RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14258
(440 letters)
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 200 bits (509), Expect = 4e-58
Identities = 107/400 (26%), Positives = 186/400 (46%), Gaps = 65/400 (16%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPEAI------ 153
L + + G ++++ ++R+ + TE V ++ P+ +
Sbjct: 38 GLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95
Query: 154 ---YFC---THYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER 200
Y+ T+ +E + L +PR IALDP+SG+M++T WG P +ER
Sbjct: 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIER 154
Query: 201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV 260
+ +DG+ RF ++ +I +P G+T+D+ + +YW D L+FI + N DGT+R+ + KG +
Sbjct: 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SL 213
Query: 261 QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALK 319
+ + +T+FE+ L+ T W SI+ NK+ + I + P IH + +Q+QP+A
Sbjct: 214 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 273
Query: 320 P--------STFLLYAKGKPAI----IKGLTFKRDGTT---------------------- 345
P S L + KP G+ +G T
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333
Query: 346 -----EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN 400
++ + D++ IDY E YIY+ + I R + G G + V+ I +
Sbjct: 334 DTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAH 393
Query: 401 VEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
+G+AVDW+A NLYWTD G I V ++ + ++RK+L
Sbjct: 394 PDGIAVDWVARNLYWTDTGTDRIEVTRL-NGTMRKILISE 432
Score = 147 bits (371), Expect = 7e-39
Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 38/335 (11%)
Query: 1 MTFRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEE 60
+ + + +G C C + + Y + +
Sbjct: 260 IHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG--------------VKL 305
Query: 61 CFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDL-NLSKPRGIALDPTSGYMFF 119
++ L L + + I + L ++ I DP GY+++
Sbjct: 306 LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365
Query: 120 TKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI---------YFC---THYME------ 161
T + RS +DG+ +VT +I +P+ I Y+ T +E
Sbjct: 366 TDD--EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423
Query: 162 -HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPY 220
I I +L +PR I LDP GYM++T WG P +ER+ LDG++R +V + +P
Sbjct: 424 TMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSDRVVLVNTSLGWPN 482
Query: 221 GVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN 280
G+ +D+ +YW D D I+ +N DGT R+ + + + +++ T+ + ++ T W+
Sbjct: 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVED-KIPHIFGFTLLGDYVYWTDWQR 541
Query: 281 QSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQP 315
+SI RV+K +++ I + + +
Sbjct: 542 RSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVI 576
Score = 93.0 bits (230), Expect = 2e-20
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER 382
LLYA + + E A + + L+ + +D+ IY+++++ I+R
Sbjct: 11 LLLYANRR-DLRL---VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKR 66
Query: 383 RKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
+ + V+ +G+ + +G+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 67 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLFWQ 124
Score = 88.3 bits (218), Expect = 7e-19
Identities = 53/287 (18%), Positives = 100/287 (34%), Gaps = 61/287 (21%)
Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
I T ++ ++ ++ I DP GY+++T + RS +DG+ +V
Sbjct: 331 ISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDD--EVRAIRRSFIDGSGSQFVV 387
Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FE 270
T +I +P G+ VD+ +++YW DT D I+ +GT RK + ++ I +
Sbjct: 388 TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISE-DLEEPRAIVLDPMV 446
Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
++ T W I + D + N
Sbjct: 447 GYMYWTDWGEIPKIERAALDGSDRVVLVN------------------------------- 475
Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
T L P+ + E IY+ + + IE G G+
Sbjct: 476 ----------------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513
Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVL 437
V+++ I ++ G + + +YWTD +I ++
Sbjct: 514 RVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVII 558
Score = 73.3 bits (179), Expect = 4e-14
Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 52/387 (13%)
Query: 84 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 143
I I I+ + P G+ LD +++ + +S LDGT R +V
Sbjct: 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVV 209
Query: 144 THKIVYPEAI------YFCTHYMEHCMIAIDL-----------NLSKPRGIALDPTSGYM 186
+ +P A+ + T + H ++A + ++ P I
Sbjct: 210 KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP 269
Query: 187 FFTKWGATRPM------LERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDF 240
T L + + K++ D T+ +
Sbjct: 270 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRT--D 327
Query: 241 IDRINYDGTDRKTIRKGFPVQNLY-----DITVFENNLFVTSWRNQSIIRVNKFNSDDYE 295
+ RI+ D D I ++++ D E ++ T ++I R + +
Sbjct: 328 LRRISLDTPDFTDIV--LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF-IDGSGSQ 384
Query: 296 TI--ANFSRPFAIHIYHRQKQPDALKPSTFLLY-AKGKPAIIKGLTFKRDGTTEQAIMPI 352
+ A + P I A+ LY I+ +GT + I+
Sbjct: 385 FVVTAQIAHPDGI----------AVDWVARNLYWTDTGTDRIEVTRL--NGTM-RKILIS 431
Query: 353 TDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN 411
DL+ P I Y+Y+ + IER + G + V+++T + G+A+D+
Sbjct: 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEG 491
Query: 412 NLYWTDAGIGTINVAKISDFSIRKVLY 438
+YW DA I V R ++
Sbjct: 492 KIYWGDAKTDKIEVMNTDGTGRRVLVE 518
Score = 49.8 bits (118), Expect = 1e-06
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 273 LFVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
L + + V+ N + TI A+ + ++
Sbjct: 12 LLYA--NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG---------LIYWSDVS 60
Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
IK F + T + ++ L P + E +Y+ + + IE + G +
Sbjct: 61 EEAIKRTEF--NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118
Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAG 419
+V+ + +A+D + +YWTD G
Sbjct: 119 KVLFWQELDQPRAIALDPSSGFMYWTDWG 147
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 185 bits (471), Expect = 1e-54
Identities = 74/345 (21%), Positives = 128/345 (37%), Gaps = 59/345 (17%)
Query: 3 FRGPNKTQCVDADECLIDGSCDQTCTNTHLSY--------TYTDEGFSFQGVKTHLYETI 54
F+ + +C D DEC +C Q C N Y + + V + Y
Sbjct: 29 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 88
Query: 55 EAFWEECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCM------------------- 95
E +D E+ + L +
Sbjct: 89 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 148
Query: 96 ---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEA 152
I ++ P G+A+D +++T + + G
Sbjct: 149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADTKGV--------------- 191
Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
N SKPR I +DP G+M++T WG T +++ L+G + + +V
Sbjct: 192 ---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 241
Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFEN 271
T I +P G+T+D + +YWVD+ L I I+ +G +RKTI + + + + + VFE+
Sbjct: 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 301
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
+F T N++I N+ D +A N P + ++H QP
Sbjct: 302 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 346
Score = 70.6 bits (172), Expect = 2e-13
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 342 DGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK----EVVIDTG 397
+ I +L+ +D IY+++L+ +I ++ + VI
Sbjct: 98 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157
Query: 398 IYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
I +G+AVDW+ +N+YWTD+ +GT++VA RK L++
Sbjct: 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFR 198
Score = 67.6 bits (164), Expect = 2e-12
Identities = 66/434 (15%), Positives = 126/434 (29%), Gaps = 112/434 (25%)
Query: 15 DECLID-GSCDQTCTNTHLSYTYTDE-GFSFQGVKTHLYETIEAFWEECFGPMDIEEWDE 72
+ECL + G C C + + Y GF + C E+ DE
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------C------EDIDE 42
Query: 73 GLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 132
T +Q + Y C L+ A+ + F + + L+R
Sbjct: 43 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR- 101
Query: 133 LLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWG 192
+ + T + + DL+ LD G
Sbjct: 102 -------SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-------- 146
Query: 193 ATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRK 252
+ +++ I P G+ VD+ ++YW D+ L + + G RK
Sbjct: 147 ------------VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194
Query: 253 TIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQ 312
T+F N S+P AI
Sbjct: 195 --------------TLFRENG---------------------------SKPRAI------ 207
Query: 313 KQPDALKPSTFLLY---AKGKPAIIK-GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEK 366
+ P +Y I K GL +G +++ +++ P+ +D
Sbjct: 208 ----VVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLVT-ENIQWPNGITLDLLSG 258
Query: 367 EEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
+Y+ + + I + G ++ +++ ++ + ++WTD I A
Sbjct: 259 R--LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 316
Query: 427 KISDFSIRKVLYKG 440
S +L +
Sbjct: 317 NRLTGSDVNLLAEN 330
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 183 bits (466), Expect = 5e-54
Identities = 84/342 (24%), Positives = 135/342 (39%), Gaps = 55/342 (16%)
Query: 6 PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDE--------GFSFQGVKTHLYETIEAF 57
+ C D +EC +G C Q CTN+ ++ E S + +
Sbjct: 36 EDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANR 95
Query: 58 WEECFGPMDIEEWDEGLSFLT------------------FAQEAIYFCTHYMEHCMIAID 99
+ E+ L+ L + I + +
Sbjct: 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155
