL 203 (440)
Q Consensus 136 p~~-avD~~~~~lY~~------~~I~~~--~~dg---~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~ 203 (440)
... ++.+.++.|.|+ ..+.+. ++++ ...+.+...........+..|...+|+|+.......+|+++++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 234 677778888877 145554 3332 2333443332233445688886666777653322268999988
Q ss_pred CCCC-ceeEEecCccCceEEEEeCCCCEEEEEeCC--CCcEEEEEccCCCcEEEecCCccCceeeeeE--ecCEEEEEec
Q psy14258 204 DGTE-RFPMVTHKIVYPYGVTVDFPTKHVYWVDTY--LDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSW 278 (440)
Q Consensus 204 dG~~-~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~--~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~ 278 (440)
++.. ....+..........++.+.+++|+++... ...|..+++++...+.+..+. ......++ ++..|+++..
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--ENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--CCccceEECCCCCEEEEEEC
Confidence 7532 222222222233456788888889887543 347889999888777665431 12233444 3457776543
Q ss_pred --CCCeEEEEeccCCCceEE
Q psy14258 279 --RNQSIIRVNKFNSDDYET 296 (440)
Q Consensus 279 --~~~~i~~~~~~~g~~~~~ 296 (440)
....|+.++..+++...+
T Consensus 391 ~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 391 NSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCCceEEEEECCCCCEEEe
Confidence 245678888765554433
No 76
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.65 E-value=0.083 Score=52.96 Aligned_cols=225 Identities=8% Similarity=0.006 Sum_probs=118.3
Q ss_pred eEEEEecCCceEEEEEcCC--CCCceEEEEcCCCC---eEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeC
Q psy14258 152 AIYFCTHYMEHCMIAIDLN--LSKPRGIALDPTSG---YMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~~--~~~P~~iavd~~~g---~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~ 226 (440)
.|.+++.||...+.+.... ...| +..|... .+|.+..... +.|+..+++|..++.+.... +.....++.+
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP---~wSPDG~~~~~~y~S~~~g~-~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITP---TWMHIGSGFPYLYVSYKLGV-PKIFLGSLENPAGKKILALQ-GNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccc---eEccCCCceEEEEEEccCCC-ceEEEEECCCCCceEeecCC-CCccceEECC
Confidence 6889999999887765422 1223 4455332 3456655444 79999999998877765432 2234567778
Q ss_pred CCCEEEEEeCCCC--cEEEE--EccC---CCcEEEecCCccCceeeeeE--ecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258 227 PTKHVYWVDTYLD--FIDRI--NYDG---TDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 227 ~~~~ly~~d~~~~--~i~~~--~~dG---~~~~~i~~~~~~~~p~gl~~--~~~~ly~td~~~~~i~~~~~~~g~~~~~~ 297 (440)
.+.+|.++....+ .++.. ++++ ...+.+..+. .......++ ++..|+++...
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~------------------ 301 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNK------------------ 301 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECC------------------
Confidence 8888888764322 33332 2221 1112222110 000001111 12222222110
Q ss_pred ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC-
Q psy14258 298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT- 376 (440)
Q Consensus 298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~- 376 (440)
.+...|+.+++++.+. ....+.. ........++.|++++|+++...
T Consensus 302 -------------------------------~g~~~ly~~~~~~~g~-~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 302 -------------------------------DGRPRIYIMQIDPEGQ-SPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred -------------------------------CCCceEEEEECccccc-ceEEecc-CCCCccceeECCCCCEEEEEEcCC
Confidence 0112344444432200 0001110 11122345678888888887543
Q ss_pred -CCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC--CCCeEEEEEeCCCeee
Q psy14258 377 -SYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA--GIGTINVAKISDFSIR 434 (440)
Q Consensus 377 -~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~--~~~~I~~~~~~g~~~~ 434 (440)
...|+.+++++...+.+.. +-......+..+.++.||++.. +...|.+++++|...+
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 3579999998766555543 3234566777777888888743 4567999999884433
No 77
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.62 E-value=2.2e-05 Score=48.33 Aligned_cols=27 Identities=30% Similarity=0.663 Sum_probs=24.0
Q ss_pred CCCCCCCCcccCCCceEEc-cCCeeeec
Q psy14258 19 IDGSCDQTCTNTHLSYTYT-DEGFSFQG 45 (440)
Q Consensus 19 ~~~~Cs~~C~n~~~~~~C~-~~g~~l~~ 45 (440)
.++.|+|+|.+.+++|+|+ ++||.|.+
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGYKLAE 31 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTEEE-T
T ss_pred CCCCcCCCCccCCCceEeECCCCCEECc
Confidence 3689999999999999999 99999865
No 78
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.61 E-value=0.028 Score=54.43 Aligned_cols=125 Identities=16% Similarity=0.263 Sum_probs=77.3
Q ss_pred cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcC--CCCC-CceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258 299 NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFK--RDGT-TEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375 (440)
Q Consensus 299 ~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~--~~~~-~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~ 375 (440)
.+..|+|+.+|+.... .+-|.++.+. .+.+....+. +.+. .......+..-..+.|+++|...++||+++.
T Consensus 154 ~~~e~yGlcly~~~~~-----g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE 227 (381)
T PF02333_consen 154 DLSEPYGLCLYRSPST-----GALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE 227 (381)
T ss_dssp SSSSEEEEEEEE-TTT-------EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET
T ss_pred ccccceeeEEeecCCC-----CcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC
Confidence 3445889999974331 1345555543 3666655553 3321 1122223333357889999999999999995
Q ss_pred CCCeEEEEecC--C-CCeEEEEEC---CC-CCeeeEEEec---CCCcEEEEeCCCCeEEEEEeCC
Q psy14258 376 TSYVIERRKMF--G-RGKEVVIDT---GI-YNVEGMAVDW---MANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 376 ~~~~I~r~~~~--g-~~~~~~~~~---~~-~~~~glAvD~---~~~~lYwtd~~~~~I~~~~~~g 430 (440)
..-|+|+..+ + ..++.+... ++ ..++||++=. -.+.|..++.+.++..+++-.|
T Consensus 228 -~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 228 -DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp -TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred -ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 5689999876 3 334444331 23 4789999832 2358999999999999999887
No 79
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.59 E-value=0.00021 Score=41.49 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCCeeeEEEecCCCcEEEEeCCCCeEEEE
Q psy14258 398 IYNVEGMAVDWMANNLYWTDAGIGTINVA 426 (440)
Q Consensus 398 ~~~~~glAvD~~~~~lYwtd~~~~~I~~~ 426 (440)
+..|.|||+| ..++||++|.++++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 588999999999999875
No 80
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.0046 Score=60.08 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=97.7
Q ss_pred cccce--eeeecCCcEEEe-----------------ceEEEE--------ecCCceEEEEEcCCCCCceEEEEcCCCCeE
Q psy14258 134 LDGTE--RFPMVTHKIVYP-----------------EAIYFC--------THYMEHCMIAIDLNLSKPRGIALDPTSGYM 186 (440)
Q Consensus 134 ~~p~~--avD~~~~~lY~~-----------------~~I~~~--------~~dg~~~~~~~~~~~~~P~~iavd~~~g~l 186 (440)
.+..+ ++++.+ +||++ ++|.+. +.++...+ +.+.++.+|.|++.+|.+|.|
T Consensus 176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~-i~s~G~RN~qGl~w~P~tg~L 253 (399)
T COG2133 176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSE-IWSYGHRNPQGLAWHPVTGAL 253 (399)
T ss_pred CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcc-eEEeccCCccceeecCCCCcE
Confidence 34455 999988 89999 223333 33444433 345588999999999999999
Q ss_pred EEEEcCCC-------CCcEE------------------EEeCCCCCceeEEe-----cCccCceEEEEeCCC------CE
Q psy14258 187 FFTKWGAT-------RPMLE------------------RSLLDGTERFPMVT-----HKIVYPYGVTVDFPT------KH 230 (440)
Q Consensus 187 ywtd~~~~-------~~~I~------------------r~~~dG~~~~~l~~-----~~~~~P~gl~vD~~~------~~ 230 (440)
|.++.+.+ ...|+ +...++.....+.. .....|.||++=..+ +.
T Consensus 254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~ 333 (399)
T COG2133 254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD 333 (399)
T ss_pred EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence 99998862 00110 01111111111111 112347899984222 68
Q ss_pred EEEEeCCCCcEEEEEccCCCc---EEEecCCccCceeeeeEecC-EEEEEecC-CCeEEEEecc
Q psy14258 231 VYWVDTYLDFIDRINYDGTDR---KTIRKGFPVQNLYDITVFEN-NLFVTSWR-NQSIIRVNKF 289 (440)
Q Consensus 231 ly~~d~~~~~i~~~~~dG~~~---~~i~~~~~~~~p~gl~~~~~-~ly~td~~-~~~i~~~~~~ 289 (440)
||++......+.+.+.+|... +-++.+.....|.++++..| .||+++-. ++.|+|+...
T Consensus 334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~ 397 (399)
T COG2133 334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA 397 (399)
T ss_pred EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence 999988888888888888733 22233211268999999877 88888876 6799998763
No 81
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.35 E-value=0.0091 Score=60.96 Aligned_cols=156 Identities=9% Similarity=-0.031 Sum_probs=94.3
Q ss_pred EecCEEEEEecCCCeEEEEeccCCCceEEEe--cCCCCeEEEEe-----------ccCCCCCCCCCce-eEEeecCCccE
Q psy14258 268 VFENNLFVTSWRNQSIIRVNKFNSDDYETIA--NFSRPFAIHIY-----------HRQKQPDALKPST-FLLYAKGKPAI 333 (440)
Q Consensus 268 ~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~--~~~~p~~~~v~-----------~~~~qp~~~~~~~-~l~~~~~~~~~ 333 (440)
+++.+||+-|-.+.+|-|++...-+.-+++. +.....++... .+.+-|.+ +++ .|..+....+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plp--nDGk~l~~~~ey~~~ 216 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLP--NDGKDLDDPKKYRSL 216 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccC--CCCCEeecccceeEE
Confidence 5667999999999999999876554444332 22222232221 12222332 232 34444433466
Q ss_pred EEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE--C-CC---------------------------------
Q psy14258 334 IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE--L-TS--------------------------------- 377 (440)
Q Consensus 334 I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d--~-~~--------------------------------- 377 (440)
+..|+.+.. ++...+.--.+|..+++++.++++|++. + ..
T Consensus 217 vSvID~etm----eV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 217 FTAVDAETM----EVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred EEEEECccc----eEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 677765543 3333333334899999999999999985 1 11
Q ss_pred ---CeEEEEecCC-----CCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 378 ---YVIERRKMFG-----RGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 378 ---~~I~r~~~~g-----~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
++|..++... ......+..+ .+|.|+++.+.++.+|.++..+++|.|+++.-
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 2222222221 1111112222 57999999999999999999999999999864
No 82
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.33 E-value=0.079 Score=49.12 Aligned_cols=208 Identities=11% Similarity=0.106 Sum_probs=125.1
Q ss_pred cccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccce-ee-----ccccccce-eeeecCC-----
Q psy14258 78 TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM-LE-----RSLLDGTE-RFPMVTH----- 145 (440)
Q Consensus 78 ~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~-~~-----~~~~~p~~-avD~~~~----- 145 (440)
+.+ ++||++.+. +.++++|...+..-..+.+....... ..+.++ +. ..-..|.| .+..-..
T Consensus 22 L~N--~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~----~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 22 LRN--AWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLV----QDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred ccc--cceeEecCC-CCEEEecCCcceEEeecCCcccccCC----ccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC
Confidence 667 999999985 57788887776543333331100000 001111 10 12246777 6653222
Q ss_pred --------cEEEe--ceEEEEecC--Cc---eEEEEEcCC--CCCceEEEEcCC--CCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258 146 --------KIVYP--EAIYFCTHY--ME---HCMIAIDLN--LSKPRGIALDPT--SGYMFFTKWGATRPMLERSLLDGT 206 (440)
Q Consensus 146 --------~lY~~--~~I~~~~~d--g~---~~~~~~~~~--~~~P~~iavd~~--~g~lywtd~~~~~~~I~r~~~dG~ 206 (440)
.||.+ ++|..-... -. ...+++... -.--+|+|+-.. ..+||-+|... ++|.+.+ ++
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~--g~IDVFd--~~ 170 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ--GRIDVFK--GS 170 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCC--CceEEec--Cc
Confidence 23333 444443321 11 122333322 234567777644 57899999875 6998874 33
Q ss_pred CceeEEec--------CccCceEEEEeCCCCEEEEEeCC-------------CCcEEEEEccCCCcEEEecCCccCceee
Q psy14258 207 ERFPMVTH--------KIVYPYGVTVDFPTKHVYWVDTY-------------LDFIDRINYDGTDRKTIRKGFPVQNLYD 265 (440)
Q Consensus 207 ~~~~l~~~--------~~~~P~gl~vD~~~~~ly~~d~~-------------~~~i~~~~~dG~~~~~i~~~~~~~~p~g 265 (440)
-++.-+.. .-..|.+|.- .+++||++-.+ .+.|...+.+|.-++-+.++..|..|.|
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG 248 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWG 248 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCce
Confidence 33222111 1235777766 58999998542 3478889999998887777556999999
Q ss_pred eeE-------ecCEEEEEecCCCeEEEEeccCCCceEEEe
Q psy14258 266 ITV-------FENNLFVTSWRNQSIIRVNKFNSDDYETIA 298 (440)
Q Consensus 266 l~~-------~~~~ly~td~~~~~i~~~~~~~g~~~~~~~ 298 (440)
|++ +.+.|.+...++++|..++..+|+..-.+.
T Consensus 249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred eeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 998 356899999999999999988887655443
No 83
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.29 E-value=0.16 Score=47.54 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=65.2
Q ss_pred ceEEEE--ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC----------CCCCceeEEe-----
Q psy14258 151 EAIYFC--THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL----------DGTERFPMVT----- 213 (440)
Q Consensus 151 ~~I~~~--~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~----------dG~~~~~l~~----- 213 (440)
+++... +.+|.. .+....+.+|.|+++.+ ..||.+... +|++..- .+..-.-.+.
T Consensus 28 gkL~~ig~~~~g~l--~~~~r~F~r~MGl~~~~--~~l~~~t~~----qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~ 99 (335)
T TIGR03032 28 GKLFFIGLQPNGEL--DVFERTFPRPMGLAVSP--QSLTLGTRY----QLWRFANVDNLLPAGQTHPGYDRLYVPRASYV 99 (335)
T ss_pred ceEEEEEeCCCCcE--EEEeeccCccceeeeeC--CeEEEEEcc----eeEEcccccccccccccCCCCCeEEeeeeeee
Confidence 444444 334542 23334678999999977 679988754 5666611 1111111111
Q ss_pred cCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEE--------EecCCccCceeeeeEecC-EEEEEe
Q psy14258 214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT--------IRKGFPVQNLYDITVFEN-NLFVTS 277 (440)
Q Consensus 214 ~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~--------i~~~~~~~~p~gl~~~~~-~ly~td 277 (440)
++.-....|++ .++.+++++...+++-.++.+-+..-. +.... -=|-+|+|+.++ --|+|-
T Consensus 100 TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eD-RCHLNGlA~~~g~p~yVTa 169 (335)
T TIGR03032 100 TGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPED-RCHLNGMALDDGEPRYVTA 169 (335)
T ss_pred ccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccC-ceeecceeeeCCeEEEEEE
Confidence 11112234666 577899999888888888876654321 11111 236789998877 445554
No 84
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.27 E-value=0.12 Score=50.13 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=97.5
Q ss_pred ceeEEEEeecccceeeeEEEecCCCcee-eeee-cccceEEEEEee--ecccE---EEEEEcCC--CCceeEEeCCCCCc
Q psy14258 46 VKTHLYETIEAFWEECFGPMDIEEWDEG-LSFL-TFAQEAIYFCTH--YMEHC---MIAIDLNL--SKPRGIALDPTSGY 116 (440)
Q Consensus 46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~-~~~~-~~~~~~~~i~~d--~~~~~---ly~~d~~~--~~I~~~~~~~~~~~ 116 (440)
+.++++.+.++ +-+...+|+|.... +... .+| +.+-++ ..+++ +..++... ++|....++....
T Consensus 67 ~kSlIigTdK~---~GL~VYdL~Gk~lq~~~~Gr~NN---VDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g- 139 (381)
T PF02333_consen 67 AKSLIIGTDKK---GGLYVYDLDGKELQSLPVGRPNN---VDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG- 139 (381)
T ss_dssp GG-EEEEEETT---TEEEEEETTS-EEEEE-SS-EEE---EEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT-
T ss_pred ccceEEEEeCC---CCEEEEcCCCcEEEeecCCCcce---eeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC-
Confidence 55677777654 34888899998776 3222 111 112111 11222 23344332 3344344443211
Q ss_pred ceeeccccccceeeccccccce-eee--ecCCcEEEe-----ceEEEEec----CCceEEEEEc--CCCCCceEEEEcCC
Q psy14258 117 MFFTKWGATRPMLERSLLDGTE-RFP--MVTHKIVYP-----EAIYFCTH----YMEHCMIAID--LNLSKPRGIALDPT 182 (440)
Q Consensus 117 ~~~~~~~~~~v~~~~~~~~p~~-avD--~~~~~lY~~-----~~I~~~~~----dg~~~~~~~~--~~~~~P~~iavd~~ 182 (440)
.+...+. ....+...+..|.| ++- ..++.+|.. +.++...+ +|...-.++. .--.+|+|+++|.+
T Consensus 140 ~L~~v~~-~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 140 ELTDVTD-PAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp EEEE-CB-TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred cceEcCC-CCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 1111011 11123456777889 874 456778866 44444433 3332222332 12258999999999
Q ss_pred CCeEEEEEcCCCCCcEEEEeCC---CCCceeEEec---Cc-cCceEEEEeC---CCCEEEEEeCCCCcEEEEEccCCC
Q psy14258 183 SGYMFFTKWGATRPMLERSLLD---GTERFPMVTH---KI-VYPYGVTVDF---PTKHVYWVDTYLDFIDRINYDGTD 250 (440)
Q Consensus 183 ~g~lywtd~~~~~~~I~r~~~d---G~~~~~l~~~---~~-~~P~gl~vD~---~~~~ly~~d~~~~~i~~~~~dG~~ 250 (440)
.|+||+.+.. ..|++...+ +..++.+... .+ .-..||+|=. ..+.|..++.+.+.....+..+.+
T Consensus 219 ~g~LYvgEE~---~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 219 TGRLYVGEED---VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp TTEEEEEETT---TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred cCCEEEecCc---cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 9999999987 489999986 3334333221 12 3577888832 345777777777777777666543
No 85
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.11 E-value=0.2 Score=50.38 Aligned_cols=196 Identities=9% Similarity=0.032 Sum_probs=114.1
Q ss_pred eEEEecCCCcee-eeeecccceEEEEEeeecccEEEEEEcCC--CCceeEEeCCCCCcceeeccccccceeeccccccce
Q psy14258 62 FGPMDIEEWDEG-LSFLTFAQEAIYFCTHYMEHCMIAIDLNL--SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE 138 (440)
Q Consensus 62 I~~~~l~~~~~~-~~~~~~~~~~~~i~~d~~~~~ly~~d~~~--~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 138 (440)
|...+.+|.... +.-.... +..+.+.+.+++|.++.... ..|+..++.+..... +...-..-..
T Consensus 186 i~i~d~dg~~~~~lt~~~~~--v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-----------l~~~~g~~~~ 252 (429)
T PRK01742 186 VRVADYDGFNQFIVNRSSQP--LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-----------VASFRGHNGA 252 (429)
T ss_pred EEEECCCCCCceEeccCCCc--cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-----------EecCCCccCc
Confidence 777777777644 2221222 78889999999998875432 357766665432111 1111112234
Q ss_pred -eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE
Q psy14258 139 -RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM 211 (440)
Q Consensus 139 -avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l 211 (440)
++.+.++.|+++ ..|++.++++...+.+.. ........+..|...+|+++.......+|+..+.+|...+.+
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 677778888887 257788888776665543 333456788888666677765332227899999887765443
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEec
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSW 278 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~ 278 (440)
... . ...++.+.++.|+++.. +.+..+++.+.....+.... .......+-++..|+++..
T Consensus 332 -~~~-~--~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 332 -GGR-G--YSAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSST 391 (429)
T ss_pred -cCC-C--CCccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEc
Confidence 221 1 23567777888887754 56777887665544443321 1111122333446666654
No 86
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.13 Score=44.97 Aligned_cols=193 Identities=11% Similarity=0.083 Sum_probs=105.1
Q ss_pred ceEEEEeCCCCEEEEEeC--CCCcEEEEEccCCCcEEEecCCccC----ceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258 219 PYGVTVDFPTKHVYWVDT--YLDFIDRINYDGTDRKTIRKGFPVQ----NLYDITVFENNLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~--~~~~i~~~~~dG~~~~~i~~~~~~~----~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~ 292 (440)
-.||..+ ++.+|-+-. +.++|++.++++... +.+. .+. .-.|++.-++++|.-.|..+.-++.++.+-+
T Consensus 48 TQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~-~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 48 TQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQE--IFSE-KLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred hcceeee--CCEEEEeccccccceeEEEeccCceE--EEEe-ecCCccccccceeeccceEEEEEeccceeEEEChHHhh
Confidence 4577775 567777654 445888888885432 2221 122 2358888999999999998888888876544
Q ss_pred ceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccE-EEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEE
Q psy14258 293 DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAI-IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371 (440)
Q Consensus 293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~-I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy 371 (440)
+.-.+.-...-.++.-...... ..+...+|.+-|....+ +.++... .--.|+..+. ...++++.||
T Consensus 123 ~lg~~~y~GeGWgLt~d~~~Li--msdGsatL~frdP~tfa~~~~v~VT------~~g~pv~~LN-----ELE~VdG~ly 189 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDDKNLI--MSDGSATLQFRDPKTFAELDTVQVT------DDGVPVSKLN-----ELEWVDGELY 189 (262)
T ss_pred hhcccccCCcceeeecCCcceE--eeCCceEEEecCHHHhhhcceEEEE------ECCeeccccc-----ceeeeccEEE
Confidence 3322221112334433311000 00112333333221110 0111110 0012333332 2345678888
Q ss_pred EEECCCCeEEEEecCCCCeEEEEE------------CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 372 YAELTSYVIERRKMFGRGKEVVID------------TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 372 ~~d~~~~~I~r~~~~g~~~~~~~~------------~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
=.=..+.+|.|++++.......+. ...+-++|||.|+..+++|.|--.--.+.-+++.
T Consensus 190 ANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~ 259 (262)
T COG3823 190 ANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLD 259 (262)
T ss_pred EeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEec
Confidence 666678899999998754443332 1224589999999999999996433344444443
No 87
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.05 E-value=0.002 Score=37.32 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=24.1
Q ss_pred ccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDR 243 (440)
Q Consensus 216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~ 243 (440)
+..|.||++| .++.||++|.+.++|..
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 3579999999 99999999999998875
No 88
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.99 E-value=0.00051 Score=44.22 Aligned_cols=32 Identities=38% Similarity=0.735 Sum_probs=27.7
Q ss_pred ecccCCC-CCCCC--CCcccCCCceEEc-cCCeeee
Q psy14258 13 DADECLI-DGSCD--QTCTNTHLSYTYT-DEGFSFQ 44 (440)
Q Consensus 13 d~~~C~~-~~~Cs--~~C~n~~~~~~C~-~~g~~l~ 44 (440)
|+|||.. ...|. +.|.|+.|+|+|. ++||...
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 7899996 45887 6999999999999 9999853
No 89
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.34 Score=44.68 Aligned_cols=218 Identities=10% Similarity=0.064 Sum_probs=123.7
Q ss_pred EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce---eeeecCCcEEEe---ceEEEEec
Q psy14258 85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE---RFPMVTHKIVYP---EAIYFCTH 158 (440)
Q Consensus 85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~---avD~~~~~lY~~---~~I~~~~~ 158 (440)
..|+-..++++|++|..++ ++.+++ +..+. +. + .+.-.-.| -++--++..|++ .-....++
T Consensus 89 ~~Dv~vse~yvyvad~ssG-L~IvDI--S~P~s-------P~--~-~~~lnt~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 89 FADVRVSEEYVYVADWSSG-LRIVDI--STPDS-------PT--L-IGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hheeEecccEEEEEcCCCc-eEEEec--cCCCC-------cc--e-eccccCCceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 3455567899999998765 333333 33222 11 1 12222224 344457778888 34444555
Q ss_pred CCceEEEEEcCCCCC----ceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258 159 YMEHCMIAIDLNLSK----PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234 (440)
Q Consensus 159 dg~~~~~~~~~~~~~----P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~ 234 (440)
.....-++.. .... -..+++.- .+-|.+.++ ..+...+..-....+++..--.-|.--++-+..+|.|.+
T Consensus 156 sdpssP~lag-rya~~~~d~~~v~ISG--n~AYvA~~d---~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~v 229 (370)
T COG5276 156 SDPSSPQLAG-RYALPGGDTHDVAISG--NYAYVAWRD---GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLV 229 (370)
T ss_pred CCCCCceeee-eeccCCCCceeEEEec--CeEEEEEeC---CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEE
Confidence 4433333322 2222 24677744 678888777 367777776655555655422233444555578999999
Q ss_pred eCCCCcEEEEEccCCCcEEEecCCccCceeee---eEecCEEEEEecCCCeEEEEeccCCCceEEEecCC----CCeEEE
Q psy14258 235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDI---TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS----RPFAIH 307 (440)
Q Consensus 235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl---~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~----~p~~~~ 307 (440)
+... -+.-++.++...-++.....-..|.++ .+.+++.|+.|... .+..++..+.....+..... +..++.
T Consensus 230 vy~e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~-gl~~idisnp~spfl~ss~~t~g~~a~gi~ 307 (370)
T COG5276 230 VYDE-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAK-GLPIIDISNPPSPFLSSSLDTAGYQAAGIR 307 (370)
T ss_pred Eccc-ceEEEecCCCCCceEeeccccCCcccccceecccceeeeecccc-CceeEeccCCCCCchhccccCCCccccceE
Confidence 8654 466777777554444432224567666 78899999999643 34445544433333332222 344566
Q ss_pred EeccCCCCCCCCCceeEEeecCCccEE
Q psy14258 308 IYHRQKQPDALKPSTFLLYAKGKPAII 334 (440)
Q Consensus 308 v~~~~~qp~~~~~~~~l~~~~~~~~~I 334 (440)
++ +.|+++++.+.+.+
T Consensus 308 ay-----------~~y~yiadkn~g~v 323 (370)
T COG5276 308 AY-----------GNYNYIADKNTGAV 323 (370)
T ss_pred Ee-----------cCeeEeccCCceEE
Confidence 66 68899998865544
No 90
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.76 E-value=0.22 Score=51.23 Aligned_cols=182 Identities=10% Similarity=-0.030 Sum_probs=98.2
Q ss_pred eecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eee--ecCCcEEEe---------------
Q psy14258 89 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFP--MVTHKIVYP--------------- 150 (440)
Q Consensus 89 d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD--~~~~~lY~~--------------- 150 (440)
.+.++.||.-|..+.+|-|++++.=..+. ++-........| ++. +.++.+|..
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~---------i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~ 208 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDK---------ITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLD 208 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeece---------eEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEee
Confidence 34578899999999998888876322111 222244445555 554 333333322
Q ss_pred ------ceEEEEecCCceE--EEEEcCCCCCceEEEEcCCCCeEEEEEcCCCC-CcEEEEeCCCCCceeEEecCccCceE
Q psy14258 151 ------EAIYFCTHYMEHC--MIAIDLNLSKPRGIALDPTSGYMFFTKWGATR-PMLERSLLDGTERFPMVTHKIVYPYG 221 (440)
Q Consensus 151 ------~~I~~~~~dg~~~--~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~-~~I~r~~~dG~~~~~l~~~~~~~P~g 221 (440)
+.+.+.+.+.... .+.+ -.+|+.++++|..+++|+|..+... ..+..++. ..+..++.- .++..
T Consensus 209 ~~~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--~e~d~~vvf--ni~~i 281 (635)
T PRK02888 209 DPKKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--AERDWVVVF--NIARI 281 (635)
T ss_pred cccceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeecc--ccCceEEEE--chHHH
Confidence 3344444443211 1111 1489999999988899999643320 22332222 222222211 11111
Q ss_pred EEEeCCCCEEEEEeCCCCcEEEEEccC-----CC-cEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCC
Q psy14258 222 VTVDFPTKHVYWVDTYLDFIDRINYDG-----TD-RKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 222 l~vD~~~~~ly~~d~~~~~i~~~~~dG-----~~-~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~ 292 (440)
-++-..++..|+ ..+++-.+|... .. ...|.. -..|.|+++..| ++|.+..-++.|..++....+
T Consensus 282 ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 282 EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 122223555554 245677776432 11 223333 357999998754 999999988998888875543
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.59 E-value=0.83 Score=44.80 Aligned_cols=255 Identities=11% Similarity=0.100 Sum_probs=133.7
Q ss_pred ceEEEEecCCceEEEEEcC--CCCCceEEEEcCCCCeEEEE-EcCCCCCcEEEEeCCCCCceeEEecCccCceE------
Q psy14258 151 EAIYFCTHYMEHCMIAIDL--NLSKPRGIALDPTSGYMFFT-KWGATRPMLERSLLDGTERFPMVTHKIVYPYG------ 221 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~--~~~~P~~iavd~~~g~lywt-d~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~g------ 221 (440)
+.|+...-.|+.-+.++.- ....| +.| .+++|+. |...- +.|+..++||...+.=..-.-.+|.-
T Consensus 206 GklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~eG~-GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGk 279 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHEGV-GNLYSVDLDGKDLRRHTNFTDYYPRNANSDGK 279 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEecccCc-cceEEeccCCchhhhcCCchhccccccCCCCc
Confidence 5677777677555555542 23334 333 4566664 55544 89999999998654322111223332
Q ss_pred -EEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCce----eeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258 222 -VTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNL----YDITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295 (440)
Q Consensus 222 -l~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p----~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~ 295 (440)
|.+. .++.+|.-|..+.++++++++ -..+..-.. .+..| ...++..+..+..- ..++.+.++...|-..+
T Consensus 280 rIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~--k~~~pskyledfa~~~Gd~ia~V-SRGkaFi~~~~~~~~iq 355 (668)
T COG4946 280 RIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQP--KFVNPSKYLEDFAVVNGDYIALV-SRGKAFIMRPWDGYSIQ 355 (668)
T ss_pred EEEEe-cCCcEEEeCCCcCcceeeecCCccccccccc--cccCHHHhhhhhccCCCcEEEEE-ecCcEEEECCCCCeeEE
Confidence 3333 556677777777777777765 222111000 01222 22333333222222 24556666655443333
Q ss_pred EEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258 296 TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375 (440)
Q Consensus 296 ~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~ 375 (440)
+- .+.++.-.+-+.- ++. +++++.....+-..+.++. ++.....++.+..++.+++.++++.+++
T Consensus 356 v~----~~~~VrY~r~~~~-----~e~-~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaN- 420 (668)
T COG4946 356 VG----KKGGVRYRRIQVD-----PEG-DVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVAN- 420 (668)
T ss_pred cC----CCCceEEEEEccC-----Ccc-eEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEc-
Confidence 22 2333332222221 232 2232222235666666666 4444556778889999999888887776
Q ss_pred CCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeC---CCCeEEEEEeCC
Q psy14258 376 TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA---GIGTINVAKISD 430 (440)
Q Consensus 376 ~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~---~~~~I~~~~~~g 430 (440)
....|..++++..+.+.+=....+...+++.-+.++.|=.+=. -+..|..++++|
T Consensus 421 dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 421 DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 4678999999866655543333344455554444444322211 134678888777
No 92
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.54 Score=41.28 Aligned_cols=191 Identities=13% Similarity=0.118 Sum_probs=105.9
Q ss_pred CCcEEEe------ceEEEEecCCceEEEEEcCCCC----CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEe
Q psy14258 144 THKIVYP------EAIYFCTHYMEHCMIAIDLNLS----KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT 213 (440)
Q Consensus 144 ~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~----~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~ 213 (440)
++++|-+ .+|.+.++.+... +.+..+. .-.||+. ...++|--.|.. +.-...+.|.- +.+-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~--~~s~~l~~~~~FgEGit~--~gd~~y~LTw~e--gvaf~~d~~t~--~~lg~ 126 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQE--IFSEKLAPDTVFGEGITK--LGDYFYQLTWKE--GVAFKYDADTL--EELGR 126 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceE--EEEeecCCccccccceee--ccceEEEEEecc--ceeEEEChHHh--hhhcc
Confidence 4567776 5789999985442 2333333 2356665 246677666665 24444444321 11111
Q ss_pred cC-ccCceEEEEeCCCCEEEEEeCCCCcEEEEEccC----CCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEec
Q psy14258 214 HK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDG----TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNK 288 (440)
Q Consensus 214 ~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG----~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~ 288 (440)
-+ -+.-.||+-| ..+|..+| ++..+..-+... ..+.+-..+..+..-.-+..-.+.||---|.+.+|.++++
T Consensus 127 ~~y~GeGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 127 FSYEGEGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDP 203 (262)
T ss_pred cccCCcceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcC
Confidence 00 1223477775 55555554 444444433211 1112222233344455677778899999999999999999
Q ss_pred cCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCC
Q psy14258 289 FNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE 368 (440)
Q Consensus 289 ~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~ 368 (440)
.+|+....+.-.. .++ -+++++. ...-+.|||||+..+
T Consensus 204 ~sGrV~~widlS~-----------L~~--------------------~~~~~~~-----------~~nvlNGIA~~~~~~ 241 (262)
T COG3823 204 DSGRVVAWIDLSG-----------LLK--------------------ELNLDKS-----------NDNVLNGIAHDPQQD 241 (262)
T ss_pred CCCcEEEEEEccC-----------Cch--------------------hcCcccc-----------ccccccceeecCcCC
Confidence 9887665332100 000 0111111 123478999999999
Q ss_pred EEEEEECCCCeEEEEecCC
Q psy14258 369 YIYYAELTSYVIERRKMFG 387 (440)
Q Consensus 369 ~vy~~d~~~~~I~r~~~~g 387 (440)
++|++-..=-.++.+.+.+
T Consensus 242 r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 242 RFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred eEEEecCcCceeEEEEecC
Confidence 9999976555677666654
No 93
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.47 E-value=0.79 Score=43.02 Aligned_cols=254 Identities=8% Similarity=0.001 Sum_probs=131.4
Q ss_pred ceeEEEEeecccceeeeEEEecCCC-ceeeeee-cccceEEEEEeeecccEEEEEEcCCCCceeEEeC------CCCCcc
Q psy14258 46 VKTHLYETIEAFWEECFGPMDIEEW-DEGLSFL-TFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALD------PTSGYM 117 (440)
Q Consensus 46 ~~~ll~s~~~~~~~~~I~~~~l~~~-~~~~~~~-~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~------~~~~~~ 117 (440)
.-+|.+++-+. +++..+.++.. ...+... +.. +.|++.+. ++||.+... .|++.... +.....
T Consensus 17 ~~Sla~sTYQa---gkL~~ig~~~~g~l~~~~r~F~r--~MGl~~~~--~~l~~~t~~--qiw~f~~~~n~l~~~~~~~~ 87 (335)
T TIGR03032 17 KLSLAVTTYQA---GKLFFIGLQPNGELDVFERTFPR--PMGLAVSP--QSLTLGTRY--QLWRFANVDNLLPAGQTHPG 87 (335)
T ss_pred CeEEEEEeeec---ceEEEEEeCCCCcEEEEeeccCc--cceeeeeC--CeEEEEEcc--eeEEcccccccccccccCCC
Confidence 34566766544 44666655422 1222222 333 88888764 789988774 56655111 000011
Q ss_pred eeeccccccceeeccccccce-eeeecCCcEEEeceEEEE--ecCCceE----------EEEEcCCCCCceEEEEcCCCC
Q psy14258 118 FFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYPEAIYFC--THYMEHC----------MIAIDLNLSKPRGIALDPTSG 184 (440)
Q Consensus 118 ~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~~~I~~~--~~dg~~~----------~~~~~~~~~~P~~iavd~~~g 184 (440)
...--..+...+ ++--.... |+ ..+.+++.++.+.| .++.... ..+..++-=+-.|+|++- ..
T Consensus 88 ~D~~yvPr~~~~-TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~ 163 (335)
T TIGR03032 88 YDRLYVPRASYV-TGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GE 163 (335)
T ss_pred CCeEEeeeeeee-ccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-Ce
Confidence 100001111112 22224454 54 45556666333332 3333221 111122333577999964 33
Q ss_pred eEEEEEcCCC-CCcEEEEeC-CCCCc-----eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecC
Q psy14258 185 YMFFTKWGAT-RPMLERSLL-DGTER-----FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG 257 (440)
Q Consensus 185 ~lywtd~~~~-~~~I~r~~~-dG~~~-----~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~ 257 (440)
--|+|-.+.. .+.=+|-.. +|.-. -+++.+++..|.+.-. .+++||++|.+.+.+.+++.+.+..+.+..-
T Consensus 164 p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 164 PRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred EEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence 4666654331 122233222 22110 1234456778888888 5899999999999999999985555555542
Q ss_pred CccCceeeeeEecCEEEEEecCCC-------------------eEEEEeccCCCceEEEe---cCCCCeEEEEeccCCCC
Q psy14258 258 FPVQNLYDITVFENNLFVTSWRNQ-------------------SIIRVNKFNSDDYETIA---NFSRPFAIHIYHRQKQP 315 (440)
Q Consensus 258 ~~~~~p~gl~~~~~~ly~td~~~~-------------------~i~~~~~~~g~~~~~~~---~~~~p~~~~v~~~~~qp 315 (440)
-..|.||++.++.++++-+... .|+.+|..+|.....+. .....+++++.-..++|
T Consensus 242 --pG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r~P 319 (335)
T TIGR03032 242 --PGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVRRP 319 (335)
T ss_pred --CCCCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCCCc
Confidence 2479999999888888754321 25555665555444221 22234556555444554
Q ss_pred C
Q psy14258 316 D 316 (440)
Q Consensus 316 ~ 316 (440)
.
T Consensus 320 ~ 320 (335)
T TIGR03032 320 E 320 (335)
T ss_pred c
Confidence 3
No 94
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.19 E-value=1.2 Score=42.42 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=135.9
Q ss_pred ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC-------CCcEEEEeCCCCCc--eeEEec-----Cc
Q psy14258 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT-------RPMLERSLLDGTER--FPMVTH-----KI 216 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~-------~~~I~r~~~dG~~~--~~l~~~-----~~ 216 (440)
+++.+.+-|.....-.+..++ --.+++.|.++.+|.++..-+ ..-|+..+...-.. ++.+.. .+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 577777766554433333333 334778898888998763110 01244444433211 112221 13
Q ss_pred cCceEEEEeCCCCEEEEEeCC-CCcEEEEEccCCCc-EEEecCCccCceeeeeEe-cCEEEEEecCCCeEEEEeccC-CC
Q psy14258 217 VYPYGVTVDFPTKHVYWVDTY-LDFIDRINYDGTDR-KTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSIIRVNKFN-SD 292 (440)
Q Consensus 217 ~~P~gl~vD~~~~~ly~~d~~-~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~-~~~ly~td~~~~~i~~~~~~~-g~ 292 (440)
.+++-+++...++++|+.+.. ...|..+|+..... ..+. .+...++-=. ++. |.+--..+++..+.... |+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRG-FSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE----GTSEEEEEEEETTE-EEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec----CCCEEEEEecCCCc-eEEEecCCceEEEEECCCCC
Confidence 456677887789999998854 34888888876543 2222 2222333222 334 44555678888777663 54
Q ss_pred ceEEEecCCCCeEEEEeccCCCCCCCCC------ceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC--------Cc
Q psy14258 293 DYETIANFSRPFAIHIYHRQKQPDALKP------STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK--------RP 358 (440)
Q Consensus 293 ~~~~~~~~~~p~~~~v~~~~~qp~~~~~------~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~--------~p 358 (440)
+..... .+|++...|....| ..++|.+-. +.|+.+++.+.... ...+..-+. +|
T Consensus 170 ~~~~~t--------~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~--G~v~~~dlsg~~~~--~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 170 EAQKST--------KVFDPDDDPLFEHPAYSRDGGRLYFVSYE--GNVYSADLSGDSAK--FGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp EEEEEE--------EESSTTTS-B-S--EEETTTTEEEEEBTT--SEEEEEEETTSSEE--EEEEEESS-HHHHHTTEEE
T ss_pred EeEeec--------cccCCCCcccccccceECCCCeEEEEecC--CEEEEEeccCCccc--ccCcccccCccccccCcCC
Confidence 432211 35666666544322 245666555 99999999887211 111221111 33
Q ss_pred e---EEEEEcCCCEEEEEE---------CCCCeEEEEecCCCCeEEEEECCCC-CeeeEEEecCCC-cEEEEeCCCCeEE
Q psy14258 359 S---VIDYHEKEEYIYYAE---------LTSYVIERRKMFGRGKEVVIDTGIY-NVEGMAVDWMAN-NLYWTDAGIGTIN 424 (440)
Q Consensus 359 ~---~l~~d~~~~~vy~~d---------~~~~~I~r~~~~g~~~~~~~~~~~~-~~~glAvD~~~~-~lYwtd~~~~~I~ 424 (440)
. -+|+++..++||+.= .....|+.+++....+-.-+. +. ....|+|--..+ .||-++.+.+.+.
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEE
Confidence 3 489999999999872 112357777776533222121 11 233666665444 6776777777777
Q ss_pred EEEeC
Q psy14258 425 VAKIS 429 (440)
Q Consensus 425 ~~~~~ 429 (440)
+++..
T Consensus 316 v~D~~ 320 (342)
T PF06433_consen 316 VYDAA 320 (342)
T ss_dssp EEETT
T ss_pred EEeCc
Confidence 77744
No 95
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.73 E-value=2 Score=41.03 Aligned_cols=280 Identities=10% Similarity=0.041 Sum_probs=133.9
Q ss_pred eeEEEecCCCcee--eeeecccceEEEEEeeecccEEEEEEcCCCCceeEEe-------CCCCCcceeeccccccceeec
Q psy14258 61 CFGPMDIEEWDEG--LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIAL-------DPTSGYMFFTKWGATRPMLER 131 (440)
Q Consensus 61 ~I~~~~l~~~~~~--~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~-------~~~~~~~~~~~~~~~~v~~~~ 131 (440)
++..++.+....- +...... .+.+++.++.+|.++..-.|+-|... +...+.. ..++.+-.
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~----~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~------~~EI~iP~ 87 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLG----NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP------TGEIEIPP 87 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSE----EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE------EEEEEETT
T ss_pred eEEEEECCCCcEEEEeecccCC----ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc------cceEecCC
Confidence 3666666655443 3333322 24567888999988876555444332 2222211 11222211
Q ss_pred -----cccccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEE
Q psy14258 132 -----SLLDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER 200 (440)
Q Consensus 132 -----~~~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r 200 (440)
.+..+.. ++-..++.+|+. ..|.+.++.......-+. .|-.--+-|....=|.+-=+. +++..
T Consensus 88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~F~~lC~D--Gsl~~ 161 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRGFSMLCGD--GSLLT 161 (342)
T ss_dssp S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE----GTSEEEEEEEETTEEEEEETT--SCEEE
T ss_pred cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec----CCCEEEEEecCCCceEEEecC--CceEE
Confidence 1344555 787788889988 789999998876433332 233322223221223332222 57777
Q ss_pred EeCCCCCceeEEecCccCc------eEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccC--------ceee-
Q psy14258 201 SLLDGTERFPMVTHKIVYP------YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ--------NLYD- 265 (440)
Q Consensus 201 ~~~dG~~~~~l~~~~~~~P------~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~--------~p~g- 265 (440)
..+|-........+.+..| +--+.+..++++||.. ..+.|+.+++.|...+....-..+. .|=|
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 7776433333222211111 1113344678899975 6789999999988765543210000 1211
Q ss_pred --eeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCC-ccEEEEEEcC
Q psy14258 266 --ITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK-PAIIKGLTFK 340 (440)
Q Consensus 266 --l~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~-~~~I~~i~~~ 340 (440)
++++ .++||+.-. .|.+ ...+ +|...+.+-|.. ..+|.|+++.
T Consensus 241 Q~~A~~~~~~rlyvLMh-----------~g~~----------------gsHK-----dpgteVWv~D~~t~krv~Ri~l~ 288 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMH-----------QGGE----------------GSHK-----DPGTEVWVYDLKTHKRVARIPLE 288 (342)
T ss_dssp S-EEEETTTTEEEEEEE-----------E--T----------------T-TT-----S-EEEEEEEETTTTEEEEEEEEE
T ss_pred eeeeeccccCeEEEEec-----------CCCC----------------CCcc-----CCceEEEEEECCCCeEEEEEeCC
Confidence 2222 234444211 0000 0000 122333333332 2678888876
Q ss_pred CCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeE-EEEecCCCCeEEE
Q psy14258 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVI-ERRKMFGRGKEVV 393 (440)
Q Consensus 341 ~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I-~r~~~~g~~~~~~ 393 (440)
.. -..+.+..-..|.=++.+..++.|++-|..++.. .++.--|.....+
T Consensus 289 ~~----~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 289 HP----IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI 338 (342)
T ss_dssp EE----ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred Cc----cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence 54 2234555556777777777778888888776653 3333334444333
No 96
>KOG0292|consensus
Probab=95.65 E-value=3.7 Score=43.65 Aligned_cols=303 Identities=10% Similarity=0.019 Sum_probs=166.0
Q ss_pred ceEEEEEeeecccEEEEEEcCCCCceeEEeCCC-CCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEE
Q psy14258 81 QEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIY 154 (440)
Q Consensus 81 ~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~ 154 (440)
+++.|++|+|..-.| .+...++.|+.-+.... -++.+ .+.-+-.+| ++-+... ||++ ..|.
T Consensus 10 sRvKglsFHP~rPwI-LtslHsG~IQlWDYRM~tli~rF-----------deHdGpVRgv~FH~~qp-lFVSGGDDykIk 76 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWI-LTSLHSGVIQLWDYRMGTLIDRF-----------DEHDGPVRGVDFHPTQP-LFVSGGDDYKIK 76 (1202)
T ss_pred ccccceecCCCCCEE-EEeecCceeeeehhhhhhHHhhh-----------hccCCccceeeecCCCC-eEEecCCccEEE
Confidence 458899999875544 44455677765544322 22221 233445677 7765544 8988 5788
Q ss_pred EEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEE
Q psy14258 155 FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234 (440)
Q Consensus 155 ~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~ 234 (440)
|-+.+...|.--+.+.++..+-+.+.++-=+|.=+... ..|...++...+-..++..--.+...-.+.|. ..|.++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDD---QTIrIWNwqsr~~iavltGHnHYVMcAqFhpt-EDlIVS 152 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDD---QTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT-EDLIVS 152 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCC---CeEEEEeccCCceEEEEecCceEEEeeccCCc-cceEEE
Confidence 88888877754444577888888888765554433322 47777777655544444443344555556533 445555
Q ss_pred eCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE---EEecCCCCeEEEEecc
Q psy14258 235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE---TIANFSRPFAIHIYHR 311 (440)
Q Consensus 235 d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~---~~~~~~~p~~~~v~~~ 311 (440)
-+-.++|+.-|+.|-..+....+..-.++.|.... .+.+++.... ++.+-.+-..-+.|||
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~----------------~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN----------------SDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccc----------------hhhcCCcCeeeeeeecccccccceEEecC
Confidence 56666777777777444333222100111111110 1122221211 1222122223345664
Q ss_pred CCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC-Ce
Q psy14258 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR-GK 390 (440)
Q Consensus 312 ~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~-~~ 390 (440)
... |+++-+....|....++-+ ..-++-..-....+..++-|+|..+ +..++...++|+.-+++-. ..
T Consensus 217 Tlp---------liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 217 TLP---------LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred Ccc---------eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccccce
Confidence 442 6665444445544444444 2223333334455677899999766 7789889999999999852 23
Q ss_pred EEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 391 ~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+++-- .-+...=||.-+ ..|||-+-..++ +.|+.++-
T Consensus 286 ~tfrr-endRFW~laahP-~lNLfAAgHDsG-m~VFkleR 322 (1202)
T KOG0292|consen 286 QTFRR-ENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLER 322 (1202)
T ss_pred eeeec-cCCeEEEEEecC-CcceeeeecCCc-eEEEEEcc
Confidence 33322 234555666664 456776655443 66666653
No 97
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.62 E-value=0.048 Score=41.02 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.8
Q ss_pred EEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 393 VIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 393 ~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
.+..++..|.||++|+..+.||+++...+.|.++...
T Consensus 48 ~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 48 VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3456899999999999999999999999999998764
No 98
>KOG0318|consensus
Probab=94.70 E-value=5.2 Score=39.97 Aligned_cols=194 Identities=15% Similarity=0.112 Sum_probs=114.3
Q ss_pred CccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCC
Q psy14258 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 215 ~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~ 292 (440)
-......|++.+.+..||-++ ..+.|..=+.. |..-+...+. .-....+++..+ +.||-..| .+.+.++....+.
T Consensus 319 HnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~-h~nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKG-HTNQIKGMAASESGELFTIGW-DDTLRVISLKDNG 395 (603)
T ss_pred cccceeEEEEcCCCCEEEeec-cCceEEEEecCCcccccccccc-ccceEEEEeecCCCcEEEEec-CCeEEEEecccCc
Confidence 345567899988887787665 45666666543 3222222221 244677888888 67776666 6677776543221
Q ss_pred c--eEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258 293 D--YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI 370 (440)
Q Consensus 293 ~--~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v 370 (440)
- ...+.-..+|.++++.. ++..++++.. ..|..+.-.+. ...+++. -+|.++|+.+.+..+
T Consensus 396 ~t~~~~~~lg~QP~~lav~~---------d~~~avv~~~--~~iv~l~~~~~----~~~~~~~--y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLS---------DGGTAVVACI--SDIVLLQDQTK----VSSIPIG--YESSAVAVSPDGSEV 458 (603)
T ss_pred ccccceeecCCCceeEEEcC---------CCCEEEEEec--CcEEEEecCCc----ceeeccc--cccceEEEcCCCCEE
Confidence 1 11233334677777762 3345666544 34433331111 1223321 267899999987765
Q ss_pred EEEECCCCeEEEEecCCCC--eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 371 YYAELTSYVIERRKMFGRG--KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 371 y~~d~~~~~I~r~~~~g~~--~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
-+- ...+.+....+.|.. .+.........+.-+|+-+.+..|-.+|. ++.+.+++...
T Consensus 459 aVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd~~s 518 (603)
T KOG0318|consen 459 AVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYDVAS 518 (603)
T ss_pred EEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEEccc
Confidence 544 345668888887754 33344455677899999988887777776 45566666553
No 99
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.64 E-value=0.1 Score=39.28 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.2
Q ss_pred eeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258 348 AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF 386 (440)
Q Consensus 348 ~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~ 386 (440)
....+.++..|.||++++..+.||+++...+.|+..+..
T Consensus 46 ~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 46 VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 345566788999999999999999999999999887653
No 100
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.50 E-value=0.21 Score=31.55 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=31.0
Q ss_pred cCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEe
Q psy14258 365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD 407 (440)
Q Consensus 365 ~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD 407 (440)
+.+++||+++...++|..++........-+..+ ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 357899999999999999998654333334443 679999874
No 101
>KOG1274|consensus
Probab=94.29 E-value=8.9 Score=40.93 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=110.3
Q ss_pred eEEEEeCCCCEEEEEeCCCCcEEEEE--ccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258 220 YGVTVDFPTKHVYWVDTYLDFIDRIN--YDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 220 ~gl~vD~~~~~ly~~d~~~~~i~~~~--~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~ 297 (440)
..|.+|+.+..||.++.. +.|...+ -+-..+.++... .....+++.+.. .+.+-...+.|.+...-++.+..++
T Consensus 17 t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~--g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDIS--GELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhhcc--CceeEEEeeccc-ceEEeeccceEEEeeCCCCCcccee
Confidence 467889899988888753 3344333 222445554421 123466776666 4445556788888888778777788
Q ss_pred ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCc-eEEEEEcCCCEEEEEECC
Q psy14258 298 ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRP-SVIDYHEKEEYIYYAELT 376 (440)
Q Consensus 298 ~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p-~~l~~d~~~~~vy~~d~~ 376 (440)
..+.-|.....+. .++..+.+-+....|..+.++.. .+ ...+.+...| .+|+|||.++.|-+++ .
T Consensus 93 ~Rftlp~r~~~v~---------g~g~~iaagsdD~~vK~~~~~D~-s~---~~~lrgh~apVl~l~~~p~~~fLAvss-~ 158 (933)
T KOG1274|consen 93 ARFTLPIRDLAVS---------GSGKMIAAGSDDTAVKLLNLDDS-SQ---EKVLRGHDAPVLQLSYDPKGNFLAVSS-C 158 (933)
T ss_pred eeeeccceEEEEe---------cCCcEEEeecCceeEEEEecccc-ch---heeecccCCceeeeeEcCCCCEEEEEe-c
Confidence 8887676654442 24445555454567777777666 33 2333344444 4899999888666655 5
Q ss_pred CCeEEEEecCCCCeEEEE-------ECCCC-CeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 377 SYVIERRKMFGRGKEVVI-------DTGIY-NVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 377 ~~~I~r~~~~g~~~~~~~-------~~~~~-~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
.|.++..++........+ ..... ...=+|--+.+|.|-..- ..+.|.+++.+|
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKG 219 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCC
Confidence 778887777632111110 01101 122345555555444432 246777777665
No 102
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=94.13 E-value=0.025 Score=31.20 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.9
Q ss_pred Cceec-CCCCceeeccc
Q psy14258 1 MTFRG-PNKTQCVDADE 16 (440)
Q Consensus 1 ~~~~~-~~~~~C~d~~~ 16 (440)
.||++ +|+++|+|+||
T Consensus 8 ~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 8 PGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CCCcCCCCCCccccCCC
Confidence 47886 89999999987
No 103
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.79 E-value=2.3 Score=41.87 Aligned_cols=136 Identities=13% Similarity=0.216 Sum_probs=64.6
Q ss_pred EecCEEEEEecCCCeEE-EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC-C
Q psy14258 268 VFENNLFVTSWRNQSII-RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT-T 345 (440)
Q Consensus 268 ~~~~~ly~td~~~~~i~-~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~-~ 345 (440)
.++..|.+=||..+++. .++. |.+-. .|..+...|.-.. .-+|.=.|-+ +.|+++--+..+. .
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idL--g~~g~------~pLEvRflH~P~~-----~~gFvg~aLs--s~i~~~~k~~~g~W~ 283 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDL--GEEGQ------MPLEVRFLHDPDA-----NYGFVGCALS--SSIWRFYKDDDGEWA 283 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES---TTEE------EEEEEEE-SSTT-------EEEEEEE----EEEEEEEE-ETTEEE
T ss_pred cccCeEEEEECCCCcEeeEEec--CCCCC------ceEEEEecCCCCc-----cceEEEEecc--ceEEEEEEcCCCCee
Confidence 57788888898877654 3343 11111 2445555552111 1244444433 6777766533321 1
Q ss_pred ceeeeeecC----------C--------CCceEEEEEcCCCEEEEEECCCCeEEEEecCC-CCeEEEEECCC--------
Q psy14258 346 EQAIMPITD----------L--------KRPSVIDYHEKEEYIYYAELTSYVIERRKMFG-RGKEVVIDTGI-------- 398 (440)
Q Consensus 346 ~~~~~~~~~----------~--------~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-~~~~~~~~~~~-------- 398 (440)
.+..+.+.. + .-++.|.+..++++||++....+.|+..++.- .+.+.+.+..+
T Consensus 284 a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~ 363 (461)
T PF05694_consen 284 AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGD 363 (461)
T ss_dssp EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence 111221111 0 12467888889999999999999999999865 33443332111
Q ss_pred ----------CCeeeEEEecCCCcEEEEeC
Q psy14258 399 ----------YNVEGMAVDWMANNLYWTDA 418 (440)
Q Consensus 399 ----------~~~~glAvD~~~~~lYwtd~ 418 (440)
+.|.=|.+-+.+++||||++
T Consensus 364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS------S----EEE-TTSSEEEEE--
T ss_pred CccccccccCCCCCeEEEccCCeEEEEEee
Confidence 24677888899999999986
No 104
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.69 E-value=8.1 Score=38.39 Aligned_cols=238 Identities=9% Similarity=0.094 Sum_probs=129.2
Q ss_pred eeeecCCcEEEe--------ceEEEEecCCceE-EEEEcCCCCCceEEEEcCCCCeEEEEEcCCC--------CCcEEEE
Q psy14258 139 RFPMVTHKIVYP--------EAIYFCTHYMEHC-MIAIDLNLSKPRGIALDPTSGYMFFTKWGAT--------RPMLERS 201 (440)
Q Consensus 139 avD~~~~~lY~~--------~~I~~~~~dg~~~-~~~~~~~~~~P~~iavd~~~g~lywtd~~~~--------~~~I~r~ 201 (440)
++.+.++.|-++ ..+.+.+++.... ...+. .....+++--+.+..+|++..... ..+|++.
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 666777777666 3578888865432 21111 112234777776567888876542 2468888
Q ss_pred eCCCCCce--eEEecC--ccCceEEEEeCCCCEEEEEeCCC---CcEEEEEccCC-----CcEEEecCCccCceeeeeEe
Q psy14258 202 LLDGTERF--PMVTHK--IVYPYGVTVDFPTKHVYWVDTYL---DFIDRINYDGT-----DRKTIRKGFPVQNLYDITVF 269 (440)
Q Consensus 202 ~~dG~~~~--~l~~~~--~~~P~gl~vD~~~~~ly~~d~~~---~~i~~~~~dG~-----~~~~i~~~~~~~~p~gl~~~ 269 (440)
.+.....+ .++... ..+-.++.....+..|++.-... ..++.++++.. ..+.+.... -..-..+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~ 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHH 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEE
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEcc
Confidence 88765444 343332 11234677777778877644322 36777887653 344444421 2334456666
Q ss_pred cCEEEE-Eec--CCCeEEEEeccCCCc---e-EEEecCC--CCeEEEEeccCCCCCCCCCceeEEeecC--CccEEEEEE
Q psy14258 270 ENNLFV-TSW--RNQSIIRVNKFNSDD---Y-ETIANFS--RPFAIHIYHRQKQPDALKPSTFLLYAKG--KPAIIKGLT 338 (440)
Q Consensus 270 ~~~ly~-td~--~~~~i~~~~~~~g~~---~-~~~~~~~--~p~~~~v~~~~~qp~~~~~~~~l~~~~~--~~~~I~~i~ 338 (440)
++.+|+ |+. .+++|.+++...... . .++.... ...++.++ +.+|++... ...+|..++
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-----------~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-----------KDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-----------TTEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-----------CCEEEEEEEECCccEEEEEE
Confidence 887776 543 457888888766542 2 2232222 23344444 345554433 346788888
Q ss_pred cC-CCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC---CCCeEEEEecCCCCeEEE
Q psy14258 339 FK-RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL---TSYVIERRKMFGRGKEVV 393 (440)
Q Consensus 339 ~~-~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~---~~~~I~r~~~~g~~~~~~ 393 (440)
++ +. ....+++.......++..++.++.+++.-. .-.+|+++++.....+++
T Consensus 356 ~~~~~---~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 356 LDDGK---ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp TT-TE---EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred CCCCc---EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 87 33 123344444444456666777787777743 246788888886555443
No 105
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.59 E-value=8.7 Score=38.42 Aligned_cols=132 Identities=11% Similarity=0.050 Sum_probs=71.4
Q ss_pred eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258 139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212 (440)
Q Consensus 139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~ 212 (440)
++-+.+++|.++ ..|.+.+++++....+.. ....-..=..-|...+|+++......+.|++++++|+..+.+.
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT 322 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT 322 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee
Confidence 677778888888 479999999988555332 1111112223344456666543333389999999999876555
Q ss_pred ecCccCceEEEEeCCCCEEEEEeCCCCc--EEEEEcc-CCCcEEEecCCccCceeeeeEecCEE
Q psy14258 213 THKIVYPYGVTVDFPTKHVYWVDTYLDF--IDRINYD-GTDRKTIRKGFPVQNLYDITVFENNL 273 (440)
Q Consensus 213 ~~~~~~P~gl~vD~~~~~ly~~d~~~~~--i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~~l 273 (440)
... ....--.+.+.+.+|-+.....+. |...++. |.. ..++.......+-..+..+..+
T Consensus 323 ~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i 384 (425)
T COG0823 323 FSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMI 384 (425)
T ss_pred ccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceE
Confidence 432 222233455566666666533333 4444332 222 2333322234444455555533
No 106
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.52 E-value=5.5 Score=35.87 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=97.8
Q ss_pred CCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEE-ecC-C--
Q psy14258 227 PTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI-ANF-S-- 301 (440)
Q Consensus 227 ~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~-~~~-~-- 301 (440)
.++++|.++ ..+.+..++. +|...........+..+ ..+.++.+|+... .+.|+.++..+|+..-.. ... +
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVVDGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEEETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eeecccccccccc-eeeeEecccCCcceeeeecccccccc
Confidence 488899885 6678999987 56443333222112222 3678889998874 458999998788775442 211 1
Q ss_pred ---CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee--eeecC--CCC--------ceEEEEEcC
Q psy14258 302 ---RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI--MPITD--LKR--------PSVIDYHEK 366 (440)
Q Consensus 302 ---~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~--~~~~~--~~~--------p~~l~~d~~ 366 (440)
.+....+. +..++++.. .+.|+.+++... ... .++.. ... ...+.+ .
T Consensus 111 ~~~~~~~~~~~-----------~~~~~~~~~-~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~ 172 (238)
T PF13360_consen 111 GVRSSSSPAVD-----------GDRLYVGTS-SGKLVALDPKTG----KLLWKYPVGEPRGSSPISSFSDINGSPVI--S 172 (238)
T ss_dssp STB--SEEEEE-----------TTEEEEEET-CSEEEEEETTTT----EEEEEEESSTT-SS--EEEETTEEEEEEC--C
T ss_pred ccccccCceEe-----------cCEEEEEec-cCcEEEEecCCC----cEEEEeecCCCCCCcceeeecccccceEE--E
Confidence 11122222 244555542 277777776543 111 11111 000 012222 2
Q ss_pred CCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeee-EEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG-MAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 367 ~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~g-lAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
++.+|+++.... +..++..... ..- ...+..+.+ +.. .++.||.++ ..+.|..+++..
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg~-~~w-~~~~~~~~~~~~~--~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATGE-KLW-SKPISGIYSLPSV--DGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTTE-EEE-EECSS-ECECEEC--CCTEEEEEE-TTTEEEEEETTT
T ss_pred CCEEEEEcCCCe-EEEEECCCCC-EEE-EecCCCccCCcee--eCCEEEEEe-CCCEEEEEECCC
Confidence 568998875443 5555666543 233 333555665 444 488999998 678999999875
No 107
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=6.5 Score=36.62 Aligned_cols=219 Identities=10% Similarity=0.105 Sum_probs=118.3
Q ss_pred cCCcEEEe---ceEEEEecCCceEEEEEc-CCC-CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258 143 VTHKIVYP---EAIYFCTHYMEHCMIAID-LNL-SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217 (440)
Q Consensus 143 ~~~~lY~~---~~I~~~~~dg~~~~~~~~-~~~-~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~ 217 (440)
..+..|++ .-+...+......-+++. -.+ ..-++..+ -..+.|++|+.. .....++.-....++.. ...
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadldd---gfLivdvsdpssP~lag-rya 168 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDD---GFLIVDVSDPSSPQLAG-RYA 168 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccC---cEEEEECCCCCCceeee-eec
Confidence 45567777 445555555433323322 122 33455555 347899999863 55666665554444432 223
Q ss_pred Cce----EEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258 218 YPY----GVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 218 ~P~----gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~ 292 (440)
.|. .+++ .+++-|++.... -+..++.... ++..+-.-..-..-+++.+..++.|.++.. ..+..++..+-+
T Consensus 169 ~~~~d~~~v~I--SGn~AYvA~~d~-GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-egvlivd~s~~s 244 (370)
T COG5276 169 LPGGDTHDVAI--SGNYAYVAWRDG-GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-EGVLIVDVSGPS 244 (370)
T ss_pred cCCCCceeEEE--ecCeEEEEEeCC-CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-cceEEEecCCCC
Confidence 333 4666 689999997654 4666666543 344433311123668888999999999974 455566665444
Q ss_pred ceEEEe--cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc-eeeeeecCCCCceEEEEEcCCCE
Q psy14258 293 DYETIA--NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE-QAIMPITDLKRPSVIDYHEKEEY 369 (440)
Q Consensus 293 ~~~~~~--~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~-~~~~~~~~~~~p~~l~~d~~~~~ 369 (440)
..+++. ..+.|.++.-+ ..++.++|+++.. ..+..++......+. ...++..+- +..+|.. -+++
T Consensus 245 sp~~~gsyet~~p~~~s~v--------~Vs~~~~Yvadga-~gl~~idisnp~spfl~ss~~t~g~-~a~gi~a--y~~y 312 (370)
T COG5276 245 SPTVFGSYETSNPVSISTV--------PVSGEYAYVADGA-KGLPIIDISNPPSPFLSSSLDTAGY-QAAGIRA--YGNY 312 (370)
T ss_pred CceEeeccccCCcccccce--------ecccceeeeeccc-cCceeEeccCCCCCchhccccCCCc-cccceEE--ecCe
Confidence 444443 22245444211 0246889999874 333444443331111 001111111 2334433 4789
Q ss_pred EEEEECCCCeEEEE
Q psy14258 370 IYYAELTSYVIERR 383 (440)
Q Consensus 370 vy~~d~~~~~I~r~ 383 (440)
+|++|...+.+.-+
T Consensus 313 ~yiadkn~g~vV~~ 326 (370)
T COG5276 313 NYIADKNTGAVVDA 326 (370)
T ss_pred eEeccCCceEEEeC
Confidence 99999877766544
No 108
>KOG0285|consensus
Probab=93.43 E-value=7.4 Score=37.09 Aligned_cols=276 Identities=10% Similarity=0.043 Sum_probs=147.4
Q ss_pred eeccccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258 129 LERSLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL 203 (440)
Q Consensus 129 ~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~ 203 (440)
+...++=.+. |||+.+ .+|.+ ..|..-++.......-+.+-....++++|.+.+-|||-+-.+ ..|...++
T Consensus 147 i~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged---k~VKCwDL 222 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED---KQVKCWDL 222 (460)
T ss_pred hhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC---CeeEEEec
Confidence 3455666888 999874 47777 568888998777665556567889999999999999987655 47888887
Q ss_pred CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCcee-eeeEe--cCEEEEEecCC
Q psy14258 204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY-DITVF--ENNLFVTSWRN 280 (440)
Q Consensus 204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~-gl~~~--~~~ly~td~~~ 280 (440)
.-...-.-...-+.....|++.|.-+.|+ +-.....+..-|+.......++.+ -..|. .+... +..||-. ...