Query: 100 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHY 159
L P G+A+D +++T G +R +E + LDG
Sbjct: 156 TGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGA---------------------- 191
Query: 160 MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYP 219
H + + +L KPR IAL P G +++T WG P +E S +DG+ R + + +P
Sbjct: 192 --HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPRIEASSMDGSGRRIIADTHLFWP 248
Query: 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWR 279
G+T+D+ + +YWVD I+R N DG+ RK + + + + ITVFE++L+ T W
Sbjct: 249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWH 307
Query: 280 NQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKP 320
+SI NKF + E I P IH H Q+QP
Sbjct: 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNR 349
Score = 76.3 bits (187), Expect = 2e-15
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 350 MPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWM 409
+ + +L+ +D+H + E ++++++T I R + G E V+ TG+ + G+AVDW+
Sbjct: 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV 169
Query: 410 ANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
+ LYWTD+G I VA + D + RKVL
Sbjct: 170 HDKLYWTDSGTSRIEVANL-DGAHRKVLLW 198
Score = 60.9 bits (147), Expect = 3e-10
Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 62/285 (21%)
Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
+ C +L + AL P +F + + + R + ++ + +
Sbjct: 63 AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR------SEYTLLLNNLE 116
Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT-IRKGFPVQNLYDITVFENNLFVT 276
+ + V+W D LD I R N +G++ + + G + + L+ T
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176
Query: 277 SWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKG 336
I V + + +
Sbjct: 177 DSGTSRI-EVANLDGAHRKVLLW------------------------------------- 198
Query: 337 LTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVID 395
L++P I H E IY+ + + IE M G G+ ++ D
Sbjct: 199 ----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD 242
Query: 396 TGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
T ++ G+ +D+ +YW DA I A + + V+ +G
Sbjct: 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 186 bits (474), Expect = 4e-53
Identities = 79/402 (19%), Positives = 163/402 (40%), Gaps = 69/402 (17%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI------- 153
+ + + D T +++T + R+ ++G+ +V + YPE +
Sbjct: 35 GVKEASALDFDVTDNRIYWTDIS--LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92
Query: 154 --YFC---THYME-------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS 201
Y+ T+ +E H + + +L PR +ALDP G+M++T+WG +P ++R+
Sbjct: 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRA 151
Query: 202 LLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQ 261
+DG+ER +V + + G+T+D+ + +YW D + I+ N G +R+ I P
Sbjct: 152 AMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHP 210
Query: 262 NLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKP 320
+ +T +++ ++ T W +SI R NK + + I + I ++H +Q +
Sbjct: 211 --FGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNEC 268
Query: 321 ST--------------------------------FLLYAKGKPAIIKGLTFKR----DGT 344
++ + R +
Sbjct: 269 ASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQ 328
Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGI------ 398
+ I+PI L+ IDY ++ +Y+ + +I + + G V+ + +
Sbjct: 329 SPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLE 388
Query: 399 YNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
+++D + +YWT INV ++ D V+ KG
Sbjct: 389 IQPYDLSIDIYSRYIYWTCEATNVINVTRL-DGRSVGVVLKG 429
Score = 136 bits (342), Expect = 7e-35
Identities = 55/343 (16%), Positives = 113/343 (32%), Gaps = 45/343 (13%)
Query: 1 MTFRGPNKTQCVDADECLID-GSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWE 59
M + ++ +EC G C C + + + + +
Sbjct: 252 MDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFL 311
Query: 60 ECFGPMDIEEWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFF 119
I + ++ I +L R I DP +++
Sbjct: 312 LFSQKSAINR--------------MVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYW 356
Query: 120 TKWGATRPMLERSLLDGTERFPMVT--------------------HKIVY-----PEAIY 154
+ + M+ ++ DG++ F +V + +Y I
Sbjct: 357 I--DSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414
Query: 155 FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTH 214
+ + +PR + ++P GYM+FT P +ER+ LDGTER +
Sbjct: 415 VTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFS 474
Query: 215 KIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLF 274
+ P + +D ++W D+ L I+ + G +R + + +TVFEN L+
Sbjct: 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFENWLY 533
Query: 275 VTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPD 316
+ Q I +++ + + ++ IH +
Sbjct: 534 WIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQE 576
Score = 102 bits (256), Expect = 1e-23
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
P FLL+++ I+ ++ + +P+T +K S +D+ + IY+ +++
Sbjct: 5 PEAFLLFSRRA--DIRRISL--ETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60
Query: 380 IERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
I R M G E V++ G+ EGMAVDW+ NLYW D G I V+K+ D R+VL
Sbjct: 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL-DGQHRQVLVW 119
Query: 440 G 440
Sbjct: 120 K 120
Score = 84.1 bits (207), Expect = 1e-17
Identities = 54/367 (14%), Positives = 118/367 (32%), Gaps = 40/367 (10%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK-----IVYPEAIYF 155
N+ + G+ +D +++ ++E S + G R + + + +
Sbjct: 164 NVGRANGLTIDYAKRRLYW--TDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIY 221
Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERS------------LL 203
T + + + + R I M + ++R L
Sbjct: 222 WTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLA 281
Query: 204 DGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL 263
F + + + I+R+ D I P+ +L
Sbjct: 282 VPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDII--LPIHSL 339
Query: 264 -----YDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPD-- 316
D + L+ R I + + T+ S + + + QP
Sbjct: 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQ-EDGSQGFTVVVSS----VPSQNLEIQPYDL 394
Query: 317 ALKPSTFLLY-AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL 375
++ + +Y +I DG + ++ + RP + + ++ Y+Y+ L
Sbjct: 395 SIDIYSRYIYWTCEATNVINVTRL--DGRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNL 451
Query: 376 --TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSI 433
S IER + G +EV+ +G+ +A+D L+W D+ + I + + +
Sbjct: 452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL-SGAN 510
Query: 434 RKVLYKG 440
R VL
Sbjct: 511 RIVLEDS 517
Score = 84.1 bits (207), Expect = 2e-17
Identities = 56/426 (13%), Positives = 126/426 (29%), Gaps = 69/426 (16%)
Query: 21 GSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLTFA 80
S + N + F + ++Y T + + +
Sbjct: 191 ESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDY 250
Query: 81 QEAIYFCTHYMEHCMIAIDLNLSKPRGIALD-PTSGYMFFTKWGATRPMLERSLLDGTER 139
I + + + L P G++ + R+ T
Sbjct: 251 VMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTF 310
Query: 140 FPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLE 199
+ + ++ I +L R I DP +++ + + M+
Sbjct: 311 LLFSQKSAIN--RMVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWI--DSRQNMIR 365
Query: 200 RSLLDGTERFPMVTHKIV------YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT 253
++ DG++ F +V + PY +++D ++++YW + I+ DG
Sbjct: 366 KAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGV 425
Query: 254 IRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHR 311
+ KG + V + ++ T+ + +S ++ +
Sbjct: 426 VLKG-EQDRPRAVVVNPEKGYMYFTNLQERSP-KIERAA--------------------- 462
Query: 312 QKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIY 371
DGT + + + L +P + + ++
Sbjct: 463 -----------------------------LDGTEREVL-FFSGLSKPIALALDSRLGKLF 492
Query: 372 YAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDF 431
+A+ IE + G + V+ D+ I G+ V N LYW D I ++
Sbjct: 493 WADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGR 550
Query: 432 SIRKVL 437
R +
Sbjct: 551 EGRTKV 556
Score = 57.9 bits (139), Expect = 3e-09
Identities = 38/253 (15%), Positives = 73/253 (28%), Gaps = 63/253 (24%)
Query: 193 ATRPMLERSLLDGTERFPMVTHK-IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDR 251
+ R + R L+ + + + D +YW D L I R +G+
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 252 KT-IRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHI 308
+ + G + + V NL+ W + R+ D
Sbjct: 72 EHVVEFG--LDYPEGMAVDWLGKNLY---WADTGTNRIEVSKLD---------------- 110
Query: 309 YHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEE 368
+ ++ DL P + E
Sbjct: 111 -----------------------------------GQHRQVLVWKDLDSPRALALDPAEG 135
Query: 369 YIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAK 427
++Y+ E I+R M G + ++ + G+ +D+ LYWTD I +
Sbjct: 136 FMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194
Query: 428 ISDFSIRKVLYKG 440
+ R+V+
Sbjct: 195 M-LGLNREVIADD 206
Score = 46.3 bits (109), Expect = 2e-05
Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 20/175 (11%)
Query: 270 ENNLFVTSWRNQSIIRVNKFNSDDYET---IANFSRPFAIHIYHRQKQPDALKPSTFLLY 326
E L + R I R++ +++ + A+ + + +
Sbjct: 6 EAFLLFS--RRADIRRIS-LETNNNNVAIPLTGVKEASALDFDVTDNR---------IYW 53
Query: 327 AKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMF 386
I +G+ + ++ L P + + +Y+A+ + IE K+
Sbjct: 54 TDISLKTISRAFM--NGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD 110
Query: 387 GRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGI-GTINVAKISDFSIRKVLYKG 440
G+ ++V++ + + +A+D +YWT+ G I+ A D S R L
Sbjct: 111 GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA-MDGSERTTLVPN 164
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 173 bits (441), Expect = 1e-51
Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 25/238 (10%)