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~-t~grDst~RvWDiRtr~~V~~l~G--H~~~V~~V~~~~~dpqvit~-S~D 298 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLV-TGGRDSTIRVWDIRTRASVHVLSG--HTNPVASVMCQPTDPQVITG-SHD 298 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEE-ecCCcceEEEeeecccceEEEecC--CCCcceeEEeecCCCceEEe-cCC
Confidence 43211111122344566778875555544 444445555555554433333333 12232 22221 2344433 345
Q ss_pred CeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC-CCc
Q psy14258 281 QSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL-KRP 358 (440)
Q Consensus 281 ~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~-~~p 358 (440)
..|.--+...|+...++..-. ....+ ..| |+.++|.+.+ ...|....+... .....+.+. ...
T Consensus 299 ~tvrlWDl~agkt~~tlt~hkksvral-~lh---------P~e~~fASas-~dnik~w~~p~g----~f~~nlsgh~~ii 363 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHHKKSVRAL-CLH---------PKENLFASAS-PDNIKQWKLPEG----EFLQNLSGHNAII 363 (460)
T ss_pred ceEEEeeeccCceeEeeecccceeeEE-ecC---------CchhhhhccC-CccceeccCCcc----chhhcccccccee
Confidence 666666776777665443222 12222 222 4555555433 345554444322 001111110 012
Q ss_pred eEEEEEcCCCEEEEEECCCCeEEEEecCC-CCe---EEEEECCC----CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 359 SVIDYHEKEEYIYYAELTSYVIERRKMFG-RGK---EVVIDTGI----YNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 359 ~~l~~d~~~~~vy~~d~~~~~I~r~~~~g-~~~---~~~~~~~~----~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
..++.+ .+-+|++-...+.|.--+... -+. ++++..|- .+.....+|-.+-+|--.. ...+|++..-|-
T Consensus 364 ntl~~n--sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e-adKtIk~~keDe 440 (460)
T KOG0285|consen 364 NTLSVN--SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE-ADKTIKMYKEDE 440 (460)
T ss_pred eeeeec--cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc-CCcceEEEeccc
Confidence 234443 344777776677777666643 221 22333221 2345667885554554444 455788877654
No 109
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.31 E-value=8.7 Score=37.59 Aligned_cols=100 Identities=8% Similarity=0.033 Sum_probs=52.1
Q ss_pred eEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc
Q psy14258 267 TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE 346 (440)
Q Consensus 267 ~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~ 346 (440)
.+.++.+|.+.. .+.++.++..+|+..-... ........+ .++.+|+... .+.++.++.+.....-
T Consensus 238 ~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~-~~~~~~p~~-----------~~~~vyv~~~-~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 238 VVDGGQVYAVSY-QGRVAALDLRSGRVLWKRD-ASSYQGPAV-----------DDNRLYVTDA-DGVVVALDRRSGSELW 303 (377)
T ss_pred EEECCEEEEEEc-CCEEEEEECCCCcEEEeec-cCCccCceE-----------eCCEEEEECC-CCeEEEEECCCCcEEE
Confidence 456789999876 5788899987775432111 111111111 2466776654 3778888875431100
Q ss_pred ee-eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258 347 QA-IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF 386 (440)
Q Consensus 347 ~~-~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~ 386 (440)
.. ...-.....|. + .++.||..+ ..+.|+.++.+
T Consensus 304 ~~~~~~~~~~ssp~---i--~g~~l~~~~-~~G~l~~~d~~ 338 (377)
T TIGR03300 304 KNDELKYRQLTAPA---V--VGGYLVVGD-FEGYLHWLSRE 338 (377)
T ss_pred ccccccCCccccCE---E--ECCEEEEEe-CCCEEEEEECC
Confidence 00 00000111221 2 256788776 46678887775
No 110
>KOG0285|consensus
Probab=93.13 E-value=8.2 Score=36.78 Aligned_cols=239 Identities=15% Similarity=0.180 Sum_probs=127.7
Q ss_pred EEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258 166 AIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN 245 (440)
Q Consensus 166 ~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~ 245 (440)
++...++..+.++|||. .=|++....+ ..|...++.....+.-+..-+....|+++....-.||-+- ....|..-|
T Consensus 146 Vi~gHlgWVr~vavdP~--n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwD 221 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPG--NEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWD 221 (460)
T ss_pred hhhhccceEEEEeeCCC--ceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEe
Confidence 34557889999999995 3344443333 5777778765444333333456678999986666666552 344566666
Q ss_pred ccCCCcEEEec-CCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCcee
Q psy14258 246 YDGTDRKTIRK-GFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTF 323 (440)
Q Consensus 246 ~dG~~~~~i~~-~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~ 323 (440)
+.-. ++|.. ...+...+.++++.- .+.+|-...-.+..-+..+-..+.++.+-..|..-.+. ||. ++
T Consensus 222 Le~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~----~~~----dp- 290 (460)
T KOG0285|consen 222 LEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC----QPT----DP- 290 (460)
T ss_pred chhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe----ecC----CC-
Confidence 5432 33322 113666778888743 55566554444444465555555555543333332222 110 11
Q ss_pred EEeecCCccEEEEEEcCCCCCCceeeeee-cCCCCceEEEEEcCCCEEEEEECCCCeEEEEecC-CCCeEEEEECCCCCe
Q psy14258 324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPI-TDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF-GRGKEVVIDTGIYNV 401 (440)
Q Consensus 324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~-~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~-g~~~~~~~~~~~~~~ 401 (440)
-+++-+..+.|+..++... .....+ ..-...++++.+|.+. + +++...+.|..-++- |.-..- ++..-...
T Consensus 291 qvit~S~D~tvrlWDl~ag----kt~~tlt~hkksvral~lhP~e~-~-fASas~dnik~w~~p~g~f~~n-lsgh~~ii 363 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAG----KTMITLTHHKKSVRALCLHPKEN-L-FASASPDNIKQWKLPEGEFLQN-LSGHNAII 363 (460)
T ss_pred ceEEecCCceEEEeeeccC----ceeEeeecccceeeEEecCCchh-h-hhccCCccceeccCCccchhhc-ccccccee
Confidence 1233333456666665433 122222 2233566888888654 3 455566677766653 321111 11111234
Q ss_pred eeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258 402 EGMAVDWMANNLYWTDAGIGTINVAKI 428 (440)
Q Consensus 402 ~glAvD~~~~~lYwtd~~~~~I~~~~~ 428 (440)
..|++. +..+|++-..++.|.--+.
T Consensus 364 ntl~~n--sD~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 364 NTLSVN--SDGVLVSGGDNGSIMFWDW 388 (460)
T ss_pred eeeeec--cCceEEEcCCceEEEEEec
Confidence 556665 5567777777776665553
No 111
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.04 E-value=7.2 Score=35.89 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCCcEEEEeC------CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE-EE-
Q psy14258 183 SGYMFFTKWGATRPMLERSLL------DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK-TI- 254 (440)
Q Consensus 183 ~g~lywtd~~~~~~~I~r~~~------dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~-~i- 254 (440)
..++||++.... ..+..... .+...+...-.-...-.|..+ -++-||+--.....|.+.++...... ..
T Consensus 30 ~~~iy~~~~~~~-~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vV--YngslYY~~~~s~~IvkydL~t~~v~~~~~ 106 (250)
T PF02191_consen 30 SEKIYVTSGFSG-NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVV--YNGSLYYNKYNSRNIVKYDLTTRSVVARRE 106 (250)
T ss_pred CCCEEEECccCC-CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEE--ECCcEEEEecCCceEEEEECcCCcEEEEEE
Confidence 568999887654 34444321 222222221111223346666 58899998888899999999876655 22
Q ss_pred ecCCccC--ce--------eeeeEecCE---EEEEecCCCe--EEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCC
Q psy14258 255 RKGFPVQ--NL--------YDITVFENN---LFVTSWRNQS--IIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDAL 318 (440)
Q Consensus 255 ~~~~~~~--~p--------~gl~~~~~~---ly~td~~~~~--i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~ 318 (440)
+.+.... .| ..+|++|.- ||-+....+. |.++|..+-...++.. ...++..-..|
T Consensus 107 L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naF--------- 177 (250)
T PF02191_consen 107 LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAF--------- 177 (250)
T ss_pred CCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhccee---------
Confidence 1111111 22 467888873 3444433332 3344443333222221 12211100000
Q ss_pred CCceeEEeecCCc---cEE-EEEEcCCCCCCceeeeeecCC-CCceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258 319 KPSTFLLYAKGKP---AII-KGLTFKRDGTTEQAIMPITDL-KRPSVIDYHEKEEYIYYAELTSYVIERRKM 385 (440)
Q Consensus 319 ~~~~~l~~~~~~~---~~I-~~i~~~~~~~~~~~~~~~~~~-~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~ 385 (440)
-.-+.||..++.. .+| ...++... ....+.+++... .....|.|+|.+++||.=|.+...+|.+.+
T Consensus 178 mvCGvLY~~~s~~~~~~~I~yafDt~t~-~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRDTEIFYAFDTYTG-KEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred eEeeEEEEEEECCCCCcEEEEEEECCCC-ceeceeeeeccccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 0136677666542 233 23333322 223344555432 345689999999999999987766766654
No 112
>PTZ00421 coronin; Provisional
Probab=92.98 E-value=12 Score=38.27 Aligned_cols=207 Identities=7% Similarity=0.013 Sum_probs=109.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-------eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEE
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-------FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFID 242 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-------~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~ 242 (440)
......+++.+|.++.++.+-... +.|...++..... ...+...-.....+++.+..+.++.+-...+.|.
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASED--GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCC--CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence 345678999999655544443332 4677666643211 1111222234667888876655666555667787
Q ss_pred EEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCe-EEEEeccCCCCCCCCC
Q psy14258 243 RINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF-AIHIYHRQKQPDALKP 320 (440)
Q Consensus 243 ~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~-~~~v~~~~~qp~~~~~ 320 (440)
.-++..........+ ......++++..+ .+..+-..++.|...+..+++....+..-..+. ...++.+ .
T Consensus 152 IWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~--------~ 222 (493)
T PTZ00421 152 VWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK--------R 222 (493)
T ss_pred EEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC--------C
Confidence 777754333222222 1233567777644 566666667888888877776544332211111 1112211 1
Q ss_pred ceeEEee---cCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258 321 STFLLYA---KGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR 388 (440)
Q Consensus 321 ~~~l~~~---~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~ 388 (440)
...++.+ ....+.|...++... ...-....+..........||+.++.+|.+..+.+.|+..++...
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKM-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCC-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 1223221 112356777776543 111011111111122245688888888888777888988888753
No 113
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=92.89 E-value=0.087 Score=32.70 Aligned_cols=30 Identities=40% Similarity=0.775 Sum_probs=24.3
Q ss_pred ecccCCCCCCCCC--CcccCCCceEEc-cCCee
Q psy14258 13 DADECLIDGSCDQ--TCTNTHLSYTYT-DEGFS 42 (440)
Q Consensus 13 d~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~ 42 (440)
|+++|.....|.+ .|.+..++|.|. +.+|.
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4677875456877 899999999999 98886
No 114
>KOG0276|consensus
Probab=92.87 E-value=13 Score=38.23 Aligned_cols=98 Identities=10% Similarity=0.017 Sum_probs=62.3
Q ss_pred CcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCc
Q psy14258 145 HKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYP 219 (440)
Q Consensus 145 ~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P 219 (440)
.++.++ .+|.+++.+.......+...-+..+.|++.|..=++ .|.... -.|...+-++.-...-.-++ -.+.
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v-LtsSDD--m~iKlW~we~~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV-LTSSDD--MTIKLWDWENEWACEQTFEGHEHYV 143 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE-EecCCc--cEEEEeeccCceeeeeEEcCcceEE
Confidence 345555 689999998766666666566889999999964433 333232 47777777776655443333 3456
Q ss_pred eEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258 220 YGVTVDFPTKHVYWVDTYLDFIDRIN 245 (440)
Q Consensus 220 ~gl~vD~~~~~ly~~d~~~~~i~~~~ 245 (440)
..+++.|....-|.+-.-..+|..=+
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEE
Confidence 77888877766666554444443333
No 115
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.05 E-value=1.1 Score=43.05 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCEEEEEECCC------CeEEEEecCCCCeEEE-EECC-------------CCCeeeEEEecCCCcEEEE
Q psy14258 357 RPSVIDYHEKEEYIYYAELTS------YVIERRKMFGRGKEVV-IDTG-------------IYNVEGMAVDWMANNLYWT 416 (440)
Q Consensus 357 ~p~~l~~d~~~~~vy~~d~~~------~~I~r~~~~g~~~~~~-~~~~-------------~~~~~glAvD~~~~~lYwt 416 (440)
.+.+|++ +.++.+||++... ..|++++.+|...+.+ +... -.+.||||+.+.++.||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5668999 5678899999999 9999999998764443 2221 2468999999988878887
Q ss_pred e
Q psy14258 417 D 417 (440)
Q Consensus 417 d 417 (440)
-
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 3
No 116
>KOG4260|consensus
Probab=91.81 E-value=0.08 Score=47.71 Aligned_cols=39 Identities=33% Similarity=0.683 Sum_probs=31.4
Q ss_pred CCCceeecccCCCC-CCCC--CCcccCCCceEEc-cCCeeeec
Q psy14258 7 NKTQCVDADECLID-GSCD--QTCTNTHLSYTYT-DEGFSFQG 45 (440)
Q Consensus 7 ~~~~C~d~~~C~~~-~~Cs--~~C~n~~~~~~C~-~~g~~l~~ 45 (440)
|..-|+|+|||... ..|+ |+|.|+.|+|+|. .+||....
T Consensus 229 de~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~ 271 (350)
T KOG4260|consen 229 DEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGV 271 (350)
T ss_pred cccccccHHHHhcCCCCCChhheeecCCCceEecccccccCCh
Confidence 45679999999953 4443 5999999999999 99998744
No 117
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.32 E-value=0.84 Score=28.65 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=29.6
Q ss_pred cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEE
Q psy14258 270 ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI 308 (440)
Q Consensus 270 ~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v 308 (440)
+++||++++..+.|..++..+++....+.....|.++.+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 568999999999999999876666555554456777754
No 118
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=91.28 E-value=0.8 Score=47.01 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=47.8
Q ss_pred CCCCceEEEEEcCCCEEEEEECCC-------------------CeEEEEecCCC-------CeEEEEEC-----------
Q psy14258 354 DLKRPSVIDYHEKEEYIYYAELTS-------------------YVIERRKMFGR-------GKEVVIDT----------- 396 (440)
Q Consensus 354 ~~~~p~~l~~d~~~~~vy~~d~~~-------------------~~I~r~~~~g~-------~~~~~~~~----------- 396 (440)
.+.+|.++++++.++.||++-+.. +.|+|....+. .-+.++..
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 466899999999999999996443 38999998764 22333332
Q ss_pred ------CCCCeeeEEEecCCCcEEEEeCC
Q psy14258 397 ------GIYNVEGMAVDWMANNLYWTDAG 419 (440)
Q Consensus 397 ------~~~~~~glAvD~~~~~lYwtd~~ 419 (440)
.+.+|++|+||.. ++||+...+
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~eD~ 455 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQEDG 455 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEeCC
Confidence 3568999999984 568887544
No 119
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.27 E-value=17 Score=37.54 Aligned_cols=48 Identities=13% Similarity=-0.139 Sum_probs=28.9
Q ss_pred EEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe
Q psy14258 85 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP 150 (440)
Q Consensus 85 ~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~ 150 (440)
.+.||+..+.|||.-.+..- ..+.. + ....+..-.= |+|..++++-|.
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p-----~~~~~----------r---~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSP-----WNSHL----------R---PGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCC-----CCCCC----------C---CCCCccceeEEEEccccCCEEEe
Confidence 45899999999998765321 11111 0 0012222223 999999999998
No 120
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.17 E-value=17 Score=35.95 Aligned_cols=136 Identities=7% Similarity=0.018 Sum_probs=69.2
Q ss_pred eEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc
Q psy14258 267 TVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE 346 (440)
Q Consensus 267 ~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~ 346 (440)
.+.++.||+... .+.++.++..+|+..=.. ....+..+.+ .++.+|+... .+.++.++.... .
T Consensus 253 ~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~-~~~~~~~~~~-----------~~~~vy~~~~-~g~l~ald~~tG-~-- 315 (394)
T PRK11138 253 VVVGGVVYALAY-NGNLVALDLRSGQIVWKR-EYGSVNDFAV-----------DGGRIYLVDQ-NDRVYALDTRGG-V-- 315 (394)
T ss_pred EEECCEEEEEEc-CCeEEEEECCCCCEEEee-cCCCccCcEE-----------ECCEEEEEcC-CCeEEEEECCCC-c--
Confidence 356889999875 578999998888643111 1111111111 1356666654 377877776543 1
Q ss_pred eee-ee-ec--CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258 347 QAI-MP-IT--DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421 (440)
Q Consensus 347 ~~~-~~-~~--~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~ 421 (440)
... .+ .. ....|. + .+++||+.+. .+.|+.++.+... ....-..+-......++. +++||+.+. .+
T Consensus 316 ~~W~~~~~~~~~~~sp~---v--~~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~-~G 386 (394)
T PRK11138 316 ELWSQSDLLHRLLTAPV---L--YNGYLVVGDS-EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQAR-DG 386 (394)
T ss_pred EEEcccccCCCcccCCE---E--ECCEEEEEeC-CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeC-Cc
Confidence 111 00 00 111222 1 2578888874 5678888775322 111100111112223343 668998854 55
Q ss_pred eEEEEEe
Q psy14258 422 TINVAKI 428 (440)
Q Consensus 422 ~I~~~~~ 428 (440)
.|..+++
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 6766654
No 121
>KOG0318|consensus
Probab=91.06 E-value=18 Score=36.26 Aligned_cols=254 Identities=9% Similarity=0.062 Sum_probs=133.3
Q ss_pred ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE-ecCccCceEEEEeCCCC
Q psy14258 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPYGVTVDFPTK 229 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~-~~~~~~P~gl~vD~~~~ 229 (440)
+.|.-.+++-.....++........++++.|.+.+||=.+.. +.|..-+..-...-.+. ...-....+|+.+ ..+
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~ 375 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESG 375 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCccccccccccccceEEEEeec-CCC
Confidence 455555544333334445566788999999988888877766 46766655322222222 1123346678875 446
Q ss_pred EEEEEeCCCCcEEEEEccCCCcE--EEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCeE
Q psy14258 230 HVYWVDTYLDFIDRINYDGTDRK--TIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFA 305 (440)
Q Consensus 230 ~ly~~d~~~~~i~~~~~dG~~~~--~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~ 305 (440)
.||-+- ..+.+.++++.+.... .+.. .-.+|.|+++..+ .+.++-- .+ |..+.- .+....+.-...|..
T Consensus 376 ~~~t~g-~Dd~l~~~~~~~~~~t~~~~~~--lg~QP~~lav~~d~~~avv~~~-~~-iv~l~~--~~~~~~~~~~y~~s~ 448 (603)
T KOG0318|consen 376 ELFTIG-WDDTLRVISLKDNGYTKSEVVK--LGSQPKGLAVLSDGGTAVVACI-SD-IVLLQD--QTKVSSIPIGYESSA 448 (603)
T ss_pred cEEEEe-cCCeEEEEecccCcccccceee--cCCCceeEEEcCCCCEEEEEec-Cc-EEEEec--CCcceeeccccccce
Confidence 666554 4678888877443322 1111 1357999999876 4444432 22 222221 111111111113444
Q ss_pred EEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe
Q psy14258 306 IHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK 384 (440)
Q Consensus 306 ~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~ 384 (440)
+++. |+ .+..+. +..++++...+.+.... +....+.....++.|+|.|++.++-.+|. .+.+.-.+
T Consensus 449 vAv~----------~~~~~vaVG-G~Dgkvhvysl~g~~l~-ee~~~~~h~a~iT~vaySpd~~yla~~Da-~rkvv~yd 515 (603)
T KOG0318|consen 449 VAVS----------PDGSEVAVG-GQDGKVHVYSLSGDELK-EEAKLLEHRAAITDVAYSPDGAYLAAGDA-SRKVVLYD 515 (603)
T ss_pred EEEc----------CCCCEEEEe-cccceEEEEEecCCccc-ceeeeecccCCceEEEECCCCcEEEEecc-CCcEEEEE
Confidence 4443 23 333343 23477888888887332 33344455567889999998887777774 44454555
Q ss_pred cCCCCeEEEEEC--CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 385 MFGRGKEVVIDT--GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 385 ~~g~~~~~~~~~--~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
...... ....- .-..+..||--+.+. +.-|-+-...|.+.+++-
T Consensus 516 ~~s~~~-~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 516 VASREV-KTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKK 561 (603)
T ss_pred cccCce-ecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccC
Confidence 543211 11111 112345555443222 333334445677777665
No 122
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=90.92 E-value=19 Score=36.09 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=72.8
Q ss_pred eeeecCCcEEEe--------ceEEEEecCCceEEEEEcCC-C-CCceEEEEcCCCCeEEEEEcCCCC-CcEEEEeCCCCC
Q psy14258 139 RFPMVTHKIVYP--------EAIYFCTHYMEHCMIAIDLN-L-SKPRGIALDPTSGYMFFTKWGATR-PMLERSLLDGTE 207 (440)
Q Consensus 139 avD~~~~~lY~~--------~~I~~~~~dg~~~~~~~~~~-~-~~P~~iavd~~~g~lywtd~~~~~-~~I~r~~~dG~~ 207 (440)
.-.+.++.+|++ ..+...+.||.....+.... + ..|.- -|....+.+....... ++|+..+++...
T Consensus 153 ~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~w---s~~~~~~~y~~f~~~~~~~i~~~~l~~g~ 229 (425)
T COG0823 153 KGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAW---SPDGKKLAYVSFELGGCPRIYYLDLNTGK 229 (425)
T ss_pred cceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceecccc---CcCCCceEEEEEecCCCceEEEEeccCCc
Confidence 444556666655 46777788887766554321 1 11211 1222333333333322 579999999888
Q ss_pred ceeEEecCccCceEEEEeCCCCEEEEEeCCCC--cEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEE
Q psy14258 208 RFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD--FIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVT 276 (440)
Q Consensus 208 ~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~--~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~t 276 (440)
+..++.... .-...++-+.+.+|.++-...+ .|+.++++++....+.........-.+.-++.+|+++
T Consensus 230 ~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~ 299 (425)
T COG0823 230 RPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT 299 (425)
T ss_pred cceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE
Confidence 887776321 1123345556778877765544 7888888887755544322122222233445555544
No 123
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=90.86 E-value=2.7 Score=43.22 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=45.5
Q ss_pred ccccccce-eeeecCCcEEEe----c-------------------eEEEEecCCc-------eEEE-EEc----------
Q psy14258 131 RSLLDGTE-RFPMVTHKIVYP----E-------------------AIYFCTHYME-------HCMI-AID---------- 168 (440)
Q Consensus 131 ~~~~~p~~-avD~~~~~lY~~----~-------------------~I~~~~~dg~-------~~~~-~~~---------- 168 (440)
..+..|++ ++++.++.+|++ . +|.+...++. .-.. +..
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 45889999 999999999999 3 6788777654 2222 221
Q ss_pred ------CCCCCceEEEEcCCCCeEEEEEcCC
Q psy14258 169 ------LNLSKPRGIALDPTSGYMFFTKWGA 193 (440)
Q Consensus 169 ------~~~~~P~~iavd~~~g~lywtd~~~ 193 (440)
..+..|-.|++|+ .|.|++.+-..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~ 456 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDP-DGNLWIQEDGG 456 (524)
T ss_pred cCcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence 1367899999999 68888876544
No 124
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.49 E-value=19 Score=35.51 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=41.3
Q ss_pred CCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258 228 TKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 228 ~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~ 293 (440)
+++||++.. .+.+..++........-.. +..+..+++.++.||+.+. ++.++.++..+|+.
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~W~~~---~~~~~~~~~~~~~vy~~~~-~g~l~ald~~tG~~ 316 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIVWKRE---YGSVNDFAVDGGRIYLVDQ-NDRVYALDTRGGVE 316 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEEEeec---CCCccCcEEECCEEEEEcC-CCeEEEEECCCCcE
Confidence 678888764 4678888874333222111 3334456788999999875 68899999887754
No 125
>KOG0268|consensus
Probab=90.20 E-value=13 Score=35.55 Aligned_cols=234 Identities=9% Similarity=0.116 Sum_probs=111.3
Q ss_pred eEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCC-CE
Q psy14258 152 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT-KH 230 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~-~~ 230 (440)
.|..-++....+...+....+-.+||+++- +..++..|. -.|.+..++|....++...... +-||... +.
T Consensus 90 ~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdD----KtvK~wk~~~~p~~tilg~s~~----~gIdh~~~~~ 160 (433)
T KOG0268|consen 90 EVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDD----KTVKQWKIDGPPLHTILGKSVY----LGIDHHRKNS 160 (433)
T ss_pred eEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCC----cceeeeeccCCcceeeeccccc----cccccccccc
Confidence 344445555444433333445688999987 455555543 3677788888655555433211 1222211 22
Q ss_pred EEEEeCCCCcEEEEEccCCCcEEEec-CCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258 231 VYWVDTYLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH 307 (440)
Q Consensus 231 ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~ 307 (440)
+|-+ . ...|..-+..-.++..-++ + ......+.+. +-.|.-+-...++|...+...++...-+.-.-++.+|.
T Consensus 161 ~FaT-c-Ge~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Is 236 (433)
T KOG0268|consen 161 VFAT-C-GEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTIC 236 (433)
T ss_pred cccc-c-CceeeecccccCCccceeecC--CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccccee
Confidence 2211 1 1112222211111111000 1 1111122211 12344444445555555655555444221111233332
Q ss_pred EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258 308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG 387 (440)
Q Consensus 308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g 387 (440)
. +|+.|.|++-.....++..++-.-..+ ..+-.........+||.|- |+=|++-....+|+-+..+.
T Consensus 237 w----------nPeafnF~~a~ED~nlY~~DmR~l~~p--~~v~~dhvsAV~dVdfspt-G~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 237 W----------NPEAFNFVAANEDHNLYTYDMRNLSRP--LNVHKDHVSAVMDVDFSPT-GQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred c----------Cccccceeeccccccceehhhhhhccc--chhhcccceeEEEeccCCC-cchhccccccceEEEeecCC
Confidence 2 356677776665567766665433010 1111112223457888885 55778888899999999875
Q ss_pred C-CeEEEEECCCCCeeeEEEecCCC
Q psy14258 388 R-GKEVVIDTGIYNVEGMAVDWMAN 411 (440)
Q Consensus 388 ~-~~~~~~~~~~~~~~glAvD~~~~ 411 (440)
. .+++--...++.+.++..--.++
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred CcchhhhhHhhhheeeEEEEecccc
Confidence 4 45544445566777776654444
No 126
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.03 E-value=14 Score=33.17 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCCcEEEEeC-CCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCCCcEEEEE-ccCCCcEEEec-C-
Q psy14258 183 SGYMFFTKWGATRPMLERSLL-DGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN-YDGTDRKTIRK-G- 257 (440)
Q Consensus 183 ~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~~~~i~~-~- 257 (440)
.+++|.++.. +.|...+. +|...-..-. ..+..+ ..+ .++++|+... .+.+..++ .+|........ .
T Consensus 36 ~~~v~~~~~~---~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 36 GGRVYVASGD---GNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp TTEEEEEETT---SEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SS
T ss_pred CCEEEEEcCC---CEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc-eeeeEecccCCcceeeeeccccc
Confidence 5888888644 57888886 6643322221 122232 244 4889998873 34899998 46665555322 1
Q ss_pred C--ccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258 258 F--PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295 (440)
Q Consensus 258 ~--~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~ 295 (440)
. .+..+...++.++.+|.... ++.|+.++..+|+..-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 108 PPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLW 146 (238)
T ss_dssp CTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEE
T ss_pred cccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEE
Confidence 1 12345566777888988875 7889999988887754
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=90.01 E-value=15 Score=33.71 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=80.5
Q ss_pred ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE--EEecCC--ccCce--------eeeeEecC---EEEEEecCCCeE
Q psy14258 219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK--TIRKGF--PVQNL--------YDITVFEN---NLFVTSWRNQSI 283 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~--~i~~~~--~~~~p--------~gl~~~~~---~ly~td~~~~~i 283 (440)
-.|..+ -++-||+--..+..|.+.++...... .++.+. .-..| ..+|++|+ -||-|....+.|
T Consensus 76 GtG~VV--YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 76 GTGVVV--YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred cccEEE--ECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 345666 57899998888889999998776553 222210 11122 46888887 344454444444
Q ss_pred E--EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCC-----ceeEEeecC---CccEEE-EEEcCCCCCCceeeeee
Q psy14258 284 I--RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKP-----STFLLYAKG---KPAIIK-GLTFKRDGTTEQAIMPI 352 (440)
Q Consensus 284 ~--~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~-----~~~l~~~~~---~~~~I~-~i~~~~~~~~~~~~~~~ 352 (440)
. ++|..+-...++.. ..+|...+. -+.|+++++ ...+|. ..+..+. ......+|+
T Consensus 154 vvSkLnp~tL~ve~tW~-------------T~~~k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~-~~~~~~i~f 219 (255)
T smart00284 154 VISKLNPATLTIENTWI-------------TTYNKRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTG-KEGHLDIPF 219 (255)
T ss_pred EEEeeCcccceEEEEEE-------------cCCCcccccccEEEeeEEEEEccCCCCCcEEEEEEECCCC-ccceeeeee
Confidence 3 44433222222221 112211111 266777764 223442 3333333 222344555
Q ss_pred cCCC-CceEEEEEcCCCEEEEEECCCCeEEEEec
Q psy14258 353 TDLK-RPSVIDYHEKEEYIYYAELTSYVIERRKM 385 (440)
Q Consensus 353 ~~~~-~p~~l~~d~~~~~vy~~d~~~~~I~r~~~ 385 (440)
...- .-..|+|+|.+++||.=|.+-..+|.+.+
T Consensus 220 ~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y~v~f 253 (255)
T smart00284 220 ENMYEYISMLDYNPNDRKLYAWNNGHLVHYDIAL 253 (255)
T ss_pred ccccccceeceeCCCCCeEEEEeCCeEEEEEEEe
Confidence 5422 34479999999999999876655555543
No 128
>KOG0268|consensus
Probab=90.01 E-value=5.9 Score=37.76 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=105.4
Q ss_pred CcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec-CEEE
Q psy14258 196 PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-NNLF 274 (440)
Q Consensus 196 ~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-~~ly 274 (440)
+.|.-.+|.-..-...+....+...||.++ .+..++..|..+=+.+. ++|...++++.. ..-.||.-.. +.+|
T Consensus 89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~-~~~~~tvgdDKtvK~wk--~~~~p~~tilg~---s~~~gIdh~~~~~~F 162 (433)
T KOG0268|consen 89 GEVKIWNLSQRECIRTFKAHEGLVRGICVT-QTSFFTVGDDKTVKQWK--IDGPPLHTILGK---SVYLGIDHHRKNSVF 162 (433)
T ss_pred ceEEEEehhhhhhhheeecccCceeeEEec-ccceEEecCCcceeeee--ccCCcceeeecc---ccccccccccccccc
Confidence 456666664433333333334567899999 47788877765444444 455555555432 1223444322 2444
Q ss_pred EEecCCCeEEEEeccCCCceEEEe-cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec
Q psy14258 275 VTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT 353 (440)
Q Consensus 275 ~td~~~~~i~~~~~~~g~~~~~~~-~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~ 353 (440)
.|-...-.||-..+.+ +...+. +......+... | .+.+++.+....+.|...++-.. .+ ..-+.
T Consensus 163 aTcGe~i~IWD~~R~~--Pv~smswG~Dti~svkfN-----p----vETsILas~~sDrsIvLyD~R~~-~P---l~KVi 227 (433)
T KOG0268|consen 163 ATCGEQIDIWDEQRDN--PVSSMSWGADSISSVKFN-----P----VETSILASCASDRSIVLYDLRQA-SP---LKKVI 227 (433)
T ss_pred cccCceeeecccccCC--ccceeecCCCceeEEecC-----C----CcchheeeeccCCceEEEecccC-Cc---cceee
Confidence 4433222333222211 111000 00000111111 0 12333333333355555554333 11 11111
Q ss_pred CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 354 ~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
--.++.+|.++| +.+.|++-.....+|-.++.--.+.+-+. ...+.+-.+++.+.| .=+++-+-..+|.++..+.
T Consensus 228 ~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 228 LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCC
Confidence 123688999999 89999998899999999886422222111 222345556666544 3556666667888888776
No 129
>KOG1446|consensus
Probab=89.51 E-value=18 Score=33.79 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=101.2
Q ss_pred ccCceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc
Q psy14258 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 216 ~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~ 293 (440)
-..++.|.++..+..|.. -...+.+...+. +|...+++.......+-.-.+-... -+|-+...+..|.-.+..+.+-
T Consensus 14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 456788888855555554 455667777774 6777777765211101000011111 2333333344555555544433
Q ss_pred eEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEE
Q psy14258 294 YETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYY 372 (440)
Q Consensus 294 ~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~ 372 (440)
...+.+=. ....|.+. |.+-.+++.+....|+..++... .. ...+ .+..+...||||. |-++-
T Consensus 93 lRYF~GH~~~V~sL~~s----------P~~d~FlS~S~D~tvrLWDlR~~-~c-qg~l---~~~~~pi~AfDp~-GLifA 156 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVS----------PKDDTFLSSSLDKTVRLWDLRVK-KC-QGLL---NLSGRPIAAFDPE-GLIFA 156 (311)
T ss_pred EEEcCCCCceEEEEEec----------CCCCeEEecccCCeEEeeEecCC-CC-ceEE---ecCCCcceeECCC-CcEEE
Confidence 33332211 12223222 34445555555578888888754 21 1222 2334567899995 64666
Q ss_pred EECCCCeEEEEecCC---CCeEEEEE--CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEE-eCC
Q psy14258 373 AELTSYVIERRKMFG---RGKEVVID--TGIYNVEGMAVDWMANNLYWTDAGIGTINVAK-ISD 430 (440)
Q Consensus 373 ~d~~~~~I~r~~~~g---~~~~~~~~--~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~-~~g 430 (440)
+-..++.|.-.++.. ...+++.. .....-++|.+-..|+.|-.+.. .+.+.+++ .+|
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G 219 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDG 219 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCC
Confidence 666666787777653 23333322 22344567777777776666644 33344444 444
No 130
>KOG1274|consensus
Probab=87.72 E-value=44 Score=35.99 Aligned_cols=233 Identities=11% Similarity=-0.020 Sum_probs=120.0
Q ss_pred ccce-eeeecCCcEEEe---ceEEEE--ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc
Q psy14258 135 DGTE-RFPMVTHKIVYP---EAIYFC--THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER 208 (440)
Q Consensus 135 ~p~~-avD~~~~~lY~~---~~I~~~--~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~ 208 (440)
.-.. ++|+.+..||.+ +.|.+. .-+-...+++.. .-....+|+.+. . .|.+-... ..|.|+..+....
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s--~-~f~~~s~~--~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYS--N-HFLTGSEQ--NTVLRYKFPSGEE 88 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecc--c-ceEEeecc--ceEEEeeCCCCCc
Confidence 3556 888888877766 333332 222122222211 112345666654 2 33333332 5899999887766
Q ss_pred eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCce-eeeeEecC-EEEEEecCCCeEEEE
Q psy14258 209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL-YDITVFEN-NLFVTSWRNQSIIRV 286 (440)
Q Consensus 209 ~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p-~gl~~~~~-~ly~td~~~~~i~~~ 286 (440)
..++..--..-.-++++..+..+- +-...-.|..++.+.......+.+ ...| .+|.++.+ .+..+...+|.|...
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~ia-agsdD~~vK~~~~~D~s~~~~lrg--h~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIA-AGSDDTAVKLLNLDDSSQEKVLRG--HDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEE-eecCceeEEEEeccccchheeecc--cCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 656543211235678874444333 323334677777755555444443 3333 67888755 444445567888888
Q ss_pred eccCCCceEEEecCCCCeEEE----EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeec-C-C-CCce
Q psy14258 287 NKFNSDDYETIANFSRPFAIH----IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPIT-D-L-KRPS 359 (440)
Q Consensus 287 ~~~~g~~~~~~~~~~~p~~~~----v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~-~-~-~~p~ 359 (440)
+..++....++.+...-+++. .-.+..+|. ...+++++.. +.|..++.++- +....+. . . ..-.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk---~g~la~~~~d--~~Vkvy~r~~w----e~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK---GGTLAVPPVD--NTVKVYSRKGW----ELQFKLRDKLSSSKFS 236 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCC---CCeEEeeccC--CeEEEEccCCc----eeheeecccccccceE
Confidence 887666555554443322221 111222332 1245555544 77777776665 1111111 1 1 1245
Q ss_pred EEEEEcCCCEEEEE-ECCCCeEEEEecCC
Q psy14258 360 VIDYHEKEEYIYYA-ELTSYVIERRKMFG 387 (440)
Q Consensus 360 ~l~~d~~~~~vy~~-d~~~~~I~r~~~~g 387 (440)
.+.++|.+. |.| ....+.|..-+.+.
T Consensus 237 ~~~wsPnG~--YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 237 DLQWSPNGK--YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEcCCCc--EEeeeccCCcEEEEeccc
Confidence 677888644 444 34466676666663
No 131
>KOG2139|consensus
Probab=87.43 E-value=28 Score=33.42 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=99.5
Q ss_pred EEEEeCCCCEEEEEeCCCCcEEEEE-ccCCCcEEEecCCccCceeeeeEecC-EEEEE-ecCCCeEEEEeccCCCceEEE
Q psy14258 221 GVTVDFPTKHVYWVDTYLDFIDRIN-YDGTDRKTIRKGFPVQNLYDITVFEN-NLFVT-SWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 221 gl~vD~~~~~ly~~d~~~~~i~~~~-~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~t-d~~~~~i~~~~~~~g~~~~~~ 297 (440)
-|+|--..+-.+|++.......+.- .-++.+..+.++..-.....|...+| ....+ ...+..|..-+..+|....+.
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 4666667888999987654333321 12233333333211112234555554 22222 233444555555555444332
Q ss_pred -ecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEE-cCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258 298 -ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLT-FKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375 (440)
Q Consensus 298 -~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~-~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~ 375 (440)
.++....-++. .|++..+++.+- .+++++= .+.. -..+.....++ +..+--++|.+.+|.++-.
T Consensus 235 ~~glgg~slLkw----------SPdgd~lfaAt~-davfrlw~e~q~-wt~erw~lgsg--rvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 235 PKGLGGFSLLKW----------SPDGDVLFAATC-DAVFRLWQENQS-WTKERWILGSG--RVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccCCCceeeEEE----------cCCCCEEEEecc-cceeeeehhccc-ceecceeccCC--ceeeeeecCCCCEEEEEEc
Confidence 11111111111 245333333332 3444433 2222 22222232232 5566679999999999999
Q ss_pred CCCeEEEEecCCCC---------eEEEEECCC-------------CCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258 376 TSYVIERRKMFGRG---------KEVVIDTGI-------------YNVEGMAVDWMANNLYWTDAGIGTINVAK 427 (440)
Q Consensus 376 ~~~~I~r~~~~g~~---------~~~~~~~~~-------------~~~~glAvD~~~~~lYwtd~~~~~I~~~~ 427 (440)
+.-+||+...++.. .++.+.+++ +.+.-||-|+.+.+|-++=-+...|+.++
T Consensus 301 gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k 374 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCK 374 (445)
T ss_pred CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhh
Confidence 99999999988632 123332232 45788999998888877766666555443
No 132
>PTZ00420 coronin; Provisional
Probab=86.76 E-value=43 Score=34.90 Aligned_cols=209 Identities=9% Similarity=-0.002 Sum_probs=110.7
Q ss_pred CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCC--ce------eEEecCccCceEEEEeCCCCEEEEEeCCCCc
Q psy14258 169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--RF------PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF 240 (440)
Q Consensus 169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~--~~------~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~ 240 (440)
........++..|..+.++.+-... +.|...++.... .. ..+...-.....+++.+.+..++.+-...+.
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3445678999998756665554333 567766764211 11 1112222346778888777777666555677
Q ss_pred EEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE-EeccCCCCCCC
Q psy14258 241 IDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH-IYHRQKQPDAL 318 (440)
Q Consensus 241 i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~-v~~~~~qp~~~ 318 (440)
|..-++........... -.....+++..+ .++.+....+.|...+..+++....+..-....... +......
T Consensus 150 IrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs---- 223 (568)
T PTZ00420 150 VNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG---- 223 (568)
T ss_pred EEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc----
Confidence 87777754432221111 124567776543 555655556778888887765544332211111111 1110000
Q ss_pred CCc-eeEEeecCC---ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCC
Q psy14258 319 KPS-TFLLYAKGK---PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG 387 (440)
Q Consensus 319 ~~~-~~l~~~~~~---~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g 387 (440)
++ .+|+.+-.. .+.|...++...... -....+.....+.--.||+.++.+|++-.+.++|+-.++..
T Consensus 224 -~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p-l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 224 -GDDNYILSTGFSKNNMREMKLWDLKNTTSA-LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred -CCCCEEEEEEcCCCCccEEEEEECCCCCCc-eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 12 344432211 135777776643111 11122222112223467888899999988999999998864
No 133
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=86.09 E-value=17 Score=35.34 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=70.6
Q ss_pred eEEEEecCCceEEEEEcC----CCCCceEEEEc-C-CCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEe
Q psy14258 152 AIYFCTHYMEHCMIAIDL----NLSKPRGIALD-P-TSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVD 225 (440)
Q Consensus 152 ~I~~~~~dg~~~~~~~~~----~~~~P~~iavd-~-~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD 225 (440)
.+..|+.....++++... -+.....+..- + ..+.|++++.... .+|...+.+|...+.|......--.-+.+|
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~-~hly~~~~~~~~~~~lT~G~~~V~~i~~~d 289 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY-RHLYLYDLDGGKPRQLTSGDWEVTSILGWD 289 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS-EEEEEEETTSSEEEESS-SSS-EEEEEEEE
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC-cEEEEEcccccceeccccCceeecccceEc
Confidence 577888866555555442 23344455542 3 3455566664333 689999999987654443331111247889
Q ss_pred CCCCEEEEEeCC----CCcEEEEEcc-CCCcEEEecCCccCceeeeeEecC
Q psy14258 226 FPTKHVYWVDTY----LDFIDRINYD-GTDRKTIRKGFPVQNLYDITVFEN 271 (440)
Q Consensus 226 ~~~~~ly~~d~~----~~~i~~~~~d-G~~~~~i~~~~~~~~p~gl~~~~~ 271 (440)
..+++||+.-.. ...+++++++ ++.++.+.... ..+ +.+++..+
T Consensus 290 ~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-~~~-~~~~~Spd 338 (353)
T PF00930_consen 290 EDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-GDH-YSASFSPD 338 (353)
T ss_dssp CTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-STT-EEEEE-TT
T ss_pred CCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-CCc-eEEEECCC
Confidence 899999998765 3489999999 77776665532 223 45555544
No 134
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.85 E-value=36 Score=33.18 Aligned_cols=185 Identities=8% Similarity=0.007 Sum_probs=85.9
Q ss_pred CCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCc---cCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCC
Q psy14258 228 TKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFP---VQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRP 303 (440)
Q Consensus 228 ~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~---~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p 303 (440)
++++|+.. ..+.+..++. +|..+-....... +.......+.++.+|+.. ..+.+..++..+|+..-.. ....|
T Consensus 145 ~~~v~v~~-~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~-~~g~v~ald~~tG~~~W~~-~~~~~ 221 (377)
T TIGR03300 145 NGLVVVRT-NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGF-AGGKLVALDLQTGQPLWEQ-RVALP 221 (377)
T ss_pred CCEEEEEC-CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEEC-CCCEEEEEEccCCCEeeee-ccccC
Confidence 56777754 4567888876 4443332221100 001112244567777765 3678889998888643211 11111
Q ss_pred eE---EE-EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCe
Q psy14258 304 FA---IH-IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379 (440)
Q Consensus 304 ~~---~~-v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~ 379 (440)
.+ +. .......|.. .++.+|+... .+.++.+++... +...... .......+++ +++||+.+ ..+.
T Consensus 222 ~g~~~~~~~~~~~~~p~~--~~~~vy~~~~-~g~l~a~d~~tG----~~~W~~~-~~~~~~p~~~--~~~vyv~~-~~G~ 290 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVV--DGGQVYAVSY-QGRVAALDLRSG----RVLWKRD-ASSYQGPAVD--DNRLYVTD-ADGV 290 (377)
T ss_pred CCCCchhhhhccCCccEE--ECCEEEEEEc-CCEEEEEECCCC----cEEEeec-cCCccCceEe--CCEEEEEC-CCCe
Confidence 11 00 0000011111 1356666543 367887877533 1111111 1112223333 67899886 5678
Q ss_pred EEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 380 IERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 380 I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
|+.++..... .-..-..+-......++. +++||..+. .+.|..++.+
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i~--g~~l~~~~~-~G~l~~~d~~ 338 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAVV--GGYLVVGDF-EGYLHWLSRE 338 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEEE--CCEEEEEeC-CCEEEEEECC
Confidence 8888885321 111101010111222343 567777653 4567777654
No 135
>KOG0279|consensus
Probab=85.74 E-value=30 Score=32.04 Aligned_cols=240 Identities=8% Similarity=-0.008 Sum_probs=135.9
Q ss_pred eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258 82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC 156 (440)
Q Consensus 82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~ 156 (440)
++.+++.-.....+|.+-.....|....+...+.. + ..+.-.+...-+...+ ++-..++ ..++ +.++.-
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-~----G~~~r~~~GHsH~v~dv~~s~dg~-~alS~swD~~lrlW 90 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-Y----GVPVRRLTGHSHFVSDVVLSSDGN-FALSASWDGTLRLW 90 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccc-c----CceeeeeeccceEecceEEccCCc-eEEeccccceEEEE
Confidence 36666666665667777666666666665543211 0 0001112222334555 6655544 4444 456666
Q ss_pred ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC-ccCceEEEEeCCCCEEEEEe
Q psy14258 157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d 235 (440)
++.+...+..+...-....++++++.+..|- +-... ..|...+.-|.-..++.... -.|.+-+.+.|.+...|++.
T Consensus 91 Dl~~g~~t~~f~GH~~dVlsva~s~dn~qiv-SGSrD--kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 91 DLATGESTRRFVGHTKDVLSVAFSTDNRQIV-SGSRD--KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EecCCcEEEEEEecCCceEEEEecCCCceee-cCCCc--ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 8887544444444556788999999655543 33332 36777776666665565544 56888899998887777777
Q ss_pred CCCC-cEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCC
Q psy14258 236 TYLD-FIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQK 313 (440)
Q Consensus 236 ~~~~-~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~ 313 (440)
...+ .+..=++++-....-+.+. ......+++..| .+-.+-...+.++-.+...++....+........+.+. |.+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs-pnr 245 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS-PNR 245 (315)
T ss_pred ccCCceEEEEccCCcchhhccccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec-CCc
Confidence 6555 4555566665544433331 344566677655 66666556677777777767665544433333344333 222
Q ss_pred CCCCCCCceeEEeecCCccEEEEEEcCCC
Q psy14258 314 QPDALKPSTFLLYAKGKPAIIKGLTFKRD 342 (440)
Q Consensus 314 qp~~~~~~~~l~~~~~~~~~I~~i~~~~~ 342 (440)
-.|+.+.. ..|...+++..
T Consensus 246 --------ywL~~at~--~sIkIwdl~~~ 264 (315)
T KOG0279|consen 246 --------YWLCAATA--TSIKIWDLESK 264 (315)
T ss_pred --------eeEeeccC--CceEEEeccch
Confidence 23455544 55777777665
No 136
>KOG2110|consensus
Probab=85.61 E-value=35 Score=32.78 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=86.7
Q ss_pred ccce--eeeecCCcEEEe--ceEEEEecCCce-EEEEEcCCCCCceEE-EEcCCCC--eEEEEEcCCCCCcEEEEeCCCC
Q psy14258 135 DGTE--RFPMVTHKIVYP--EAIYFCTHYMEH-CMIAIDLNLSKPRGI-ALDPTSG--YMFFTKWGATRPMLERSLLDGT 206 (440)
Q Consensus 135 ~p~~--avD~~~~~lY~~--~~I~~~~~dg~~-~~~~~~~~~~~P~~i-avd~~~g--~lywtd~~~~~~~I~r~~~dG~ 206 (440)
-|.. +|--..+.|.++ ..|++.++..-. ..+|-. .-.+|.|+ |+.+.+. +|=+-+... .+.|..++..--
T Consensus 86 fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t-~~~n~~gl~AlS~n~~n~ylAyp~s~t-~GdV~l~d~~nl 163 (391)
T KOG2110|consen 86 FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIET-TPPNPKGLCALSPNNANCYLAYPGSTT-SGDVVLFDTINL 163 (391)
T ss_pred cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhc-cCCCccceEeeccCCCCceEEecCCCC-CceEEEEEcccc
Confidence 4555 666666667777 789999887543 333322 22466643 3444333 444333332 367888777654
Q ss_pred CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEE--ccCCCcEEEecCCccCceeeeeEecCEEEEEe-cCCCeE
Q psy14258 207 ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN--YDGTDRKTIRKGFPVQNLYDITVFENNLFVTS-WRNQSI 283 (440)
Q Consensus 207 ~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~--~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td-~~~~~i 283 (440)
.....+..--+.-..|+++ ..|.+.-+-+..++|.|+- .+|+....+..|...-..+.|++..+.-|.+- ..++.|
T Consensus 164 ~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred eeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 4444443323345679998 5566666666777777765 36766666666654445678888887444443 345555
Q ss_pred EEE
Q psy14258 284 IRV 286 (440)
Q Consensus 284 ~~~ 286 (440)
..+
T Consensus 243 HiF 245 (391)
T KOG2110|consen 243 HIF 245 (391)
T ss_pred EEE
Confidence 443
No 137
>KOG0291|consensus
Probab=85.42 E-value=53 Score=34.71 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=113.4
Q ss_pred CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCC
Q psy14258 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGT 249 (440)
Q Consensus 171 ~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~ 249 (440)
......+++.| .|.+..|-... ++|...+...+--..-+.+.-....++.+. ..++..++..-.+++..-|+ ...
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eD--gKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAED--GKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCC--CcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccc
Confidence 45667888888 57776665544 578887776554444444433445666665 45555555555566666554 344
Q ss_pred CcEEEecCCccCceeeeeEe--cCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeE-EEEeccCCCCCCCCCceeEEe
Q psy14258 250 DRKTIRKGFPVQNLYDITVF--ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFA-IHIYHRQKQPDALKPSTFLLY 326 (440)
Q Consensus 250 ~~~~i~~~~~~~~p~gl~~~--~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~-~~v~~~~~qp~~~~~~~~l~~ 326 (440)
+.+++.... -.+-.-++++ ++-+...+...=.|+.....+|+...++++-+.|-. +.+. |.+.+++
T Consensus 426 NfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~----------~~~~~La 494 (893)
T KOG0291|consen 426 NFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS----------PDGSLLA 494 (893)
T ss_pred eeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc----------cccCeEE
Confidence 444443321 1122456676 566666666666788888889998888887666643 4333 3444666
Q ss_pred ecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEEC
Q psy14258 327 AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375 (440)
Q Consensus 327 ~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~ 375 (440)
+-+-...|++.++=.. .++...+++ -+...+++|.|.++.|-++..
T Consensus 495 S~SWDkTVRiW~if~s-~~~vEtl~i--~sdvl~vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSS-SGTVETLEI--RSDVLAVSFRPDGKELAVATL 540 (893)
T ss_pred eccccceEEEEEeecc-CceeeeEee--ccceeEEEEcCCCCeEEEEEe
Confidence 6565677887776443 222222332 235678888888888888864
No 138
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.29 E-value=4.3 Score=39.09 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCEEEEEECCCCe------EEEEecCCC----CeEEEE------EC-C--C----CCeeeEEEecCCCc
Q psy14258 356 KRPSVIDYHEKEEYIYYAELTSYV------IERRKMFGR----GKEVVI------DT-G--I----YNVEGMAVDWMANN 412 (440)
Q Consensus 356 ~~p~~l~~d~~~~~vy~~d~~~~~------I~r~~~~g~----~~~~~~------~~-~--~----~~~~glAvD~~~~~ 412 (440)
..-+||+|++.++ .||+=+-.+. ++++.++.. ..-.+. .. | + -.+|||+++ -.+.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~-~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP-PDGS 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe-cCCC
Confidence 3457999997555 3454333344 787776641 110111 11 1 1 168899994 5788
Q ss_pred EEEEeCCC------CeEEEEEeCCC
Q psy14258 413 LYWTDAGI------GTINVAKISDF 431 (440)
Q Consensus 413 lYwtd~~~------~~I~~~~~~g~ 431 (440)
+||++-+. .+|.+++++|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~ 122 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGR 122 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCc
Confidence 99999999 99999999993
No 139
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=84.46 E-value=0.87 Score=27.60 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=22.2
Q ss_pred cccCCCCCCC--CCCcccCCCceEEc-cCCeee
Q psy14258 14 ADECLIDGSC--DQTCTNTHLSYTYT-DEGFSF 43 (440)
Q Consensus 14 ~~~C~~~~~C--s~~C~n~~~~~~C~-~~g~~l 43 (440)
+++|.....| .+.|.+..++|.|. ..+|..
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 4667653457 45799999999999 888864
No 140
>smart00181 EGF Epidermal growth factor-like domain.
Probab=84.44 E-value=0.87 Score=27.35 Aligned_cols=27 Identities=41% Similarity=0.775 Sum_probs=21.4
Q ss_pred CCCCCCCCC-CcccCCCceEEc-cCCeee
Q psy14258 17 CLIDGSCDQ-TCTNTHLSYTYT-DEGFSF 43 (440)
Q Consensus 17 C~~~~~Cs~-~C~n~~~~~~C~-~~g~~l 43 (440)
|..+..|.+ .|.+..++|.|. ..||.+
T Consensus 2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 2 CASGGPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCcCCCCCCEEECCCCCeEeECCCCCcc
Confidence 333356777 899999999999 999876
No 141
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=83.63 E-value=35 Score=31.21 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=47.2
Q ss_pred cCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC---CceEEEEEcCCCEEEEEEC
Q psy14258 299 NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK---RPSVIDYHEKEEYIYYAEL 375 (440)
Q Consensus 299 ~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~---~p~~l~~d~~~~~vy~~d~ 375 (440)
+.+.|+++..++..+- ..|.++...+.+.|....+-..+...-....+..+. +..|+..|.+.+.||++..
T Consensus 151 ~~s~~YGl~lyrs~kt------gd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 151 SSSSAYGLALYRSPKT------GDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE 224 (364)
T ss_pred CcccceeeEEEecCCc------CcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec
Confidence 4456899999874432 234444444457777666533212211111122222 3458999999999999973
Q ss_pred CCCeEEEEecC
Q psy14258 376 TSYVIERRKMF 386 (440)
Q Consensus 376 ~~~~I~r~~~~ 386 (440)
.-.|++...+
T Consensus 225 -dvaiWK~~Ae 234 (364)
T COG4247 225 -DVAIWKYEAE 234 (364)
T ss_pred -cceeeecccC
Confidence 5567777654
No 142
>KOG3914|consensus
Probab=81.28 E-value=44 Score=32.38 Aligned_cols=153 Identities=9% Similarity=-0.009 Sum_probs=97.6
Q ss_pred eeeecCCcEEEe---ceEEEEecCCceE--EEEEc-CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCC-CCCceeE
Q psy14258 139 RFPMVTHKIVYP---EAIYFCTHYMEHC--MIAID-LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD-GTERFPM 211 (440)
Q Consensus 139 avD~~~~~lY~~---~~I~~~~~dg~~~--~~~~~-~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~d-G~~~~~l 211 (440)
+.-..++.|+++ .+..+...+++.. +.+.. ..-..|.+|..+...-..-.+|...+...+...+.+ |..+..+
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 333445556666 4555666665543 11111 123678888888887788888866442334444434 5554433
Q ss_pred EecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccC
Q psy14258 212 VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFN 290 (440)
Q Consensus 212 ~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~ 290 (440)
. .+.--..+++.+..+.|.-+| ...+|+...+.+.+. +....|. -.....|++..+++.|+..+.+.|+.-+-.+
T Consensus 149 G--hvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 149 G--HVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDNYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred h--hhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhcccc-HhheeeeeeccCceeeecCCCCcEEEEeccc
Confidence 2 234455788887788888887 567898888887653 2222221 2346789999999999999999999888888
Q ss_pred CCceE
Q psy14258 291 SDDYE 295 (440)
Q Consensus 291 g~~~~ 295 (440)
|+...
T Consensus 225 gk~L~ 229 (390)
T KOG3914|consen 225 GKLLD 229 (390)
T ss_pred CCccc
Confidence 87754
No 143
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.02 E-value=62 Score=31.58 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCCCcEEEEeC-CCCCceeEEecC-ccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc-CCCcEEEecCC-
Q psy14258 183 SGYMFFTKWGATRPMLERSLL-DGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD-GTDRKTIRKGF- 258 (440)
Q Consensus 183 ~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d-G~~~~~i~~~~- 258 (440)
.|.||+.++. +.+...+. +|...-..-... ..+..+..+ ..+.+|+.. ..+.+..++.+ |..+-......
T Consensus 111 ~G~i~~g~~~---g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 111 DGKIYVGSWD---GKLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred CCeEEEeccc---ceEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc
Confidence 5888888877 36777777 565443322222 112223333 467777764 45678888876 55443322211
Q ss_pred -ccCceeeeeEecCEEEEEecC-CCeEEEEeccCCCce
Q psy14258 259 -PVQNLYDITVFENNLFVTSWR-NQSIIRVNKFNSDDY 294 (440)
Q Consensus 259 -~~~~p~gl~~~~~~ly~td~~-~~~i~~~~~~~g~~~ 294 (440)
.........+..+.+|+.... +..++.++..+|...
T Consensus 185 ~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred cccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence 122223333778889998653 447888888777553
No 144
>KOG1539|consensus
Probab=79.16 E-value=96 Score=33.26 Aligned_cols=191 Identities=9% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE---ecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV---THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY 246 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~---~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~ 246 (440)
......++++++...+.|.--.. +.|.+.+|.....+.-. ...-....|+++| ..+++.++-...+-+.--+.
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~---G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSK---GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDF 522 (910)
T ss_pred cCcceEEEEEeccCceEEEeccC---CeEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEec
Q ss_pred cCCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCcee
Q psy14258 247 DGTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTF 323 (440)
Q Consensus 247 dG~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~ 323 (440)
.+.....-.. +..+.-..++.. .++......-.|..+|..+-+-...+.+-. +.+++.+. |++-
T Consensus 523 ~~k~l~~~l~---l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS----------~Dgr 589 (910)
T KOG1539|consen 523 KKKVLKKSLR---LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS----------PDGR 589 (910)
T ss_pred CCcceeeeec---cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC----------CCCc
Q ss_pred EEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEE
Q psy14258 324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE 381 (440)
Q Consensus 324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~ 381 (440)
-+++....+.|+..++-.. ..+=.+.--..+..+.|.|.+++|--+....+-||
T Consensus 590 WlisasmD~tIr~wDlpt~----~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTG----TLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIY 643 (910)
T ss_pred EEEEeecCCcEEEEeccCc----ceeeeEecCCcceeeEECCCCCEEEEEEecCceEE
No 145
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=78.29 E-value=72 Score=31.32 Aligned_cols=149 Identities=17% Similarity=0.104 Sum_probs=74.1
Q ss_pred eeeecCCcEEEe------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEE
Q psy14258 139 RFPMVTHKIVYP------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212 (440)
Q Consensus 139 avD~~~~~lY~~------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~ 212 (440)
++...+++|.++ ..++..+++....+.|....-...-|..+.|....+||...+ .++.+.+++....+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~---~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG---RSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT---TEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC---CeEEEEECCcCcEEEEE
Confidence 555566666665 468888999888777766443334466677888898876544 48999999987776666
Q ss_pred ecCccC-ceEEE-EeCCCCEEEEEeC----------------------CCCcEEEEEccCCCcEEEec-CCccCceeeee
Q psy14258 213 THKIVY-PYGVT-VDFPTKHVYWVDT----------------------YLDFIDRINYDGTDRKTIRK-GFPVQNLYDIT 267 (440)
Q Consensus 213 ~~~~~~-P~gl~-vD~~~~~ly~~d~----------------------~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~ 267 (440)
..+-.+ ..|-. ++ ..+++++... -..+|.++++.++.++++.. ..-+.|+.-=-
T Consensus 119 ~~p~~~~g~gt~v~n-~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 119 EVPDDWKGYGTWVAN-SDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp E--TTEEEEEEEEE--TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred ECCcccccccceeeC-CCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 543222 22333 23 3344443211 11278999998888888876 32234543222
Q ss_pred EecCEEEEE---ecC--CCeEEEEeccCC
Q psy14258 268 VFENNLFVT---SWR--NQSIIRVNKFNS 291 (440)
Q Consensus 268 ~~~~~ly~t---d~~--~~~i~~~~~~~g 291 (440)
.+...|-+. .|. ..+|+.++..++
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 222322222 232 247777776443
No 146
>PLN00181 protein SPA1-RELATED; Provisional
Probab=77.56 E-value=1.2e+02 Score=33.30 Aligned_cols=199 Identities=5% Similarity=-0.125 Sum_probs=99.8
Q ss_pred eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccceeeeec--CCcEEEe----ceEEE
Q psy14258 82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV--THKIVYP----EAIYF 155 (440)
Q Consensus 82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~avD~~--~~~lY~~----~~I~~ 155 (440)
.+.+++|++.++. +.+-...+.|+..++........ ....+...+ ..-.... ++.|. .+....+ +.|.+
T Consensus 485 ~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~-~~~~~v~-~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 485 LVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR--DIHYPVVEL-ASRSKLS-GICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred cEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc--ccccceEEe-cccCcee-eEEeccCCCCEEEEEeCCCeEEE
Confidence 3889999987554 44444556666554432100000 000011111 1111222 44443 3334334 67888
Q ss_pred EecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 156 ~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d 235 (440)
-++........+........+++++|..+.++++-... +.|...++........+.. ......+.+.+..+.++.+-
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D--g~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD--GSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC--CEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEE
Confidence 78775544333333445678999998777777766443 5777777764332222221 12344555544455555555
Q ss_pred CCCCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEecc
Q psy14258 236 TYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289 (440)
Q Consensus 236 ~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~ 289 (440)
...+.|...++..... .....+. ......+.+..+..+++-...+.|...+..
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 5677888887754321 1111111 122345555544445555556666655543
No 147
>KOG4441|consensus
Probab=76.66 E-value=1e+02 Score=32.26 Aligned_cols=145 Identities=10% Similarity=0.105 Sum_probs=88.6
Q ss_pred ccccccce--eeeecCCcEEEe---------ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCC----C
Q psy14258 131 RSLLDGTE--RFPMVTHKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT----R 195 (440)
Q Consensus 131 ~~~~~p~~--avD~~~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~----~ 195 (440)
+.+..++. ++-..++.||.. ..|++.+.....-+.+.. -...-.+.++-..+|+||..-.... -
T Consensus 365 a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 365 APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 45666666 888899999998 468998888766554432 1223335555557899999864222 1
Q ss_pred CcEEEEeCCCCCceeEEe-cCccCceEEEEeCCCCEEEEEeCCC-----CcEEEEEccCCCcEEEecCCccCceeeeeEe
Q psy14258 196 PMLERSLLDGTERFPMVT-HKIVYPYGVTVDFPTKHVYWVDTYL-----DFIDRINYDGTDRKTIRKGFPVQNLYDITVF 269 (440)
Q Consensus 196 ~~I~r~~~dG~~~~~l~~-~~~~~P~gl~vD~~~~~ly~~d~~~-----~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~ 269 (440)
..+++.++....=+.+-. ..-..-.|+++ .+++||.+=... .++++.+.....-+.+..-..-+...|+++.