Query: 98 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI---- 153
+ + G+A D +++T P + R+ L G E ++ + PE I
Sbjct: 31 LHIPAKVIIGLAFDCVDKVVYWTDISE--PSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88
Query: 154 -----YFCTHYME----------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPML 198
++ ++ + D L PRGI DP G +++T W P +
Sbjct: 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKI 148
Query: 199 ERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF 258
E S +DGT R + + P G+T D + + WVD + +N R+ + +G
Sbjct: 149 ETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL 208
Query: 259 PVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETI--ANFSRPFAIHIYHRQKQ 314
+ +T + NL+ T W+ S+I ++ S + +T +R + I I Q
Sbjct: 209 Q--YPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264
Score = 97.6 bits (243), Expect = 3e-23
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 322 TFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIE 381
T LL+A+ L TE K + + ++ +Y+ +++ I
Sbjct: 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 382 RRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
R + G +I + + EG+A+D + ++WTD+ + I VAK+ D + R+VL+
Sbjct: 62 RASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM-DGTQRRVLFDT 119
Score = 89.5 bits (222), Expect = 2e-20
Identities = 42/262 (16%), Positives = 86/262 (32%), Gaps = 60/262 (22%)
Query: 167 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDF 226
+ + G+A D +++T P + R+ L G E ++ + P G+ +D
Sbjct: 31 LHIPAKVIIGLAFDCVDKVVYWTDISE--PSIGRASLHGGEPTTIIRQDLGSPEGIALDH 88
Query: 227 PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSII 284
+ ++W D+ LD I+ DGT R+ + + N I NL+ T W N+
Sbjct: 89 LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT-GLVNPRGIVTDPVRGNLYWTDW-NRDNP 146
Query: 285 RVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGT 344
++ + D
Sbjct: 147 KIETSHMD---------------------------------------------------G 155
Query: 345 TEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGM 404
T + I+ +L P+ + + + + + ++ E G+ V+ G+ +
Sbjct: 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-EGLQYPFAV 214
Query: 405 AVDWMANNLYWTDAGIGTINVA 426
NLY+TD ++
Sbjct: 215 TSY--GKNLYYTDWKTNSVIAM 234
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 182 bits (463), Expect = 8e-51
Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 59/346 (17%)
Query: 3 FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT--DEGFSFQGVKTHLYETIEAFWEE 60
F+ + +C D DEC +C Q C N Y + K A+
Sbjct: 341 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 400
Query: 61 CFGPMDIEEWDEGLSFLTF------AQEAIYFCTHYMEHCM------------------- 95
+ + + + +
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
Query: 96 ---IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEA 152
I ++ P G+A+D +++T + + + G
Sbjct: 461 SYDTVISRDIQAPDGLAVDWIHSNIYWT--DSVLGTVSVADTKGV--------------- 503
Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
N SKPR I +DP G+M++T WG T +++ L+G + + +V
Sbjct: 504 ---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553
Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFP-VQNLYDITVFEN 271
T I +P G+T+D + +YWVD+ L I I+ +G +RKTI + + + + + VFE+
Sbjct: 554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED 613
Query: 272 NLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPD 316
+F T N++I N+ D +A N P + ++H QP
Sbjct: 614 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPR 659
Score = 73.7 bits (180), Expect = 4e-14
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 341 RDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG----KEVVIDT 396
+ I +L+ +D IY+++L+ +I ++ + VI
Sbjct: 409 MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 468
Query: 397 GIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYK 439
I +G+AVDW+ +N+YWTD+ +GT++VA RK L++
Sbjct: 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLFR 510
Score = 59.1 bits (142), Expect = 2e-09
Identities = 45/283 (15%), Positives = 96/283 (33%), Gaps = 70/283 (24%)
Query: 154 YFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERF 209
++ NL + + S ++++ ++ M+ + LD +
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYD 463
Query: 210 PMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF 269
+++ I P G+ VD+ ++YW D+ L + + G RK T+F
Sbjct: 464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------------TLF 509
Query: 270 ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLY--A 327
N S+P AI + P +Y
Sbjct: 510 RENG---------------------------SKPRAI----------VVDPVHGFMYWTD 532
Query: 328 KGKPAIIK--GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERR 383
G PA IK GL +G +++ +++ P+ +D +Y+ + + I
Sbjct: 533 WGTPAKIKKGGL----NGVDIYSLV-TENIQWPNGITLDLLSGR--LYWVDSKLHSISSI 585
Query: 384 KMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVA 426
+ G ++ +++ ++ + ++WTD I A
Sbjct: 586 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 628
Score = 57.5 bits (138), Expect = 5e-09
Identities = 31/289 (10%), Positives = 79/289 (27%), Gaps = 66/289 (22%)
Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHK 215
Y C L+ A+ + F + + L+R + +
Sbjct: 369 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR------SEYTSLIPN 422
Query: 216 IVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY-----DITVFE 270
+ + + + +YW D I D + +++ +
Sbjct: 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482
Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
+N++ T + V +T+
Sbjct: 483 SNIYWTD-SVLGTVSVADTKGVKRKTLFR------------------------------- 510
Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRG 389
+ +P I ++Y+ + T I++ + G
Sbjct: 511 ----------------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548
Query: 390 KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
++ I G+ +D ++ LYW D+ + +I+ ++ + + +L
Sbjct: 549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 597
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 178 bits (451), Expect = 2e-49
Identities = 65/321 (20%), Positives = 124/321 (38%), Gaps = 34/321 (10%)
Query: 6 PNKTQCVDADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPM 65
K QC + + + + + + Y ++ +
Sbjct: 353 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVV-AL 411
Query: 66 DIEEWDEGLSFLTFAQEAIYFC----THYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTK 121
D E + + +Q I H + I ++ P G+A+D +++T
Sbjct: 412 DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT- 470
Query: 122 WGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDP 181
+ + + G SKPR I +DP
Sbjct: 471 -DSVLGTVSVADTKGV------------------------KRKTLFREQGSKPRAIVVDP 505
Query: 182 TSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFI 241
G+M++T WG T +++ L+G + + +VT I +P G+T+D + +YWVD+ L I
Sbjct: 506 VHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 242 DRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-N 299
I+ +G +RKTI + + + + + VFE+ +F T N++I N+ D +A N
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 624
Query: 300 FSRPFAIHIYHRQKQPDALKP 320
P + ++H+ QP +
Sbjct: 625 LLSPEDMVLFHQLTQPRGVNW 645
Score = 73.3 bits (179), Expect = 4e-14
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 307 HIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEK 366
+ K A+ +L + L + I +L+ +D
Sbjct: 363 QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD------RSEYTSLIPNLRNVVALDTEVA 416
Query: 367 EEYIYYAELTSYVIERRKMFGRG----KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGT 422
IY+++L+ +I ++ + VI I +G+AVDW+ +N+YWTD+ +GT
Sbjct: 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 476
Query: 423 INVAKISDFSIRKVLYK 439
++VA RK L++
Sbjct: 477 VSVADT-KGVKRKTLFR 492
Score = 59.0 bits (142), Expect = 2e-09
Identities = 62/428 (14%), Positives = 128/428 (29%), Gaps = 119/428 (27%)
Query: 10 QCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQGVKTHLYETIEAFWEECFGPMDIE 68
+C + +G C C + + Y +GF + C + +
Sbjct: 291 ECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR------------CEDIDECQ 338
Query: 69 EWDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPM 128
+ D T +Q + Y C G+ A + +
Sbjct: 339 DPD------TCSQLCVNLEGGYKCQCE------------------EGFQLDPHTKACKAV 374
Query: 129 LERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFF 188
+ L T R + ++ NL + + S +++
Sbjct: 375 GSIAYLFFTNRHEV------------RKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYW 422
Query: 189 TKWGATRPMLERSLLDGTERFPM----VTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRI 244
+ ++ M+ + LD ++ I P G+ VD+ ++YW D+ L +
Sbjct: 423 SDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480
Query: 245 NYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPF 304
+ G RK T+F S+P
Sbjct: 481 DTKGVKRK--------------TLFREQG---------------------------SKPR 499
Query: 305 AIHIYHRQKQPDALKPSTFLLY--AKGKPAIIK--GLTFKRDGTTEQAIMPITDLKRPS- 359
AI + P +Y G PA IK GL +G +++ +++ P+
Sbjct: 500 AI----------VVDPVHGFMYWTDWGTPAKIKKGGL----NGVDIYSLV-TENIQWPNG 544
Query: 360 -VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA 418
+D +Y+ + + I + G ++ +++ ++ + ++WTD
Sbjct: 545 ITLDLLSGR--LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 602
Query: 419 GIGTINVA 426
I A
Sbjct: 603 INEAIFSA 610
Score = 56.4 bits (135), Expect = 1e-08
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 353 TDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMAN 411
+P I ++Y+ + T I++ + G ++ I G+ +D ++
Sbjct: 493 EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 552
Query: 412 NLYWTDAGIGTINVAKISDFSIRKVLY 438
LYW D+ + +I+ ++ + + +L
Sbjct: 553 RLYWVDSKLHSISSIDVNGGNRKTILE 579
Score = 51.3 bits (122), Expect = 5e-07
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 8/113 (7%)
Query: 329 GKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGR 388
+ I + G + + D++ P + IY+ + + G
Sbjct: 426 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485