T Consensus 444 ~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 444 NSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL 521 (571)
T ss_pred ceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE
Confidence 467777776433222211 01122345555 699999875422 2577777766555555321112345688999
Q ss_pred cCEEEEEec
Q psy14258 270 ENNLFVTSW 278 (440)
Q Consensus 270 ~~~ly~td~ 278 (440)
++.+|..-.
T Consensus 522 ~~~ly~vGG 530 (571)
T KOG4441|consen 522 GGKLYAVGG 530 (571)
T ss_pred CCEEEEEec
Confidence 999998754
No 148
>KOG4649|consensus
Probab=76.48 E-value=63 Score=29.77 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=71.5
Q ss_pred ccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258 135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF 209 (440)
Q Consensus 135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~ 209 (440)
+-.- |+|+.++++||- .||+-. .. ++ .+ -+++--.+|.||+-+.... ..++..-.-++...
T Consensus 32 s~~~~avd~~sG~~~We~ilg~RiE~s-----a~--vv-gd-----fVV~GCy~g~lYfl~~~tG-s~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGVRIECS-----AI--VV-GD-----FVVLGCYSGGLYFLCVKTG-SQIWNFVILETVKV 97 (354)
T ss_pred CceEEEecCCCCcEEeehhhCceeeee-----eE--EE-CC-----EEEEEEccCcEEEEEecch-hheeeeeehhhhcc
Confidence 3344 999999999997 566532 21 11 12 2666677899999997763 46665544332211
Q ss_pred eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec----CCccCceeeeeEecCEEEEEecCCCeEEE
Q psy14258 210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK----GFPVQNLYDITVFENNLFVTSWRNQSIIR 285 (440)
Q Consensus 210 ~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~----~~~~~~p~gl~~~~~~ly~td~~~~~i~~ 285 (440)
.-..|+.++.+|. -.+.+..+.+|+.... -+.+ +..+..|. |+.-...||++-. .+.|.+
T Consensus 98 -----------~a~~d~~~glIyc-gshd~~~yalD~~~~~--cVykskcgG~~f~sP~-i~~g~~sly~a~t-~G~vla 161 (354)
T KOG4649|consen 98 -----------RAQCDFDGGLIYC-GSHDGNFYALDPKTYG--CVYKSKCGGGTFVSPV-IAPGDGSLYAAIT-AGAVLA 161 (354)
T ss_pred -----------ceEEcCCCceEEE-ecCCCcEEEecccccc--eEEecccCCceeccce-ecCCCceEEEEec-cceEEE
Confidence 1234544544443 3445555555543211 1111 11122221 2222348998874 678888
Q ss_pred EeccCCCceEE
Q psy14258 286 VNKFNSDDYET 296 (440)
Q Consensus 286 ~~~~~g~~~~~ 296 (440)
+++..+...++
T Consensus 162 vt~~~~~~~~~ 172 (354)
T KOG4649|consen 162 VTKNPYSSTEF 172 (354)
T ss_pred EccCCCCccee
Confidence 88876654443
No 149
>KOG0292|consensus
Probab=75.96 E-value=1.2e+02 Score=32.89 Aligned_cols=273 Identities=12% Similarity=0.067 Sum_probs=131.0
Q ss_pred ceeEEEEee-cccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccc
Q psy14258 46 VKTHLYETI-EAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGA 124 (440)
Q Consensus 46 ~~~ll~s~~-~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~ 124 (440)
.|.+|-++. +. |+..+-......-.+..++-.+..-.|++.+. +.++-+-..+|+.-++.|-..... .
T Consensus 105 yPWIlSASDDQT-----IrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~-----~ 173 (1202)
T KOG0292|consen 105 YPWILSASDDQT-----IRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNK-----A 173 (1202)
T ss_pred CceEEEccCCCe-----EEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCC-----C
Confidence 566665554 44 66655554443322222232377778888654 555555557777767665432211 0
Q ss_pred ccceeeccccccceeeeecCCcEEEe-ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC
Q psy14258 125 TRPMLERSLLDGTERFPMVTHKIVYP-EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL 203 (440)
Q Consensus 125 ~~v~~~~~~~~p~~avD~~~~~lY~~-~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~ 203 (440)
+. -+. ..+.+ -..+.-||=. +-|...-++|.. .-..-+|+.|. --|+++-....+-+++|++-
T Consensus 174 pg-~~e---~~~~~--~~~~~dLfg~~DaVVK~VLEGHD---------RGVNwaAfhpT-lpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 174 PG-SLE---DQMRG--QQGNSDLFGQTDAVVKHVLEGHD---------RGVNWAAFHPT-LPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred CC-Cch---hhhhc--cccchhhcCCcCeeeeeeecccc---------cccceEEecCC-cceEEecCCcceeeEEEecc
Confidence 10 000 11111 1111113311 333333344433 23446677773 45777765543345666554
Q ss_pred CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC-CcEEEecCCccCceeeeeEecC-EEEEEecCCC
Q psy14258 204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT-DRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQ 281 (440)
Q Consensus 204 dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~ 281 (440)
.-.........-.....++-++ ..+.|..+......|..-+++-. .+++.... ...-.-++.+.. +||-+-..++
T Consensus 238 tKaWEvDtcrgH~nnVssvlfh-p~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFH-PHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred ccceeehhhhcccCCcceEEec-CccceeEecCCCccEEEEecccccceeeeecc--CCeEEEEEecCCcceeeeecCCc
Confidence 3222211122234456678887 55677778777778877776542 22332221 112222333322 3443332222
Q ss_pred e-EEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCC----C
Q psy14258 282 S-IIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDL----K 356 (440)
Q Consensus 282 ~-i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~----~ 356 (440)
. |++..+ ++| ...+. .+-|+|... ..|+..++....+. ...++... .
T Consensus 315 m~VFkleR------------Erp-a~~v~-----------~n~LfYvkd--~~i~~~d~~t~~d~--~v~~lr~~g~~~~ 366 (1202)
T KOG0292|consen 315 MIVFKLER------------ERP-AYAVN-----------GNGLFYVKD--RFIRSYDLRTQKDT--AVASLRRPGTLWQ 366 (1202)
T ss_pred eEEEEEcc------------cCc-eEEEc-----------CCEEEEEcc--ceEEeeeccccccc--eeEeccCCCcccC
Confidence 1 111111 111 11111 345666655 78888888765111 12222222 3
Q ss_pred CceEEEEEcCCCEEEEEECC
Q psy14258 357 RPSVIDYHEKEEYIYYAELT 376 (440)
Q Consensus 357 ~p~~l~~d~~~~~vy~~d~~ 376 (440)
.|+.+.|+|.++.+.++...
T Consensus 367 ~~~smsYNpae~~vlics~~ 386 (1202)
T KOG0292|consen 367 PPRSLSYNPAENAVLICSNL 386 (1202)
T ss_pred CcceeeeccccCeEEEEecc
Confidence 56789999999999999433
No 150
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=74.00 E-value=96 Score=30.67 Aligned_cols=278 Identities=11% Similarity=0.083 Sum_probs=139.6
Q ss_pred eecCCcEEEe--------ceEEEEecC---CceEEEEEcC-CCC------CceEEEEcCCCCeEEEE-EcC-CCCCcEEE
Q psy14258 141 PMVTHKIVYP--------EAIYFCTHY---MEHCMIAIDL-NLS------KPRGIALDPTSGYMFFT-KWG-ATRPMLER 200 (440)
Q Consensus 141 D~~~~~lY~~--------~~I~~~~~d---g~~~~~~~~~-~~~------~P~~iavd~~~g~lywt-d~~-~~~~~I~r 200 (440)
-..++..|+. ..+.|.... |..-++++.. .+. ...++++.|.+.+|-++ +.+ +....|..
T Consensus 75 ~~~g~~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v 154 (414)
T PF02897_consen 75 VRRGGYYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRV 154 (414)
T ss_dssp EEETTEEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEE
T ss_pred EEECCeEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEE
Confidence 3466778877 346666665 4443666652 221 12357888877777666 333 22346777
Q ss_pred EeCCCCCceeEEecCccCc--eEEEEeCCCCEEEEEeCCC----------CcEEEEEccCCCc--EEEecCCccCc-eee
Q psy14258 201 SLLDGTERFPMVTHKIVYP--YGVTVDFPTKHVYWVDTYL----------DFIDRINYDGTDR--KTIRKGFPVQN-LYD 265 (440)
Q Consensus 201 ~~~dG~~~~~l~~~~~~~P--~gl~vD~~~~~ly~~d~~~----------~~i~~~~~dG~~~--~~i~~~~~~~~-p~g 265 (440)
.+++.. .++...+..+ .+++.-..+..+|++.... ..|++..+..... ..|.++..-.. -.+
T Consensus 155 ~Dl~tg---~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~ 231 (414)
T PF02897_consen 155 FDLETG---KFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVS 231 (414)
T ss_dssp EETTTT---EEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEE
T ss_pred EECCCC---cCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEE
Confidence 888654 2333333333 2377776667888776433 2355555543322 35555321122 234
Q ss_pred eeEec--CEEEEEecC--C-CeEEEEeccCC----CceEEE-ecCCCCeEEEEeccCCCCCCCCCceeEEeecCC--ccE
Q psy14258 266 ITVFE--NNLFVTSWR--N-QSIIRVNKFNS----DDYETI-ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK--PAI 333 (440)
Q Consensus 266 l~~~~--~~ly~td~~--~-~~i~~~~~~~g----~~~~~~-~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~--~~~ 333 (440)
+.... .+|++.... + ..++.++...+ .....+ ......... +.| ..+.+++.++.. +++
T Consensus 232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~-v~~--------~~~~~yi~Tn~~a~~~~ 302 (414)
T PF02897_consen 232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY-VDH--------HGDRLYILTNDDAPNGR 302 (414)
T ss_dssp EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE-EEE--------ETTEEEEEE-TT-TT-E
T ss_pred EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE-EEc--------cCCEEEEeeCCCCCCcE
Confidence 44443 366654432 2 45666666543 122222 222211111 111 013455566543 578
Q ss_pred EEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE--CCCCeEEEEecC-CCCeEEEEECCCCCeeeEEEecCC
Q psy14258 334 IKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE--LTSYVIERRKMF-GRGKEVVIDTGIYNVEGMAVDWMA 410 (440)
Q Consensus 334 I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d--~~~~~I~r~~~~-g~~~~~~~~~~~~~~~glAvD~~~ 410 (440)
|.+++++.........+.+..-....--.++..+++|++.. .+...|...+++ +.....+.....+.+.++.-++.+
T Consensus 303 l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~ 382 (414)
T PF02897_consen 303 LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDS 382 (414)
T ss_dssp EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-
T ss_pred EEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCC
Confidence 88888887722111112222222222233445577888875 445678888998 543333333455556788888888
Q ss_pred CcEEEEeCCC---CeEEEEEeCC
Q psy14258 411 NNLYWTDAGI---GTINVAKISD 430 (440)
Q Consensus 411 ~~lYwtd~~~---~~I~~~~~~g 430 (440)
..++++-++. .+|..+++..
T Consensus 383 ~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 383 DELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp SEEEEEEEETTEEEEEEEEETTT
T ss_pred CEEEEEEeCCCCCCEEEEEECCC
Confidence 8888875432 5677777765
No 151
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=73.40 E-value=3.7 Score=25.48 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCeeeEEEecCCCcEEEEeCC
Q psy14258 399 YNVEGMAVDWMANNLYWTDAG 419 (440)
Q Consensus 399 ~~~~glAvD~~~~~lYwtd~~ 419 (440)
..+.+||+|. .+|+|++-..
T Consensus 13 ~~~~~IavD~-~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVDS-NGNIYVTGYT 32 (38)
T ss_pred eeEEEEEECC-CCCEEEEEee
Confidence 4589999995 7789999543
No 152
>KOG0315|consensus
Probab=72.87 E-value=76 Score=29.02 Aligned_cols=183 Identities=8% Similarity=-0.119 Sum_probs=109.1
Q ss_pred ceeEEEEeecccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccc
Q psy14258 46 VKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGAT 125 (440)
Q Consensus 46 ~~~ll~s~~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~ 125 (440)
.|.+|++.+-. -+|+.-........-.++...+.+-++.+.+..+.| +-....+|+..+++..+.+.
T Consensus 9 ~~viLvsA~YD---hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~L--Aaa~~qhvRlyD~~S~np~P-------- 75 (311)
T KOG0315|consen 9 DPVILVSAGYD---HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDL--AAAGNQHVRLYDLNSNNPNP-------- 75 (311)
T ss_pred CceEEEeccCc---ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchh--hhccCCeeEEEEccCCCCCc--------
Confidence 45677766432 126655544433333444333337778887765433 34444667777776554332
Q ss_pred cceeeccccccce-eeeecCCcEEEe---ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEE
Q psy14258 126 RPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 201 (440)
Q Consensus 126 ~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~ 201 (440)
...+...-.+... .|--.++.+|=. +.+.+-++....+..+.... .....+++.|..+.|+..|.. +.|..-
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqs---g~irvW 151 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQS---GNIRVW 151 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCC---CcEEEE
Confidence 2223333456677 777777766644 56666666654444443322 556789999999999999977 578888
Q ss_pred eCCCC-CceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEc
Q psy14258 202 LLDGT-ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINY 246 (440)
Q Consensus 202 ~~dG~-~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~ 246 (440)
++--. -...++.+.......|++++.+.+|--++.+ +..+.-++
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-G~cyvW~l 196 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-GNCYVWRL 196 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-ccEEEEEc
Confidence 87543 2334555555566789999887777666543 44444443
No 153
>KOG0279|consensus
Probab=71.58 E-value=87 Score=29.11 Aligned_cols=194 Identities=8% Similarity=-0.098 Sum_probs=118.5
Q ss_pred eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEEe
Q psy14258 82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFCT 157 (440)
Q Consensus 82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~~ 157 (440)
++..++....++ ..++-.-.+.++.-++.++.. ...+...-...-+ |++..+++|.=. ..|..-+
T Consensus 65 ~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~----------t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 65 FVSDVVLSSDGN-FALSASWDGTLRLWDLATGES----------TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred EecceEEccCCc-eEEeccccceEEEEEecCCcE----------EEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 477777776644 445555555565556654321 1224455556777 888888765433 5677777
Q ss_pred cCCceEEEEEcCC-CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258 158 HYMEHCMIAIDLN-LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDT 236 (440)
Q Consensus 158 ~dg~~~~~~~~~~-~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~ 236 (440)
.-|.-.-++.... -+....+.+.|.+...++...+.+ ..+..-++++-..+.-....-++.+.+++.+. +.|.-.-.
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D-ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD-GslcasGg 211 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWD-KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD-GSLCASGG 211 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC-ceEEEEccCCcchhhccccccccEEEEEECCC-CCEEecCC
Confidence 7776655555544 577889999997656666665554 57777788776555444444567788999854 45555555
Q ss_pred CCCcEEEEEccC-CCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCC
Q psy14258 237 YLDFIDRINYDG-TDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNS 291 (440)
Q Consensus 237 ~~~~i~~~~~dG-~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g 291 (440)
+.+.++.-+++- .+...+.. ....+++++..++.+..-.....|...+..++
T Consensus 212 kdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATATSIKIWDLESK 264 (315)
T ss_pred CCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccCCceEEEeccch
Confidence 667888888764 34333221 44567777776655554444445555555444
No 154
>KOG1446|consensus
Probab=70.88 E-value=94 Score=29.23 Aligned_cols=175 Identities=9% Similarity=0.098 Sum_probs=104.0
Q ss_pred ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCE
Q psy14258 151 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ 230 (440)
..|.-.++.......-..+.-....+|.+.|. +-.|.+.... ..|...++.-.+-+.++. +..+.-.|+| .+|.
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-~d~FlS~S~D--~tvrLWDlR~~~cqg~l~--~~~~pi~AfD-p~GL 153 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-DDTFLSSSLD--KTVRLWDLRVKKCQGLLN--LSGRPIAAFD-PEGL 153 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCC-CCeEEecccC--CeEEeeEecCCCCceEEe--cCCCcceeEC-CCCc
Confidence 46766676655544444455567889999996 4788887665 377777877555555543 3344567899 5566
Q ss_pred EEEEeCCCCcEEEEEcc----CCCcEEEecCCccCceeeeeEecC--EEEEEecCCCeEEEEeccCCCceEEEecCCCCe
Q psy14258 231 VYWVDTYLDFIDRINYD----GTDRKTIRKGFPVQNLYDITVFEN--NLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF 304 (440)
Q Consensus 231 ly~~d~~~~~i~~~~~d----G~~~~~i~~~~~~~~p~gl~~~~~--~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~ 304 (440)
++-+-.+.+.|...|+. |...+..........-..|.+..+ .|.++.. .+.++.++.++|.....+.......
T Consensus 154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCC
Confidence 66666666688888753 233332222112344567777654 7777663 6778888999887555444322222
Q ss_pred ---EEEEeccCCCCCCCCCc-eeEEeecCCccEEEEEEcCCC
Q psy14258 305 ---AIHIYHRQKQPDALKPS-TFLLYAKGKPAIIKGLTFKRD 342 (440)
Q Consensus 305 ---~~~v~~~~~qp~~~~~~-~~l~~~~~~~~~I~~i~~~~~ 342 (440)
.-+.+. |+ .|++.... .++|....+...
T Consensus 233 ~~~~~a~ft---------Pds~Fvl~gs~-dg~i~vw~~~tg 264 (311)
T KOG1446|consen 233 NLPLSATFT---------PDSKFVLSGSD-DGTIHVWNLETG 264 (311)
T ss_pred CcceeEEEC---------CCCcEEEEecC-CCcEEEEEcCCC
Confidence 223342 44 45554433 477777766433
No 155
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=70.88 E-value=19 Score=36.79 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=45.6
Q ss_pred CCCceEEEEEcCCCEEEEEECCC----------------CeEEEEecCCC-------CeEEEEECC--------------
Q psy14258 355 LKRPSVIDYHEKEEYIYYAELTS----------------YVIERRKMFGR-------GKEVVIDTG-------------- 397 (440)
Q Consensus 355 ~~~p~~l~~d~~~~~vy~~d~~~----------------~~I~r~~~~g~-------~~~~~~~~~-------------- 397 (440)
..+|..|++.+..+.||++.+.. +.|+|....+. .-++++..+
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 34899999999999999996433 47888877542 123444321
Q ss_pred ---CCCeeeEEEecCCCcEEEEeCCCC
Q psy14258 398 ---IYNVEGMAVDWMANNLYWTDAGIG 421 (440)
Q Consensus 398 ---~~~~~glAvD~~~~~lYwtd~~~~ 421 (440)
+..|++|+||..+ +|++...+++
T Consensus 496 ~~~f~~PDnl~fD~~G-rLWi~TDg~~ 521 (616)
T COG3211 496 ANWFNSPDNLAFDPWG-RLWIQTDGSG 521 (616)
T ss_pred cccccCCCceEECCCC-CEEEEecCCC
Confidence 3459999999855 5877755443
No 156
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=69.68 E-value=4.2 Score=23.94 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=18.3
Q ss_pred CCCC--CCcccCCCceEEc-cCCeee
Q psy14258 21 GSCD--QTCTNTHLSYTYT-DEGFSF 43 (440)
Q Consensus 21 ~~Cs--~~C~n~~~~~~C~-~~g~~l 43 (440)
..|. ..|.+.+++|.|. +.||..
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4565 5788888999999 998865
No 157
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=69.08 E-value=1.5e+02 Score=30.74 Aligned_cols=30 Identities=3% Similarity=0.293 Sum_probs=24.7
Q ss_pred eeeeEecCEEEEEecCCCeEEEEeccCCCce
Q psy14258 264 YDITVFENNLFVTSWRNQSIIRVNKFNSDDY 294 (440)
Q Consensus 264 ~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~ 294 (440)
.++++.++.||+... .+.++.+|..+|+..
T Consensus 114 rg~av~~~~v~v~t~-dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 114 RGVALYDGKVFFGTL-DARLVALDAKTGKVV 143 (527)
T ss_pred ccceEECCEEEEEcC-CCEEEEEECCCCCEE
Confidence 567888999999875 678999999888765
No 158
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=68.79 E-value=23 Score=35.19 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=35.7
Q ss_pred CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec----C---------------ccCceEEEEeCCCCEEEE
Q psy14258 173 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH----K---------------IVYPYGVTVDFPTKHVYW 233 (440)
Q Consensus 173 ~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~----~---------------~~~P~gl~vD~~~~~ly~ 233 (440)
-|..|.+....++||++.|.. +.|...+..-...-.++.. + .+-|+-+.+...+.||||
T Consensus 313 LitDI~iSlDDrfLYvs~W~~--GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLH--GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETTT--TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEcccC--CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 367888888889999999997 6888888876554444431 0 124778888888999999
Q ss_pred EeC
Q psy14258 234 VDT 236 (440)
Q Consensus 234 ~d~ 236 (440)
+.+
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 975
No 159
>PRK13616 lipoprotein LpqB; Provisional
Probab=67.69 E-value=1.7e+02 Score=30.85 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=60.0
Q ss_pred CceEEEEcCCCCeEEEEEcCCCCCcEEE---EeCCCCCceeE-----EecCccC-ceEEEEeCCCCEEEEEeCC-CCcEE
Q psy14258 173 KPRGIALDPTSGYMFFTKWGATRPMLER---SLLDGTERFPM-----VTHKIVY-PYGVTVDFPTKHVYWVDTY-LDFID 242 (440)
Q Consensus 173 ~P~~iavd~~~g~lywtd~~~~~~~I~r---~~~dG~~~~~l-----~~~~~~~-P~gl~vD~~~~~ly~~d~~-~~~i~ 242 (440)
.+..+.+-|...+|.+.-. ++|+. ...++.. ..+ +...+.. +..+..- .++.|++.... ...++
T Consensus 449 ~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWR-TGDSLVVGRSDPEHPVW 522 (591)
T ss_pred CcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEe-cCCEEEEEecCCCCceE
Confidence 5888888887667777652 36666 3333332 233 2222222 3445543 44556665433 34689
Q ss_pred EEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEe
Q psy14258 243 RINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287 (440)
Q Consensus 243 ~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~ 287 (440)
.+++||...+.+..++.......|+-..+.||.+|. +.+....
T Consensus 523 ~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~--~g~~~l~ 565 (591)
T PRK13616 523 YVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDA--RAVLQLP 565 (591)
T ss_pred EEecCCccccccCCCCccCceEEEecCCceEEEEcC--CceEEec
Confidence 999999887654433222233456655668999985 3344443
No 160
>KOG0272|consensus
Probab=67.61 E-value=1.3e+02 Score=29.60 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=123.6
Q ss_pred CCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCC-CeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccC
Q psy14258 144 THKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTS-GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVY 218 (440)
Q Consensus 144 ~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~-g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~ 218 (440)
.+++..| +...+-+...-.....+.+...+..++...|.. +.=..|-.. + +.+.-.+++++....-+..-...
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~-D-gtvklw~~~~e~~l~~l~gH~~R 263 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASA-D-GTVKLWKLSQETPLQDLEGHLAR 263 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeecc-C-CceeeeccCCCcchhhhhcchhh
Confidence 3345555 444443333223333334455677788888862 211111111 1 23333333332111111112345
Q ss_pred ceEEEEeCCCCEEEEEeCCC-CcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCC--CeEEEEeccCCCce
Q psy14258 219 PYGVTVDFPTKHVYWVDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRN--QSIIRVNKFNSDDY 294 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~~~-~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~--~~i~~~~~~~g~~~ 294 (440)
...+++.|.+..|--+.... -+++-+ . +..+.+.........+++++..| .|-.|-... ++|| +..+|+.+
T Consensus 264 Vs~VafHPsG~~L~TasfD~tWRlWD~--~-tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW--DlRtgr~i 338 (459)
T KOG0272|consen 264 VSRVAFHPSGKFLGTASFDSTWRLWDL--E-TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW--DLRTGRCI 338 (459)
T ss_pred heeeeecCCCceeeecccccchhhccc--c-cchhhHhhcccccccceeEecCCCceeeccCccchhhee--ecccCcEE
Confidence 56678887666554332111 122222 1 12222222212345677887655 666654322 3444 66678777
Q ss_pred EEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEE
Q psy14258 295 ETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYA 373 (440)
Q Consensus 295 ~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~ 373 (440)
.++.+-. ..+++... |++|.+.+-+..+.++..++-.. .. -.++|.. -.-.+.+-|.+..|+..++
T Consensus 339 m~L~gH~k~I~~V~fs----------PNGy~lATgs~Dnt~kVWDLR~r-~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFS----------PNGYHLATGSSDNTCKVWDLRMR-SE-LYTIPAH-SNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred EEecccccceeeEeEC----------CCceEEeecCCCCcEEEeeeccc-cc-ceecccc-cchhhheEecccCCeEEEE
Confidence 7666533 34455444 78899988777677777776555 11 2233322 2345678899988888888
Q ss_pred ECCCCeEEEEecCCCC-eEEEEECCCCCeeeEEEecCC
Q psy14258 374 ELTSYVIERRKMFGRG-KEVVIDTGIYNVEGMAVDWMA 410 (440)
Q Consensus 374 d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~ 410 (440)
-...+++.--...+-. .+.+.. .-+.+..+++-..+
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaG-He~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAG-HEGKVISLDISPDS 442 (459)
T ss_pred cccCcceeeecCCCcccchhhcC-CccceEEEEeccCC
Confidence 8888887666655422 222222 22445555555433
No 161
>KOG0646|consensus
Probab=67.55 E-value=1.4e+02 Score=29.80 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=65.9
Q ss_pred eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC--eE--------
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG--KE-------- 391 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~--~~-------- 391 (440)
..|+-+. ..+.++..++... ...+.+..-..+.++++||.+..+|+- +..+.|+..++.+.. +.
T Consensus 189 ~rl~TaS-~D~t~k~wdlS~g----~LLlti~fp~si~av~lDpae~~~yiG-t~~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 189 ARLYTAS-EDRTIKLWDLSLG----VLLLTITFPSSIKAVALDPAERVVYIG-TEEGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred ceEEEec-CCceEEEEEeccc----eeeEEEecCCcceeEEEcccccEEEec-CCcceEEeeehhcCCcccccccccccc
Confidence 3444332 2355666666554 334444433457799999988866654 578899988876543 11
Q ss_pred -------EEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258 392 -------VVID-TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 392 -------~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l 437 (440)
.++. .+-..+.=||+. +.+.|-.+-...+.|-+-+..-+|..|+|
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cccceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 1111 111256678887 56678888777888888887655444444
No 162
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=67.47 E-value=2.5 Score=25.97 Aligned_cols=25 Identities=48% Similarity=0.800 Sum_probs=17.7
Q ss_pred CCCCCC--CcccCCCceEEc-cCCeeee
Q psy14258 20 DGSCDQ--TCTNTHLSYTYT-DEGFSFQ 44 (440)
Q Consensus 20 ~~~Cs~--~C~n~~~~~~C~-~~g~~l~ 44 (440)
++.|+. .|.+++++|.|. .+||..+
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCccC
Confidence 456666 788999999999 9999754
No 163
>KOG0291|consensus
Probab=66.83 E-value=1.8e+02 Score=30.99 Aligned_cols=189 Identities=10% Similarity=0.029 Sum_probs=101.9
Q ss_pred ceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEec-CEEEEEecCCCeEEEEeccCCCceEEE
Q psy14258 219 PYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFE-NNLFVTSWRNQSIIRVNKFNSDDYETI 297 (440)
Q Consensus 219 P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~-~~ly~td~~~~~i~~~~~~~g~~~~~~ 297 (440)
.+.++..+.+ .+..+-...++|..-+...+.-.+-... ......++.+.. +++.++..-.++|...+....+...++
T Consensus 353 i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 353 ITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred eeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 3445554333 3333444445555555433322222221 122334555443 355566666788877776655554443
Q ss_pred ecCCCCeE---EEEeccCCCCCCCCCceeEEee-cCCccEEEEEEcCCCCCCceeeeeecCCCCce-EEEEEcCCCEEEE
Q psy14258 298 ANFSRPFA---IHIYHRQKQPDALKPSTFLLYA-KGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS-VIDYHEKEEYIYY 372 (440)
Q Consensus 298 ~~~~~p~~---~~v~~~~~qp~~~~~~~~l~~~-~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~-~l~~d~~~~~vy~ 372 (440)
... .|.. +++. |.+.|+.| ......|+..++.+. ...=.+.+...|. +|.|+|.+. +..
T Consensus 431 t~P-~p~QfscvavD----------~sGelV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~~-~La 494 (893)
T KOG0291|consen 431 TSP-EPIQFSCVAVD----------PSGELVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDGS-LLA 494 (893)
T ss_pred cCC-CceeeeEEEEc----------CCCCEEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEccccC-eEE
Confidence 321 1222 2222 44555554 334468888888766 2222344555554 799999877 556
Q ss_pred EECCCCeEEEEecCCC--CeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEe
Q psy14258 373 AELTSYVIERRKMFGR--GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKI 428 (440)
Q Consensus 373 ~d~~~~~I~r~~~~g~--~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~ 428 (440)
+-...++|++=++-++ ..|++-. ...+-++++-+.++.|=++.. .+.|..++.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTl-dgqItf~d~ 549 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATL-DGQITFFDI 549 (893)
T ss_pred eccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEe-cceEEEEEh
Confidence 7678899999888665 3444422 245777777777777766643 334544443
No 164
>KOG2111|consensus
Probab=63.83 E-value=1.4e+02 Score=28.41 Aligned_cols=145 Identities=18% Similarity=0.156 Sum_probs=86.9
Q ss_pred cCCcEEEe--ceEEEEecCCceEEEEEcCCCCCceEEE-EcCCCCeEEEEEcCCCCCcEEEEeCCCCCc--eeEEecCcc
Q psy14258 143 VTHKIVYP--EAIYFCTHYMEHCMIAIDLNLSKPRGIA-LDPTSGYMFFTKWGATRPMLERSLLDGTER--FPMVTHKIV 217 (440)
Q Consensus 143 ~~~~lY~~--~~I~~~~~dg~~~~~~~~~~~~~P~~ia-vd~~~g~lywtd~~~~~~~I~r~~~dG~~~--~~l~~~~~~ 217 (440)
..++|.++ ++|++.+.....+..-.-....+|+|+. ++|....-+.+=.+...++|+..++.-... ..++..-..
T Consensus 103 ~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s 182 (346)
T KOG2111|consen 103 RRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS 182 (346)
T ss_pred cCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC
Confidence 34445555 8888887764333222223456788875 566666666665555557899988876555 244443333
Q ss_pred CceEEEEeCCCCEEEEEeCCCCcEEEEE--ccCCCcEEEecCCccCceeeeeEecCEEEEEe-cCCCeEEEEec
Q psy14258 218 YPYGVTVDFPTKHVYWVDTYLDFIDRIN--YDGTDRKTIRKGFPVQNLYDITVFENNLFVTS-WRNQSIIRVNK 288 (440)
Q Consensus 218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~--~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td-~~~~~i~~~~~ 288 (440)
...-+++. ..|.+.-+-+..+++.++- .+|+.+..+..|..-.+.+-|++..+..|.+- ...++|..+..
T Consensus 183 ~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 183 DIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred ceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 44557776 4555555556666666654 36777777766644456788888877554443 33455555443
No 165
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=63.42 E-value=1e+02 Score=26.94 Aligned_cols=103 Identities=10% Similarity=0.040 Sum_probs=65.1
Q ss_pred eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCC
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIY 399 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~ 399 (440)
.|+++....+..|...++++. ....+.. .....|.+.|.+++|..+..+ .+.|.-.+.+ ..+.+....-.
T Consensus 73 ~favi~g~~~~~v~lyd~~~~-----~i~~~~~-~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~ 144 (194)
T PF08662_consen 73 EFAVIYGSMPAKVTLYDVKGK-----KIFSFGT-QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHS 144 (194)
T ss_pred EEEEEEccCCcccEEEcCccc-----EeEeecC-CCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCEEeeccccC
Confidence 444443223345666665433 2222221 244579999999999888744 4667777776 34455544445
Q ss_pred CeeeEEEecCCCcEEEEeCC-----CCeEEEEEeCCCe
Q psy14258 400 NVEGMAVDWMANNLYWTDAG-----IGTINVAKISDFS 432 (440)
Q Consensus 400 ~~~glAvD~~~~~lYwtd~~-----~~~I~~~~~~g~~ 432 (440)
.+..++.++.++.|-.+... .+.+.+.+..|+.