Query: 389 GKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKIS----DFSIRKVL 437
++ + + VD + +YWTD G AKI + L
Sbjct: 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSL 534
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 160 bits (404), Expect = 2e-45
Identities = 79/322 (24%), Positives = 137/322 (42%), Gaps = 43/322 (13%)
Query: 15 DECLIDGSCDQTCTNTHLSYT-YTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEG 73
+EC +G C Q CTN+ ++ + + G+ + + + +A E
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRR----SCKALGPEPV----------- 46
Query: 74 LSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSL 133
L + I + + + NL + +F++ + R+
Sbjct: 47 --LLFANRIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVT--LDRILRAN 101
Query: 134 LDGTERFPMVTHKIVYPEA---------IYFCTHYME----------HCMIAIDLNLSKP 174
L+G+ +V+ + P +Y+ H + + +L KP
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 161
Query: 175 RGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWV 234
R IAL P G +++T WG T P +E S +DG+ R + + +P G+T+D+ + +YWV
Sbjct: 162 RAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 220
Query: 235 DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDY 294
D I+R N DG+ RK + + + + ITVFE++L+ T W +SI NKF +
Sbjct: 221 DAKHHVIERANLDGSHRKAVISQ-GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ 279
Query: 295 ETIA-NFSRPFAIHIYHRQKQP 315
E I P IH H Q+QP
Sbjct: 280 EIIRNKLHFPMDIHTLHPQRQP 301
Score = 84.5 bits (208), Expect = 4e-18
Identities = 50/290 (17%), Positives = 97/290 (33%), Gaps = 61/290 (21%)
Query: 153 IYFCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV 212
I + + + NL + +F++ + R+ L+G+ +V
Sbjct: 55 IRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVV 111
Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FE 270
+ + P G+ VD+ +YW D+ I+ N DG RK + ++ I + E
Sbjct: 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPME 170
Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGK 330
++ T W N I + + IA+
Sbjct: 171 GTIYWTDWGNTPRIEASSMDGSGRRIIAD------------------------------- 199
Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK 390
T L P+ + +Y+ + +VIER + G +
Sbjct: 200 ----------------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 237
Query: 391 EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
+ VI G+ + + V ++LYWTD +IN A ++++
Sbjct: 238 KAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNK 285
Score = 65.3 bits (158), Expect = 9e-12
Identities = 45/275 (16%), Positives = 88/275 (32%), Gaps = 64/275 (23%)
Query: 174 PRGIALDPTSGYMFFTK-----WGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
G L P A R + + L +E + ++ + + +
Sbjct: 26 EAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE-YTLLLNNLENAIALDFHHRR 84
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRV 286
+ V+W D LD I R N +G++ + + +++ + V + L+ T I V
Sbjct: 85 ELVFWSDVTLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSR-IEV 142
Query: 287 NKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTE 346
+ + +
Sbjct: 143 ANLDGAHRKVLLW----------------------------------------------- 155
Query: 347 QAIMPITDLKRPSVIDYHEKEEYIYYAEL-TSYVIERRKMFGRGKEVVIDTGIYNVEGMA 405
L++P I H E IY+ + + IE M G G+ ++ DT ++ G+
Sbjct: 156 ------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT 209
Query: 406 VDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
+D+ +YW DA I A + + V+ +G
Sbjct: 210 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 244
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 153 bits (388), Expect = 2e-43
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 29/220 (13%)
Query: 98 IDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCT 157
I ++ P G+A+D +++T + + G
Sbjct: 72 ISRDIQAPDGLAVDWIHSNIYWTDSVLGT--VSVADTKGV-------------------- 109
Query: 158 HYMEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV 217
N SKPR I +DP G+M++T WG T +++ L+G + + +VT I
Sbjct: 110 ----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQ 164
Query: 218 YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKG-FPVQNLYDITVFENNLFVT 276
+P G+T+D + +YWVD+ L I I+ +G +RKTI + + + + + VFE+ +F T
Sbjct: 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224
Query: 277 SWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
N++I N+ D +A N P + ++H QP
Sbjct: 225 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQP 264
Score = 87.4 bits (216), Expect = 2e-19
Identities = 38/277 (13%), Positives = 87/277 (31%), Gaps = 62/277 (22%)
Query: 170 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG----TERFPMVTHKIVYPYGVTVD 225
NL + + S ++++ + M+ + LD + +++ I P G+ VD
Sbjct: 28 NLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 85
Query: 226 FPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSI 283
+ ++YW D+ L + + G RKT+ + I V ++ T W +
Sbjct: 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAK 144
Query: 284 IRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDG 343
I+ N D ++
Sbjct: 145 IKKGGLNGVDIYSLVT-------------------------------------------- 160
Query: 344 TTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEG 403
+++ P+ I +Y+ + + I + G ++ +++
Sbjct: 161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 211
Query: 404 MAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLYKG 440
++ + ++WTD I A S +L +
Sbjct: 212 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248
Score = 87.4 bits (216), Expect = 2e-19
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 323 FLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIER 382
+L + ++ +T D + ++ I +L+ +D IY+++L+ +I
Sbjct: 3 YLFFTNRHE--VRKMTL--DRSEYTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICS 56
Query: 383 RKMFGRGK----EVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
++ + VI I +G+AVDW+ +N+YWTD+ +GT++VA RK L+
Sbjct: 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT-KGVKRKTLF 115
Query: 439 KG 440
+
Sbjct: 116 RE 117
Score = 55.4 bits (133), Expect = 1e-08
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 18/169 (10%)
Query: 273 LFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLY--AKG 329
LF T N+ +R + +Y ++ N A+ + ++ +Y
Sbjct: 4 LFFT---NRHEVRKMTLDRSEYTSLIPNLRNVVAL----------DTEVASNRIYWSDLS 50
Query: 330 KPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRG 389
+ I + G + + D++ P + IY+ + + G
Sbjct: 51 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110
Query: 390 KEVVIDTGIYNVEGMAVDWMANNLYWTDAGI-GTINVAKISDFSIRKVL 437
++ + + VD + +YWTD G I + + L
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSL 158
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 148 bits (375), Expect = 2e-41
Identities = 64/236 (27%), Positives = 117/236 (49%), Gaps = 25/236 (10%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMV-THKIVYPEAI------ 153
L + + G ++++ ++R+ + TE V ++ P+ +
Sbjct: 33 GLEDAAAVDFVFSHGLIYWSDVS--EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90
Query: 154 ---YFCTHYME----------HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLER 200
Y+ + L +PR IALDP+SG+M++T WG P +ER
Sbjct: 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIER 149
Query: 201 SLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV 260
+ +DG+ RF ++ +I +P G+T+D+ + +YW D L+FI + N DGT+R+ + KG +
Sbjct: 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG-SL 208
Query: 261 QNLYDITVFENNLFVTSWRNQSIIRVNKFNSDDYETIA-NFSRPFAIHIYHRQKQP 315
+ + +T+FE+ L+ T W SI+ NK+ + I + P IH + +Q+QP
Sbjct: 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQP 264
Score = 95.1 bits (236), Expect = 6e-22
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 320 PSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYV 379
+ LLYA + + E A + + L+ + +D+ IY+++++
Sbjct: 3 SAPLLLYANRR-DLRL---VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58
Query: 380 IERRKMFGRG-KEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTINVAKISDFSIRKVLY 438
I+R + + V+ +G+ + +G+A DW+ LYWTD+ I V+ + D S+RKVL+
Sbjct: 59 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL-DGSLRKVLF 117
Query: 439 KG 440
Sbjct: 118 WQ 119
Score = 83.6 bits (206), Expect = 4e-18
Identities = 42/262 (16%), Positives = 91/262 (34%), Gaps = 25/262 (9%)
Query: 185 YMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRI 244
+ + R + +G E +V + V F +YW D + I R
Sbjct: 6 LLLYANRRDLRLV---DATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 245 NYDGTDRKTIRKGFPVQNLYDITV--FENNLFVTSWRNQSIIRVNKFNSDDYETIA--NF 300
++ T+ + + + L+ T I N + + +
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN-LDGSLRKVLFWQEL 121
Query: 301 SRPFAIHIYHRQKQPDALKPSTFLLYA--KGKPAIIKGLTFKRDGTTEQAIMPITDLKRP 358
+P AI AL PS+ +Y G+ I DG++ I+ +++ P
Sbjct: 122 DQPRAI----------ALDPSSGFMYWTDWGEVPKI--ERAGMDGSSRFIIIN-SEIYWP 168
Query: 359 SVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDA 418
+ + +E+ +Y+A+ I + + G ++ V+ + + + + + LYWTD
Sbjct: 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW 226
Query: 419 GIGTINVAKISDFSIRKVLYKG 440
+I + ++
Sbjct: 227 STHSILACNKYTGEGLREIHSD 248
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 70.1 bits (171), Expect = 1e-13
Identities = 25/209 (11%), Positives = 54/209 (25%), Gaps = 22/209 (10%)
Query: 101 NLSKPRGIALDPTSGYMFFTKW-GATRPMLERSLLDGTERFPMVTHKIVYPEA----IYF 155
L I Y+++ + T L R +DG E+ + H + Y+
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYY 161
Query: 156 CTHYMEHCMIAIDLNLSKPRGIALDPTS-------GYMFFTKWGATRPMLERSLLDGTER 208
D +++ + ++
Sbjct: 162 NNPKNGQLYR-YDTASQSEALFYDCNCYKPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP 219
Query: 209 FPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV 268
+ I + + Y + + DGT K + KG +I V
Sbjct: 220 VVLTEANIEHYNVY----GSLIFYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINV 271
Query: 269 FENNLFVTSWRNQSIIRVNKFNSDDYETI 297
++ T + + + N D + +
Sbjct: 272 TSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 42.0 bits (98), Expect = 2e-04
Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 34/230 (14%)
Query: 170 NLSKPRGIALDPTSGYMFFTKW-GATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
L I Y+++ + T L R +DG E+ KI Y T +
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-----KKIKNHYLFTCNTSD 156
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSW-RNQSIIRVN 287
++ Y+ + + R + + + + N++ R+ +I+ VN
Sbjct: 157 RYFYYNNPKNGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVN 213
Query: 288 KFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLY--AKGKPAIIKGLTFKRDGTT 345
N + + ++ + + Y PA+ K DGT
Sbjct: 214 INNPNPVVLTEANIEHYNVY-------------GSLIFYQRGGDNPALCV---VKNDGTG 257
Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVID 395
+ + + +V +Y+Y+ + S +
Sbjct: 258 FKELAK-GEFCNINVTS-----QYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
Score = 42.0 bits (98), Expect = 2e-04
Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 231 VYWVDTYLDF-IDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKF 289
V++ +T + + +N DG++ + I +N ++ NQ I F
Sbjct: 28 VFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFF 83
Query: 290 NSDDYETIA-NFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGL-TFKRDGTTEQ 347
+ D + + + +L ++ Y L + DG +
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYASLI-GNYIYYLHYDTQTATSLYRIRIDGEEK- 141
Query: 348 AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMAVD 407
+K + + + Y YY + + R + + + D Y +
Sbjct: 142 -----KKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDT 196
Query: 408 WMANNLYWTDAG 419
+ Y+ D
Sbjct: 197 NV----YYMDVN 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 57.7 bits (140), Expect = 2e-09
Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 28/260 (10%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
+ P GI + G ++ T+ A + LDG + +T+
Sbjct: 14 DTGPYGITVSD-KGKVWITQHKANM--ISCINLDGKITEYPLPTPDAKVMCLTIS-SDGE 69
Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSIIRVNKF 289
V++ + + I RI G K P Y IT +++ T R+ +
Sbjct: 70 VWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGN---RIGRI 125
Query: 290 NSDD----YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTT 345
D YE S P I L L + + + I +T G
Sbjct: 126 TDDGKIREYELPNKGSYPSFI----------TLGSDNALWFTENQNNAIGRIT--ESGDI 173
Query: 346 EQAIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVEGMA 405
+ +P T P I ++ +++ E+ I R G E I T +
Sbjct: 174 TEFKIP-TPASGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAIT 231
Query: 406 VDWMANNLYWTDAGIGTINV 425
+L++T+ G I
Sbjct: 232 AG-AGIDLWFTEWGANKIGR 250
Score = 56.6 bits (137), Expect = 4e-09
Identities = 52/335 (15%), Positives = 102/335 (30%), Gaps = 64/335 (19%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYME 161
+ P GI + G ++ T+ A + LDG +T
Sbjct: 14 DTGPYGITVSD-KGKVWITQHKANM--ISCINLDGK-----ITE---------------- 49
Query: 162 HCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYG 221
+ +K + + G ++FT+ A + + R G + + + PYG
Sbjct: 50 ---YPLPTPDAKVMCLTISS-DGEVWFTENAANK--IGRITKKGIIKEYTLPNPDSAPYG 103
Query: 222 VTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRN 280
+T P +++ + + I RI DG + IT+ +N L+ T +N
Sbjct: 104 ITEG-PNGDIWFTEMNGNRIGRITDDGK-IREYELPNKGSYPSFITLGSDNALWFTENQN 161
Query: 281 QSIIRVNKFNSD----DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIK 335
+ + +++ S P I L + I +
Sbjct: 162 N---AIGRITESGDITEFKIPTPASGPVGI----------TKGNDDALWFVEIIGNKIGR 208
Query: 336 GLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVV 393
G + +P T RP +++ E + I R +E
Sbjct: 209 ---ITTSGEITEFKIP-TPNARPHAITAG---AGIDLWFTEWGANKIGRLTSNNIIEEYP 261
Query: 394 IDTGIYNVEGMAVDWMANNLYWTDAG--IGTINVA 426
I G+ D +++ IG + +
Sbjct: 262 IQIKSAEPHGICFD--GETIWFAMECDKIGKLTLI 294
Score = 48.1 bits (115), Expect = 3e-06
Identities = 33/211 (15%), Positives = 68/211 (32%), Gaps = 29/211 (13%)
Query: 96 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-- 153
+ S P GI P +G ++FT+ R + R DG R + +K YP I
Sbjct: 92 YTLPNPDSAPYGITEGP-NGDIWFTEMNGNR--IGRITDDGKIREYELPNKGSYPSFITL 148
Query: 154 ------YFCTHYMEHCMIAIDLN-----------LSKPRGIALDPTSGYMFFTKWGATRP 196
+F T + + I + S P GI ++F + +
Sbjct: 149 GSDNALWF-TENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNK- 205
Query: 197 MLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRK 256
+ R G + P+ +T +++ + + I R+ + +
Sbjct: 206 -IGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNI-IEEYPI 262
Query: 257 GFPVQNLYDITVFENNLFVTSWRNQSIIRVN 287
+ I ++ ++ I ++
Sbjct: 263 QIKSAEPHGICFDGETIWFAMECDK-IGKLT 292
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 53.5 bits (129), Expect = 4e-08
Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 29/267 (10%)
Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTV 224
+ +K + + G ++FT+ GA + + + S G +P+ PYG+T
Sbjct: 55 FEVPTPDAKVMCLIVSS-LGDIWFTENGANK-IGKLSKKGGFTEYPLPQ-PDSGPYGITE 111
Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSI 283
+++ D I ++ DGT IT+ +N L+ T +N SI
Sbjct: 112 G-LNGDIWFTQLNGDRIGKLTADGTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169
Query: 284 IRVNK-FNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIKGLTFKR 341
R+ ++Y N + P I L + I +
Sbjct: 170 GRITNTGKLEEYPLPTNAAAPVGI----------TSGNDGALWFVEIMGNKIGR---ITT 216
Query: 342 DGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIY 399
G + +P T RP K I++ E + I R +E + T
Sbjct: 217 TGEISEYDIP-TPNARPHAITAG---KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENA 272
Query: 400 NVEGMAVDWMANNLYWTDAG-IGTINV 425
G+ ++++ IG +N+
Sbjct: 273 EPHGITFG-KDGSVWFALKCKIGKLNL 298
Score = 53.5 bits (129), Expect = 4e-08
Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 38/263 (14%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVT--HKIVYPYGVTVDFPT 228
S P GI G ++FT+ A + + LD + R + V
Sbjct: 19 DSGPYGITSSE-DGKVWFTQHKANK--ISS--LDQSGRIKEFEVPTPDAKVMCLIVS-SL 72
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFEN-NLFVTSWRNQSIIRVN 287
+++ + + I +++ G P Y IT N +++ T R+
Sbjct: 73 GDIWFTENGANKIGKLSKKGG-FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD---RIG 128
Query: 288 KFNSD----DYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA-KGKPAIIKGLTFKRD 342
K +D +Y+ S P I L L + +I +
Sbjct: 129 KLTADGTIYEYDLPNKGSYPAFI----------TLGSDNALWFTENQNNSIGR---ITNT 175
Query: 343 GTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYN 400
G E+ +P T+ P + +++ E+ I R G E I T
Sbjct: 176 GKLEEYPLP-TNAAAPVGITSG---NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR 231
Query: 401 VEGMAVDWMANNLYWTDAGIGTI 423
+ + +++T+ G I
Sbjct: 232 PHAITAG-KNSEIWFTEWGANQI 253
Score = 39.2 bits (92), Expect = 0.002
Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 31/206 (15%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-------- 153
S P GI +G ++FT+ R + + DGT + +K YP I
Sbjct: 103 DSGPYGITEGL-NGDIWFTQLNGDR--IGKLTADGTIYEYDLPNKGSYPAFITLGSDNAL 159
Query: 154 YFCTHYMEHCMIAIDLN-----------LSKPRGIALDPTSGYMFFTKWGATRPMLERSL 202
+F T + + I + P GI G ++F + + + R
Sbjct: 160 WF-TENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNK--IGRIT 215
Query: 203 LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQN 262
G + P+ +T +++ + + I RI D T + +
Sbjct: 216 TTGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNT-IQEYQLQTENAE 273
Query: 263 LYDITV-FENNLFVTSWRNQSIIRVN 287
+ IT + +++ I ++N
Sbjct: 274 PHGITFGKDGSVWFAL--KCKIGKLN 297
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 51.4 bits (124), Expect = 2e-07
Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
L P +A+ SG + T+ T + + G + +P GVTVD
Sbjct: 76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVD-NKGR 133
Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFVTSWRNQSIIRVNKF 289
+ V+ + + + +G ++ + V + +F++ R V F
Sbjct: 134 IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH---CVKVF 190
Query: 290 NSD 292
N +
Sbjct: 191 NYE 193
Score = 35.2 bits (82), Expect = 0.031
Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 16/130 (12%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTE--RFPMVTH---KIVYPYGVTVD 225
++P G+A++ + R ++ +G +F +++YP V V
Sbjct: 29 FTEPSGVAVNA-QNDIIVADTNNHR--IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV 85
Query: 226 FPTKHVYWV--DTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQS 282
V + I N G + +Q+ +TV + + V +
Sbjct: 86 -RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVM- 142
Query: 283 IIRVNKFNSD 292
RV F+ +
Sbjct: 143 --RVIIFDQN 150
Score = 31.8 bits (73), Expect = 0.36
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 218 YPYGVTVDFPTKHVYWVDTYLDF-IDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFV 275
YP GV ++ + D + +F + DG + +D+ + + ++ +
Sbjct: 208 YPIGVGIN-SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVL 266
Query: 276 TSWRNQSIIRVNKF 289
S R+ +
Sbjct: 267 ASKDY----RLYIY 276
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 51.1 bits (123), Expect = 2e-07
Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 56/268 (20%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKH 230
P G+A+D +G ++ T G + + T + + + P G+ VD
Sbjct: 23 RLSPSGVAVDS-AGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGT 79
Query: 231 VYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITV-FENNLFVTSWRNQSIIRVNKF 289
VY D + G + V + ++V N RV K
Sbjct: 80 VYVTDFNNRVVTLAAGSNNQTVLPFDGL--NYPEGLAVDTQGAVYVADRGNN---RVVKL 134
Query: 290 NSD-DYETIA---NFSRPFAI------HIY------HRQKQPDALKPSTFLLYAKGKPAI 333
+ +T+ + P + ++Y +R +
Sbjct: 135 AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR---------------------V 173
Query: 334 IKGLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSYVIERRKMFGRGKE 391
+K + + Q ++P TD+ P +D + +Y E + + +
Sbjct: 174 VK---LEAESNN-QVVLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTTST 226
Query: 392 VVIDTGIYNVEGMAVDWMANNLYWTDAG 419
V+ TG+ +AVD +Y D G
Sbjct: 227 VLPFTGLNTPLAVAVDS-DRTVYVADRG 253