T Consensus 145 ~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 145 DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 67889999988877766542 5678888999843
No 166
>KOG0273|consensus
Probab=63.28 E-value=1.7e+02 Score=29.33 Aligned_cols=141 Identities=10% Similarity=0.057 Sum_probs=75.8
Q ss_pred cccccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258 132 SLLDGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT 206 (440)
Q Consensus 132 ~~~~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~ 206 (440)
.+....+ -|||.++.=|.+ +.|.+|.++++....-+...-....+|..|| +|.|.-+-.....-+|+-..-++.
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcc
Confidence 3444556 799999999988 7899999998776543334557788999999 566666643331134444333322
Q ss_pred Cc------eeEEecCccCceEE-EEeC-CCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecCEEEEEe
Q psy14258 207 ER------FPMVTHKIVYPYGV-TVDF-PTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFENNLFVTS 277 (440)
Q Consensus 207 ~~------~~l~~~~~~~P~gl-~vD~-~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td 277 (440)
.. ++|+.. ...|.|- +=.+ .+..|.|+ ...+.+..-+. +|.-..++..+ -...+++++..+-=|.+.
T Consensus 394 ~~~l~~Hskei~t~-~wsp~g~v~~n~~~~~~l~sa-s~dstV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTI-KWSPTGPVTSNPNMNLMLASA-SFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred hhhhhhhccceeeE-eecCCCCccCCCcCCceEEEe-ecCCeEEEEEccCCceeEeeccC--CCceEEEEecCCCcEEEe
Confidence 11 122211 0112221 1111 23334444 33445555554 45545555443 223467777765444443
No 167
>KOG0772|consensus
Probab=62.94 E-value=1.8e+02 Score=29.56 Aligned_cols=249 Identities=15% Similarity=0.112 Sum_probs=119.8
Q ss_pred CCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-----eeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEE
Q psy14258 169 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-----FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDR 243 (440)
Q Consensus 169 ~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-----~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~ 243 (440)
.+..-..++++||. |-=|.+-.-. -.|...++.|-+. +.|....-...+.+...+.++.|.++. +......
T Consensus 165 hgtk~Vsal~~Dp~-GaR~~sGs~D--y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs-g~aqakl 240 (641)
T KOG0772|consen 165 HGTKIVSALAVDPS-GARFVSGSLD--YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS-GSAQAKL 240 (641)
T ss_pred CCceEEEEeeecCC-Cceeeecccc--ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe-cCcceeE
Confidence 34455678999994 5555554332 3666666666332 122222333456677776677776664 5566778
Q ss_pred EEccCCCcEEEecCCc--------cCceeeee---E--ecCEEEEEecCCC--eEEEEeccCCCceEEEec-CCC----C
Q psy14258 244 INYDGTDRKTIRKGFP--------VQNLYDIT---V--FENNLFVTSWRNQ--SIIRVNKFNSDDYETIAN-FSR----P 303 (440)
Q Consensus 244 ~~~dG~~~~~i~~~~~--------~~~p~gl~---~--~~~~ly~td~~~~--~i~~~~~~~g~~~~~~~~-~~~----p 303 (440)
++.||........|.. -.|.-.|. + +....|.|....+ +||-++... +..+++.. ... |
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccCCCcccC
Confidence 8888876555444310 11222222 1 1224455544444 444444322 12223321 111 1
Q ss_pred eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC--CceEEEEEcCCCEEEEEECCCCeEE
Q psy14258 304 FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK--RPSVIDYHEKEEYIYYAELTSYVIE 381 (440)
Q Consensus 304 ~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~--~p~~l~~d~~~~~vy~~d~~~~~I~ 381 (440)
.....+ ++++-++.+--..+.|...+...-.......+--+... ..+.|+|...+++| .+-...+++.
T Consensus 320 ~tsC~~---------nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLK 389 (641)
T KOG0772|consen 320 VTSCAW---------NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLK 389 (641)
T ss_pred ceeeec---------CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh-hhccCCCcee
Confidence 112222 34444544333346666666522211111111111221 45678887766633 4444455555
Q ss_pred EEecCCCC----------------------eEEEEECCCCCeeeEEEecCCCcEEEEeCCC-CeEEEEEeCCCeeeEE
Q psy14258 382 RRKMFGRG----------------------KEVVIDTGIYNVEGMAVDWMANNLYWTDAGI-GTINVAKISDFSIRKV 436 (440)
Q Consensus 382 r~~~~g~~----------------------~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~-~~I~~~~~~g~~~~~~ 436 (440)
.-+++-.+ .+.++..|-..|.|++ .++||+-|..+ .+|..+.+.+.+..++
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~----~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT----AGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC----CceEEEEeccceeeEEEecCCCceEEEE
Confidence 44443221 2233334556667666 45787777653 5666666665444443
No 168
>KOG0650|consensus
Probab=60.94 E-value=2.1e+02 Score=29.68 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=52.4
Q ss_pred CCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT 249 (440)
Q Consensus 172 ~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~ 249 (440)
..|....+.|..-+||++... .|...++.-.....-+..+..|...|++++.+++|+... ..+++-..++|-+
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldls 639 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLS 639 (733)
T ss_pred CceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccC
Confidence 578899999999999999865 455566633211111224577899999999889988764 5667888887754
No 169
>KOG4441|consensus
Probab=60.79 E-value=2.2e+02 Score=29.83 Aligned_cols=188 Identities=13% Similarity=0.113 Sum_probs=100.6
Q ss_pred EEEEeCCCCEEEEEeCCC------CcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCC-----CeEEEEecc
Q psy14258 221 GVTVDFPTKHVYWVDTYL------DFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN-----QSIIRVNKF 289 (440)
Q Consensus 221 gl~vD~~~~~ly~~d~~~------~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~-----~~i~~~~~~ 289 (440)
|+++ .++.||++=... +.+++.|.+...=..+..=..-+.-+|++..++.||..-..+ ..|.+.+..
T Consensus 327 ~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEE--ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC
Confidence 4555 477888875444 367777776554333322111345579999999999876433 235555554
Q ss_pred CCCceEEEecCCC---CeEEEEeccCCCCCCCCCceeEEeecCC------ccEEEEEEcCCCCCCceeeeeecCCCCce-
Q psy14258 290 NSDDYETIANFSR---PFAIHIYHRQKQPDALKPSTFLLYAKGK------PAIIKGLTFKRDGTTEQAIMPITDLKRPS- 359 (440)
Q Consensus 290 ~g~~~~~~~~~~~---p~~~~v~~~~~qp~~~~~~~~l~~~~~~------~~~I~~i~~~~~~~~~~~~~~~~~~~~p~- 359 (440)
+.+... +..... -.++.++ ++.||+.-+. ...+...++..+ ....++....++
T Consensus 405 ~~~W~~-va~m~~~r~~~gv~~~-----------~g~iYi~GG~~~~~~~l~sve~YDP~t~-----~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 405 TNKWTP-VAPMLTRRSGHGVAVL-----------GGKLYIIGGGDGSSNCLNSVECYDPETN-----TWTLIAPMNTRRS 467 (571)
T ss_pred CCcccc-cCCCCcceeeeEEEEE-----------CCEEEEEcCcCCCccccceEEEEcCCCC-----ceeecCCcccccc
Confidence 333322 222221 2234444 4566666442 134455554444 233333333333
Q ss_pred EEEEEcCCCEEEEEEC-----CCCeEEEEecCCCCeEEEEECCC-CCeeeEEEecCCCcEEEEeC-----CCCeEEEEEe
Q psy14258 360 VIDYHEKEEYIYYAEL-----TSYVIERRKMFGRGKEVVIDTGI-YNVEGMAVDWMANNLYWTDA-----GIGTINVAKI 428 (440)
Q Consensus 360 ~l~~d~~~~~vy~~d~-----~~~~I~r~~~~g~~~~~~~~~~~-~~~~glAvD~~~~~lYwtd~-----~~~~I~~~~~ 428 (440)
+...-..+++||+.-. ...++++.++....-..+..... ....|+++. ++.||.+-. ..++|+.+++
T Consensus 468 ~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 2223334789999843 23458888888754444432211 234566665 888999832 3467777765
Q ss_pred C
Q psy14258 429 S 429 (440)
Q Consensus 429 ~ 429 (440)
.
T Consensus 546 ~ 546 (571)
T KOG4441|consen 546 E 546 (571)
T ss_pred C
Confidence 5
No 170
>PRK13616 lipoprotein LpqB; Provisional
Probab=59.60 E-value=2.3e+02 Score=29.77 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCEEEEEEC-CCCeEEEEecCCCCeEEEEECC-CCCeeeEEEecCCCcEEEEeC
Q psy14258 358 PSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTG-IYNVEGMAVDWMANNLYWTDA 418 (440)
Q Consensus 358 p~~l~~d~~~~~vy~~d~-~~~~I~r~~~~g~~~~~~~~~~-~~~~~glAvD~~~~~lYwtd~ 418 (440)
+..+++-.. +.|++... ....++++.+||...+.+...+ ......+|-. ...||.+|+
T Consensus 499 ~~~l~W~~~-~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~--~~~iyv~~~ 558 (591)
T PRK13616 499 AVSLDWRTG-DSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAAS--PSTVYVTDA 558 (591)
T ss_pred cccceEecC-CEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecC--CceEEEEcC
Confidence 466766554 44766643 3456999999997655432222 2345556665 357999986
No 171
>KOG0272|consensus
Probab=59.29 E-value=1.9e+02 Score=28.57 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=53.0
Q ss_pred CCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 354 DLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 354 ~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
.+....+++|+|. |+..-+-...+++..=++.+...--.+.+.-+-++.+-+++.+|+.-.|-+..+++.+-+..+
T Consensus 344 H~k~I~~V~fsPN-Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 344 HIKEILSVAFSPN-GYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred cccceeeEeECCC-ceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 3556679999995 666677777777776677664433334456677888999987887777776677777765444
No 172
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=59.04 E-value=1.5e+02 Score=27.34 Aligned_cols=109 Identities=10% Similarity=0.028 Sum_probs=63.3
Q ss_pred eeccccccce-eee--ecCCcEEEe-----ceEEEEec----CCceEEEEEcC--CCCCceEEEEcCCCCeEEEEEcCCC
Q psy14258 129 LERSLLDGTE-RFP--MVTHKIVYP-----EAIYFCTH----YMEHCMIAIDL--NLSKPRGIALDPTSGYMFFTKWGAT 194 (440)
Q Consensus 129 ~~~~~~~p~~-avD--~~~~~lY~~-----~~I~~~~~----dg~~~~~~~~~--~~~~P~~iavd~~~g~lywtd~~~~ 194 (440)
..+++..|.| |+- +.++-.|+- +.|..+.+ +|+-...++.. --.+-.|+++|-+.|.||+++..
T Consensus 148 ~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd-- 225 (364)
T COG4247 148 YSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED-- 225 (364)
T ss_pred cccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeecc--
Confidence 4567778888 763 444444433 33444332 23333233321 12467899999999999999977
Q ss_pred CCcEEEEeCC---CCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEE
Q psy14258 195 RPMLERSLLD---GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFID 242 (440)
Q Consensus 195 ~~~I~r~~~d---G~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~ 242 (440)
-.||+...+ |..++ ++.. +.--..|+-|..+-.||+...+.+.+.
T Consensus 226 -vaiWK~~Aep~~G~~g~-~idr-~~d~~~LtdDvEGltiYy~pnGkGYL~ 273 (364)
T COG4247 226 -VAIWKYEAEPNRGNTGR-LIDR-IKDLSYLTDDVEGLTIYYGPNGKGYLL 273 (364)
T ss_pred -ceeeecccCCCCCCccc-hhhh-hcCchhhcccccccEEEEcCCCcEEEE
Confidence 378887654 33333 3321 111134777777778888766555443
No 173
>KOG0289|consensus
Probab=58.61 E-value=2e+02 Score=28.60 Aligned_cols=190 Identities=9% Similarity=0.065 Sum_probs=101.0
Q ss_pred CceEEEEeCCCCEEEEEeCCCCcEEEEEc-cCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceE
Q psy14258 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINY-DGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYE 295 (440)
Q Consensus 218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~-dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~ 295 (440)
..+++.+.+.+++|.|++.. +..--.++ +|.....+-....--.-...+++.| .||-+-..++.|...+..++....
T Consensus 305 ~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred cceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc
Confidence 35899999999999999754 33333333 5655554433110112345566666 566666666666655655444332
Q ss_pred EEecCCCC-eEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEE
Q psy14258 296 TIANFSRP-FAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAE 374 (440)
Q Consensus 296 ~~~~~~~p-~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d 374 (440)
-+.+-..| ..+++- .++|.+++....+.|...++-.... -..+++........+.||.-+.+|-.+
T Consensus 384 ~Fpght~~vk~i~Fs----------ENGY~Lat~add~~V~lwDLRKl~n--~kt~~l~~~~~v~s~~fD~SGt~L~~~- 450 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFS----------ENGYWLATAADDGSVKLWDLRKLKN--FKTIQLDEKKEVNSLSFDQSGTYLGIA- 450 (506)
T ss_pred cCCCCCCceeEEEec----------cCceEEEEEecCCeEEEEEehhhcc--cceeeccccccceeEEEcCCCCeEEee-
Confidence 22221122 233333 2577777666667788888865521 124455555556789999887766555
Q ss_pred CCCCeEEEEecCCCC-eEEEEE-CCCCCeeeEEEecCCCcEEEEeCCCCeE
Q psy14258 375 LTSYVIERRKMFGRG-KEVVID-TGIYNVEGMAVDWMANNLYWTDAGIGTI 423 (440)
Q Consensus 375 ~~~~~I~r~~~~g~~-~~~~~~-~~~~~~~glAvD~~~~~lYwtd~~~~~I 423 (440)
...=.||.......+ .+.... ...+...|+.+. ...-|..+.+.+++
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg--~~aq~l~s~smd~~ 499 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG--EHAQYLASTSMDAI 499 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeec--ccceEEeeccchhh
Confidence 223345554432221 221111 122345677776 33455555544444
No 174
>KOG0310|consensus
Probab=58.47 E-value=2.1e+02 Score=28.76 Aligned_cols=205 Identities=9% Similarity=-0.030 Sum_probs=111.6
Q ss_pred eeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-
Q psy14258 60 ECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE- 138 (440)
Q Consensus 60 ~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~- 138 (440)
+.|..+++.....-..+..+...+.-+-|.+..++++.+-.+...+.-..++.+..+ ..+...-...+.
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~----------~~l~~htDYVR~g 159 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ----------AELSGHTDYVRCG 159 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE----------EEecCCcceeEee
Confidence 446666643321112222222226667788888888888777655544445444321 123344556777
Q ss_pred eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec
Q psy14258 139 RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH 214 (440)
Q Consensus 139 avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~ 214 (440)
++-+.++++.++ +.|...+...... .+..-+-+.|-.-.+--.+|.++.+-.+ +.+...++-+..+..-...
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~ 235 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMF 235 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhh
Confidence 888899999999 6787777655432 2222233445444444447889988877 4788888875444322111
Q ss_pred -CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCce-eeeeEecC--EEEEEecCCCeE
Q psy14258 215 -KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL-YDITVFEN--NLFVTSWRNQSI 283 (440)
Q Consensus 215 -~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p-~gl~~~~~--~ly~td~~~~~i 283 (440)
-......|.+-..+.+|+-+- -.+.+..++ -++.+++..= ..+.| .++++..| .++.- ..++.+
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd--~t~~Kvv~s~-~~~~pvLsiavs~dd~t~viG-msnGlv 303 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGS-LDRHVKVFD--TTNYKVVHSW-KYPGPVLSIAVSPDDQTVVIG-MSNGLV 303 (487)
T ss_pred cccceEEEEEeecCCceEeecc-cccceEEEE--ccceEEEEee-ecccceeeEEecCCCceEEEe-ccccee
Confidence 233456677754556666432 233444443 2444555441 13344 56777653 55554 334443
No 175
>KOG0284|consensus
Probab=58.06 E-value=1.9e+02 Score=28.37 Aligned_cols=225 Identities=9% Similarity=0.048 Sum_probs=119.1
Q ss_pred CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcE
Q psy14258 173 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK 252 (440)
Q Consensus 173 ~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~ 252 (440)
-.+++...+...+|.=.|.+ +-|....++-.+.+.+....-.....+++.+ ++-.|.+-+..+.|..=+..-...+
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~g---G~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee 215 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKG---GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEE 215 (464)
T ss_pred cceeEEEccCCCEEEEcCCC---ceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchh
Confidence 45566666544444444433 3444444444444333222223456788876 5666666666677766664333232
Q ss_pred EEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCC
Q psy14258 253 TIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGK 330 (440)
Q Consensus 253 ~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~ 330 (440)
.++.+. --.+..++.+.. .|..+-...+.|...+..+|.....+..-. ..++++.. |. +.+|+ +-++
T Consensus 216 ~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~-----~n----~N~Ll-t~sk 284 (464)
T KOG0284|consen 216 RVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFN-----PN----GNWLL-TGSK 284 (464)
T ss_pred heeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEc-----CC----CCeeE-EccC
Confidence 233431 234555665543 445555555677777887887765544332 23444333 11 13343 3344
Q ss_pred ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe-EEEEECCCCCeeeEEEecC
Q psy14258 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK-EVVIDTGIYNVEGMAVDWM 409 (440)
Q Consensus 331 ~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~-~~~~~~~~~~~~glAvD~~ 409 (440)
...+..+++-.. .+....-..-.....++..|....|+.+-...+.|.--.+..... ..+-.+....+..||..++
T Consensus 285 D~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPl 361 (464)
T KOG0284|consen 285 DQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPL 361 (464)
T ss_pred CceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecccc
Confidence 455555665421 011111111224567888888888988887888888877774332 2222234456778888876
Q ss_pred CCcEEEE
Q psy14258 410 ANNLYWT 416 (440)
Q Consensus 410 ~~~lYwt 416 (440)
+. |.-+
T Consensus 362 Gh-il~t 367 (464)
T KOG0284|consen 362 GH-ILAT 367 (464)
T ss_pred ce-eEee
Confidence 64 5555
No 176
>KOG1272|consensus
Probab=56.77 E-value=47 Score=33.04 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=39.7
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE--ECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 361 IDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI--DTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 361 l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~--~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+.-+|-+. |.-.-...+++.--+++.. +.++ ....+.+++||||. +|+...|....+.+.+-++.+
T Consensus 257 m~qNP~Na-Vih~GhsnGtVSlWSP~sk--ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 257 MKQNPYNA-VIHLGHSNGTVSLWSPNSK--EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hhcCCccc-eEEEcCCCceEEecCCCCc--chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecc
Confidence 33344333 3334445566655555542 2222 24557889999996 555666666678899999887
No 177
>PLN00181 protein SPA1-RELATED; Provisional
Probab=56.58 E-value=3e+02 Score=30.08 Aligned_cols=234 Identities=7% Similarity=-0.045 Sum_probs=116.0
Q ss_pred ccce-eeeecCCcEEEe---ceEEEEecCCc-----e---EEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEe
Q psy14258 135 DGTE-RFPMVTHKIVYP---EAIYFCTHYME-----H---CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSL 202 (440)
Q Consensus 135 ~p~~-avD~~~~~lY~~---~~I~~~~~dg~-----~---~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~ 202 (440)
...+ ++++.++.|..+ +.|.+.+.... . ....+. ......+++.++..+....+-... +.|...+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~D--g~v~lWd 561 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFE--GVVQVWD 561 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCC--CeEEEEE
Confidence 3555 777665533333 56777665321 1 011111 123456777777544433333222 5777777
Q ss_pred CCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC-cEEEecCCccCceeeeeEe--cCEEEEEecC
Q psy14258 203 LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD-RKTIRKGFPVQNLYDITVF--ENNLFVTSWR 279 (440)
Q Consensus 203 ~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~-~~~i~~~~~~~~p~gl~~~--~~~ly~td~~ 279 (440)
+........+...-.....+++++..+.++++-...+.|..-++.... ...+. . ......+.+. .+..+.+-..
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~--~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T--KANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c--CCCeEEEEEeCCCCCEEEEEeC
Confidence 764433222222233466788876666666666666778777775332 22222 1 1233445543 2345555556
Q ss_pred CCeEEEEeccCCCc-eEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCC--CceeeeeecCC
Q psy14258 280 NQSIIRVNKFNSDD-YETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT--TEQAIMPITDL 355 (440)
Q Consensus 280 ~~~i~~~~~~~g~~-~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~--~~~~~~~~~~~ 355 (440)
++.|...+..+++. ...+.+-. ....+.+. ...+| ++-+..+.|...++..... .......+.+.
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~----------~~~~l-vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV----------DSSTL-VSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEe----------CCCEE-EEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 77777777655442 22222221 22334332 12333 3333446787777753210 11112222232
Q ss_pred C-CceEEEEEcCCCEEEEEECCCCeEEEEecC
Q psy14258 356 K-RPSVIDYHEKEEYIYYAELTSYVIERRKMF 386 (440)
Q Consensus 356 ~-~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~ 386 (440)
. ....+++++.++. ..+-...+.|...+..
T Consensus 708 ~~~i~~v~~s~~~~~-lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 708 TNVKNFVGLSVSDGY-IATGSETNEVFVYHKA 738 (793)
T ss_pred CCCeeEEEEcCCCCE-EEEEeCCCEEEEEECC
Confidence 2 2356888887664 4444467777776654
No 178
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=56.27 E-value=1.8e+02 Score=27.55 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 357 RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 357 ~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+.-.|+++..++.+.++....+++...+... .+.+....+...-|+|....+ |+..++.+.+......+
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t--g~~~~~~~l~D~cGva~~~~~---f~~ssG~G~~~~~~~~~ 286 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAAT--GRLLGSVPLPDACGVAPTDDG---FLVSSGQGQLIRLSPDG 286 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCC--CCEeeccccCceeeeeecCCc---eEEeCCCccEEEccCcc
Confidence 5558999999999999999999998886653 234444456678888887433 77777888877776555
No 179
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=53.77 E-value=94 Score=32.01 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=44.4
Q ss_pred CCCCCceEEEEcCCCCeEEEEEcCCC--------------CCcEEEEeCCCCCc------eeE-Eec-------------
Q psy14258 169 LNLSKPRGIALDPTSGYMFFTKWGAT--------------RPMLERSLLDGTER------FPM-VTH------------- 214 (440)
Q Consensus 169 ~~~~~P~~iavd~~~g~lywtd~~~~--------------~~~I~r~~~dG~~~------~~l-~~~------------- 214 (440)
..+..|++|++.|..|.+|++..... -++|.|....+... -.+ +..
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 35789999999999999999965432 24677776654311 111 111
Q ss_pred ----CccCceEEEEeCCCCEEEEEeCC
Q psy14258 215 ----KIVYPYGVTVDFPTKHVYWVDTY 237 (440)
Q Consensus 215 ----~~~~P~gl~vD~~~~~ly~~d~~ 237 (440)
-+..|-+|++| ..++|+++..+
T Consensus 494 ~~~~~f~~PDnl~fD-~~GrLWi~TDg 519 (616)
T COG3211 494 INANWFNSPDNLAFD-PWGRLWIQTDG 519 (616)
T ss_pred cccccccCCCceEEC-CCCCEEEEecC
Confidence 13449999999 56677766543
No 180
>KOG2055|consensus
Probab=52.13 E-value=2.6e+02 Score=28.01 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=50.4
Q ss_pred eeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCe-EEEEECCCCC
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK-EVVIDTGIYN 400 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~-~~~~~~~~~~ 400 (440)
.||.++ ++.+.|..+......--+ ..-+. ....++.|+.++..| |+..+.+.|+..+++.... -.+...|--.
T Consensus 316 ~fia~~-G~~G~I~lLhakT~eli~--s~Kie--G~v~~~~fsSdsk~l-~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 316 NFIAIA-GNNGHIHLLHAKTKELIT--SFKIE--GVVSDFTFSSDSKEL-LASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred CeEEEc-ccCceEEeehhhhhhhhh--eeeec--cEEeeEEEecCCcEE-EEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 344443 556777777655441111 11111 135577888766544 5555667888887775322 2223332112
Q ss_pred eeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 401 VEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 401 ~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
-.-|+.-. .+.++-+-+..+-|.+++.+
T Consensus 390 gts~~~S~-ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 390 GTSLCISL-NGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eeeeeecC-CCceEEeccCcceEEEeccc
Confidence 22334332 33344455666777777644
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=51.50 E-value=1.7e+02 Score=25.62 Aligned_cols=95 Identities=7% Similarity=0.001 Sum_probs=57.5
Q ss_pred cce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258 136 GTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF 209 (440)
Q Consensus 136 p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~ 209 (440)
... +..+.+..+.++ .+|...+..+.....+ .-.....|...|...+|..+..+..++.|...+.+ ..+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~ 136 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKK 136 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--CCE
Confidence 444 555566665555 4677788875544433 22455679999966666666655433567777776 444
Q ss_pred eEEecCccCceEEEEeCCCCEEEEEe
Q psy14258 210 PMVTHKIVYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 210 ~l~~~~~~~P~gl~vD~~~~~ly~~d 235 (440)
.+..........++.+|.+..|..+.
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEE
Confidence 44443444566777887776666554
No 182
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=51.25 E-value=62 Score=20.57 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=20.9
Q ss_pred eeeeeEecCEEEEEecCCCeEEEEeccCCC
Q psy14258 263 LYDITVFENNLFVTSWRNQSIIRVNKFNSD 292 (440)
Q Consensus 263 p~gl~~~~~~ly~td~~~~~i~~~~~~~g~ 292 (440)
..++++.++++|++++. +.+..+|..+-.
T Consensus 4 a~~v~v~g~yaYva~~~-~Gl~IvDISnPs 32 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGN-NGLVIVDISNPS 32 (42)
T ss_pred EEEEEEECCEEEEEeCC-CCEEEEECCCCC
Confidence 56789999999999875 445566654433
No 183
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.50 E-value=1.9e+02 Score=27.39 Aligned_cols=97 Identities=6% Similarity=-0.079 Sum_probs=53.5
Q ss_pred eeeecCCcEEEeceEEEEecCCceEEEEEcCCCCCceEEEEcCC-CCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCcc
Q psy14258 139 RFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPT-SGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217 (440)
Q Consensus 139 avD~~~~~lY~~~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~-~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~ 217 (440)
|++|+.+.||+-+ .+..|...-.... ++.+=+++.. +.|...+.+-...+.|..+++.
T Consensus 41 AV~~vDd~IyFGG------------------WVHAPa~y~gk~~g~~~IdF~NKY---SHVH~yd~e~~~VrLLWkesih 99 (339)
T PF09910_consen 41 AVEWVDDFIYFGG------------------WVHAPAVYEGKGDGRATIDFRNKY---SHVHEYDTENDSVRLLWKESIH 99 (339)
T ss_pred eeeeecceEEEee------------------eecCCceeeeccCCceEEEEeecc---ceEEEEEcCCCeEEEEEecccC
Confidence 9999999888632 2334443333221 2334444544 3566666554444445544433
Q ss_pred C-------ceEEEEeCCCCEEEEEeCCCC---cEEEEEccCCCcEEEec
Q psy14258 218 Y-------PYGVTVDFPTKHVYWVDTYLD---FIDRINYDGTDRKTIRK 256 (440)
Q Consensus 218 ~-------P~gl~vD~~~~~ly~~d~~~~---~i~~~~~dG~~~~~i~~ 256 (440)
+ .+.|.-|+.+++||++-.... -|++++..+...+.+..
T Consensus 100 ~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 100 DKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred CccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccC
Confidence 3 345777888888888743222 56666665555555443
No 184
>KOG1219|consensus
Probab=50.10 E-value=9.1 Score=45.37 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=28.5
Q ss_pred CCcee-e-cccCCCCCCCCC--CcccCCCceEEc-cCCeeee
Q psy14258 8 KTQCV-D-ADECLIDGSCDQ--TCTNTHLSYTYT-DEGFSFQ 44 (440)
Q Consensus 8 ~~~C~-d-~~~C~~~~~Cs~--~C~n~~~~~~C~-~~g~~l~ 44 (440)
|..|+ + ++||+. ..|.+ .|.|.+|+|.|. ..||..+
T Consensus 3934 G~~Ce~~Gi~eCs~-n~C~~gg~C~n~~gsf~CncT~g~~gr 3974 (4289)
T KOG1219|consen 3934 GKRCEARGISECSK-NVCGTGGQCINIPGSFHCNCTPGILGR 3974 (4289)
T ss_pred Cceeeccccccccc-ccccCCceeeccCCceEeccChhHhcc
Confidence 57788 4 788886 46766 899999999999 8888744
No 185
>KOG0293|consensus
Probab=49.79 E-value=2.7e+02 Score=27.54 Aligned_cols=190 Identities=6% Similarity=0.023 Sum_probs=104.0
Q ss_pred ccce-eeeecCCcEEEe----ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce
Q psy14258 135 DGTE-RFPMVTHKIVYP----EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF 209 (440)
Q Consensus 135 ~p~~-avD~~~~~lY~~----~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~ 209 (440)
++.. |--+.+-. +++ ..|..+++||....-=-.........+|+-+...+|+-.... .+|.-.+..-...+
T Consensus 314 S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d---~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 314 SVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD---KKIRLYNREARVDR 389 (519)
T ss_pred CcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecc---cceeeechhhhhhh
Confidence 4555 55444443 555 578889999965221101122446688888877788887755 46776666544433
Q ss_pred eEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec--CCccCc-eeeeeEe--cCEEEEEecCCCeEE
Q psy14258 210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK--GFPVQN-LYDITVF--ENNLFVTSWRNQSII 284 (440)
Q Consensus 210 ~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~--~~~~~~-p~gl~~~--~~~ly~td~~~~~i~ 284 (440)
.++++. .-...+.+. ..+++..++-..+.|..-++. +...+.. |....+ ...=.+- ++.+..+-...++|+
T Consensus 390 ~lise~-~~its~~iS-~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 390 GLISEE-QPITSFSIS-KDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred cccccc-CceeEEEEc-CCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEE
Confidence 344432 223567776 677888888777878777765 2222211 211111 1111111 124444555678888
Q ss_pred EEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcC
Q psy14258 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFK 340 (440)
Q Consensus 285 ~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~ 340 (440)
.-++.+|+...++.+-.+........|. +++.+.+-+..+.|+...++
T Consensus 466 IWhr~sgkll~~LsGHs~~vNcVswNP~--------~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGHSKTVNCVSWNPA--------DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEeecCCcceeeEEecCCC--------CHHHhhccCCCCeEEEecCC
Confidence 8888888888877665443333333211 13334333444666655443
No 186
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=46.49 E-value=3.4e+02 Score=27.71 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.3
Q ss_pred eEEEEcCCCCeEEEEE
Q psy14258 175 RGIALDPTSGYMFFTK 190 (440)
Q Consensus 175 ~~iavd~~~g~lywtd 190 (440)
.=+|+|..+|.+-|..
T Consensus 257 ~l~Ald~~tG~~~W~~ 272 (488)
T cd00216 257 SIVALDADTGKVKWFY 272 (488)
T ss_pred eEEEEcCCCCCEEEEe
Confidence 4677888888888874
No 187
>KOG0281|consensus
Probab=46.12 E-value=1.8e+02 Score=27.92 Aligned_cols=139 Identities=11% Similarity=0.065 Sum_probs=80.8
Q ss_pred EEEEEecCCCeEEEEeccCCCceEE-EecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceee-
Q psy14258 272 NLFVTSWRNQSIIRVNKFNSDDYET-IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAI- 349 (440)
Q Consensus 272 ~ly~td~~~~~i~~~~~~~g~~~~~-~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~- 349 (440)
++.++-.....|..-+-.+|....+ +...+...++.+. ++ .+++-++...|...+|+.. ......
T Consensus 248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-----------ng-~mvtcSkDrsiaVWdm~sp-s~it~rr 314 (499)
T KOG0281|consen 248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-----------NG-YMVTCSKDRSIAVWDMASP-TDITLRR 314 (499)
T ss_pred eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-----------CC-EEEEecCCceeEEEeccCc-hHHHHHH
Confidence 4666666666666666666665543 3333344444443 23 4455566678888888766 211111
Q ss_pred eeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 350 MPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 350 ~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
+.+........++||. + ..++-.+..+|..-++.....-..+. +.-.|||----.++|.++-+..++|...+..
T Consensus 315 VLvGHrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~efvRtl~---gHkRGIAClQYr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHhhhhhheeeecccc--c-eEEEecCCceEEEEeccceeeehhhh---cccccceehhccCeEEEecCCCceEEEEecc
Confidence 1122233445677764 3 55666778888887776432212222 3567888665677888888888899888764
No 188
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=45.73 E-value=4.4e+02 Score=28.79 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=48.8
Q ss_pred cce---eeeecCCcEEEe-ceEE----EEecCCceEEEEEcCCCCCc-eEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC
Q psy14258 136 GTE---RFPMVTHKIVYP-EAIY----FCTHYMEHCMIAIDLNLSKP-RGIALDPTSGYMFFTKWGATRPMLERSLLDGT 206 (440)
Q Consensus 136 p~~---avD~~~~~lY~~-~~I~----~~~~dg~~~~~~~~~~~~~P-~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~ 206 (440)
|.| |+|..++++-|. +... ....+|. +- ..+..+. ..+++|+..|.+||--.+.. + +.-|.