Score = 51.1 bits (123), Expect = 2e-07
Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 32/229 (13%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-------Y 154
P G+A+D +G ++ T G + + T + + + P+ +
Sbjct: 23 RLSPSGVAVDS-AGNVYVTSEGMYG-RVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV 80
Query: 155 FCTHYMEHCMIAIDLN----------LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD 204
+ T + + + L+ P G+A+D G ++ G R + +
Sbjct: 81 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNR--VVKLAAG 137
Query: 205 GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLY 264
+ + + P GV VD + +VY DT + + ++ + ++ + + +
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFT-DITAPW 195
Query: 265 DITVF-ENNLFVTSWRNQSIIRVNKFNSD-DYETIAN---FSRPFAIHI 308
I V ++VT +V K + T+ + P A+ +
Sbjct: 196 GIAVDEAGTVYVTEHNTN---QVVKLLAGSTTSTVLPFTGLNTPLAVAV 241
Score = 42.2 bits (100), Expect = 2e-04
Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 27/171 (15%)
Query: 102 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAI-------- 153
L+ P G+A+D G ++ G R + + + + + P+ +
Sbjct: 107 LNYPEGLAVDT-QGAVYVADRGNNR--VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV 163
Query: 154 YFCTHYMEHCMIAIDLN-----------LSKPRGIALDPTSGYMFFTKWGATRPMLERSL 202
Y T + ++ ++ ++ P GIA+D +G ++ T+ + + + L
Sbjct: 164 YV-TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQ--VVKLL 219
Query: 203 LDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKT 253
T + + P V VD + VY D D + ++
Sbjct: 220 AGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLEHHHHH 269
Score = 37.6 bits (88), Expect = 0.005
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 53/225 (23%)
Query: 218 YPYGVTVDFPTKHVYWVDTYL-DFIDRINYDGTDRKTIRKGFPVQNLYDITVF-ENNLFV 275
P GV VD +VY + + ++ T T+ + + V ++V
Sbjct: 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDGAGTVYV 82
Query: 276 TSWRNQSIIRVNKFNSDDYETIA---NFSRPFAI------HIY------HRQKQPDALKP 320
T + N+ V + +T+ + P + +Y +R
Sbjct: 83 TDFNNR---VVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNR--------- 130
Query: 321 STFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPS--VIDYHEKEEYIYYAELTSY 378
++K T Q ++P T L P +D +Y + +
Sbjct: 131 ------------VVK---LAAGSKT-QTVLPFTGLNDPDGVAVD---NSGNVYVTDTDNN 171
Query: 379 VIERRKMFGRGKEVVIDTGIYNVEGMAVDWMANNLYWTDAGIGTI 423
+ + + + V+ T I G+AVD A +Y T+ +
Sbjct: 172 RVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQV 215
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 46.6 bits (111), Expect = 8e-07
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 3 FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGF 41
F+ + +C D DEC +C Q C N Y +EGF
Sbjct: 58 FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 97
Score = 40.8 bits (96), Expect = 9e-05
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 5 GPNKTQCVDADECLID-GSCDQTCTNTHLSYT 35
+ +ECL + G C C + + Y
Sbjct: 20 NLYFQGAMGTNECLDNNGGCSYVCNDLKIGYE 51
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 45.8 bits (109), Expect = 2e-06
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 3 FRGPNKTQCVDADECLIDGSCDQTCTNTHLSYT-YTDEGFSFQG 45
+ + C D DEC G C C N ++ + G
Sbjct: 69 YILDDGFICTDIDECENGGFCSGVCHNLPGTFECICGPDSALAG 112
Score = 29.6 bits (67), Expect = 0.68
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 13 DADECLIDGSCDQTCTN-THLSYT 35
D C +C+ C SY
Sbjct: 3 PVDPCF-RANCEYQCQPLDQTSYL 25
Score = 28.9 bits (65), Expect = 1.3
Identities = 5/45 (11%), Positives = 9/45 (20%), Gaps = 5/45 (11%)
Query: 5 GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQGVKT 48
+C +C C + EG+
Sbjct: 36 PHEPHRCQMFCNQ---TACPADCDPN-TQASCECPEGYILDDGFI 76
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 42.6 bits (101), Expect = 1e-05
Identities = 11/30 (36%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 PNKTQCVDADECLIDGSCDQTCTNTHLSYT 35
C D DEC + C Q C N YT
Sbjct: 37 LKSKSCEDIDECS-ENMCAQLCVNYPGGYT 65
Score = 30.7 bits (70), Expect = 0.17
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 13 DADECLID--GSCDQTCTNTHLSYT 35
D DEC + C N +
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFE 26
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 40.6 bits (96), Expect = 5e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 7 NKTQCVDADECLID-GSCDQTCTNTHLSYTYT-DEGFSFQGVKT 48
+CVD DEC + + TC N + T +EGF + T
Sbjct: 37 AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
Score = 39.5 bits (93), Expect = 1e-04
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 11 CVDADECLIDGSC-DQTCTNTHLSYTYT-DEGFSFQG 45
VD DEC C C NT SY G+ G
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG 38
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 41.6 bits (98), Expect = 1e-04
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 6 PNKTQCVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG 45
P + CVD + D + + + G
Sbjct: 36 PTRVGCVDTRSG--NCYLDIRPRGDNGDTACSNEIGVGVSK 74
Score = 38.1 bits (89), Expect = 0.001
Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 3 FRG-PNKTQCVDADECLID--GSCDQTCTNTHLSYT 35
FR P D DEC C NT S+
Sbjct: 110 FRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQ 145
Score = 35.8 bits (83), Expect = 0.011
Identities = 4/49 (8%), Positives = 8/49 (16%), Gaps = 2/49 (4%)
Query: 3 FRGPNKTQCVDADECLID-GSCDQTCTNTHLSYT-YTDEGFSFQGVKTH 49
+ C + + EGF +
Sbjct: 70 VGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVI 118
Score = 34.6 bits (80), Expect = 0.025
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 13 DADECLIDGS-CDQTCTNTHLSYT 35
D +ECL + C NT SY
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYI 25
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 41.2 bits (97), Expect = 1e-04
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 3 FRGPNKTQCVDADECLIDGSC--DQTCTNTHLSYT 35
+ TQC D DEC + + C NT S+
Sbjct: 96 YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFK 130
Score = 36.9 bits (86), Expect = 0.003
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 13 DADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQG 45
D DEC + C N+ S+ +
Sbjct: 3 DIDECESSPCINGVCKNSPGSFICECSSESTLDP 36
Score = 29.2 bits (66), Expect = 1.4
Identities = 4/39 (10%), Positives = 7/39 (17%), Gaps = 1/39 (2%)
Query: 11 CVDADECLIDGSCDQTCTNTHLSYTYT-DEGFSFQGVKT 48
+C T +G+S
Sbjct: 65 ATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQ 103
Score = 28.9 bits (65), Expect = 2.0
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 6 PNKTQCVDADECLIDGSCDQTCTNTHLSYTYT 37
P KT C++ + TC T +
Sbjct: 36 PTKTICIETIKG--------TCWQTVIDGRCE 59
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 5 GPNKTQCVDADECLID--GSCDQTCTNTHLSYT 35
C+D DEC D C NT SY
Sbjct: 37 FMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYR 69
Score = 29.6 bits (67), Expect = 0.52
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 13 DADECLID-GSCDQ-TCTNTHLSYTYT-DEGFSFQGVKTH 49
D DEC I C + C NT + DEG+ +
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK 41
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 40.1 bits (94), Expect = 2e-04
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 3 FRGPNKTQCVDADECLID-GSCDQTCTNTHLSYT 35
+ G + V C +D G C C
Sbjct: 43 WEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRR 76
Score = 28.9 bits (65), Expect = 1.1
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 9 TQCVDADECLIDGSCDQ---------TCTNTHLSYT 35
++ VD D+CL+ TC + S++
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFS 36
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 39.0 bits (91), Expect = 6e-04
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 2 TFRGPNKTQCVDADECLID-GSCD--QTCTNTHLSYT 35
TF+ ++ C D DEC CD C NT SY+
Sbjct: 84 TFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYS 120
Score = 36.3 bits (84), Expect = 0.005
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 4/35 (11%)
Query: 5 GPNKTQCVDADECLIDG----SCDQTCTNTHLSYT 35
C D +EC C NT SY
Sbjct: 35 TTPMETCDDINECATLSKVSCGKFSDCWNTEGSYD 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 7e-04
Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 100/279 (35%)
Query: 215 KIV--YPYGVTVDFPT---KHVYWVDTYLDFIDRINYDGTDRKTIRKGFP--VQNLYDIT 267
IV P +T+ F K + + Y I DG + K F ++ T
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIR--ENYSAMIFETIVDG--KLKTEKIFKEINEHSTSYT 1718
Query: 268 VFENN-------------LFVTS------WRNQSIIRVNKFNSDDY-------E-----T 296
F + L + +++ +I +D E +
Sbjct: 1719 -FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI-----PADATFAGHSLGEYAALAS 1772
Query: 297 IANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLK 356
+A+ ++ +++ +G + + G + ++ I +
Sbjct: 1773 LAD-VMSIE----------SLVE----VVFYRGM-TMQVAVPRDELGRSNYGMIAI-NPG 1815
Query: 357 RPSVIDYHEKEEYI--YYAELTSYVIERRKMFGRGKEVVIDTGI--YNVEGM-------- 404
R + E +Y+ + T +++E I YNVE
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVE----------------IVNYNVENQQYVAAGDL 1859
Query: 405 -AVDWMANNLYWTDAGIGTINVAKISD-FSIRKV---LY 438
A+D + N L + I++ ++ S+ +V L+
Sbjct: 1860 RALDTVTNVL--NFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 39.6 bits (92), Expect = 0.001
Identities = 20/133 (15%), Positives = 34/133 (25%), Gaps = 13/133 (9%)
Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATR--------PMLERSLLDGTERFPMVTHKI 216
+ + GI P L
Sbjct: 110 LLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168
Query: 217 VYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGF-PVQNLYDITV-FENNLF 274
G+ +Y +T + RI D TD+ + F N+ D E NL+
Sbjct: 169 PAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLY 226
Query: 275 VTSWRNQSIIRVN 287
+ S++R+
Sbjct: 227 GATHIYNSVVRIA 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.006
Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 65/199 (32%)
Query: 269 FENNLFVTSWRNQSIIRVN--KFNSD-DYETIANFSRPFAI-----HIYHRQKQPDALKP 320
FE ++ + I+ V F + D + + + + HI DA+
Sbjct: 9 FETG--EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSG 63
Query: 321 STFL---LYAKGKPAIIKGLTFKRDGTTEQAIM-PI-TDLKRPSVIDYHEKEEYIYYAE- 374
+ L L +K + +++ + + +M PI T+ ++PS++ YI +
Sbjct: 64 TLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM----TRMYIEQRDR 118
Query: 375 -------LTSYVIERRK----------------------MFGRGK-----EVVIDTGIYN 400
Y + R + + G GK +V + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-- 176
Query: 401 VEGMAVDWMANNLYWTDAG 419
M ++W +
Sbjct: 177 -----QCKMDFKIFWLNLK 190
Score = 34.8 bits (79), Expect = 0.063
Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 43/212 (20%)
Query: 49 HLYETIEAFWEECFGPMDIEE--WDEGLSFLTFAQEAIYFCTHYMEHCMIAIDLNLSKPR 106
+++ + F P + W + + + + ++ ++ K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIK-----SDVMVVVNKLHKYSLVEKQ---PKES 424
Query: 107 GIALDPTSGYMFFTKWGATRPMLERSLLD---GTERFPMVTHKIVYPEAIYFCTHYMEHC 163
I++ S Y+ L RS++D + F I YF +H H
Sbjct: 425 TISIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHH- 480
Query: 164 MIAIDL--NLSKPRGIALDPTSGYMFF--------TKWGATRPMLERSLLDGTERFPMVT 213
+ I+ ++ R + LD + F T W A+ +L +L +
Sbjct: 481 LKNIEHPERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILN-TLQQ------LKF 529
Query: 214 HKIVYPYGVTVDFPTKHVYWVDTYLDFIDRIN 245
+K PY + + P V+ LDF+ +I
Sbjct: 530 YK---PY-ICDNDPKYERL-VNAILDFLPKIE 556
Score = 32.9 bits (74), Expect = 0.26
Identities = 42/313 (13%), Positives = 97/313 (30%), Gaps = 81/313 (25%)
Query: 132 SLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKPRGI-ALDPTSGYMFFTK 190
S D + + H I + E+C++ + N+ + A + +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSC------- 266
Query: 191 WGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLD----FIDRINY 246
+ LL T RF VT + T H T + + ++
Sbjct: 267 ---------KILL--TTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 247 DGTD-RKTIRKGFP---------VQNLYDITVFENNLFVTSWRNQSIIR--VNKFNSDD- 293
D + + P +++ + ++N V + +II +N +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 294 ---YETIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIM 350
++ ++ F P + HI P ++ + F + ++
Sbjct: 372 RKMFDRLSVF--PPSAHI-----------P----------TILLSLIWFDVIKSDVMVVV 408
Query: 351 PITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFGRGK--EVVIDTGIYNV------E 402
L + S+++ KE I + Y+ + K+ ++D YN+ +
Sbjct: 409 --NKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDH--YNIPKTFDSD 462
Query: 403 GMAVDWMANNLYW 415
+ ++ Y
Sbjct: 463 DLIPPYLDQYFYS 475
Score = 27.9 bits (61), Expect = 8.2
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 85 YFCTHYMEHCMIAIDL--NLSKPRGIALDPTSGYMFF--------TKWGATRPMLERSLL 134
YF +H H + I+ ++ R + LD + F T W A+ +L +L
Sbjct: 472 YFYSHIGHH-LKNIEHPERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILN-TLQ 525
Query: 135 DGT--ERFPMVTHKIVYPEAIY----FCTHYMEHCMIAIDLNLSKPRGIALDPTSGYMF 187
+ + + + Y + F E+ + + +L + IAL +F
Sbjct: 526 QLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 34.0 bits (78), Expect = 0.007
Identities = 9/33 (27%), Positives = 9/33 (27%), Gaps = 9/33 (27%)
Query: 12 VDADECLID---------GSCDQTCTNTHLSYT 35
VD DEC C C N Y
Sbjct: 2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYF 34
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 37.1 bits (86), Expect = 0.009
Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 27/154 (17%)
Query: 171 LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV----------YPY 220
P G+++D G + T + + + E ++ + + P
Sbjct: 90 FYLPHGLSIDT-DGNYWVTDVALHQ--VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146
Query: 221 GVTVDFPTKHVYWVDTYL-DFIDRINYDGTDRKTI-RKGFPVQNL-------YDITVF-- 269
V V+ T V+ D Y I + + G + + + +
Sbjct: 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH 206
Query: 270 ENNLFVTSWRNQSIIRVNKFNSDDYETIANFSRP 303
+ L V N R+ F +D E +
Sbjct: 207 LDQLCVADRENG---RIQCFKTDTKEFVREIKHA 237
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 37.1 bits (86), Expect = 0.013
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 36 YTDE--GFSFQGVKTHLYETIEAFWEECFGPMDIEEWDE 72
YTDE G + H+Y + F ++CF W
Sbjct: 697 YTDEDHGIASSTAHQHIYTHMSHFIKQCFSLPAAASWSH 735
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 34.6 bits (79), Expect = 0.056
Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 11/212 (5%)
Query: 214 HKIVYPYGVTVDFPTKHVY--WVDTYLDFIDRINYDGTDR-KTIRKGFPVQNLYDITVFE 270
P + K D + I+ Y+ T + + + +
Sbjct: 81 TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYG 140
Query: 271 NNLFVTSWRNQSIIRVNKFNSDDYE-TIANFSRPFAIHIYHRQKQPDALKPSTFLLYAKG 329
++V W Q+ I +D + +P ++ + K + T Y
Sbjct: 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK----MWTITDGGYEGS 196
Query: 330 KPAIIKGLTFKRDGTTEQ--AIMPITDLKRPSVIDYHEKEEYIYYAELTSYVIERRKMFG 387
++ D T PS + + + +Y+ + + +
Sbjct: 197 PYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPV-EADR 255
Query: 388 RGKEVVIDTGIYNVEGMAVDWMANNLYWTDAG 419
++ G+ V+ +Y DA
Sbjct: 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAI 287
Score = 30.8 bits (69), Expect = 0.96
Identities = 21/158 (13%), Positives = 37/158 (23%), Gaps = 25/158 (15%)
Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCM 164
P + +D M+ G R T +
Sbjct: 174 PTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW------ 226
Query: 165 IAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDG-TERFPMVTHKIVYPYGVT 223
P + L+ T +++ R + P + + YG+T
Sbjct: 227 ---------PSEVQLNGTRDTLYWINNDIWR----MPVEADRVPVRPFLEFRDTKYYGLT 273
Query: 224 VDFPTKHVYWVDTY----LDFIDRINYDGTDRKTIRKG 257
V+ VY D + R + G G
Sbjct: 274 VNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVG 311
Score = 30.0 bits (67), Expect = 1.7
Identities = 23/208 (11%), Positives = 56/208 (26%), Gaps = 23/208 (11%)
Query: 246 YDGTDRKTIRKGFPVQNLYDITVFENN-LFVTSWRNQSIIRVNKFNSDDYETIANFSRPF 304
D K + + + I + +VT + I +N + I
Sbjct: 69 IDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDM 128
Query: 305 AIHIYHRQKQPDALKPSTFLLYAKGKPAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYH 364
+ + +Y + K D T++ + +T +P+ +
Sbjct: 129 ESG------STEQMVQYGKYVYVNC--WSYQNRILKIDTETDKVVDELTIGIQPTSLVMD 180
Query: 365 EKEEYIYYAELTSYVIERRKMFGRGKEVVIDTGIYNVE------------GMAVDWMANN 412
+ + + + ID + VE + ++ +
Sbjct: 181 KYNKMWTITDGGYEGSP--YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDT 238
Query: 413 LYWTDAGIGTINVAKISDFSIRKVLYKG 440
LYW + I + V + ++
Sbjct: 239 LYWINNDIWRMPVEADRVPVRPFLEFRD 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 34.3 bits (78), Expect = 0.081
Identities = 26/155 (16%), Positives = 42/155 (27%), Gaps = 25/155 (16%)
Query: 101 NLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYM 160
LSK R I + M T Y T
Sbjct: 177 GLSKVRTICWTHEADSMIITNDQNNN----------------------DRPNNYILTRES 214
Query: 161 EHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV-YP 219
+I G P +G ++F W A + R E P+ T + +
Sbjct: 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVF--RYDFTTQETTPLFTIQDSGWE 272
Query: 220 YGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTI 254
+ + + Y V +I R +YD ++
Sbjct: 273 FHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLT 307
Score = 28.5 bits (63), Expect = 4.6
Identities = 26/247 (10%), Positives = 63/247 (25%), Gaps = 27/247 (10%)
Query: 213 THKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENN 272
++ D + ++ I+++ T+ G T ++
Sbjct: 133 CGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADS 192
Query: 273 LFVTSWRNQSIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLY--AKGK 330
+ +T+ +N + N + + + + + P LY +
Sbjct: 193 MIITNDQNNNDRPNNYILTRE-----SGFKVITELTKGQNCNGAETHPINGELYFNSWNA 247
Query: 331 PAIIKGLTFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTS---YVIERRKMFG 387
+ + ++ T + I D I +H Y Y + +
Sbjct: 248 GQVFRYDFTTQETTP---LFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTK 304
Query: 388 RGKEVVIDTGIYNVEG--------------MAVDWMANNLYWTDAGIGTINVAKISDFSI 433
R I G + ++ N Y + + I
Sbjct: 305 RLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364
Query: 434 RKVLYKG 440
R + +G
Sbjct: 365 RILTPQG 371
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted
catalysis, hydrolase; 1.69A {Homo sapiens} SCOP:
g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 29.8 bits (67), Expect = 0.30
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 11 CVDADECLID-GSCDQTCTNT 30
D C+ + G C+Q C++
Sbjct: 2 KDDQLICVNENGGCEQYCSDH 22
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 32.2 bits (73), Expect = 0.31
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 38/170 (22%)
Query: 174 PRGIALDPTSGYMFFTKWGATR-----PMLERSLLDGTERFPMVTHKIVYPYGVTVDFPT 228
+ALD T +++F E +L+ E PY +
Sbjct: 221 IGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLGTNPGPYLIYYF-VD 278
Query: 229 KHVYWVDTYLDFIDRINYDGTDRKTI----RKGFPV---------QNLYDITVFEN-NLF 274
+ Y D L + +I DG + + +TV E+ N +
Sbjct: 279 SNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY 337
Query: 275 VT-SWRNQSIIRVN---------------KFNSDDYETIANFSRPFAIHI 308
+ ++ + +++ D A F+ P+ I
Sbjct: 338 IVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICY 387
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 32.5 bits (74), Expect = 0.31
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 36 YTDE--GFSFQGVKTHLYETIEAFWEECF 62
Y DE F+ +K HLY +I F+ ECF
Sbjct: 693 YPDESHYFTSSSLKQHLYRSIINFFVECF 721
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 32.3 bits (73), Expect = 0.33
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 7 NKTQCVDADECLID-GSCDQ-----TCTNTHLSYT 35
N T C D DEC + C C NT +
Sbjct: 37 NGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFH 71
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 31.7 bits (72), Expect = 0.55
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 35 TYTDEGFSFQGVKT-HLYETIEAFWEECF 62
Y+D+ G+ T HLY + F ++CF
Sbjct: 690 WYSDQNHGLSGLSTNHLYTHMTHFLKQCF 718
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 31.3 bits (71), Expect = 0.65