T Consensus 334 ~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~---~~-~~gg~n~W~~~s~D~~~glvy~ptGn~~-p-----d~~g~ 403 (764)
T TIGR03074 334 PSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGE---TY-TRNTPNSWSVASYDEKLGLVYLPMGNQT-P-----DQWGG 403 (764)
T ss_pred CCcEEEEEECCCCcEeeEEecCCCCcccCCCCCC---Ee-ccCCCCccCceEEcCCCCeEEEeCCCcc-c-----cccCC
Confidence 455 899999988887 2210 0001121 11 1111222 46799999999999653321 1 12233
Q ss_pred CceeEEecCccCceEEEEeCCCCEEEEEeCC
Q psy14258 207 ERFPMVTHKIVYPYGVTVDFPTKHVYWVDTY 237 (440)
Q Consensus 207 ~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~ 237 (440)
.|+.. .+...-.=+|+|..++++-|.-..
T Consensus 404 ~r~~~--~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 404 DRTPA--DEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ccccC--cccccceEEEEeCCCCceEEEecc
Confidence 33211 122233447899999999997643
No 189
>KOG0278|consensus
Probab=45.19 E-value=2.5e+02 Score=25.84 Aligned_cols=141 Identities=13% Similarity=0.091 Sum_probs=84.3
Q ss_pred EecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCce
Q psy14258 268 VFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQ 347 (440)
Q Consensus 268 ~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~ 347 (440)
..+|.-+.+....+.|..-+..+|+.++.+.-...+..+.+.+. ..+|-.+++ +.|.-.+.+.-
T Consensus 152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d---------G~ilTia~g--ssV~Fwdaksf----- 215 (334)
T KOG0278|consen 152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD---------GRILTIAYG--SSVKFWDAKSF----- 215 (334)
T ss_pred eccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccC---------CCEEEEecC--ceeEEeccccc-----
Confidence 34665555556677787778888888877665556666766641 245555555 44433332221
Q ss_pred eeeeecCCCCce---EEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeE
Q psy14258 348 AIMPITDLKRPS---VIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI 423 (440)
Q Consensus 348 ~~~~~~~~~~p~---~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I 423 (440)
-++.....|. +-...|.. .+|++-.....+++++.+... +.....-..+-+.-+.+-+ .|.+|-+-+..++|
T Consensus 216 --~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 216 --GLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTI 291 (334)
T ss_pred --cceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceE
Confidence 0111122232 33356654 699998888899999988543 2222233445567788886 55699988877877
Q ss_pred EEEEe
Q psy14258 424 NVAKI 428 (440)
Q Consensus 424 ~~~~~ 428 (440)
..-..
T Consensus 292 rlWQt 296 (334)
T KOG0278|consen 292 RLWQT 296 (334)
T ss_pred EEEEe
Confidence 65543
No 190
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=42.27 E-value=3e+02 Score=26.47 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=73.4
Q ss_pred cCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCC-CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEE
Q psy14258 260 VQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLT 338 (440)
Q Consensus 260 ~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~ 338 (440)
+..|.--.+.+|.+|=. ......|+.-+.|+.+-++.... .|.=++ +.+...+.|..|.
T Consensus 114 Fe~pTvY~Fsgd~iY~~--f~~~lTR~a~fDGe~VLvvsR~~~~pHLLk------------------vsdLK~g~inpI~ 173 (442)
T PF15416_consen 114 FEKPTVYDFSGDNIYDD--FAGLLTRCASFDGEHVLVVSRGTTKPHLLK------------------VSDLKAGEINPIP 173 (442)
T ss_pred cCCCceEeccCCccchh--hhhhhhcccCCCCcEEEEEecCCCCceeee------------------hhHhhcCCcccee
Confidence 33443334445555532 23445566666665554444322 333333 3334457777777
Q ss_pred cCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCe-----EEEEecCCCCeEEEEECCCCCe----------ee
Q psy14258 339 FKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV-----IERRKMFGRGKEVVIDTGIYNV----------EG 403 (440)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~-----I~r~~~~g~~~~~~~~~~~~~~----------~g 403 (440)
++-.+-.. ...|.-++- ..++++|+++...+. ||--..-.+.+|++....++.. ..
T Consensus 174 LdlTgVtg--------GTf~yNmgA-l~nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S 244 (442)
T PF15416_consen 174 LDLTGVTG--------GTFSYNMGA-LVNGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFS 244 (442)
T ss_pred eecccccC--------cccccchhh-hcCCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCccee
Confidence 76652111 111221111 346889999865543 3333333455777765443322 33
Q ss_pred EEEecCC-CcEEEEeCCCCeEEEEEeCC
Q psy14258 404 MAVDWMA-NNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 404 lAvD~~~-~~lYwtd~~~~~I~~~~~~g 430 (440)
+++|-.+ |.+|+.|.....|-++...+
T Consensus 245 ~nlD~nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 245 LNLDENGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred EEeccCCceEEEecCCccceEEEEEccC
Confidence 6777543 37888887777777777766
No 191
>KOG3567|consensus
Probab=41.75 E-value=3.8e+02 Score=26.97 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=35.0
Q ss_pred CCeEEEEecCCC-CeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 377 SYVIERRKMFGR-GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 377 ~~~I~r~~~~g~-~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
..+|.+++++-. .++-.-..++.-|.||.+|. .|+.|.||.+++++...+..+
T Consensus 444 ~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dk-dgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 444 EDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDK-DGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred cceEEEEcCcchhhhhhccCCceecCCcceecC-CCcEEeecccchhhhhccccc
Confidence 456666666521 12211223456799999995 677888888888888777776
No 192
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=41.37 E-value=19 Score=21.23 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=16.4
Q ss_pred CCCC--CcccCC-CceEEc-cCCeee
Q psy14258 22 SCDQ--TCTNTH-LSYTYT-DEGFSF 43 (440)
Q Consensus 22 ~Cs~--~C~n~~-~~~~C~-~~g~~l 43 (440)
.|.+ .|.... ++|.|. +.||..
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G 30 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTG 30 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEES
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCcc
Confidence 4444 666666 899999 999874
No 193
>KOG2111|consensus
Probab=41.28 E-value=3.2e+02 Score=26.00 Aligned_cols=179 Identities=13% Similarity=0.159 Sum_probs=95.7
Q ss_pred CCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEecCCCCeEEE
Q psy14258 228 TKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIH 307 (440)
Q Consensus 228 ~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~~~~p~~~~ 307 (440)
++-+.|=|.....|......+.-+.+- +.+-.=+.+.++.||+=...+ +-+....+....+|.|+.
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~-----l~r~riVvvl~~~I~VytF~~---------n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVK-----LRRDRIVVVLENKIYVYTFPD---------NPKLLHVIETRSNPKGLC 140 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEE-----EcCCeEEEEecCeEEEEEcCC---------ChhheeeeecccCCCceE
Confidence 445667776666666655554333222 222222344455555433221 112223344555688887
Q ss_pred EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEe-c-
Q psy14258 308 IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRK-M- 385 (440)
Q Consensus 308 v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~-~- 385 (440)
.+.+..- +..|.+.-...+.|+.+++..........++ +.......++.... |.+.=+-...|++-|+. .
T Consensus 141 ~~~~~~~------k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 141 SLCPTSN------KSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred eecCCCC------ceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcC
Confidence 7643332 4566666556789999998776221112233 22334456777654 55555555566666654 3
Q ss_pred CCCCeEEEEECCC--CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 386 FGRGKEVVIDTGI--YNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 386 ~g~~~~~~~~~~~--~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
+|+....+ -.|. ....-||+.+.+..|=. -+.+++++++.+.+
T Consensus 213 ~g~~l~E~-RRG~d~A~iy~iaFSp~~s~Lav-sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQEL-RRGVDRADIYCIAFSPNSSWLAV-SSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEeeee-ecCCchheEEEEEeCCCccEEEE-EcCCCeEEEEEeec
Confidence 34322221 2233 24567898876654433 46789999999887
No 194
>KOG2048|consensus
Probab=39.68 E-value=4.8e+02 Score=27.51 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=105.7
Q ss_pred EEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEec-CCc--cCce--eeeeEecCEEEEEecCCCeEEEEeccCCCceE
Q psy14258 221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK-GFP--VQNL--YDITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295 (440)
Q Consensus 221 gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~-~~~--~~~p--~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~ 295 (440)
.-++.|.++.|-+.-...-+|++.++++ +++.... ... +... ...+++++.++...-....+..+...+....+
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~ke 465 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKE 465 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhh
Confidence 3456667888888777777999999998 5444332 110 1111 23345566555554334455555554443332
Q ss_pred EEe--cCCC---CeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEE-cCCCE
Q psy14258 296 TIA--NFSR---PFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH-EKEEY 369 (440)
Q Consensus 296 ~~~--~~~~---p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d-~~~~~ 369 (440)
+.. .... ...+.+. ..+.|+.++++. +.|+.+++.+..... ..+..+ ...++.++. +..+.
T Consensus 466 l~~~~~~~~~~~I~~l~~S---------sdG~yiaa~~t~-g~I~v~nl~~~~~~~--l~~rln-~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 466 LKSIQSQAKCPSISRLVVS---------SDGNYIAAISTR-GQIFVYNLETLESHL--LKVRLN-IDVTAAAFSPFVRNR 532 (691)
T ss_pred hhccccccCCCcceeEEEc---------CCCCEEEEEecc-ceEEEEEcccceeec--chhccC-cceeeeeccccccCc
Confidence 221 1111 1122222 124788888754 889999987762221 111111 123456666 45556
Q ss_pred EEEEECCCCeEEEEecCCCC-----------eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 370 IYYAELTSYVIERRKMFGRG-----------KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 370 vy~~d~~~~~I~r~~~~g~~-----------~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
|-+++ ..+.++..++...+ .......-.....|+.+|+-+...+|.-. .+.+..++.++
T Consensus 533 lvvat-s~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~~ 602 (691)
T KOG2048|consen 533 LVVAT-SNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFSL 602 (691)
T ss_pred EEEEe-cCCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecCC
Confidence 66655 56777777773321 11111122356789999988888888865 34577777665
No 195
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=39.50 E-value=55 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=17.3
Q ss_pred eeeEecCEEEEEecCCCeEEEEecc
Q psy14258 265 DITVFENNLFVTSWRNQSIIRVNKF 289 (440)
Q Consensus 265 gl~~~~~~ly~td~~~~~i~~~~~~ 289 (440)
++++.++.||+.+. ++.++.++..
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCC
Confidence 45788999999986 7888888764
No 196
>PTZ00421 coronin; Provisional
Probab=39.04 E-value=4.5e+02 Score=26.98 Aligned_cols=207 Identities=8% Similarity=-0.104 Sum_probs=100.0
Q ss_pred eEEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258 82 EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFC 156 (440)
Q Consensus 82 ~~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~ 156 (440)
.+.+++|++..+.+..+-...+.|...++....... ....+...+...-..+.. ++.+..+++.++ +.|.+-
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~---~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ---NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc---ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 389999998545555666666777666654321100 000111112222233444 665555566666 678888
Q ss_pred ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCc-eeEEecCccCceEEEEeCCCCEEEEEe
Q psy14258 157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTER-FPMVTHKIVYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~-~~l~~~~~~~P~gl~vD~~~~~ly~~d 235 (440)
++........+........+|+..| .|.++.+-... +.|...++..... ..+....-.........+..+.|+-+-
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~D--g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKD--KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCC--CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence 8876544434443445678999988 56666655443 5777777753221 111111111122233333444444332
Q ss_pred ---CCCCcEEEEEccCC-CcEEEecCCccCceeee-eEe--cCEEEEEecCCCeEEEEeccCCCceE
Q psy14258 236 ---TYLDFIDRINYDGT-DRKTIRKGFPVQNLYDI-TVF--ENNLFVTSWRNQSIIRVNKFNSDDYE 295 (440)
Q Consensus 236 ---~~~~~i~~~~~dG~-~~~~i~~~~~~~~p~gl-~~~--~~~ly~td~~~~~i~~~~~~~g~~~~ 295 (440)
...+.|...++... ......... ......+ .++ ++.||.+..+.+.|...+..+++...
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 12345555555322 111111100 1111112 222 23566655456777777776655433
No 197
>KOG1407|consensus
Probab=38.19 E-value=3.3e+02 Score=25.25 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=36.9
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCc
Q psy14258 360 VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANN 412 (440)
Q Consensus 360 ~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~ 412 (440)
-+.+. ..+.+|+..++.|+|..+..-.-.+..-+.+.-.+..-|++|+.++.
T Consensus 152 e~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 152 EISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred eeeec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCce
Confidence 46666 45668888889999998877643333334455567888999998873
No 198
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=37.46 E-value=3.2e+02 Score=24.88 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=40.6
Q ss_pred CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE----CCC-CCeeeEEEecCCCcEEEE
Q psy14258 357 RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID----TGI-YNVEGMAVDWMANNLYWT 416 (440)
Q Consensus 357 ~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~----~~~-~~~~glAvD~~~~~lYwt 416 (440)
.-.||||-|.+++||=-. ..++||.+++....-..+.. .-+ ....|+.|++...+|.+.
T Consensus 28 ~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLG-STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred eEEEEEeecCCCCEEEEe-CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE
Confidence 456999999999999774 57899999998644333311 111 346777777777666666
No 199
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.18 E-value=3.7e+02 Score=25.54 Aligned_cols=61 Identities=10% Similarity=-0.102 Sum_probs=43.3
Q ss_pred cccccce--eeeecCCcEEEe--------ceEEEEecCCceEE-EEEcCCCCCceEEEEcCCCCeEEEEEcC
Q psy14258 132 SLLDGTE--RFPMVTHKIVYP--------EAIYFCTHYMEHCM-IAIDLNLSKPRGIALDPTSGYMFFTKWG 192 (440)
Q Consensus 132 ~~~~p~~--avD~~~~~lY~~--------~~I~~~~~dg~~~~-~~~~~~~~~P~~iavd~~~g~lywtd~~ 192 (440)
...+-.| ++...++.||-| +.|-+.+...+..+ --..+.---|..|.+.|....|-+++.+
T Consensus 48 ~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 48 PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 3445556 788888889988 68999999844433 3333344569999999965588888854
No 200
>KOG0281|consensus
Probab=36.47 E-value=4e+02 Score=25.73 Aligned_cols=148 Identities=8% Similarity=0.023 Sum_probs=80.0
Q ss_pred EEEEeCCCCEEEEEeCCCCcEEEEEccCCCc-EEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceEEEec
Q psy14258 221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIAN 299 (440)
Q Consensus 221 gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~-~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~~~~~ 299 (440)
-|.++ ...++.++-+....|..-+.....+ .++... .....++.+.++. .+|-...++|..-+..+....+...-
T Consensus 240 VLCLq-yd~rviisGSSDsTvrvWDv~tge~l~tlihH--ceaVLhlrf~ng~-mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 240 VLCLQ-YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH--CEAVLHLRFSNGY-MVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred EEeee-ccceEEEecCCCceEEEEeccCCchhhHHhhh--cceeEEEEEeCCE-EEEecCCceeEEEeccCchHHHHHHH
Confidence 35666 4456777766666777776654332 332221 2345566666654 34555555555445443322211000
Q ss_pred -CCCCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCC
Q psy14258 300 -FSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY 378 (440)
Q Consensus 300 -~~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~ 378 (440)
..+-.++.++. =+.-++++.++...|...+++.. +....+.+ .-+|||.-...+++.++....+
T Consensus 316 LvGHrAaVNvVd---------fd~kyIVsASgDRTikvW~~st~----efvRtl~g--HkRGIAClQYr~rlvVSGSSDn 380 (499)
T KOG0281|consen 316 LVGHRAAVNVVD---------FDDKYIVSASGDRTIKVWSTSTC----EFVRTLNG--HKRGIACLQYRDRLVVSGSSDN 380 (499)
T ss_pred Hhhhhhheeeec---------cccceEEEecCCceEEEEeccce----eeehhhhc--ccccceehhccCeEEEecCCCc
Confidence 00111111110 02225555555678888887666 33334443 3467887777889999999999
Q ss_pred eEEEEecCC
Q psy14258 379 VIERRKMFG 387 (440)
Q Consensus 379 ~I~r~~~~g 387 (440)
+|+-.+...
T Consensus 381 tIRlwdi~~ 389 (499)
T KOG0281|consen 381 TIRLWDIEC 389 (499)
T ss_pred eEEEEeccc
Confidence 998887764
No 201
>KOG4328|consensus
Probab=35.61 E-value=4.7e+02 Score=26.24 Aligned_cols=154 Identities=6% Similarity=-0.116 Sum_probs=77.0
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe---ceEEEE--
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP---EAIYFC-- 156 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~---~~I~~~-- 156 (440)
+.+|.|.+.+-.-.++.+..|.|+..++.+.-.+.+..... .-....+ -+-...+.+|+. +...+.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~--------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT--------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCc--------cceeeeeccccCCCccEEEeecccceEEEEe
Confidence 66677776654444444445677666666554333211100 0011111 222345556666 433333
Q ss_pred ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEec-C-ccCceEEEEeCCCCEEEEE
Q psy14258 157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH-K-IVYPYGVTVDFPTKHVYWV 234 (440)
Q Consensus 157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~-~-~~~P~gl~vD~~~~~ly~~ 234 (440)
..+|+....+.... ....+|+++|.+-+++.|-.-....+|+=+.-=+..+..++.. . -...+...+.|.+++| .+
T Consensus 309 R~~~s~~~~~~lh~-kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl-~T 386 (498)
T KOG4328|consen 309 RTDGSEYENLRLHK-KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL-LT 386 (498)
T ss_pred ecCCccchhhhhhh-cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce-Ee
Confidence 34454333222212 3789999999998888876544323455433222222213322 1 1224556677778884 45
Q ss_pred eCCCCcEEEEEc
Q psy14258 235 DTYLDFIDRINY 246 (440)
Q Consensus 235 d~~~~~i~~~~~ 246 (440)
....+.|...+.
T Consensus 387 T~~D~~IRv~ds 398 (498)
T KOG4328|consen 387 TCQDNEIRVFDS 398 (498)
T ss_pred eccCCceEEeec
Confidence 455666766653
No 202
>KOG0640|consensus
Probab=35.58 E-value=2.3e+02 Score=26.87 Aligned_cols=103 Identities=14% Similarity=0.232 Sum_probs=59.9
Q ss_pred CceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC--
Q psy14258 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG-- 397 (440)
Q Consensus 320 ~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~-- 397 (440)
|...++.+-++.++|..+++... +.......+......+.|.|+|.+++|.+.. .-..+.-.+.+.. +-+++..
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dHp~~rlYdv~T~--QcfvsanPd 257 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DHPTLRLYDVNTY--QCFVSANPD 257 (430)
T ss_pred chhheEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEec-CCCceeEEeccce--eEeeecCcc
Confidence 44556666677788888887665 2222233333444556899999888877653 2233333444432 2222211
Q ss_pred ---CCCeeeEEEecCCCcEEEEeCCCCeEEEEE
Q psy14258 398 ---IYNVEGMAVDWMANNLYWTDAGIGTINVAK 427 (440)
Q Consensus 398 ---~~~~~glAvD~~~~~lYwtd~~~~~I~~~~ 427 (440)
-+.+.-+-+.. +++||+|-+..+.|...+
T Consensus 258 ~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 258 DQHTGAITQVRYSS-TGSLYVTASKDGAIKLWD 289 (430)
T ss_pred cccccceeEEEecC-CccEEEEeccCCcEEeec
Confidence 12344455653 678999988888887654
No 203
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.46 E-value=3.9e+02 Score=25.32 Aligned_cols=40 Identities=8% Similarity=0.115 Sum_probs=23.8
Q ss_pred ceEEEEecCCceEEEEEcCCCC-------CceEEEEcCCCCeEEEEE
Q psy14258 151 EAIYFCTHYMEHCMIAIDLNLS-------KPRGIALDPTSGYMFFTK 190 (440)
Q Consensus 151 ~~I~~~~~dg~~~~~~~~~~~~-------~P~~iavd~~~g~lywtd 190 (440)
..|...+.+....+.+-..+.. ....|..||.+..|+.+-
T Consensus 78 SHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR 124 (339)
T PF09910_consen 78 SHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLAR 124 (339)
T ss_pred ceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEe
Confidence 5677777666666666554443 344666666655555543
No 204
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=34.95 E-value=1.2e+02 Score=19.39 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=20.0
Q ss_pred CcEEEEeCCCCeEEEEEeC-CCeeeEEe
Q psy14258 411 NNLYWTDAGIGTINVAKIS-DFSIRKVL 437 (440)
Q Consensus 411 ~~lYwtd~~~~~I~~~~~~-g~~~~~~l 437 (440)
..|.||+. .++|.++++. +...++||
T Consensus 16 DLL~~~E~-~g~vhi~D~R~~f~~~QVi 42 (43)
T PF10313_consen 16 DLLAWAEH-QGRVHIVDTRSNFMRRQVI 42 (43)
T ss_pred cEEEEEcc-CCeEEEEEcccCccceEee
Confidence 48899975 6789999998 65556665
No 205
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.52 E-value=3.6e+02 Score=26.66 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=54.6
Q ss_pred eecCCcEEEeceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEc----CCCCCcEEEEeCCCCCceeEEecC-
Q psy14258 141 PMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKW----GATRPMLERSLLDGTERFPMVTHK- 215 (440)
Q Consensus 141 D~~~~~lY~~~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~----~~~~~~I~r~~~dG~~~~~l~~~~- 215 (440)
||-++++=....+...+.+++..-.+ ....|.++++.+....+.++.. ....+-|.+.+.+|+..+.+....
T Consensus 110 ~~~~g~v~~~~~~~L~Dp~~k~pf~i---~~~~~~~ralt~~d~~~~s~~~~~igdefgP~l~~f~~~Gk~~~~~~~~~~ 186 (391)
T COG4222 110 DFGNGKVTPLDTTFLSDPNKKTPFPI---TGEDPEGRALTPADFDVESSQGAWIGDEFGPYLLEFDANGKLVRVLEVPVR 186 (391)
T ss_pred ccCCcceEEeEEEEeecCCCCCCccc---cccCchhhcccCCCcceeeccccccccccCcceEEECCCCccccccccccc
Confidence 34444333335555556664443333 3356788888886666666654 122478999999988766553210
Q ss_pred ---------c---cCceEEEEeCCCCEEEEEe
Q psy14258 216 ---------I---VYPYGVTVDFPTKHVYWVD 235 (440)
Q Consensus 216 ---------~---~~P~gl~vD~~~~~ly~~d 235 (440)
+ .--.||++.+...+||-+-
T Consensus 187 ~~~~~~p~g~~~n~gfEglait~d~~~L~~~l 218 (391)
T COG4222 187 FLPPDNPKGLRNNLGFEGLAITPDGKKLYALL 218 (391)
T ss_pred cCcCCCccccccccceeeEEecCCCceEEEEE
Confidence 1 1235788888788888653
No 206
>KOG2048|consensus
Probab=34.43 E-value=5.8e+02 Score=26.93 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=64.2
Q ss_pred eeEEeecCCccEEEEEEcCCCCCCceee-eeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEE----C
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAI-MPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID----T 396 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~----~ 396 (440)
..+.+..-....|+++..++......+. .|.. +.....+.|--..+.++++......+..+.+.+...+.+.. .
T Consensus 395 ~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~-~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~ 473 (691)
T KOG2048|consen 395 NLIAISTVSRTKIYRLQPDPNVKVINVDDVPLA-LLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA 473 (691)
T ss_pred CEEEEeeccceEEEEeccCcceeEEEeccchhh-hccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc
Confidence 3444444434566777665541100000 0111 11344666766677788877666777777777644332221 1
Q ss_pred CCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCe
Q psy14258 397 GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFS 432 (440)
Q Consensus 397 ~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~ 432 (440)
......-|++-+.+.+|-.++ ..+.|.++++.+++
T Consensus 474 ~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 474 KCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLE 508 (691)
T ss_pred CCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccce
Confidence 234567789988888887777 57889999999844
No 207
>PHA02713 hypothetical protein; Provisional
Probab=34.35 E-value=5.6e+02 Score=26.72 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=77.6
Q ss_pred cccccce--eeeecCCcEEEe---------ceEEEEecCCceEEEEEcCCCCCce-EEEEcCCCCeEEEEEcCCC-----
Q psy14258 132 SLLDGTE--RFPMVTHKIVYP---------EAIYFCTHYMEHCMIAIDLNLSKPR-GIALDPTSGYMFFTKWGAT----- 194 (440)
Q Consensus 132 ~~~~p~~--avD~~~~~lY~~---------~~I~~~~~dg~~~~~~~~~~~~~P~-~iavd~~~g~lywtd~~~~----- 194 (440)
.+..|+. ++--.+++||+. ..+++.++....=..+ . .+..|+ +.++-..+|+||..-....
T Consensus 337 ~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~-~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-P-DMPIALSSYGMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-C-CCCcccccccEEEECCEEEEEeCCCcccccc
Confidence 3444443 555578899998 2477777765432222 1 233332 1111123699998743210
Q ss_pred ----------------CCcEEEEeCCCCCceeEEecCcc---CceEEEEeCCCCEEEEEeCCC------CcEEEEEccCC
Q psy14258 195 ----------------RPMLERSLLDGTERFPMVTHKIV---YPYGVTVDFPTKHVYWVDTYL------DFIDRINYDGT 249 (440)
Q Consensus 195 ----------------~~~I~r~~~dG~~~~~l~~~~~~---~P~gl~vD~~~~~ly~~d~~~------~~i~~~~~dG~ 249 (440)
...+++.++.-..= ..+. ++. ...++++ .+++||+.-... ..+++.+....
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~-~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~ 490 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLP-NFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTY 490 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeE-eecC-CCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCC
Confidence 12466666643221 1111 111 1224554 478999984321 24667766642
Q ss_pred CcEEEecCCccCc---eeeeeEecCEEEEEecCCC--eEEEEeccCCC
Q psy14258 250 DRKTIRKGFPVQN---LYDITVFENNLFVTSWRNQ--SIIRVNKFNSD 292 (440)
Q Consensus 250 ~~~~i~~~~~~~~---p~gl~~~~~~ly~td~~~~--~i~~~~~~~g~ 292 (440)
+.-..... ++. -.|+++.++.||..-..++ .+.+.|..+.+
T Consensus 491 ~~W~~~~~--m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 491 NGWELITT--TESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCeeEccc--cCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 23332222 332 3688999999999864333 34444444443
No 208
>smart00284 OLF Olfactomedin-like domains.
Probab=34.14 E-value=3.8e+02 Score=24.75 Aligned_cols=142 Identities=7% Similarity=-0.096 Sum_probs=74.0
Q ss_pred ccEEEEEEcCCCCceeEEeCCCCCcce---eeccccccceeeccccccce-eeeecCCcEEEe-------ceEEEEecCC
Q psy14258 92 EHCMIAIDLNLSKPRGIALDPTSGYMF---FTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-------EAIYFCTHYM 160 (440)
Q Consensus 92 ~~~ly~~d~~~~~I~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-------~~I~~~~~dg 160 (440)
++.||+.-..+..|.+.++........ ..-.-.......-+..+--. |+|..+ |++. +.|.+..+|-
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G--LWvIYat~~~~g~ivvSkLnp 160 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG--LWVIYATEQNAGKIVISKLNP 160 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCc--eEEEEeccCCCCCEEEEeeCc
Confidence 488999888888898988875543211 00000000001111222345 888655 3333 5688888876
Q ss_pred ceEEEEEc--CCCCCc---eEEEEcCCCCeEEEEEcCCC-CCcEEEE-eCCCCCceeEEec----CccCceEEEEeCCCC
Q psy14258 161 EHCMIAID--LNLSKP---RGIALDPTSGYMFFTKWGAT-RPMLERS-LLDGTERFPMVTH----KIVYPYGVTVDFPTK 229 (440)
Q Consensus 161 ~~~~~~~~--~~~~~P---~~iavd~~~g~lywtd~~~~-~~~I~r~-~~dG~~~~~l~~~----~~~~P~gl~vD~~~~ 229 (440)
...++.-. ....++ .+..| =|.||.++.... ..+|.-+ +...+. +.-+.. ....-..|.-.|.++
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~YNP~d~ 236 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDYNPNDR 236 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCc-cceeeeeeccccccceeceeCCCCC
Confidence 55544333 222221 23333 289999985221 2355443 444322 222221 233344578888999
Q ss_pred EEEEEeCCCC
Q psy14258 230 HVYWVDTYLD 239 (440)
Q Consensus 230 ~ly~~d~~~~ 239 (440)
+||.=|.+..
T Consensus 237 ~LY~wdng~~ 246 (255)
T smart00284 237 KLYAWNNGHL 246 (255)
T ss_pred eEEEEeCCeE
Confidence 9998775543
No 209
>KOG0266|consensus
Probab=33.63 E-value=5.1e+02 Score=26.09 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=91.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC--CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLL--DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD 247 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~--dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d 247 (440)
......+++.-| .|....+-... .+|...+. +|...+++. .--...+.+++.+.+ +++.+-...+.|..-+..
T Consensus 202 h~~~v~~~~fs~-d~~~l~s~s~D--~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 202 HTRGVSDVAFSP-DGSYLLSGSDD--KTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cccceeeeEECC-CCcEEEEecCC--ceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEecc
Confidence 345577888888 45544444333 35555555 334444443 334456889999888 666665667778888776
Q ss_pred CCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc--eEEEecCCC--CeEEEEeccCCCCCCCCCc-
Q psy14258 248 GTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD--YETIANFSR--PFAIHIYHRQKQPDALKPS- 321 (440)
Q Consensus 248 G~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~--~~~~~~~~~--p~~~~v~~~~~qp~~~~~~- 321 (440)
+......+.+. .....++++..+ +++++...++.|...+..++.. ...+..... |.....++ |+
T Consensus 277 ~~~~~~~l~~h-s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs---------p~~ 346 (456)
T KOG0266|consen 277 TGECVRKLKGH-SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS---------PNG 346 (456)
T ss_pred CCeEEEeeecc-CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC---------CCC
Confidence 54443333321 334566777665 7777777788888889888874 334444333 34444553 23
Q ss_pred eeEEeecCCccEEEEEEcCCC
Q psy14258 322 TFLLYAKGKPAIIKGLTFKRD 342 (440)
Q Consensus 322 ~~l~~~~~~~~~I~~i~~~~~ 342 (440)
.||+.+.. .+.+...++...
T Consensus 347 ~~ll~~~~-d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 347 KYLLSASL-DRTLKLWDLRSG 366 (456)
T ss_pred cEEEEecC-CCeEEEEEccCC
Confidence 34444433 256666666543
No 210
>KOG2919|consensus
Probab=32.51 E-value=4.6e+02 Score=25.17 Aligned_cols=146 Identities=15% Similarity=0.070 Sum_probs=76.6
Q ss_pred EEEEecCCCeEEEEeccCCCceEEEecCC------CCeEEEEeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCc
Q psy14258 273 LFVTSWRNQSIIRVNKFNSDDYETIANFS------RPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE 346 (440)
Q Consensus 273 ly~td~~~~~i~~~~~~~g~~~~~~~~~~------~p~~~~v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~ 346 (440)
++.+.....-|...+.++|+......... ....+.+. |++.-++|- ..++|+.+++...+...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs----------~DGeqlfaG-ykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS----------PDGEQLFAG-YKRCIRVFDTSRPGRDC 193 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec----------CCCCeEeec-ccceEEEeeccCCCCCC
Confidence 33344455667777888877655332111 12333333 343333332 23789888886653322
Q ss_pred eeeeeecC-----CCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCC
Q psy14258 347 QAIMPITD-----LKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIG 421 (440)
Q Consensus 347 ~~~~~~~~-----~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~ 421 (440)
++...+.. ..-...+++.|.+-.+|-.-...+++--..-++...-.+....-+++.-|..-..+.+||.--....
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence 22111111 1123457777777666655545555444444443222222233467777888777888887766666
Q ss_pred eEEEEEeC
Q psy14258 422 TINVAKIS 429 (440)
Q Consensus 422 ~I~~~~~~ 429 (440)
.|..-++.