Identities = 26/255 (10%), Positives = 52/255 (20%), Gaps = 58/255 (22%)
Query: 105 PRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKI---VYPEAI-------- 153
+ + P + + + I I
Sbjct: 86 MADVDITPDDQFAVTVTGLNHPFNM--QSYSFLKN--KFISTIPIPYDAVGIAISPNGNG 141
Query: 154 -YFCTHYMEHCMIAIDLNLSK---------------PRGIALDPTSGYMFFTKWGATRPM 197
+ + ++ P I P + F
Sbjct: 142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-- 199
Query: 198 LERSLLDGTERFPMVTHKIV----YPYGVTVDFPTKHVYWVDTYLDFIDRIN-YDGTDRK 252
+L+ + V P + V VY + + N GT
Sbjct: 200 --IGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257
Query: 253 TIRKGFPVQNLYDITVF---------ENNLFVTSWRNQ--SIIRVNKFNSDDYETIANFS 301
G + E LF+++ ++ + + + +A
Sbjct: 258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI---SGKVVGYVAGIE 314
Query: 302 RPFAIHIYHRQKQPD 316
I I H PD
Sbjct: 315 ANGGIAICH----PD 325
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 31.0 bits (70), Expect = 0.71
Identities = 26/181 (14%), Positives = 45/181 (24%), Gaps = 37/181 (20%)
Query: 103 SKPRGIALDPTSGYMFFTKWGATRPMLER---SLLDGTERFPMVTHKI---VYPEAIYF- 155
PRG+ L ++ ++ A+ + + + I I
Sbjct: 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--KLIDTIGPPGNKRHIVSG 311
Query: 156 -------CTHYMEHCMIAIDLNLSK----------PRGIALDPTSGYMFFTKWGATRPML 198
+ + DL K P IAL P Y++ + G P
Sbjct: 312 NTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTE 371
Query: 199 ERSLLDGTER----FPMVTHKIV-------YPYGVTVDFPTKHVYWVDTYLDFIDRINYD 247
T + P G+ V +++ D I D
Sbjct: 372 GYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431
Query: 248 G 248
G
Sbjct: 432 G 432
>1u5l_A Prion protein; pRNP, PRP, TSE, membrane protein; NMR {Trachemys
scripta} SCOP: d.6.1.1
Length = 108
Score = 29.2 bits (65), Expect = 0.92
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 224 VDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQS 282
D P + +W + + +++ Y + +++ +G V++ +ITV E + +N +
Sbjct: 23 FDRPEERQWWNENSNRYPNQVYYKEYNDRSVPEGRFVRDCVNITVTEYKIDPNENQNVT 81
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/22 (36%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 15 DECLID-GSCDQTCTNTHLSYT 35
C +D G CDQ C S
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVV 23
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus
musculus} SCOP: d.6.1.1
Length = 107
Score = 28.9 bits (64), Expect = 1.3
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 222 VTVDF-PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN 280
+ +DF + Y+ Y F D I Y+G + K V + + T N + +
Sbjct: 17 LDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQ 76
Query: 281 QSIIRV 286
S +
Sbjct: 77 DSKLHQ 82
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 30.1 bits (68), Expect = 1.5
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 27/148 (18%)
Query: 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV-------YPYGVTV 224
P G+AL P ++ T G + S+++ VT ++ P G+ V
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGD--KTV--SVIN------TVTKAVINTVSVGRSPKGIAV 165
Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV-QNLYDITVFENN--LFVTSWRNQ 281
VY + I I+ T ++ V I V +VT+ ++
Sbjct: 166 TPDGTKVYVANFDSMSISVID---TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTN-VDK 221
Query: 282 SIIRVNKFNSDDYETIANF---SRPFAI 306
V+ ++ + A P I
Sbjct: 222 YFNTVSMIDTGTNKITARIPVGPDPAGI 249
Score = 30.1 bits (68), Expect = 1.6
Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 57/275 (20%)
Query: 172 SKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIV-------YPYGVTV 224
S P G + P ++ + S++D T+ ++ P GV V
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSND----VSIIDTA------TNNVIATVPAGSSPQGVAV 81
Query: 225 DFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPV-QNLYDITVFENN--LFVTSWRNQ 281
K VY + + I D T ++ + + + L+VT+ ++
Sbjct: 82 SPDGKQVYVTNMASSTLSVI--DTTSNTVAGT-VKTGKSPLGLALSPDGKKLYVTNNGDK 138
Query: 282 SIIRVNKFNSDDYETIANFSRPFAIHIYHRQKQPDALKPSTFLLYA----KGKPAIIKGL 337
++ +N T++ P I A+ P +Y ++I
Sbjct: 139 TVSVINTVTKAVINTVSVGRSPKGI----------AVTPDGTKVYVANFDSMSISVI--- 185
Query: 338 TFKRDGTTEQAIMPITDLKRPSVIDYHEKEEYIYYAELTSY-----VIERRKMFGRGKEV 392
D T I + PS I + + Y + Y +I+ ++
Sbjct: 186 ----DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-----KI 236
Query: 393 V--IDTGIYNVEGMAVDWMANNLYWTDAGIGTINV 425
I G G+AV +Y + T++V
Sbjct: 237 TARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSV 270
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 30.1 bits (68), Expect = 1.8
Identities = 10/31 (32%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 35 TYTDEGFSFQGVKT-HLYETIEAFWEECFGP 64
TY G H Y EAF C P
Sbjct: 711 TYPGAKHGLSGADALHRYRVAEAFLGRCLKP 741
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR
{Homo sapiens} SCOP: d.6.1.1
Length = 129
Score = 28.6 bits (63), Expect = 1.8
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 222 VTVDF-PTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRN 280
+ +DF + Y+ Y F D I+Y+G + K V + T N N
Sbjct: 43 LDIDFGAEGNRYYEANYWQFPDGIHYNGCSEANVTKEAFVTGCINATQAANQGEFQKPDN 102
Query: 281 QSIIRV 286
+ +V
Sbjct: 103 KLHQQV 108
>1hlb_A Hemoglobin (deoxy); oxygen transport; HET: HEM; 2.50A {Caudina
arenicola} SCOP: a.1.1.2
Length = 158
Score = 29.0 bits (65), Expect = 2.0
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 29 NTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLT---FAQEA 83
TH + + L E ++A F + W + S + +
Sbjct: 103 RTHDLNKVGAD--HYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAVLLVKHG 158
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 29.0 bits (64), Expect = 3.3
Identities = 39/295 (13%), Positives = 77/295 (26%), Gaps = 39/295 (13%)
Query: 43 FQGVKTHLYETIEAFWEECFGPMDIEEWDEGLSFLT---FAQEAIYFCTHYMEHCMIAID 99
+ V G D+E GL+F++ + F ++ +D
Sbjct: 31 HREVTPVELPNCNLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGK-ILLMD 89
Query: 100 LNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHY 159
LN +P L+ + + + + D T +V H F
Sbjct: 90 LNEKEPAVSELEIIGNTLDISSFN-PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQE 148
Query: 160 ----MEHCMIAIDLNLSKPRGIALDPTSGYMFFTKWGATRPMLERSLLD----------- 204
+ H L I + + T +S
Sbjct: 149 EEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207
Query: 205 -GTERFPMVTHKIVYPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIRKGFPVQNL 263
+V + G+ + K+VY + I T + L
Sbjct: 208 YSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL 267
Query: 264 YD-ITV--FENNLFVTSWRN--------------QSIIRVNKFNSDDYETIANFS 301
D I+V +L+V N ++R+ S++ + ++
Sbjct: 268 VDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYA 322
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
bioinsecticicide, pore formation, receptor recognition,
sporulation; 2.8A {Bacillus thuringiensis}
Length = 612
Score = 29.1 bits (64), Expect = 3.4
Identities = 25/183 (13%), Positives = 51/183 (27%), Gaps = 11/183 (6%)
Query: 115 GYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPEAIYFCTHYMEHCMIAIDLNLSKP 174
F R L + YP Y +C+ L+
Sbjct: 157 AVKFEAYLKNNRQFDYLEPLPTAIDY--------YPVLTKAIEDYTNYCVTTYKKGLNLI 208
Query: 175 RGIALDPTSGYMFFTKWGATRPMLERSLLDGTERFPMVTHKIVYPYGVTVDFPTKHVYW- 233
+ G + + + R + ++LD FP YP GV + T+ +Y
Sbjct: 209 KTTPDSNLDGNINWNTYNTYRTKMTTAVLDLVALFPNYDVGK-YPIGVQSE-LTREIYQV 266
Query: 234 VDTYLDFIDRINYDGTDRKTIRKGFPVQNLYDITVFENNLFVTSWRNQSIIRVNKFNSDD 293
++ ++ + R+ L + +E + S + + D+
Sbjct: 267 LNFEESPYKYYDFQYQEDSLTRRPHLFTWLDSLNFYEKAQTTPNNFFTSHYNMFHYTLDN 326
Query: 294 YET 296
Sbjct: 327 ISQ 329
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.8 bits (63), Expect = 4.8
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 5 GPNKTQCVDADECLIDGSCDQTCTNTHLSYTYT 37
GP ++ C+ + + +C TC L T
Sbjct: 218 GPRESDCLVCRKFRDEATCKDTCPPLMLYNPTT 250
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 28.4 bits (62), Expect = 5.8
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 2 TFRGPNKTQCVDADECLIDGSCDQTC-TNTHLSYTYTDEG 40
GP TQCV+ L C + C L Y +
Sbjct: 498 HCWGPGPTQCVNCSHFLRGQECVEECRVWKGLPREYVSDK 537
>1gdj_A Leghemoglobin (deoxy); oxygen transport; HET: HEM; 1.70A {Lupinus
luteus} SCOP: a.1.1.2 PDB: 1gdi_A* 1gdk_A* 1gdl_A*
1lh1_A* 1lh2_A* 1lh3_A* 1lh5_A* 1lh6_A* 1lh7_A* 2gdm_A*
2lh1_A* 2lh2_A* 2lh3_A* 2lh5_A* 2lh6_A* 2lh7_A*
Length = 153
Score = 26.9 bits (59), Expect = 8.1
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Query: 13 DADECLIDGSCDQTCTNTHLSYTYTDEGFSFQGVKTHLYETIEAFWEECFGPMDIEEWDE 72
+ ++ + + + H+S D F VK + +TI+ + W
Sbjct: 79 EVTGVVVTDATLKNLGSVHVSKGVADA--HFPVVKEAILKTIKEVVGAKWSEELNSAWTI 136
Query: 73 GLSFLT 78
L
Sbjct: 137 AYDELA 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 27.8 bits (62), Expect = 8.4
Identities = 24/176 (13%), Positives = 49/176 (27%), Gaps = 37/176 (21%)
Query: 105 PRGIALDPTSGYMFFTKWG--------ATRPMLERSLLDGTERFPMVTHKIVYPEAIY-F 155
G+ALD ++ T A +L R L + + + F
Sbjct: 187 STGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF 246
Query: 156 CTHYMEHCMIAIDLN---------LSKPRGIALDPTSGYMFFTKWGATRPMLERSLLDGT 206
T ++ +D + + +P + T A + S++D
Sbjct: 247 ITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGK----VSVIDAK 302
Query: 207 ERFPMVTHKIV-------YPYGVTVDFPTKHVYWVDTYLDFIDRINYDGTDRKTIR 255
++K+V +P + + K +Y + IR
Sbjct: 303 ------SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQE--ATQPDDVIR 350
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.441
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,267,721
Number of extensions: 457024
Number of successful extensions: 1601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1347
Number of HSP's successfully gapped: 160
Length of query: 440
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 344
Effective length of database: 4,021,377
Effective search space: 1383353688
Effective search space used: 1383353688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.7 bits)