T Consensus 274 kIl~WDiR 281 (406)
T KOG2919|consen 274 KILCWDIR 281 (406)
T ss_pred eEEEEeeh
Confidence 77766654
No 211
>KOG0645|consensus
Probab=31.11 E-value=4.4e+02 Score=24.58 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=98.6
Q ss_pred CceEEEEeCCCCEEEEEeCCCCcEEEEEccCCC---cEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc
Q psy14258 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTD---RKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 218 ~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~---~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~ 293 (440)
+...++..|..++++-+-.....|...+..+.+ .++++.+..-+....+|.... ++..+-.....+....+ .+.+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k-~~~e 94 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK-EDGE 94 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec-CCCc
Confidence 456677776656665554444455555544321 122222222344566666432 32233333333333333 3333
Q ss_pred eEEEecCC-CCeEEE--EeccCCCCCCCCCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEE
Q psy14258 294 YETIANFS-RPFAIH--IYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYI 370 (440)
Q Consensus 294 ~~~~~~~~-~p~~~~--v~~~~~qp~~~~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~v 370 (440)
.+.+..++ +-..++ .+ .+++.++-+-++...|.....+..+..+-..+.-...+....+.++|-++ |
T Consensus 95 fecv~~lEGHEnEVK~Vaw---------s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-l 164 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAW---------SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-L 164 (312)
T ss_pred eeEEeeeeccccceeEEEE---------cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-e
Confidence 33333332 112222 22 24566777777777888777774422322223333455667899999776 6
Q ss_pred EEEECCCCeEEEEecC-CCCeEEEEE--CCCCCeeeEEEecCCCcEEEEe
Q psy14258 371 YYAELTSYVIERRKMF-GRGKEVVID--TGIYNVEGMAVDWMANNLYWTD 417 (440)
Q Consensus 371 y~~d~~~~~I~r~~~~-g~~~~~~~~--~~~~~~~glAvD~~~~~lYwtd 417 (440)
.++-...++|....-+ +..=+.+.. ..-+.+-.++||..+.+|--++
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 6777788887766654 433222222 2223788999998886666554
No 212
>KOG0275|consensus
Probab=31.06 E-value=4.7e+02 Score=24.92 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC----CceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEE
Q psy14258 319 KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK----RPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVI 394 (440)
Q Consensus 319 ~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~----~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~ 394 (440)
+|+.+++--.+ +.|+.+++.|- +...+.... .-..-...|.+..+|-.- ..+.+|.++.-....|..+
T Consensus 404 npeh~iVCNrs--ntv~imn~qGQ-----vVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 404 NPEHFIVCNRS--NTVYIMNMQGQ-----VVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred CCceEEEEcCC--CeEEEEeccce-----EEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeee
Confidence 34555555444 78888888776 222222111 112344668888887664 5678888887666666665
Q ss_pred ECCCCCeeeEEEecCCCcEEEE
Q psy14258 395 DTGIYNVEGMAVDWMANNLYWT 416 (440)
Q Consensus 395 ~~~~~~~~glAvD~~~~~lYwt 416 (440)
...-..|.|||-.+ ..||--+
T Consensus 476 ~VhEkdvIGl~HHP-HqNllAs 496 (508)
T KOG0275|consen 476 PVHEKDVIGLTHHP-HQNLLAS 496 (508)
T ss_pred ecccccccccccCc-ccchhhh
Confidence 54445688888765 4444433
No 213
>KOG0289|consensus
Probab=30.41 E-value=5.6e+02 Score=25.58 Aligned_cols=190 Identities=8% Similarity=-0.059 Sum_probs=98.9
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceEEEEe
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAIYFCT 157 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I~~~~ 157 (440)
+.++..++.+.++.|++.+..-++.-.-.|..+...... .+++ .... ++-+.+ +||-+ +.+...+
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------~s~v-~~ts~~fHpDg-Lifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--------TSDV-EYTSAAFHPDG-LIFGTGTPDGVVKIWD 375 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec--------cccc-eeEEeeEcCCc-eEEeccCCCceEEEEE
Confidence 789999999999998887644333222222221111000 0111 2344 665544 47777 5566666
Q ss_pred cCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCC-CceeEEecCccCceEEEEeCCCCEEEEEeC
Q psy14258 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT-ERFPMVTHKIVYPYGVTVDFPTKHVYWVDT 236 (440)
Q Consensus 158 ~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~-~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~ 236 (440)
+.......-+...-...+.|++.- |||-..+.... +.|...++--. +.+++......-.+.+.+|..+..|-.+ .
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsE-NGY~Lat~add--~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g 451 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSE-NGYWLATAADD--GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-G 451 (506)
T ss_pred cCCccccccCCCCCCceeEEEecc-CceEEEEEecC--CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-c
Confidence 655432222223345677888864 78766665554 45777776422 3333333333346789999776666555 2
Q ss_pred CCCcEEEEEccCCCcEEEec-CCccCceeeeeEecCEEEEEecCCCeEEEE
Q psy14258 237 YLDFIDRINYDGTDRKTIRK-GFPVQNLYDITVFENNLFVTSWRNQSIIRV 286 (440)
Q Consensus 237 ~~~~i~~~~~dG~~~~~i~~-~~~~~~p~gl~~~~~~ly~td~~~~~i~~~ 286 (440)
..=.|+.+.-...+-+.+.. ........++.+-+...|..+.+.+++.++
T Consensus 452 ~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 452 SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 22244444433322222222 111223345565566777777666666544
No 214
>KOG0649|consensus
Probab=28.84 E-value=4.6e+02 Score=24.09 Aligned_cols=82 Identities=5% Similarity=0.039 Sum_probs=52.4
Q ss_pred CccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCCCcEEEecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCc
Q psy14258 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 215 ~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~~~~~i~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~ 293 (440)
.+...|+|-+||.++-|+++- +...++.+++..+..+-...+. ..+...++..+. -=..+-...+.+..-+..+++.
T Consensus 113 evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred cCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCC-cceeeeeeecccCcceeecCCCccEEEEeccccce
Confidence 355678999999999999986 7789999998655555444442 344455554221 1122334456666666667777
Q ss_pred eEEEe
Q psy14258 294 YETIA 298 (440)
Q Consensus 294 ~~~~~ 298 (440)
..++.
T Consensus 191 v~~ie 195 (325)
T KOG0649|consen 191 VSMIE 195 (325)
T ss_pred eEEec
Confidence 76654
No 215
>KOG1407|consensus
Probab=28.51 E-value=4.9e+02 Score=24.22 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=53.7
Q ss_pred EEeecCCccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECC-CCCee
Q psy14258 324 LLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTG-IYNVE 402 (440)
Q Consensus 324 l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~-~~~~~ 402 (440)
++.+.+....|+++++-.. ..+..+..-..-.-+.+.|.++++-+.+ ....|.-++..... .+-... .-...
T Consensus 79 ~~atas~dk~ir~wd~r~~----k~~~~i~~~~eni~i~wsp~g~~~~~~~-kdD~it~id~r~~~--~~~~~~~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSG----KCTARIETKGENINITWSPDGEYIAVGN-KDDRITFIDARTYK--IVNEEQFKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccC----cEEEEeeccCcceEEEEcCCCCEEEEec-CcccEEEEEecccc--eeehhcccceee
Confidence 3444344466777776444 2222222222233466777777666554 34455555444321 111111 12345
Q ss_pred eEEEecCCCcEEEEeCCCCeEEEEEeC
Q psy14258 403 GMAVDWMANNLYWTDAGIGTINVAKIS 429 (440)
Q Consensus 403 glAvD~~~~~lYwtd~~~~~I~~~~~~ 429 (440)
-++.. ..++||+...|.++|++.+.-
T Consensus 152 e~~w~-~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 152 EISWN-NSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred eeeec-CCCCEEEEecCCceEEEEecc
Confidence 56665 788999999999999999754
No 216
>PHA02713 hypothetical protein; Provisional
Probab=28.33 E-value=7e+02 Score=25.99 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=35.7
Q ss_pred CCEEEEEECC------CCeEEEEecCCCCeEEEEECCCC---CeeeEEEecCCCcEEEEeCCC--CeEEEEEeCC
Q psy14258 367 EEYIYYAELT------SYVIERRKMFGRGKEVVIDTGIY---NVEGMAVDWMANNLYWTDAGI--GTINVAKISD 430 (440)
Q Consensus 367 ~~~vy~~d~~------~~~I~r~~~~g~~~~~~~~~~~~---~~~glAvD~~~~~lYwtd~~~--~~I~~~~~~g 430 (440)
+++||+.-.. ...+++.++...++-+.+. .+. .--|+|+ .++.||.+-... ..+|++++..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence 5789998532 1357888888522222222 121 1244554 478999995333 3788887764
No 217
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=28.29 E-value=5.5e+02 Score=24.74 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=46.7
Q ss_pred EEEEE-cCCCEEEEEECC--CCeEEEEecCCCCeEEEEECCCCCe-eeEEEecCCCcEEEEeCC----CCeEEEEEeC-C
Q psy14258 360 VIDYH-EKEEYIYYAELT--SYVIERRKMFGRGKEVVIDTGIYNV-EGMAVDWMANNLYWTDAG----IGTINVAKIS-D 430 (440)
Q Consensus 360 ~l~~d-~~~~~vy~~d~~--~~~I~r~~~~g~~~~~~~~~~~~~~-~glAvD~~~~~lYwtd~~----~~~I~~~~~~-g 430 (440)
...+- +.++.++|.... -..|+.++.+|.....+.. |--.+ +-+++|..++.||++-.. ...|.+++++ |
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 44443 455556666433 4579999999876554433 43445 458899999999999654 5689999999 6
No 218
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=28.21 E-value=54 Score=21.55 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEcC
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWG 192 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~ 192 (440)
.-.-|.+|.+|+..|.|-|+-..
T Consensus 9 ~~~LP~gLs~d~~tG~isGtp~~ 31 (49)
T PF05345_consen 9 GGGLPSGLSLDPSTGTISGTPTS 31 (49)
T ss_pred CCCCCCcEEEeCCCCEEEeecCC
Confidence 34679999999999999998544
No 219
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=27.69 E-value=1.3e+02 Score=17.16 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=17.5
Q ss_pred EecCEEEEEecCCCeEEEEeccCCCc
Q psy14258 268 VFENNLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 268 ~~~~~ly~td~~~~~i~~~~~~~g~~ 293 (440)
..++.+|+... ++.++.++..+|+.
T Consensus 4 ~~~~~v~~~~~-~g~l~a~d~~~G~~ 28 (33)
T smart00564 4 LSDGTVYVGST-DGTLYALDAKTGEI 28 (33)
T ss_pred EECCEEEEEcC-CCEEEEEEcccCcE
Confidence 34557888764 68888888877654
No 220
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.57 E-value=8.8e+02 Score=26.92 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=54.9
Q ss_pred cCCcEEEe---ceEEEEecCCceEEEE-EcCCCCCceEEEEcCCCCeEEE-EEcCC--CCCcEEEEeCCC--CCceeEEe
Q psy14258 143 VTHKIVYP---EAIYFCTHYMEHCMIA-IDLNLSKPRGIALDPTSGYMFF-TKWGA--TRPMLERSLLDG--TERFPMVT 213 (440)
Q Consensus 143 ~~~~lY~~---~~I~~~~~dg~~~~~~-~~~~~~~P~~iavd~~~g~lyw-td~~~--~~~~I~r~~~dG--~~~~~l~~ 213 (440)
.++..|+. +++..++.||.+.+++ +... .....-++.|...+|=+ +.... ..+.|++.+++. +....|--
T Consensus 318 ~tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~-~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 318 KAKLAFRNDVTGNLAYIDYTKGASRAVEIEDT-ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eeeEEEEEcCCCeEEEEecCCCCceEEEecCC-CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 35556766 5899999999887766 4422 11222235555555555 54433 236799999874 44344433
Q ss_pred cCccCceEEEEeCCCC--EEEEEeCCCCc
Q psy14258 214 HKIVYPYGVTVDFPTK--HVYWVDTYLDF 240 (440)
Q Consensus 214 ~~~~~P~gl~vD~~~~--~ly~~d~~~~~ 240 (440)
++..-|.--.+. .++ -+|++|.++++
T Consensus 397 e~aaiprwrv~e-~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 397 ENAAIPRWRVLE-NGDTVIVYVSDASNNK 424 (912)
T ss_pred ccccccceEecC-CCCeEEEEEcCCCCCc
Confidence 344445444443 233 46888887663
No 221
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=27.09 E-value=1.2e+02 Score=18.31 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=16.3
Q ss_pred CEEEEEecCCCeEEEEeccCCCce
Q psy14258 271 NNLFVTSWRNQSIIRVNKFNSDDY 294 (440)
Q Consensus 271 ~~ly~td~~~~~i~~~~~~~g~~~ 294 (440)
+.+|+. ..++.|+.+|..+|+..
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEE
Confidence 356777 56788888888777654
No 222
>KOG0918|consensus
Probab=26.83 E-value=3e+02 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.3
Q ss_pred eeeeEecCEEEEEecCCCeEEEEeccCCCc
Q psy14258 264 YDITVFENNLFVTSWRNQSIIRVNKFNSDD 293 (440)
Q Consensus 264 ~gl~~~~~~ly~td~~~~~i~~~~~~~g~~ 293 (440)
+=|+.+..+||++.|-.+-|++.|...-..
T Consensus 317 ilISmDDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 317 ILISLDDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred eEEeecCcEEEEEeeeecceeeeccCCCCC
Confidence 346677889999999999998888655443
No 223
>KOG2110|consensus
Probab=26.78 E-value=6e+02 Score=24.75 Aligned_cols=118 Identities=8% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCCeEEEEeccCCCCCCCCCceeEEeecCC-ccEEEEEEcCCCCCCceeeeeecCCCCceEEEEEcCCCEEEEEECCCCe
Q psy14258 301 SRPFAIHIYHRQKQPDALKPSTFLLYAKGK-PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379 (440)
Q Consensus 301 ~~p~~~~v~~~~~qp~~~~~~~~l~~~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~ 379 (440)
++|.|+..+.+.. .+.||-|.++. .+.|...+...- .+ ...+. ..-....+|||++.+. +.=+-...|+
T Consensus 127 ~n~~gl~AlS~n~------~n~ylAyp~s~t~GdV~l~d~~nl-~~-v~~I~-aH~~~lAalafs~~G~-llATASeKGT 196 (391)
T KOG2110|consen 127 PNPKGLCALSPNN------ANCYLAYPGSTTSGDVVLFDTINL-QP-VNTIN-AHKGPLAALAFSPDGT-LLATASEKGT 196 (391)
T ss_pred CCccceEeeccCC------CCceEEecCCCCCceEEEEEcccc-ee-eeEEE-ecCCceeEEEECCCCC-EEEEeccCce
Confidence 4677877774333 23466665543 466766665544 11 11122 2223455899999755 5455566788
Q ss_pred EEEEecCCCCeEEEEE--CCC--CCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 380 IERRKMFGRGKEVVID--TGI--YNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 380 I~r~~~~g~~~~~~~~--~~~--~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
|-|+..-.++. .+.+ .|. -....|+++..+..|=. .+.+.+|++++|+-
T Consensus 197 VIRVf~v~~G~-kl~eFRRG~~~~~IySL~Fs~ds~~L~~-sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 197 VIRVFSVPEGQ-KLYEFRRGTYPVSIYSLSFSPDSQFLAA-SSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEEcCCcc-EeeeeeCCceeeEEEEEEECCCCCeEEE-ecCCCeEEEEEecc
Confidence 87776543222 2222 221 24677999987774443 45689999999974
No 224
>KOG4328|consensus
Probab=26.73 E-value=6.7e+02 Score=25.22 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=79.3
Q ss_pred cceEEEEEeeeccc-EEEEEEcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe----ceE
Q psy14258 80 AQEAIYFCTHYMEH-CMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP----EAI 153 (440)
Q Consensus 80 ~~~~~~i~~d~~~~-~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~----~~I 153 (440)
..++.+++|+|.+. ++..+-...|.|.-.++++...+. ..+. +..|.+ .| ++ |++. .+|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------d~v~----~f~~hs~~V---s~-l~F~P~n~s~i 250 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------DGVY----LFTPHSGPV---SG-LKFSPANTSQI 250 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------CceE----EeccCCccc---cc-eEecCCChhhe
Confidence 34599999999888 666665556777666665222111 1111 223443 32 33 5555 566
Q ss_pred EEEecCCceEEEEEc---------C--CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEE
Q psy14258 154 YFCTHYMEHCMIAID---------L--NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGV 222 (440)
Q Consensus 154 ~~~~~dg~~~~~~~~---------~--~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl 222 (440)
...+.||+.+-+-+. . .-..-.++-+...++.+++.+.-.. -.+.-..++|+....+.... ....++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~-f~~iD~R~~~s~~~~~~lh~-kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGN-FNVIDLRTDGSEYENLRLHK-KKITSV 328 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccc-eEEEEeecCCccchhhhhhh-ccccee
Confidence 666666665533222 1 1122445556666676666654322 35666677787655443322 266789
Q ss_pred EEeCCCCEEEEEeCCCC
Q psy14258 223 TVDFPTKHVYWVDTYLD 239 (440)
Q Consensus 223 ~vD~~~~~ly~~d~~~~ 239 (440)
++.|....++.+-...+
T Consensus 329 ~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQ 345 (498)
T ss_pred ecCCCCchheeecccCc
Confidence 99888777766654444
No 225
>KOG0645|consensus
Probab=25.43 E-value=5.6e+02 Score=23.93 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=102.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeE---EecC-ccCceEEEEeCCCCEEEEEeCCCCcEEEEE
Q psy14258 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPM---VTHK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRIN 245 (440)
Q Consensus 170 ~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l---~~~~-~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~ 245 (440)
..++...+|..|..|.++.|-... ..|...+..+...-.. +... -.....+|..|.++ |.+-...+....+-
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~D--k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTD--KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVIW 88 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCC--ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEEe
Confidence 445678999999778888877554 3555555554222111 1111 22355677765665 44433344333333
Q ss_pred ccC-CCcEEE--ecCCccCceeeeeEecC-EEEEEecCCCeEEEEeccCCCceEEEecCC-CCeE--EEEeccCCCCCCC
Q psy14258 246 YDG-TDRKTI--RKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVNKFNSDDYETIANFS-RPFA--IHIYHRQKQPDAL 318 (440)
Q Consensus 246 ~dG-~~~~~i--~~~~~~~~p~gl~~~~~-~ly~td~~~~~i~~~~~~~g~~~~~~~~~~-~p~~--~~v~~~~~qp~~~ 318 (440)
-++ ...+.+ ++| .-+...+++...+ ++.-|-....+|+......+.+.+.++-+. +..+ ..+.||
T Consensus 89 ~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP------- 160 (312)
T KOG0645|consen 89 KKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP------- 160 (312)
T ss_pred ecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-------
Confidence 322 222222 223 1345678887765 566666667788777766666666544333 2223 335563
Q ss_pred CCceeEEeecCCccEEEEEEcCCCCCCceeeeeecCCC-CceEEEEEcCCCEEEEEE-CCCCeEEE
Q psy14258 319 KPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK-RPSVIDYHEKEEYIYYAE-LTSYVIER 382 (440)
Q Consensus 319 ~~~~~l~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~-~p~~l~~d~~~~~vy~~d-~~~~~I~r 382 (440)
..-|+++-+..+.|....-...+.- +....+.+-. ..-+++||+.+.+|-=++ -..-+|+|
T Consensus 161 --t~dlL~S~SYDnTIk~~~~~~dddW-~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 161 --TEDLLFSCSYDNTIKVYRDEDDDDW-ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred --CcceeEEeccCCeEEEEeecCCCCe-eEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 3346666666667765554422111 1222222222 334788888776654332 23334444
No 226
>KOG0650|consensus
Probab=24.30 E-value=8.4e+02 Score=25.57 Aligned_cols=71 Identities=11% Similarity=0.095 Sum_probs=50.1
Q ss_pred CCceEEEEEcCCCEEEEEECCCCeEEEEecCCCC-eEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCC
Q psy14258 356 KRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISD 430 (440)
Q Consensus 356 ~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~-~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g 430 (440)
..|..+.|+|..-++++|.. +.|.-.++---. .+.+ ..+.-..+.||+++-|.||..... .+++-+++++=
T Consensus 567 G~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL-~tg~kwiS~msihp~GDnli~gs~-d~k~~WfDldl 638 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKL-LTGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLDL 638 (733)
T ss_pred CceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHH-hcCCeeeeeeeecCCCCeEEEecC-CCeeEEEEccc
Confidence 35778999999999999964 445445543211 1111 246667899999999999988865 45788998875
No 227
>KOG0308|consensus
Probab=23.51 E-value=8.9e+02 Score=25.60 Aligned_cols=191 Identities=11% Similarity=0.012 Sum_probs=94.6
Q ss_pred EEEEEeeecccEEEEEEcCCCCceeEEeCCCCCcceeecccccccee-eccccccce-eeeecCCcEEEe----ceEEEE
Q psy14258 83 AIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPML-ERSLLDGTE-RFPMVTHKIVYP----EAIYFC 156 (440)
Q Consensus 83 ~~~i~~d~~~~~ly~~d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~p~~-avD~~~~~lY~~----~~I~~~ 156 (440)
+..++|-...+.++.+-.-.++|+..+++....+.+.+....+.-.+ ........+ |.. .++.++++ .-+...
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceEEe
Confidence 67777766667777777767778777776432211111110000000 011222222 322 12235665 334555
Q ss_pred ecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCce--eEEecCccCceEEEEeCCCCEEEEE
Q psy14258 157 THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERF--PMVTHKIVYPYGVTVDFPTKHVYWV 234 (440)
Q Consensus 157 ~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~--~l~~~~~~~P~gl~vD~~~~~ly~~ 234 (440)
+.-...+..=+.+.-.+.+.|.++....++.=+... +.|..-++.-..-. -++.... ...|..++.-..+|..
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSD---gtIrlWdLgqQrCl~T~~vH~e~--VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSD---GTIRLWDLGQQRCLATYIVHKEG--VWALQSSPSFTHVYSG 273 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCCeEeecCCC---ceEEeeeccccceeeeEEeccCc--eEEEeeCCCcceEEec
Confidence 554433332223455788888888854344333222 45666555322111 1112222 4577777777888887
Q ss_pred eCCCCcEEEEEccC-CCcEEEecCCccCce-eeeeEe--cCEEEEEecCCCeEE
Q psy14258 235 DTYLDFIDRINYDG-TDRKTIRKGFPVQNL-YDITVF--ENNLFVTSWRNQSII 284 (440)
Q Consensus 235 d~~~~~i~~~~~dG-~~~~~i~~~~~~~~p-~gl~~~--~~~ly~td~~~~~i~ 284 (440)
+ ..+.|++.++.. ...+.+... .+| .-+.+. ++.++.+.+ +..|.
T Consensus 274 ~-rd~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTt-ds~I~ 322 (735)
T KOG0308|consen 274 G-RDGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTT-DSSIK 322 (735)
T ss_pred C-CCCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeec-cccce
Confidence 6 456899998866 444445443 234 233333 455644433 44443
No 228
>KOG0973|consensus
Probab=23.19 E-value=4.1e+02 Score=29.41 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEecCCCCeEEEEECCCCCeeeEEEecCCCcEEEEeCCCCeEEEEEeCCCeeeEEe
Q psy14258 360 VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437 (440)
Q Consensus 360 ~l~~d~~~~~vy~~d~~~~~I~r~~~~g~~~~~~~~~~~~~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~~~~~~l 437 (440)
.+.++| ++.+.++=.-.++|-..+........++......+.|+++|++++ -+-+.++.++|.+.+..--+..+.|
T Consensus 134 Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 134 DVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred eeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEee
No 229
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=23.19 E-value=2.4e+02 Score=21.05 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=22.3
Q ss_pred CeeeEEEecCCCcEEEEeCCCCeEEEEEeCCC
Q psy14258 400 NVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431 (440)
Q Consensus 400 ~~~glAvD~~~~~lYwtd~~~~~I~~~~~~g~ 431 (440)
....--.|..++.+|==|+.++.||+++-+|+
T Consensus 30 ~~r~rw~~~kG~kiYewDsqHG~lEvy~~~Gk 61 (85)
T PF09000_consen 30 GKRKRWKDKKGRKIYEWDSQHGELEVYNKRGK 61 (85)
T ss_dssp SB--EEEETTTTEEEEEETTTTEEEEEETT-B
T ss_pred ccccceEcCCCCEEEEEcCCCCeEEEEcCCCc
Confidence 34444566666678888999999999998884
No 230
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=21.90 E-value=3.2e+02 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.3
Q ss_pred EEEcCCCEEEEEECCCCeEEEEecCCC
Q psy14258 362 DYHEKEEYIYYAELTSYVIERRKMFGR 388 (440)
Q Consensus 362 ~~d~~~~~vy~~d~~~~~I~r~~~~g~ 388 (440)
=||++.+.||++..+.++|+-..+...
T Consensus 17 ~yD~dt~llyl~gKGD~~ir~yEv~~~ 43 (136)
T PF08954_consen 17 FYDEDTNLLYLAGKGDGNIRYYEVSDE 43 (136)
T ss_dssp EE-TTT-EEEEEETT-S-EEEEEE-SS
T ss_pred eEcCCCCEEEEEeccCcEEEEEEEcCC
Confidence 379999999999999999999988765
No 231
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=21.08 E-value=7.5e+02 Score=25.95 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=44.8
Q ss_pred eeeecCCCCceEEEEEcCCCEEEEEECCCCeEEEEecCCC---CeEEEEECCCCCeeeEEEe
Q psy14258 349 IMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR---GKEVVIDTGIYNVEGMAVD 407 (440)
Q Consensus 349 ~~~~~~~~~p~~l~~d~~~~~vy~~d~~~~~I~r~~~~g~---~~~~~~~~~~~~~~glAvD 407 (440)
-+.++++--|-=||||+..+.|=+|...-+.|..+.+-.+ +.+.+--+.-..|.||-+=
T Consensus 332 KV~IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFl 393 (671)
T PF15390_consen 332 KVSIPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFL 393 (671)
T ss_pred eeccccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEc
Confidence 4556677778899999999999999999998888877654 2344433455789998874
No 232
>KOG0294|consensus
Probab=21.01 E-value=7.4e+02 Score=23.71 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=84.7
Q ss_pred CCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeC-CCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEccCC
Q psy14258 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLL-DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGT 249 (440)
Q Consensus 171 ~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~-dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~dG~ 249 (440)
-.+..+|++.| .|+|=.+-.+. ..+...++ .|.....+-- -..|.-+..++.+++.++.- .++|....++..
T Consensus 127 ~~~Vt~lsiHP-S~KLALsVg~D--~~lr~WNLV~Gr~a~v~~L--~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A 199 (362)
T KOG0294|consen 127 KGQVTDLSIHP-SGKLALSVGGD--QVLRTWNLVRGRVAFVLNL--KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA 199 (362)
T ss_pred ccccceeEecC-CCceEEEEcCC--ceeeeehhhcCccceeecc--CCcceeeEEcCCCCEEEEEe--ccEEEEEecccH
Confidence 35588999999 78888887665 35555554 4444433321 12355577787777777653 455666655543
Q ss_pred CcEEEecCCccCceeeeeEecCEEEEEecCCCeEEEEeccCCCceE-EEecCCCCeEEEEeccCCCCCCCCCceeEEeec
Q psy14258 250 DRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYE-TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAK 328 (440)
Q Consensus 250 ~~~~i~~~~~~~~p~gl~~~~~~ly~td~~~~~i~~~~~~~g~~~~-~~~~~~~p~~~~v~~~~~qp~~~~~~~~l~~~~ 328 (440)
.+...... -..+.-+...++....+-..+..|...+-.++.... ..+...+..++..|. +|+++++++-
T Consensus 200 ~v~~~i~~--~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~--------~~~~~~lvTa 269 (362)
T KOG0294|consen 200 SVFREIEN--PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT--------NPEHEYLVTA 269 (362)
T ss_pred hHhhhhhc--cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe--------cCCceEEEEe
Confidence 22111111 123344444333333333345556555554443333 223334555666553 4567777777
Q ss_pred CCccEEEEEEcCCC
Q psy14258 329 GKPAIIKGLTFKRD 342 (440)
Q Consensus 329 ~~~~~I~~i~~~~~ 342 (440)
+..+.|...+++..
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 77788877776655
No 233
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=20.42 E-value=1.1e+03 Score=25.67 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=48.4
Q ss_pred eeeecCCcEEEe-ceEEEEecCCceEEEEEcCCCCCceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecC--
Q psy14258 139 RFPMVTHKIVYP-EAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-- 215 (440)
Q Consensus 139 avD~~~~~lY~~-~~I~~~~~dg~~~~~~~~~~~~~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~-- 215 (440)
++|...+.+||- +.- .-+..|..++.. ..+..-.=+|+|+.+|.+=|.-...+ +-++ ++|......|+.-.
T Consensus 381 s~D~~~glvy~ptGn~-~pd~~g~~r~~~--~n~y~~slvALD~~TGk~~W~~Q~~~-hD~W--D~D~~~~p~L~d~~~~ 454 (764)
T TIGR03074 381 SYDEKLGLVYLPMGNQ-TPDQWGGDRTPA--DEKYSSSLVALDATTGKERWVFQTVH-HDLW--DMDVPAQPSLVDLPDA 454 (764)
T ss_pred EEcCCCCeEEEeCCCc-cccccCCccccC--cccccceEEEEeCCCCceEEEecccC-Cccc--cccccCCceEEeeecC
Confidence 999999999986 221 111223332211 12334556899999999999864432 2233 44444333333210
Q ss_pred --ccCceEEEEeCCCCEEEEEeCCCC
Q psy14258 216 --IVYPYGVTVDFPTKHVYWVDTYLD 239 (440)
Q Consensus 216 --~~~P~gl~vD~~~~~ly~~d~~~~ 239 (440)
-..|. +..-..++.+|.-|..++
T Consensus 455 ~G~~~~~-v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 455 DGTTVPA-LVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred CCcEeeE-EEEECCCCEEEEEECCCC
Confidence 01122 222225666676666655
No 234
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=20.24 E-value=1.2e+02 Score=18.35 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=15.3
Q ss_pred CCCCCCcccCCCceEEc-cCCeeee
Q psy14258 21 GSCDQTCTNTHLSYTYT-DEGFSFQ 44 (440)
Q Consensus 21 ~~Cs~~C~n~~~~~~C~-~~g~~l~ 44 (440)
..|-..|-+.. ...|. ++||.+.
T Consensus 6 t~CpA~CDpn~-~~~C~CPeGyIld 29 (34)
T PF09064_consen 6 TECPADCDPNS-PGQCFCPEGYILD 29 (34)
T ss_pred ccCCCccCCCC-CCceeCCCceEec
Confidence 45666774322 23899 9999885
No 235
>KOG0263|consensus
Probab=20.02 E-value=1.1e+03 Score=25.30 Aligned_cols=200 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCceEEc-cCCeeeecceeEEEEee-cccceeeeEEEecCCCceeeeeecccceEEEEEeeecccEEEEE
Q psy14258 21 GSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETI-EAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAI 98 (440)
Q Consensus 21 ~~Cs~~C~n~~~~~~C~-~~g~~l~~~~~ll~s~~-~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~i~~d~~~~~ly~~ 98 (440)
+.|..+|-....=|-|. .+- ..||+-++. .. ++-.+++.....+....+..-+..+.|.|.+ .||+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd-----~rfLlScSED~s-----vRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G--yYFa 509 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPD-----RRFLLSCSEDSS-----VRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG--YYFA 509 (707)
T ss_pred ceeEEeecCCCceeeeeeccc-----ccceeeccCCcc-----eeeeecccceeEEEecCCCcceeeEEecCCc--eEEE
Q ss_pred EcCCCCceeEEeCCCCCcceeeccccccceeeccccccce-eeeecCCcEEEe-----ceEEEEecCCceEEEEEcCCCC
Q psy14258 99 DLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE-RFPMVTHKIVYP-----EAIYFCTHYMEHCMIAIDLNLS 172 (440)
Q Consensus 99 d~~~~~I~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~-avD~~~~~lY~~-----~~I~~~~~dg~~~~~~~~~~~~ 172 (440)
.....+ .+.+-...... +.-++...+..... ++-|.. -|++ .++..=+.-...+..++.+...
T Consensus 510 tas~D~--tArLWs~d~~~-------PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 510 TASHDQ--TARLWSTDHNK-------PLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred ecCCCc--eeeeeecccCC-------chhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCC
Q ss_pred CceEEEEcCCCCeEEEEEcCCCCCcEEEEeCCCCCceeEEecCccCceEEEEeCCCCEEEEEeCCCCcEEEEEcc
Q psy14258 173 KPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYD 247 (440)
Q Consensus 173 ~P~~iavd~~~g~lywtd~~~~~~~I~r~~~dG~~~~~l~~~~~~~P~gl~vD~~~~~ly~~d~~~~~i~~~~~d 247 (440)
...++++.|...+|==.+.. +.|...++.+..........-.....|++. ..+.+..+....+.|..-|+.
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDED---GLIKIWDLANGSLVKQLKGHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ceEEEEEcCCCceEeecccC---CcEEEEEcCCCcchhhhhcccCceeEEEEe-cCCCEEEecCCCCeEEEEEch
Done!